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Gene: Zfyve1 (zinc finger FYVE-type containing 1) Rattus norvegicus

Analyze

Symbol:

Zfyve1

Name:

zinc finger FYVE-type containing 1

RGD ID:

1307795

Description:

Predicted to enable phosphatidylinositol binding activity and phosphatidylinositol-3,4-bisphosphate binding activity. Predicted to be involved in several processes, including cellular response to starvation; lipid droplet formation; and positive regulation by host of viral genome replication. Predicted to be located in several cellular components, including autophagosome; mitochondria-associated endoplasmic reticulum membrane contact site; and omegasome. Predicted to be extrinsic component of omegasome membrane. Predicted to be active in lipid droplet. Orthologous to human ZFYVE1 (zinc finger FYVE-type containing 1); INTERACTS WITH 3-chloropropane-1,2-diol; all-trans-retinoic acid; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC299188; zinc finger FYVE domain-containing protein 1; zinc finger, FYVE domain containing 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	108,916,062 - 108,965,231 (-)	NCBI		GRCr8
mRatBN7.2	6	103,184,938 - 103,234,111 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	103,184,938 - 103,234,039 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	103,346,651 - 103,395,756 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	103,645,865 - 103,694,962 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	103,015,337 - 103,064,435 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	107,031,411 - 107,080,590 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	107,031,412 - 107,080,524 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	118,460,937 - 118,509,830 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	107,498,866 - 107,548,204 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	107,503,540 - 107,551,702 (-)	NCBI
Celera	6	101,015,641 - 101,064,748 (-)	NCBI		Celera
Cytogenetic Map	6	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

actinomycin D (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP,ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Brodifacoum (EXP)

cadmium dichloride (EXP)

camptothecin (ISO)

cisplatin (ISO)

cobalt dichloride (EXP,ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

DDE (ISO)

dexamethasone (ISO)

diuron (EXP)

doxorubicin (ISO)

Enterolactone (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

methapyrilene (ISO)

methyl methanesulfonate (ISO)

Nutlin-3 (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

quercetin (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

thiram (ISO)

titanium dioxide (ISO)

toxaphene (EXP)

trichostatin A (ISO)

triphenyl phosphate (EXP,ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to starvation (ISO)

lipid droplet formation (IBA,ISO)

macroautophagy (ISO)

positive regulation by host of viral genome replication (ISO)

Cellular Component

autophagosome (ISO)

endoplasmic reticulum (ISO)

endoplasmic reticulum membrane (ISO)

extrinsic component of omegasome membrane (ISO)

Golgi apparatus (ISO)

Golgi stack (ISO)

lipid droplet (IBA,ISO)

membrane (ISO)

mitochondria-associated endoplasmic reticulum membrane contact site (ISO)

mitochondrion (ISO)

omegasome (ISO)

perinuclear region of cytoplasm (ISO)

phagophore assembly site (ISO)

Molecular Function

1-phosphatidylinositol binding (IBA,ISO)

metal ion binding (IEA)

phosphatidylinositol-3,4,5-trisphosphate binding (IBA,ISO)

phosphatidylinositol-3,4-bisphosphate binding (IBA,ISO)

phosphatidylinositol-3-phosphate binding (IBA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11256955	PMID:11739631	PMID:11804589	PMID:19389623	PMID:19898463	PMID:22456507	PMID:23455425	PMID:24954904	PMID:25578879	PMID:25876663	PMID:30970241	PMID:31293035

Genomics

Comparative Map Data

Zfyve1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	108,916,062 - 108,965,231 (-)	NCBI		GRCr8
mRatBN7.2	6	103,184,938 - 103,234,111 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	103,184,938 - 103,234,039 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	103,346,651 - 103,395,756 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	103,645,865 - 103,694,962 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	103,015,337 - 103,064,435 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	107,031,411 - 107,080,590 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	107,031,412 - 107,080,524 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	118,460,937 - 118,509,830 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	107,498,866 - 107,548,204 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	107,503,540 - 107,551,702 (-)	NCBI
Celera	6	101,015,641 - 101,064,748 (-)	NCBI		Celera
Cytogenetic Map	6	q31	NCBI

ZFYVE1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	72,969,445 - 73,027,106 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	72,969,451 - 73,027,131 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	73,436,153 - 73,493,814 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	72,505,912 - 72,563,592 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	72,505,911 - 72,523,417	NCBI
Celera	14	53,499,299 - 53,557,223 (-)	NCBI		Celera
Cytogenetic Map	14	q24.2	NCBI
HuRef	14	53,602,230 - 53,659,971 (-)	NCBI		HuRef
CHM1_1	14	73,374,318 - 73,431,997 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	67,175,059 - 67,232,660 (-)	NCBI		T2T-CHM13v2.0

Zfyve1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	83,593,330 - 83,679,289 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	83,593,332 - 83,643,996 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	83,546,556 - 83,597,245 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	83,546,558 - 83,597,222 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	84,887,891 - 84,938,097 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	84,436,673 - 84,484,642 (-)	NCBI		MGSCv36	mm8
Celera	12	84,993,303 - 85,043,636 (-)	NCBI		Celera
Cytogenetic Map	12	D1	NCBI
cM Map	12	38.76	NCBI

Zfyve1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955523	2,334,175 - 2,388,612 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955523	2,334,175 - 2,388,612 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZFYVE1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	74,081,251 - 74,138,942 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	73,297,764 - 73,355,455 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	53,550,688 - 53,608,297 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	72,414,810 - 72,471,578 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	72,414,810 - 72,471,578 (-)	Ensembl	panpan1.1		panPan2

ZFYVE1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	46,353,489 - 46,407,912 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	46,353,761 - 46,406,038 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	46,033,682 - 46,088,098 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	46,575,384 - 46,629,813 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	46,575,394 - 46,629,785 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	46,243,456 - 46,297,884 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	46,259,416 - 46,313,970 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	46,650,744 - 46,705,414 (-)	NCBI		UU_Cfam_GSD_1.0

Zfyve1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	29,704,511 - 29,764,447 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	2,304,438 - 2,364,709 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	2,304,521 - 2,364,472 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZFYVE1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	96,323,262 - 96,380,284 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	96,323,256 - 96,380,286 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	102,110,548 - 102,167,573 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZFYVE1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	50,219,429 - 50,276,783 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	50,220,867 - 50,273,900 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	38,397,013 - 38,456,640 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zfyve1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	28,384,122 - 28,442,211 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	28,384,199 - 28,442,211 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	191
Count of miRNA genes:	118
Interacting mature miRNAs:	142
Transcripts:	ENSRNOT00000011662
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	68767270	135411972	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	88019181	136741135	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	106095977	147156653	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	84490437	129490437	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	101593607	138161926	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	86494122	112380234	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	99437079	125323237	Rat
1331722	Thshl1	Thyroid stimulating hormone level QTL 1	11.7	0.0001	blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	6	99708426	112483760	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	71278722	116278722	Rat
70176	Mcsm1	Mammary carcinoma susceptibility modifier QTL 1			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	64367996	109367996	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	90871046	135871046	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	93560258	136550638	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	98944780	143944780	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	100704576	136029228	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	46050607	116278722	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	20859430	113082285	Rat
2293837	Kiddil1	Kidney dilation QTL 1	3.7		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
2293842	Kiddil3	Kidney dilation QTL 3	4.3		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	90871046	135871046	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	93560258	136550638	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	78204640	123204640	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	93560258	136550638	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	76937178	121937178	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	101593607	146593607	Rat

Markers in Region

D6Got139

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	103,210,322 - 103,210,596 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	107,056,796 - 107,057,069	NCBI	Rnor6.0
Rnor_5.0	6	118,484,173 - 118,484,446	UniSTS	Rnor5.0
RGSC_v3.4	6	107,524,113 - 107,524,387	RGD	RGSC3.4
RGSC_v3.4	6	107,524,114 - 107,524,387	UniSTS	RGSC3.4
RGSC_v3.1	6	107,527,569 - 107,527,843	RGD
Celera	6	101,041,022 - 101,041,295	UniSTS
RH 3.4 Map	6	735.8	UniSTS
RH 3.4 Map	6	735.8	RGD
RH 2.0 Map	6	985.0	RGD
Cytogenetic Map	6	q24	UniSTS

RH143685

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	103,187,923 - 103,188,095 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	107,034,398 - 107,034,569	NCBI	Rnor6.0
Rnor_5.0	6	118,506,673 - 118,506,844	UniSTS	Rnor5.0
RGSC_v3.4	6	107,501,852 - 107,502,023	UniSTS	RGSC3.4
Celera	6	101,018,627 - 101,018,798	UniSTS
RH 3.4 Map	6	736.7	UniSTS
Cytogenetic Map	6	q24	UniSTS

BF398857

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	103,185,352 - 103,185,561 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	107,031,827 - 107,032,035	NCBI	Rnor6.0
Rnor_5.0	6	118,509,207 - 118,509,415	UniSTS	Rnor5.0
RGSC_v3.4	6	107,499,281 - 107,499,489	UniSTS	RGSC3.4
Celera	6	101,016,056 - 101,016,264	UniSTS
RH 3.4 Map	6	738.2	UniSTS
Cytogenetic Map	6	q24	UniSTS

AU049980

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	103,210,329 - 103,210,555 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	107,056,803 - 107,057,028	NCBI	Rnor6.0
Rnor_5.0	6	118,484,214 - 118,484,439	UniSTS	Rnor5.0
RGSC_v3.4	6	107,524,121 - 107,524,346	UniSTS	RGSC3.4
Celera	6	101,041,029 - 101,041,254	UniSTS
Cytogenetic Map	6	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000011662 ⟹ ENSRNOP00000011662

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	103,184,938 - 103,234,039 (-)	Ensembl
Rnor_6.0 Ensembl	6	107,031,412 - 107,080,524 (-)	Ensembl

RefSeq Acc Id:

NM_001106743 ⟹ NP_001100213

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	108,916,062 - 108,965,160 (-)	NCBI
mRatBN7.2	6	103,184,938 - 103,234,039 (-)	NCBI
Rnor_6.0	6	107,031,412 - 107,080,524 (-)	NCBI
Rnor_5.0	6	118,460,937 - 118,509,830 (+)	NCBI
RGSC_v3.4	6	107,498,866 - 107,548,204 (-)	RGD
Celera	6	101,015,641 - 101,064,748 (-)	RGD

Sequence:

show sequence

GCTGATTCCAACTGACAACAAGAGAGGAGGAAGCCTGGGAGGCAGCAGAGGAGGAGGGGGCGGA
GATGGAACTGAGGATGGATCCACCGGGGCCCTAGAGCAGCCCAGGTCCCGTCGCCAATCCGCGT
CCCCCCACACACCGCCTTGCCTTGGCCGAGCTGCTCCGGAGAGTCTCAGTTATGAGTGCCCAGA
CTTCCTTAGCAGAGAAGGGCCTAAATCCGGGGCTCATGTGCCAGGAGAGTTATGCTTGCAGCGG
GACTGATGAAGCTGTCTTCGAATGCGATGAGTGTTGTAGTTTGCAGTGTCTCCGCTGTGAGGAA
GAACTCCACCGGCAGGAGCGCCTTCGAAACCATGAGCGGATAAGACTCAAAGCTGGTCATGTCC
CTTACTGTGACCCCTGCAAGGGCCCCAACGGGCATTCACCAGGCGTCAGGCAGAGGGCAGCCGT
GAGGTGCCAGACCTGCAAGATCAACCTGTGTCTGGAGTGCCAGAAGAGGACTCATTCAGGGGGT
AACAAGAGAAGACACCCCGTTACTGTGTACCATGTCAGTAAGGTCCAGGAGTCTCTGGAGGGTG
AAGAGATGGATGAGGAGACCAAGAGGAGGAAGATGACAGAGAGGGTTGTGAGCTTCCTCCTGGT
AGATGAAAACGAAGAGATCCAGGTAACAAATGAAGAGGACTTTATTAGGAAATTGGACTGTAAG
CCTGACCAGCATCTCAAGGTGGTTTCCATTTTTGGAAATACTGGTGATGGAAAGTCCCATACCC
TCAACCACACTTTCTTCCATGGCCGAGAAGTCTTCAAAACGTCCCCTGCTCAGGAGTCCTGCAC
TGTGGGAGTGTGGGCAGCCCATGACCCAGTCCATAAGGTAGCAGTGATAGACACAGAAGGGCTC
TTGGGGGCCACCGTGAATCTGAGCCAGAGGACACGGCTGCTGCTAAAGGTCCTGGCCATCTCAG
ACTTGGTCATCTATCGAACTCATGCAGACCGGCTGCACAATGACCTCTTCAAATTCCTTGGGGA
TGCCTCGGAAGCTTACCTGAAGCACTTTACCAAGGAACTCAAGGCTACCACTGCACGCTGTGGC
CTGGATGTCCCCTTATCCACTCTGGGCCCTGCAGTCATTATTTTCCACGAGACTGTGCACACTC
AGCTTCTGGGTTCTGATCACCCCTCAGAGGCTCCTGAGAAGCTCATCCAGGACCGGTTCAGGAA
GCTGGGCCGCTTCCCTGAAGCCTTTAGCTCCATTCATTACAAGGGAACGAGGACATACAATCCC
CCCACAGACTTCTCTGGGCTTCGGCGTGCCCTGGAACAGCTGCTAGAGAACAACACTACGAGGT
CTCCTCGGCACCCAGGGGTCATCTTCAAAGCCCTGAAGGCACTAAGTGACCGCTTCAGCGGTGA
GATCCCTGATGACCAGATGGCGCACAGTTCATTTTTTCCAGATGAGTACTTCACCTGCTCCTCA
CTCTGCCTCAGCTGTGGGGCGGGATGTAAGAACAGCATGAACCACGGCAAGGAAGGGGTGCCTC
ATGAAGCCAAGAGCCGTTGTCGGTACTCACACCAGTATGACAACCGAGTTTATACCTGCAAGGC
CTGCTATGAGAGAGGCAAGGAAGTCAGCGTGGTGCCCAAAACATCCGCCTCCACCGACTCTCCC
TGGATGGGTCTGGCGAAGTATGCCTGGTCCGGGTATGTGATCGAATGTCCTAACTGCGGTGTGG
TCTATCGGAGCCGCCAGTACTGGTTTGGGAACCAAGATCCTGTGGATACAGTAGTTCGGACAGA
GATTGTACATGTGTGGCCTGGAACGGATGCATTTCTGAAGGATAACAACAATGCTGCCCAGCGT
CTGTTGGATGGGATGAACTTTATGGCCCAGTCAGTGTCTGAGCTTAGTCTTGGACCCACTAAGG
CTGTGACTTCTTGGCTAACGGACCAGATCGCTCCTGCCTACTGGAGGCCCAACTCCCAGATCCT
GAGCTGCAACCAGTGTGCGACATCCTTCAAGGACAACGACACCAAGCATCACTGCCGGGCCTGT
GGTGAGGGCTTCTGTGACAGCTGTTCATCCAAGACCCGGCCAGTGCCCGAGAGGGGCTGGGGAC
CTGCGCCTGTCCGTGTGTGTGACAACTGCTACGACGCCAGGAATGTCCAGTTAGATGTGGCTGA
GGCGCAGGCAGATGATGAAGGCGGAACGCTGATCGCCAGGAAGGTGGGCGAGGCCGTGCAGAAC
ACCTTGGGAGCCGTGGTGACAGCTATTGACATACCACTAGGCCTGGTGAAAGATGCTGCCAGGC
CGGCCTACTGGGTGCCCGACCACGAGATCCTGCACTGCCACAACTGCCGCAAGGAGTTCAGTGT
CAAGCTCTCCAAGCACCACTGCCGAGCCTGCGGACAGGGCTTCTGCGACGAGTGCTCCCATGGC
CGCAGGGCTGTGCCCTCTCGAGGCTGGGACCATCCAGTCCGAGTCTGCTTCAACTGCAATAAAA
AGCCTGGTGACCTTTAACCCCAGTTCCCTCTCCACTCCTTCACAGTTCCTTAGGTTCTCAGGGT
TAGAAACAAGTCTCACTGAGGTAGGCCCTCCTCCTGGTCACCTGGTGTGGTGTGGTGTGGTGTG
TGTGCCCCCTCACATCCCTGGGCTATTTTCCTCAGTGGAGGTGAGCCTGGCGGTAGATCCGAAG
GCATGAAAATCCGAAGGCATGAACCACCTCAGGGCAGGGGACGGAGGGAACAGCTCTCAGTAAA
GCAGATTGGACAAGAGTCCATTGCATTTATTTCAGCTAAAATAATAAATCCCTCTCTCCATTCA
TCCACGTAGAGTGGATTTGGAGTGCTCAAGACTGTTCTGCTTTGAAGACTTACCCTGGCCTGGC
CCACACAGGGACAGAGTGGCACTGGGAGTCAGTCTTTCTCCTGAAGCAAGCCAGGCTTAGAGTC
ACCTTTTGCTGCTTCTCCCAGAGCTTGGCAGAGTCCTTTTCTGCCCCTTCTCCCTCCTGCTCCC
CAGCTGCCTGATTGGCCGGCCGCCTGGGTCTGAACCTGCTGCTTGAAGCAGTGTTGGTTCTGGC
TTGTTCTGGGCAGAGGTCCGGCTCGGTTGGTGTGTAAGCTGCTGGTATGTGTAAGGGGCAGAGG
GCAGGCAGGCAGGCAGGGTCTTGAGACATAGAAGTGAAAACGCAGGTCCTGGCAGGATATCTGC
TCCTGGATGCTTCTGTCTCCATTAGGTTTTCTTAGAAGGCCATACCCTGCCCCTTAGTCAGAGC
TCAGCTCCTCACCTCTGCTCCTCTGAGGATTTTTATTACTCAGTGTCTTACTCTCTGTTCCCAT
ACATAAAACCCCTCTGTCTGTTATGGGGGGAGGGGTGACCACGAGAAACCTTCCAGGGAAACAG
CACAGAATGGACTGTTAGTTGTGTTTTTTAAAAATATATATAAATATATAAATAAATATTTCAA
CAGATCATAAGGAAAAAACTTCTCTTTGGTTCTTACAAGAGAAATGAAGTGAACAAATGTTTCT
CAAAAAGAGCTTGGACATCCTATCGATCATGACTGGAAGACTGTTGTGCTGAACTCCTGTGGGG
TGGAGTTCATCTTCAATGGCCAAAAAAAGAAGAATTACAGCAGCGTTGTTATTGATTGAACTGA
TGGGTGGGTGGAGCCTCGGGAAGTGTGTGGGTGGGCAGTCGTCCCTGGGGTGTGTATCCAGCGG
TTAGCCTTGGAATGGATCGGTCCTTCTCAGATCTGTCCTTTCTGCTTCCCGAGGCCCTGCTCTA
GAACTGTGTCATCACTCACCACTATAAAGGACTCTTCTGCTGAGC

hide sequence

RefSeq Acc Id:

XM_006240323 ⟹ XP_006240385

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	108,916,064 - 108,965,227 (-)	NCBI
mRatBN7.2	6	103,184,939 - 103,234,109 (-)	NCBI
Rnor_6.0	6	107,031,411 - 107,080,590 (-)	NCBI
Rnor_5.0	6	118,460,937 - 118,509,830 (+)	NCBI

Sequence:

show sequence

CCCTCTCTGGGTTGCGCTGTTCATGCCTTCCTGTTGGTCCGAGCTGGGAGAAGTTCACTCTGAT
CAGCTGATTCCAACTGACAACAAGAGAGGAGGAAGCCTGGGAGGCAGCAGAGGAGGAGGGGGCG
GAGATGGAACTGAGGATGGATCCACCGGGGCCCTAGAGCAGCCCAGGTCCCGTCGCCAATCCGC
GTCCCCCCACACACCGCCTTGCCTTGGCCGAGCTGCTCCGGGTAGCCCTTGAAACACTGGCCCG
AGGTCCAAGTAGATCGAACAGCTCCTCACCGCCTTCTTCCATCACTATGACTTGTAGCTGAGGC
CCAAACCAATGAGCCGACCTTTGTGAACCCAGCAGACCGCTCAGCGTGCACGTGCCGCAGAGGC
TCTGTCACTTCCACCACATCTTTCTTTGCACTTTGCAGAGGATGAGACCATCATCAAACTCAGT
CGACGCTGCTGCTGGTACAAGAGACTTGGAGGCAGACAATTAAAAACTTGAACATTTGTGAGTG
TGTAAAAATCCTAAGCCAGACAGGTTTTCAGAACCCTGTGGAAGCGCTAGCCGCCTTCAGACTC
AAAGCATTTGTCTTCCTTCATTCCTGGAAAAGTACAGTAGTGACTGTTGCAGGGTGGGTGGTTT
CCAGAGAGTCTCAGTTATGAGTGCCCAGACTTCCTTAGCAGAGAAGGGCCTAAATCCGGGGCTC
ATGTGCCAGGAGAGTTATGCTTGCAGCGGGACTGATGAAGCTGTCTTCGAATGCGATGAGTGTT
GTAGTTTGCAGTGTCTCCGCTGTGAGGAAGAACTCCACCGGCAGGAGCGCCTTCGAAACCATGA
GCGGATAAGACTCAAAGCTGGTCATGTCCCTTACTGTGACCCCTGCAAGGGCCCCAACGGGCAT
TCACCAGGCGTCAGGCAGAGGGCAGCCGTGAGGTGCCAGACCTGCAAGATCAACCTGTGTCTGG
AGTGCCAGAAGAGGACTCATTCAGGGGGTAACAAGAGAAGACACCCCGTTACTGTGTACCATGT
CAGTAAGGTCCAGGAGTCTCTGGAGGGTGAAGAGATGGATGAGGAGACCAAGAGGAGGAAGATG
ACAGAGAGGGTTGTGAGCTTCCTCCTGGTAGATGAAAACGAAGAGATCCAGGTAACAAATGAAG
AGGACTTTATTAGGAAATTGGACTGTAAGCCTGACCAGCATCTCAAGGTGGTTTCCATTTTTGG
AAATACTGGTGATGGAAAGTCCCATACCCTCAACCACACTTTCTTCCATGGCCGAGAAGTCTTC
AAAACGTCCCCTGCTCAGGAGTCCTGCACTGTGGGAGTGTGGGCAGCCCATGACCCAGTCCATA
AGGTAGCAGTGATAGACACAGAAGGGCTCTTGGGGGCCACCGTGAATCTGAGCCAGAGGACACG
GCTGCTGCTAAAGGTCCTGGCCATCTCAGACTTGGTCATCTATCGAACTCATGCAGACCGGCTG
CACAATGACCTCTTCAAATTCCTTGGGGATGCCTCGGAAGCTTACCTGAAGCACTTTACCAAGG
AACTCAAGGCTACCACTGCACGCTGTGGCCTGGATGTCCCCTTATCCACTCTGGGCCCTGCAGT
CATTATTTTCCACGAGACTGTGCACACTCAGCTTCTGGGTTCTGATCACCCCTCAGAGGCTCCT
GAGAAGCTCATCCAGGACCGGTTCAGGAAGCTGGGCCGCTTCCCTGAAGCCTTTAGCTCCATTC
ATTACAAGGGAACGAGGACATACAATCCCCCCACAGACTTCTCTGGGCTTCGGCGTGCCCTGGA
ACAGCTGCTAGAGAACAACACTACGAGGTCTCCTCGGCACCCAGGGGTCATCTTCAAAGCCCTG
AAGGCACTAAGTGACCGCTTCAGCGGTGAGATCCCTGATGACCAGATGGCGCACAGTTCATTTT
TTCCAGATGAGTACTTCACCTGCTCCTCACTCTGCCTCAGCTGTGGGGCGGGATGTAAGAACAG
CATGAACCACGGCAAGGAAGGGGTGCCTCATGAAGCCAAGAGCCGTTGTCGGTACTCACACCAG
TATGACAACCGAGTTTATACCTGCAAGGCCTGCTATGAGAGAGGCAAGGAAGTCAGCGTGGTGC
CCAAAACATCCGCCTCCACCGACTCTCCCTGGATGGGTCTGGCGAAGTATGCCTGGTCCGGGTA
TGTGATCGAATGTCCTAACTGCGGTGTGGTCTATCGGAGCCGCCAGTACTGGTTTGGGAACCAA
GATCCTGTGGATACAGTAGTTCGGACAGAGATTGTACATGTGTGGCCTGGAACGGATGCATTTC
TGAAGGATAACAACAATGCTGCCCAGCGTCTGTTGGATGGGATGAACTTTATGGCCCAGTCAGT
GTCTGAGCTTAGTCTTGGACCCACTAAGGCTGTGACTTCTTGGCTAACGGACCAGATCGCTCCT
GCCTACTGGAGGCCCAACTCCCAGATCCTGAGCTGCAACCAGTGTGCGACATCCTTCAAGGACA
ACGACACCAAGCATCACTGCCGGGCCTGTGGTGAGGGCTTCTGTGACAGCTGTTCATCCAAGAC
CCGGCCAGTGCCCGAGAGGGGCTGGGGACCTGCGCCTGTCCGTGTGTGTGACAACTGCTACGAC
GCCAGGAATGTCCAGTTAGATGTGGCTGAGGCGCAGGCAGATGATGAAGGCGGAACGCTGATCG
CCAGGAAGGTGGGCGAGGCCGTGCAGAACACCTTGGGAGCCGTGGTGACAGCTATTGACATACC
ACTAGGCCTGGTGAAAGATGCTGCCAGGCCGGCCTACTGGGTGCCCGACCACGAGATCCTGCAC
TGCCACAACTGCCGCAAGGAGTTCAGTGTCAAGCTCTCCAAGCACCACTGCCGAGCCTGCGGAC
AGGGCTTCTGCGACGAGTGCTCCCATGGCCGCAGGGCTGTGCCCTCTCGAGGCTGGGACCATCC
AGTCCGAGTCTGCTTCAACTGCAATAAAAAGCCTGGTGACCTTTAACCCCAGTTCCCTCTCCAC
TCCTTCACAGTTCCTTAGGTTCTCAGGGTTAGAAACAAGTCTCACTGAGGTAGGCCCTCCTCCT
GGTCACCTGGTGTGGTGTGGTGTGGTGTGTGTGCCCCCTCACATCCCTGGGCTATTTTCCTCAG
TGGAGGTGAGCCTGGCGGTAGATCCGAAGGCATGAAAATCCGAAGGCATGAACCACCTCAGGGC
AGGGGACGGAGGGAACAGCTCTCAGTAAAGCAGATTGGACAAGAGTCCATTGCATTTATTTCAG
CTAAAATAATAAATCCCTCTCTCCATTCATCCACGTAGAGTGGATTTGGAGTGCTCAAGACTGT
TCTGCTTTGAAGACTTACCCTGGCCTGGCCCACACAGGGACAGAGTGGCACTGGGAGTCAGTCT
TTCTCCTGAAGCAAGCCAGGCTTAGAGTCACCTTTTGCTGCTTCTCCCAGAGCTTGGCAGAGTC
CTTTTCTGCCCCTTCTCCCTCCTGCTCCCCAGCTGCCTGATTGGCCGGCCGCCTGGGTCTGAAC
CTGCTGCTTGAAGCAGTGTTGGTTCTGGCTTGTTCTGGGCAGAGGTCCGGCTCGGTTGGTGTGT
AAGCTGCTGGTATGTGTAAGGGGCAGAGGGCAGGCAGGCAGGCAGGGTCTTGAGACATAGAAGT
GAAAACGCAGGTCCTGGCAGGATATCTGCTCCTGGATGCTTCTGTCTCCATTAGGTTTTCTTAG
AAGGCCATACCCTGCCCCTTAGTCAGAGCTCAGCTCCTCACCTCTGCTCCTCTGAGGATTTTTA
TTACTCAGTGTCTTACTCTCTGTTCCCATACATAAAACCCCTCTGTCTGTTATGGGGGGAGGGG
TGACCACGAGAAACCTTCCAGGGAAACAGCACAGAATGGACTGTTAGTTGTGTTTTTTAAAAAT
ATATATAAATATATAAATAAATATTTCAACAGATCATAAGGAAAAAACTTCTCTTTGGTTCTTA
CAAGAGAAATGAAGTGAACAAATGTTTCTCAAAAAGAGCTTGGACATCCTATCGATCATGACTG
GAAGACTGTTGTGCTGAACTCCTGTGGGGTGGAGTTCATCTTCAATGGCCAAAAAAAGAAGAAT
TACAGCAGCGTTGTTATTGATTGAACTGATGGGTGGGTGGAGCCTCGGGAAGTGTGTGGGTGGG
CAGTCGTCCCTGGGGTGTGTATCCAGCGGTTAGCCTTGGAATGGATCGGTCCTTCTCAGATCTG
TCCTTTCTGCTTCCCGAGGCCCTGCTCTAGAACTGTGTCATCACTCACCACTATAAAGGACTCT
TCTGCTGAGCA

hide sequence

RefSeq Acc Id:

XM_039112023 ⟹ XP_038967951

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	108,916,064 - 108,965,223 (-)	NCBI
mRatBN7.2	6	103,184,939 - 103,234,111 (-)	NCBI

RefSeq Acc Id:

XM_039112024 ⟹ XP_038967952

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	108,916,064 - 108,965,227 (-)	NCBI
mRatBN7.2	6	103,184,939 - 103,234,111 (-)	NCBI

RefSeq Acc Id:

XM_039112025 ⟹ XP_038967953

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	108,916,064 - 108,965,218 (-)	NCBI
mRatBN7.2	6	103,184,939 - 103,234,111 (-)	NCBI

RefSeq Acc Id:

XM_063261729 ⟹ XP_063117799

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	108,916,064 - 108,965,231 (-)	NCBI

RefSeq Acc Id:

XM_063261730 ⟹ XP_063117800

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	108,916,064 - 108,965,223 (-)	NCBI

RefSeq Acc Id:

XM_063261732 ⟹ XP_063117802

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	108,916,064 - 108,947,254 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100213	(Get FASTA)	NCBI Sequence Viewer
	NP_001421225	(Get FASTA)	NCBI Sequence Viewer
	NP_001421226	(Get FASTA)	NCBI Sequence Viewer
	NP_001421227	(Get FASTA)	NCBI Sequence Viewer
	NP_001421228	(Get FASTA)	NCBI Sequence Viewer
	XP_006240385	(Get FASTA)	NCBI Sequence Viewer
	XP_038967951	(Get FASTA)	NCBI Sequence Viewer
	XP_038967952	(Get FASTA)	NCBI Sequence Viewer
	XP_038967953	(Get FASTA)	NCBI Sequence Viewer
	XP_063117799	(Get FASTA)	NCBI Sequence Viewer
	XP_063117800	(Get FASTA)	NCBI Sequence Viewer
	XP_063117802	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL81445	(Get FASTA)	NCBI Sequence Viewer
	EDL81446	(Get FASTA)	NCBI Sequence Viewer
	EDL81447	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000011662.5

RefSeq Acc Id:

NP_001100213 ⟸ NM_001106743

- UniProtKB:

D4A3T4 (UniProtKB/TrEMBL), A6JDQ1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSAQTSLAEKGLNPGLMCQESYACSGTDEAVFECDECCSLQCLRCEEELHRQERLRNHERIRLK
AGHVPYCDPCKGPNGHSPGVRQRAAVRCQTCKINLCLECQKRTHSGGNKRRHPVTVYHVSKVQE
SLEGEEMDEETKRRKMTERVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHLKVVSIFGNTGDG
KSHTLNHTFFHGREVFKTSPAQESCTVGVWAAHDPVHKVAVIDTEGLLGATVNLSQRTRLLLKV
LAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATTARCGLDVPLSTLGPAVIIFHE
TVHTQLLGSDHPSEAPEKLIQDRFRKLGRFPEAFSSIHYKGTRTYNPPTDFSGLRRALEQLLEN
NTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSSFFPDEYFTCSSLCLSCGAGCKNSMNHGK
EGVPHEAKSRCRYSHQYDNRVYTCKACYERGKEVSVVPKTSASTDSPWMGLAKYAWSGYVIECP
NCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDAFLKDNNNAAQRLLDGMNFMAQSVSELSL
GPTKAVTSWLTDQIAPAYWRPNSQILSCNQCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPE
RGWGPAPVRVCDNCYDARNVQLDVAEAQADDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVK
DAARPAYWVPDHEILHCHNCRKEFSVKLSKHHCRACGQGFCDECSHGRRAVPSRGWDHPVRVCF
NCNKKPGDL

hide sequence

RefSeq Acc Id:

XP_006240385 ⟸ XM_006240323

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSAQTSLAEKGLNPGLMCQESYACSGTDEAVFECDECCSLQCLRCEEELHRQERLRNHERIRLK
AGHVPYCDPCKGPNGHSPGVRQRAAVRCQTCKINLCLECQKRTHSGGNKRRHPVTVYHVSKVQE
SLEGEEMDEETKRRKMTERVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHLKVVSIFGNTGDG
KSHTLNHTFFHGREVFKTSPAQESCTVGVWAAHDPVHKVAVIDTEGLLGATVNLSQRTRLLLKV
LAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATTARCGLDVPLSTLGPAVIIFHE
TVHTQLLGSDHPSEAPEKLIQDRFRKLGRFPEAFSSIHYKGTRTYNPPTDFSGLRRALEQLLEN
NTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSSFFPDEYFTCSSLCLSCGAGCKNSMNHGK
EGVPHEAKSRCRYSHQYDNRVYTCKACYERGKEVSVVPKTSASTDSPWMGLAKYAWSGYVIECP
NCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDAFLKDNNNAAQRLLDGMNFMAQSVSELSL
GPTKAVTSWLTDQIAPAYWRPNSQILSCNQCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPE
RGWGPAPVRVCDNCYDARNVQLDVAEAQADDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVK
DAARPAYWVPDHEILHCHNCRKEFSVKLSKHHCRACGQGFCDECSHGRRAVPSRGWDHPVRVCF
NCNKKPGDL

hide sequence

Ensembl Acc Id:

ENSRNOP00000011662 ⟸ ENSRNOT00000011662

RefSeq Acc Id:	XP_038967953 ⟸ XM_039112025
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038967952 ⟸ XM_039112024
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038967951 ⟸ XM_039112023
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063117799 ⟸ XM_063261729
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063117800 ⟸ XM_063261730
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063117802 ⟸ XM_063261732
- Peptide Label:	isoform X3

Protein Domains

FYVE-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A3T4-F1-model_v2	AlphaFold	D4A3T4	1-777	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694714

Promoter ID:

EPDNEW_R5237

Type:

multiple initiation site

Name:

Zfyve1_1

Description:

zinc finger FYVE-type containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	107,080,534 - 107,080,594	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307795	AgrOrtholog
BioCyc Gene	G2FUF-36856	BioCyc
Ensembl Genes	ENSRNOG00000008614	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000011662.6	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
InterPro	Growth_fac_rcpt_N_dom	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	ZFYV1	UniProtKB/TrEMBL
	ZFYVE1_first_BBox1	UniProtKB/TrEMBL
	ZFYVE1_second_BBox1	UniProtKB/TrEMBL
	Znf_FYVE	UniProtKB/TrEMBL
	Znf_FYVE-rel	UniProtKB/TrEMBL
	Znf_FYVE_PHD	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
KEGG Report	rno:299188	UniProtKB/TrEMBL
NCBI Gene	299188	ENTREZGENE
PANTHER	PTHR46624	UniProtKB/TrEMBL
	ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
Pfam	ANCHR-like_BBOX	UniProtKB/TrEMBL
	FYVE	UniProtKB/TrEMBL
PhenoGen	Zfyve1	PhenoGen
PROSITE	ZF_FYVE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008614	RatGTEx
SMART	FYVE	UniProtKB/TrEMBL
Superfamily-SCOP	FYVE_PHD_ZnF	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
	SSF57184	UniProtKB/TrEMBL
UniProt	A6JDQ1	ENTREZGENE, UniProtKB/TrEMBL
	D4A3T4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-19	Zfyve1	zinc finger FYVE-type containing 1	Zfyve1	zinc finger, FYVE domain containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Zfyve1	zinc finger, FYVE domain containing 1	Zfyve1_predicted	zinc finger, FYVE domain containing 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Zfyve1_predicted	zinc finger, FYVE domain containing 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar