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Gene: Atg4b (autophagy related 4B, cysteine peptidase) Rattus norvegicus
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Symbol: Atg4b
Name: autophagy related 4B, cysteine peptidase
Description: Predicted to have cysteine-type peptidase activity and endopeptidase activity. Involved in positive regulation of protein catabolic process. Predicted to localize to cytoplasm. Orthologous to human ATG4B (autophagy related 4B cysteine peptidase); PARTICIPATES IN autophagy pathway; INTERACTS WITH 2,4-dinitrotoluene; cocaine; oxaliplatin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: APG4 (ATG4) autophagy-related homolog B; APG4 (ATG4) autophagy-related homolog B (S. cerevisiae); Apg4b; ATG4 autophagy related 4 homolog B; ATG4 autophagy related 4 homolog B (S. cerevisiae); autophagy related 4 homolog B; autophagy related 4 homolog B (S. cerevisiae); autophagy related 4B; autophagy-related 4B; autophagy-related 4B (yeast); cysteine protease ATG4B; LOC316640; MGC112887
Orthologs:
Homo sapiens (human) : ATG4B (autophagy related 4B cysteine peptidase)  HGNC  Alliance
Mus musculus (house mouse) : Atg4b (autophagy related 4B, cysteine peptidase)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Atg4b (autophagy related 4B cysteine peptidase)
Pan paniscus (bonobo/pygmy chimpanzee) : ATG4B (autophagy related 4B cysteine peptidase)
Canis lupus familiaris (dog) : ATG4B (autophagy related 4B cysteine peptidase)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Atg4b (autophagy related 4B cysteine peptidase)
Sus scrofa (pig) : ATG4B (autophagy related 4B cysteine peptidase)
Chlorocebus sabaeus (African green monkey) : ATG4B (autophagy related 4B cysteine peptidase)
Heterocephalus glaber (naked mole-rat) : Atg4b (autophagy related 4B cysteine peptidase)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.09100,888,457 - 100,920,123 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9100,888,501 - 100,918,637 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09100,541,628 - 100,573,277 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4993,054,736 - 93,063,888 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1993,259,504 - 93,268,657 (+)NCBI
Celera991,839,255 - 91,848,407 (+)NCBICelera
Cytogenetic Map9q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Atg4b
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1309664
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.