Tecpr1 (tectonin beta-propeller repeat containing 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Tecpr1 (tectonin beta-propeller repeat containing 1) Rattus norvegicus
Analyze
Symbol: Tecpr1
Name: tectonin beta-propeller repeat containing 1
RGD ID: 1306873
Description: Predicted to enable phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in autophagosome maturation and regulation of autophagosome maturation. Predicted to be located in nucleoplasm. Predicted to be active in autophagosome membrane and lysosomal membrane. Orthologous to human TECPR1 (tectonin beta-propeller repeat containing 1); INTERACTS WITH 1-benzylpiperazine; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC304285; MGC124730; RGD1306873; similar to RIKEN cDNA 2210010N04 gene; tectonin beta-propeller repeat-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,504,456 - 15,534,541 (+)NCBIGRCr8
mRatBN7.21210,391,587 - 10,420,462 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1210,391,696 - 10,419,611 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,198,869 - 11,226,872 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01211,822,165 - 11,850,168 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,845,551 - 10,873,599 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01212,374,132 - 12,403,382 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1212,374,790 - 12,402,552 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01214,426,445 - 14,454,202 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41210,719,095 - 10,747,027 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11210,736,154 - 10,776,251 (+)NCBI
Celera1212,190,848 - 12,218,752 (+)NCBICelera
Cytogenetic Map12p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:21575909   PMID:22342342  


Genomics

Comparative Map Data
Tecpr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,504,456 - 15,534,541 (+)NCBIGRCr8
mRatBN7.21210,391,587 - 10,420,462 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1210,391,696 - 10,419,611 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,198,869 - 11,226,872 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01211,822,165 - 11,850,168 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,845,551 - 10,873,599 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01212,374,132 - 12,403,382 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1212,374,790 - 12,402,552 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01214,426,445 - 14,454,202 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41210,719,095 - 10,747,027 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11210,736,154 - 10,776,251 (+)NCBI
Celera1212,190,848 - 12,218,752 (+)NCBICelera
Cytogenetic Map12p11NCBI
TECPR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38798,214,624 - 98,252,232 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl798,214,624 - 98,252,232 (-)EnsemblGRCh38hg38GRCh38
GRCh37797,843,936 - 97,881,544 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36797,683,972 - 97,719,404 (-)NCBINCBI36Build 36hg18NCBI36
Celera792,539,935 - 92,575,367 (-)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef792,445,624 - 92,482,323 (-)NCBIHuRef
CHM1_1797,774,799 - 97,811,769 (-)NCBICHM1_1
T2T-CHM13v2.0799,444,762 - 99,482,933 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2797,169,633 - 97,206,440 (-)NCBI
Tecpr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395144,131,260 - 144,160,433 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5144,131,260 - 144,160,433 (-)EnsemblGRCm39 Ensembl
GRCm385144,194,442 - 144,223,615 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5144,194,442 - 144,223,615 (-)EnsemblGRCm38mm10GRCm38
MGSCv375144,956,191 - 144,984,447 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365144,447,967 - 144,477,142 (-)NCBIMGSCv36mm8
Celera5141,179,701 - 141,207,966 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map583.07NCBI
Tecpr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546014,106,711 - 14,138,033 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546014,106,711 - 14,137,983 (-)NCBIChiLan1.0ChiLan1.0
TECPR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26116,061,930 - 116,098,903 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17164,326,564 - 164,363,553 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v076,269,935 - 6,306,941 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17103,680,161 - 103,716,572 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7103,680,156 - 103,716,572 (-)Ensemblpanpan1.1panPan2
TECPR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1611,086,498 - 11,112,236 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl611,086,423 - 11,112,241 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha612,712,441 - 12,738,602 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0611,086,505 - 11,112,680 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl611,086,464 - 11,112,670 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1610,955,215 - 10,981,372 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0610,935,026 - 10,961,189 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0611,169,072 - 11,195,233 (+)NCBIUU_Cfam_GSD_1.0
Tecpr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344139,163,869 - 139,188,658 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936750756,072 - 781,549 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936750756,602 - 781,422 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TECPR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl35,414,074 - 5,442,943 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.135,414,071 - 5,442,953 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.235,473,363 - 5,500,906 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TECPR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12814,912,281 - 14,953,427 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2814,912,529 - 14,956,059 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660701,123,889 - 1,163,984 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tecpr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474031,676,044 - 31,704,820 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474031,676,044 - 31,704,828 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tecpr1
85 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:93
Interacting mature miRNAs:108
Transcripts:ENSRNOT00000001347
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12683319017870186Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12931821612829686Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat

Markers in Region
D12Got13  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21210,395,695 - 10,395,989 (+)MAPPERmRatBN7.2
Rnor_6.01212,378,790 - 12,379,083NCBIRnor6.0
Rnor_5.01214,430,445 - 14,430,738UniSTSRnor5.0
RGSC_v3.41210,723,096 - 10,723,389UniSTSRGSC3.4
Celera1212,194,848 - 12,195,141UniSTS
RH 3.4 Map12121.7RGD
RH 3.4 Map12121.7UniSTS
RH 2.0 Map12102.3RGD
Cytogenetic Map12p11UniSTS
RH138737  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21210,419,216 - 10,419,463 (+)MAPPERmRatBN7.2
Rnor_6.01212,402,137 - 12,402,383NCBIRnor6.0
Rnor_5.01214,453,792 - 14,454,038UniSTSRnor5.0
RGSC_v3.41210,746,617 - 10,746,863UniSTSRGSC3.4
Celera1212,218,343 - 12,218,589UniSTS
Cytogenetic Map12p11UniSTS
AU048696  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21210,392,714 - 10,392,851 (+)MAPPERmRatBN7.2
Rnor_6.01212,375,809 - 12,375,945NCBIRnor6.0
Rnor_5.01214,427,464 - 14,427,600UniSTSRnor5.0
RGSC_v3.41210,720,114 - 10,720,250UniSTSRGSC3.4
Celera1212,191,867 - 12,192,003UniSTS
Cytogenetic Map12p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 34 25 10 15 10 74 30 32 11
Low 9 32 31 4 31 8 11 5 9 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000001347   ⟹   ENSRNOP00000001347
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1210,391,696 - 10,419,611 (+)Ensembl
Rnor_6.0 Ensembl1212,374,790 - 12,402,552 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1212,399,833 - 12,401,480 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1212,398,190 - 12,401,535 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092724
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1212,396,687 - 12,398,551 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1212,394,006 - 12,396,994 (+)Ensembl
RefSeq Acc Id: NM_001037191   ⟹   NP_001032268
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81215,505,354 - 15,533,285 (+)NCBI
mRatBN7.21210,391,696 - 10,419,627 (+)NCBI
Rnor_6.01212,374,790 - 12,402,547 (+)NCBI
Rnor_5.01214,426,445 - 14,454,202 (+)NCBI
RGSC_v3.41210,719,095 - 10,747,027 (+)RGD
Celera1212,190,848 - 12,218,752 (+)RGD
Sequence:
RefSeq Acc Id: XM_017598316   ⟹   XP_017453805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81215,505,295 - 15,534,541 (+)NCBI
mRatBN7.21210,391,633 - 10,420,462 (+)NCBI
Rnor_6.01212,374,132 - 12,403,382 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089350   ⟹   XP_038945278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81215,516,445 - 15,534,541 (+)NCBI
mRatBN7.21210,402,790 - 10,420,462 (+)NCBI
RefSeq Acc Id: XM_039089351   ⟹   XP_038945279
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81215,515,356 - 15,534,541 (+)NCBI
mRatBN7.21210,401,703 - 10,420,462 (+)NCBI
RefSeq Acc Id: XR_005491622
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81215,504,456 - 15,524,901 (+)NCBI
mRatBN7.21210,391,587 - 10,411,243 (+)NCBI
RefSeq Acc Id: NP_001032268   ⟸   NM_001037191
- UniProtKB: Q3ZBA0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017453805   ⟸   XM_017598316
- Peptide Label: isoform X1
- UniProtKB: Q3ZBA0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000001347   ⟸   ENSRNOT00000001347
RefSeq Acc Id: XP_038945279   ⟸   XM_039089351
- Peptide Label: isoform X3
- UniProtKB: A6K1H9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945278   ⟸   XM_039089350
- Peptide Label: isoform X2
- UniProtKB: A6K1H9 (UniProtKB/TrEMBL)
Protein Domains
Peroxin/Ferlin   PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3ZBA0-F1-model_v2 AlphaFold Q3ZBA0 1-1166 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698426
Promoter ID:EPDNEW_R8951
Type:initiation region
Name:Tecpr1_1
Description:tectonin beta-propeller repeat containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01212,374,742 - 12,374,802EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306873 AgrOrtholog
BioCyc Gene G2FUF-20032 BioCyc
Ensembl Genes ENSRNOG00000001010 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055011122 UniProtKB/Swiss-Prot
  ENSRNOG00060024312 UniProtKB/Swiss-Prot
  ENSRNOG00065000104 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000001347 ENTREZGENE
  ENSRNOT00000001347.8 UniProtKB/Swiss-Prot
  ENSRNOT00055018873 UniProtKB/Swiss-Prot
  ENSRNOT00060042095 UniProtKB/Swiss-Prot
  ENSRNOT00065000171 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7937275 IMAGE-MGC_LOAD
InterPro Beta-propeller_rpt_TECPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peroxin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peroxin/Ferlin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:304285 UniProtKB/Swiss-Prot
MGC_CLONE MGC:124730 IMAGE-MGC_LOAD
NCBI Gene 304285 ENTREZGENE
PANTHER DYSFERLIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TECTONIN BETA-PROPELLER REPEAT-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Hyd_WA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pex24p UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tectonin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tecpr1 PhenoGen
RatGTEx ENSRNOG00000001010 RatGTEx
  ENSRNOG00055011122 RatGTEx
  ENSRNOG00060024312 RatGTEx
  ENSRNOG00065000104 RatGTEx
SMART DysFC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DysFN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TECPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6K1H9 ENTREZGENE, UniProtKB/TrEMBL
  Q3ZBA0 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-06-12 Tecpr1  tectonin beta-propeller repeat containing 1  RGD1306873  similar to RIKEN cDNA 2210010N04 gene  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1306873  similar to RIKEN cDNA 2210010N04 gene  RGD1306873_predicted  similar to RIKEN cDNA 2210010N04 gene (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1306873_predicted  similar to RIKEN cDNA 2210010N04 gene (predicted)  LOC304285_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC304285_predicted  similar to RIKEN cDNA 2210010N04 gene (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL