Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Neurodevelopmental Disorders | | ISO | WDFY3 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:28191889 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Neurodevelopmental Disorders | | ISO | WDFY3 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:28191889 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
3. | GOA pipeline | RGD automated data pipeline |
4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:9108238 | PMID:12477932 | PMID:15292400 | PMID:15342963 | PMID:20168092 | PMID:20417604 |
Wdfy3 (Rattus norvegicus - Norway rat) |
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WDFY3 (Homo sapiens - human) |
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Wdfy3 (Mus musculus - house mouse) |
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Wdfy3 (Chinchilla lanigera - long-tailed chinchilla) |
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WDFY3 (Pan paniscus - bonobo/pygmy chimpanzee) |
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WDFY3 (Canis lupus familiaris - dog) |
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LOC101974150 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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WDFY3 (Sus scrofa - pig) |
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WDFY3 (Chlorocebus sabaeus - green monkey) |
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Wdfy3 (Heterocephalus glaber - naked mole-rat) |
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Variants in Wdfy3
1373 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
D14Got147 |
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AA859616 |
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BE115792 |
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RH129962 |
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AFM350VD1 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 31 | 22 | 12 | 11 | 12 | 4 | 4 | 74 | 35 | 37 | 11 | 4 | |
Low | 3 | 12 | 35 | 29 | 8 | 29 | 4 | 7 | 4 | 4 | |||
Below cutoff |
RefSeq Transcripts | NM_001170551 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_039091826 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039091827 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039091828 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039091829 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039091830 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039091831 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063273048 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063273049 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063273050 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | BC091187 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BC105833 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CB720454 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CB759117 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000014 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000088047 ⟹ ENSRNOP00000075052 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000092709 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000109494 ⟹ ENSRNOP00000093405 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001170551 ⟹ NP_001164022 | ||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039091826 ⟹ XP_038947754 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039091827 ⟹ XP_038947755 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039091828 ⟹ XP_038947756 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039091829 ⟹ XP_038947757 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039091830 ⟹ XP_038947758 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039091831 ⟹ XP_038947759 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063273048 ⟹ XP_063129118 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063273049 ⟹ XP_063129119 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063273050 ⟹ XP_063129120 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001164022 | (Get FASTA) | NCBI Sequence Viewer |
XP_038947754 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038947755 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038947756 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038947757 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038947758 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038947759 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063129118 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063129119 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063129120 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000075052 | ||
ENSRNOP00000075052.2 | |||
ENSRNOP00000087230.1 | |||
ENSRNOP00000093405.1 |
RefSeq Acc Id: | NP_001164022 ⟸ NM_001170551 |
- UniProtKB: | A0A0G2K9M4 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000075052 ⟸ ENSRNOT00000088047 |
RefSeq Acc Id: | XP_038947757 ⟸ XM_039091829 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_038947759 ⟸ XM_039091831 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | XP_038947758 ⟸ XM_039091830 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_038947755 ⟸ XM_039091827 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I6A7K7 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038947756 ⟸ XM_039091828 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I6A7K7 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038947754 ⟸ XM_039091826 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I6A7K7 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | ENSRNOP00000093405 ⟸ ENSRNOT00000109494 |
RefSeq Acc Id: | XP_063129119 ⟸ XM_063273049 |
- Peptide Label: | isoform X6 |
RefSeq Acc Id: | XP_063129118 ⟸ XM_063273048 |
- Peptide Label: | isoform X5 |
RefSeq Acc Id: | XP_063129120 ⟸ XM_063273050 |
- Peptide Label: | isoform X7 |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1307097 | AgrOrtholog |
BioCyc Gene | G2FUF-16447 | BioCyc |
Ensembl Genes | ENSRNOG00000061121 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000088047 | ENTREZGENE |
ENSRNOT00000088047.2 | UniProtKB/TrEMBL | |
ENSRNOT00000092709.2 | UniProtKB/TrEMBL | |
ENSRNOT00000109494.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.1540.10 | UniProtKB/TrEMBL |
1.25.10.10 | UniProtKB/TrEMBL | |
2.130.10.10 | UniProtKB/TrEMBL | |
2.30.29.30 | UniProtKB/TrEMBL | |
3.30.40.10 | UniProtKB/TrEMBL | |
InterPro | ARM-like | UniProtKB/TrEMBL |
ARM-type_fold | UniProtKB/TrEMBL | |
BEACH_dom | UniProtKB/TrEMBL | |
BEACH_dom_sf | UniProtKB/TrEMBL | |
ConA-like_dom | UniProtKB/TrEMBL | |
PH-BEACH_dom | UniProtKB/TrEMBL | |
PH-like_dom_sf | UniProtKB/TrEMBL | |
WD40/YVTN_repeat-like_dom_sf | UniProtKB/TrEMBL | |
WD40_repeat | UniProtKB/TrEMBL | |
WD40_repeat_CS | UniProtKB/TrEMBL | |
WD40_repeat_dom_sf | UniProtKB/TrEMBL | |
Znf_FYVE | UniProtKB/TrEMBL | |
Znf_FYVE-rel | UniProtKB/TrEMBL | |
Znf_FYVE_PHD | UniProtKB/TrEMBL | |
Znf_RING/FYVE/PHD | UniProtKB/TrEMBL | |
NCBI Gene | 305164 | ENTREZGENE |
PANTHER | BLUE CHEESE | UniProtKB/TrEMBL |
WD REPEAT AND FYVE DOMAIN-CONTAINING PROTEIN 3 | UniProtKB/TrEMBL | |
Pfam | Beach | UniProtKB/TrEMBL |
FYVE | UniProtKB/TrEMBL | |
PH_BEACH | UniProtKB/TrEMBL | |
WD40 | UniProtKB/TrEMBL | |
PhenoGen | Wdfy3 | PhenoGen |
PROSITE | BEACH | UniProtKB/TrEMBL |
PH_BEACH | UniProtKB/TrEMBL | |
WD_REPEATS_1 | UniProtKB/TrEMBL | |
WD_REPEATS_2 | UniProtKB/TrEMBL | |
WD_REPEATS_REGION | UniProtKB/TrEMBL | |
ZF_FYVE | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000061121 | RatGTEx |
SMART | Beach | UniProtKB/TrEMBL |
FYVE | UniProtKB/TrEMBL | |
WD40 | UniProtKB/TrEMBL | |
Superfamily-SCOP | Beige_BEACH | UniProtKB/TrEMBL |
ConA_like_lec_gl | UniProtKB/TrEMBL | |
FYVE_PHD_ZnF | UniProtKB/TrEMBL | |
PH domain-like | UniProtKB/TrEMBL | |
SSF48371 | UniProtKB/TrEMBL | |
WD40_like | UniProtKB/TrEMBL | |
UniProt | A0A0G2K9M4 | ENTREZGENE, UniProtKB/TrEMBL |
A0A8I6A7K7 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I6AIP5_RAT | UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2008-04-30 | Wdfy3 | WD repeat and FYVE domain containing 3 | Wdfy3_predicted | WD repeat and FYVE domain containing 3 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-12 | Wdfy3_predicted | WD repeat and FYVE domain containing 3 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |