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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Spinocerebellar Ataxias | | ISO | RUBCN (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Spinocerebellar Ataxias | | ISO | RUBCN (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
3. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
5. | Comprehensive gene review and curation | RGD comprehensive gene curation |
6. | Mammalian autophagy: core molecular machinery and signaling regulation. | Yang Z and Klionsky DJ, Curr Opin Cell Biol. 2010 Apr;22(2):124-31. Epub 2009 Dec 23. |
Rubcn (Rattus norvegicus - Norway rat) |
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RUBCN (Homo sapiens - human) |
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Rubcn (Mus musculus - house mouse) |
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Rubcn (Chinchilla lanigera - long-tailed chinchilla) |
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RUBCN (Pan paniscus - bonobo/pygmy chimpanzee) |
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RUBCN (Canis lupus familiaris - dog) |
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Rubcn (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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RUBCN (Sus scrofa - pig) |
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RUBCN (Chlorocebus sabaeus - green monkey) |
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Rubcn (Heterocephalus glaber - naked mole-rat) |
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Variants in Rubcn
131 total Variants ![]() |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
RH127712 |
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RH128519 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 37 | 14 | 4 | 13 | 4 | 1 | 1 | 74 | 35 | 41 | 11 | 1 |
Low | 6 | 43 | 37 | 6 | 37 | 7 | 10 | 7 | |||||
Below cutoff |
RefSeq Transcripts | XM_001065343 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006221165 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006221166 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008776733 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017598222 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039088921 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039088922 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039088923 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039088924 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039088925 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | CH473967 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
JACYVU010000222 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000082435 ⟹ ENSRNOP00000075115 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000082594 ⟹ ENSRNOP00000073717 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000107263 ⟹ ENSRNOP00000097960 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000109522 ⟹ ENSRNOP00000080345 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000112016 ⟹ ENSRNOP00000088608 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039088921 ⟹ XP_038944849 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039088922 ⟹ XP_038944850 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039088923 ⟹ XP_038944851 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039088924 ⟹ XP_038944852 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039088925 ⟹ XP_038944853 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | XP_038944849 | (Get FASTA) | NCBI Sequence Viewer |
XP_038944850 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038944851 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038944852 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038944853 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDM11390 | (Get FASTA) | NCBI Sequence Viewer |
EDM11391 | (Get FASTA) | NCBI Sequence Viewer | |
EDM11392 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000073717 | ||
ENSRNOP00000073717.2 | |||
ENSRNOP00000075115.2 | |||
ENSRNOP00000080345 | |||
ENSRNOP00000080345.1 | |||
ENSRNOP00000088608.1 | |||
ENSRNOP00000097960 | |||
ENSRNOP00000097960.1 |
RefSeq Acc Id: | ENSRNOP00000075115 ⟸ ENSRNOT00000082435 |
RefSeq Acc Id: | ENSRNOP00000073717 ⟸ ENSRNOT00000082594 |
RefSeq Acc Id: | XP_038944851 ⟸ XM_039088923 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A0A8I5ZQF9 (UniProtKB/TrEMBL), A0A0G2K9T0 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038944853 ⟸ XM_039088925 |
- Peptide Label: | isoform X5 |
- UniProtKB: | A0A8I6GMR7 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038944849 ⟸ XM_039088921 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A0G2K687 (UniProtKB/TrEMBL), A6IRN7 (UniProtKB/TrEMBL), A0A8I6GMR7 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038944850 ⟸ XM_039088922 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A8I6GMR7 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038944852 ⟸ XM_039088924 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | ENSRNOP00000097960 ⟸ ENSRNOT00000107263 |
RefSeq Acc Id: | ENSRNOP00000080345 ⟸ ENSRNOT00000109522 |
RefSeq Acc Id: | ENSRNOP00000088608 ⟸ ENSRNOT00000112016 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-A0A0G2K687-F1-model_v2 | AlphaFold | A0A0G2K687 | 1-962 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1305422 | AgrOrtholog |
BioCyc Gene | G2FUF-21117 | BioCyc |
Ensembl Genes | ENSRNOG00000059880 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000082435.2 | UniProtKB/TrEMBL |
ENSRNOT00000082594 | ENTREZGENE | |
ENSRNOT00000082594.2 | UniProtKB/TrEMBL | |
ENSRNOT00000107263 | ENTREZGENE | |
ENSRNOT00000107263.1 | UniProtKB/TrEMBL | |
ENSRNOT00000109522 | ENTREZGENE | |
ENSRNOT00000109522.1 | UniProtKB/TrEMBL | |
ENSRNOT00000112016.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.20.58.900 | UniProtKB/TrEMBL |
InterPro | Run_dom | UniProtKB/TrEMBL |
Run_dom_sf | UniProtKB/TrEMBL | |
Zf-RING_9 | UniProtKB/TrEMBL | |
NCBI Gene | 303885 | ENTREZGENE |
PANTHER | PHOX (PX) DOMAIN-CONTAINING PROTEIN | UniProtKB/TrEMBL |
RUN DOMAIN BECLIN-1-INTERACTING AND CYSTEINE-RICH DOMAIN-CONTAINING PROTEIN | UniProtKB/TrEMBL | |
Pfam | RUN | UniProtKB/TrEMBL |
zf-RING_9 | UniProtKB/TrEMBL | |
PhenoGen | Rubcn | PhenoGen |
PROSITE | RUN | UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000059880 | RatGTEx |
SMART | DUF4206 | UniProtKB/TrEMBL |
RUN | UniProtKB/TrEMBL | |
Superfamily-SCOP | SSF140741 | UniProtKB/TrEMBL |
UniProt | A0A0G2K687 | ENTREZGENE, UniProtKB/TrEMBL |
A0A0G2K9T0 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I5ZQF9 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I6AJ73_RAT | UniProtKB/TrEMBL | |
A0A8I6GMR7 | ENTREZGENE, UniProtKB/TrEMBL | |
A6IRN7 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2018-12-10 | Rubcn | rubicon autophagy regulator | Rubcn | RUN and cysteine rich domain containing beclin 1 interacting protein | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2016-02-03 | Rubcn | RUN and cysteine rich domain containing beclin 1 interacting protein | Rubcn | RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2015-10-26 | Rubcn | RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein | RGD1305422 | similar to mKIAA0226 protein | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-04-30 | RGD1305422 | similar to mKIAA0226 protein | RGD1305422_predicted | similar to mKIAA0226 protein (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-20 | RGD1305422_predicted | similar to mKIAA0226 protein (predicted) | LOC303885_predicted | Symbol and Name status set to approved | 1331353 | APPROVED | |
2005-01-12 | LOC303885_predicted | similar to mKIAA0226 protein (predicted) | Symbol and Name status set to provisional | 70820 | PROVISIONAL |