Wdfy3 (WD repeat and FYVE domain containing 3) - Rat Genome Database

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Gene: Wdfy3 (WD repeat and FYVE domain containing 3) Rattus norvegicus
Analyze
Symbol: Wdfy3
Name: WD repeat and FYVE domain containing 3
RGD ID: 1307097
Description: Predicted to enable 1-phosphatidylinositol binding activity and beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity. Predicted to be involved in aggrephagy. Predicted to be located in several cellular components, including autophagosome membrane; inclusion body; and nucleus. Predicted to be part of Atg12-Atg5-Atg16 complex. Human ortholog(s) of this gene implicated in primary autosomal dominant microcephaly 18. Orthologous to human WDFY3 (WD repeat and FYVE domain containing 3); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC305164; WD repeat and FYVE domain-containing protein 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8147,873,946 - 8,115,002 (+)NCBIGRCr8
mRatBN7.2147,578,245 - 7,810,491 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl147,606,628 - 7,810,482 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx147,572,843 - 7,776,316 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0148,873,072 - 9,076,548 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0147,569,218 - 7,772,685 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0149,169,409 - 9,384,835 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl149,141,512 - 9,381,870 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0149,103,906 - 9,346,391 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4148,916,412 - 9,060,345 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1148,859,864 - 9,059,829 (+)NCBI
Celera147,728,559 - 7,930,146 (+)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
1-nitropyrene  (ISO)
17alpha-ethynylestradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
dexamethasone  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
ferric oxide  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
glyphosate  (EXP)
hydrogen cyanide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
methapyrilene  (EXP,ISO)
methotrexate  (ISO)
N-ethyl-N-nitrosourea  (ISO)
oxaliplatin  (EXP)
paracetamol  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
potassium cyanide  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
thimerosal  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
troglitazone  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
aggrephagy  (IBA,ISO)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9108238   PMID:12477932   PMID:15292400   PMID:15342963   PMID:20168092   PMID:20417604  


Genomics

Comparative Map Data
Wdfy3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8147,873,946 - 8,115,002 (+)NCBIGRCr8
mRatBN7.2147,578,245 - 7,810,491 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl147,606,628 - 7,810,482 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx147,572,843 - 7,776,316 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0148,873,072 - 9,076,548 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0147,569,218 - 7,772,685 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0149,169,409 - 9,384,835 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl149,141,512 - 9,381,870 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0149,103,906 - 9,346,391 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4148,916,412 - 9,060,345 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1148,859,864 - 9,059,829 (+)NCBI
Celera147,728,559 - 7,930,146 (+)NCBICelera
Cytogenetic Map14p22NCBI
WDFY3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38484,669,597 - 84,966,690 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl484,668,765 - 84,966,690 (-)EnsemblGRCh38hg38GRCh38
GRCh37485,590,750 - 85,887,843 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36485,809,719 - 86,106,568 (-)NCBINCBI36Build 36hg18NCBI36
Celera482,881,176 - 83,177,858 (-)NCBICelera
Cytogenetic Map4q21.23NCBI
HuRef481,332,682 - 81,629,739 (-)NCBIHuRef
CHM1_1485,567,640 - 85,864,722 (-)NCBICHM1_1
T2T-CHM13v2.0487,999,582 - 88,296,708 (-)NCBIT2T-CHM13v2.0
Wdfy3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395101,980,819 - 102,220,081 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5101,980,822 - 102,217,787 (-)EnsemblGRCm39 Ensembl
GRCm385101,832,953 - 102,072,215 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5101,832,956 - 102,069,921 (-)EnsemblGRCm38mm10GRCm38
MGSCv375102,261,972 - 102,498,940 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365102,075,887 - 102,310,223 (-)NCBIMGSCv36mm8
Celera599,157,264 - 99,365,659 (-)NCBICelera
Cytogenetic Map5E5NCBI
cM Map548.95NCBI
Wdfy3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554744,870,835 - 5,042,310 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554744,764,902 - 5,045,421 (+)NCBIChiLan1.0ChiLan1.0
WDFY3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2345,082,812 - 45,378,826 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1445,269,481 - 45,565,504 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0439,215,474 - 39,511,870 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1445,099,130 - 45,361,610 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl445,170,700 - 45,361,599 (+)Ensemblpanpan1.1panPan2
WDFY3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1328,430,856 - 8,662,988 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl328,433,080 - 8,695,859 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3233,223,630 - 33,457,071 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0328,450,814 - 8,685,610 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl328,452,924 - 8,685,723 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1328,532,130 - 8,765,706 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0328,391,953 - 8,625,308 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03231,332,260 - 31,566,305 (+)NCBIUU_Cfam_GSD_1.0
LOC101974150
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052853,871,502 - 3,988,633 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367381,841 - 147,264 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493673831,426 - 150,463 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDFY3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8133,675,345 - 133,937,221 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18133,665,585 - 133,939,860 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28143,175,314 - 143,415,028 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDFY3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1733,031,762 - 33,331,475 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl733,030,069 - 33,237,701 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603711,665,508 - 11,968,139 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdfy3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249001,788,338 - 2,008,811 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249001,785,397 - 2,106,455 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wdfy3
1373 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:435
Count of miRNA genes:219
Interacting mature miRNAs:288
Transcripts:ENSRNOT00000033194
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14121760611030812Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14121760616960180Rat
724541Niddm53Non-insulin dependent diabetes mellitus QTL 530.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1438130749088978Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)14381307418274691Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14381307418274691Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat

Markers in Region
D14Got147  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2764,094,411 - 64,094,511 (-)MAPPERmRatBN7.2
mRatBN7.2147,591,508 - 7,591,606 (+)MAPPERmRatBN7.2
mRatBN7.2764,094,411 - 64,094,511 (+)MAPPERmRatBN7.2
Rnor_6.0149,154,752 - 9,154,849NCBIRnor6.0
Rnor_6.0771,539,958 - 71,540,057NCBIRnor6.0
Rnor_5.0149,117,122 - 9,117,219UniSTSRnor5.0
Rnor_5.0771,711,122 - 71,711,221UniSTSRnor5.0
RGSC_v3.4148,844,743 - 8,844,840UniSTSRGSC3.4
RGSC_v3.4768,257,785 - 68,257,884UniSTSRGSC3.4
Celera147,713,426 - 7,713,523UniSTS
Cytogenetic Map14p22UniSTS
AA859616  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2147,810,207 - 7,810,405 (+)MAPPERmRatBN7.2
Rnor_6.0149,384,552 - 9,384,749NCBIRnor6.0
Rnor_5.0149,346,108 - 9,346,305UniSTSRnor5.0
RGSC_v3.4149,062,867 - 9,063,064UniSTSRGSC3.4
Celera147,929,863 - 7,930,060UniSTS
RH 3.4 Map14131.19UniSTS
Cytogenetic Map14p22UniSTS
BE115792  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2147,687,594 - 7,687,766 (+)MAPPERmRatBN7.2
Rnor_6.0149,262,132 - 9,262,303NCBIRnor6.0
Rnor_5.0149,224,261 - 9,224,432UniSTSRnor5.0
RGSC_v3.4148,940,554 - 8,940,725UniSTSRGSC3.4
Celera147,809,223 - 7,809,394UniSTS
RH 3.4 Map14130.69UniSTS
Cytogenetic Map14p22UniSTS
RH129962  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2147,801,561 - 7,801,723 (+)MAPPERmRatBN7.2
mRatBN7.22181,974,533 - 181,974,700 (+)MAPPERmRatBN7.2
Rnor_6.02195,576,536 - 195,576,702NCBIRnor6.0
Rnor_6.0149,375,572 - 9,375,733NCBIRnor6.0
Rnor_5.0149,337,128 - 9,337,289UniSTSRnor5.0
Rnor_5.02215,055,230 - 215,055,396UniSTSRnor5.0
RGSC_v3.42189,308,160 - 189,308,326UniSTSRGSC3.4
RGSC_v3.4149,054,101 - 9,054,262UniSTSRGSC3.4
Celera147,921,260 - 7,921,421UniSTS
Celera2174,524,236 - 174,524,402UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map14p22UniSTS
AFM350VD1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21592,537,764 - 92,538,202 (+)MAPPERmRatBN7.2
mRatBN7.2147,701,468 - 7,702,102 (+)MAPPERmRatBN7.2
Rnor_6.0149,276,013 - 9,276,645NCBIRnor6.0
Rnor_6.015100,586,361 - 100,586,798NCBIRnor6.0
Rnor_5.015104,043,439 - 104,043,876UniSTSRnor5.0
Rnor_5.0149,237,569 - 9,238,201UniSTSRnor5.0
RGSC_v3.4148,954,774 - 8,955,406UniSTSRGSC3.4
RGSC_v3.415100,232,059 - 100,232,496UniSTSRGSC3.4
Celera1591,402,387 - 91,402,824UniSTS
Celera147,822,897 - 7,823,529UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map14p22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 31 22 12 11 12 4 4 74 35 37 11 4
Low 3 12 35 29 8 29 4 7 4 4
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000088047   ⟹   ENSRNOP00000075052
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl147,606,628 - 7,810,482 (+)Ensembl
Rnor_6.0 Ensembl149,226,125 - 9,381,298 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092709
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl147,606,628 - 7,810,482 (+)Ensembl
Rnor_6.0 Ensembl149,141,512 - 9,381,870 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109494   ⟹   ENSRNOP00000093405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl147,606,628 - 7,810,482 (+)Ensembl
RefSeq Acc Id: NM_001170551   ⟹   NP_001164022
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8147,911,151 - 8,115,002 (+)NCBI
mRatBN7.2147,606,628 - 7,810,491 (+)NCBI
Rnor_6.0149,169,409 - 9,384,835 (+)NCBI
Rnor_5.0149,103,906 - 9,346,391 (+)NCBI
Celera147,728,559 - 7,930,146 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039091826   ⟹   XP_038947754
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8147,911,271 - 8,114,768 (+)NCBI
mRatBN7.2147,606,749 - 7,810,491 (+)NCBI
RefSeq Acc Id: XM_039091827   ⟹   XP_038947755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8147,882,762 - 8,114,768 (+)NCBI
mRatBN7.2147,578,355 - 7,810,491 (+)NCBI
RefSeq Acc Id: XM_039091828   ⟹   XP_038947756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8147,873,946 - 8,114,768 (+)NCBI
mRatBN7.2147,606,628 - 7,810,491 (+)NCBI
RefSeq Acc Id: XM_039091829   ⟹   XP_038947757
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8147,943,320 - 8,114,768 (+)NCBI
mRatBN7.2147,578,245 - 7,810,491 (+)NCBI
RefSeq Acc Id: XM_039091830   ⟹   XP_038947758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8147,943,320 - 8,114,768 (+)NCBI
mRatBN7.2147,578,245 - 7,810,491 (+)NCBI
RefSeq Acc Id: XM_039091831   ⟹   XP_038947759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8147,943,320 - 8,114,768 (+)NCBI
mRatBN7.2147,578,245 - 7,810,491 (+)NCBI
RefSeq Acc Id: XM_063273048   ⟹   XP_063129118
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8147,943,320 - 8,114,768 (+)NCBI
RefSeq Acc Id: XM_063273049   ⟹   XP_063129119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8147,943,320 - 8,114,768 (+)NCBI
RefSeq Acc Id: XM_063273050   ⟹   XP_063129120
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8147,943,320 - 8,064,937 (+)NCBI
RefSeq Acc Id: NP_001164022   ⟸   NM_001170551
- UniProtKB: A0A0G2K9M4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075052   ⟸   ENSRNOT00000088047
RefSeq Acc Id: XP_038947757   ⟸   XM_039091829
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038947759   ⟸   XM_039091831
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038947758   ⟸   XM_039091830
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038947755   ⟸   XM_039091827
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A7K7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947756   ⟸   XM_039091828
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A7K7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947754   ⟸   XM_039091826
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A7K7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000093405   ⟸   ENSRNOT00000109494
RefSeq Acc Id: XP_063129119   ⟸   XM_063273049
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063129118   ⟸   XM_063273048
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063129120   ⟸   XM_063273050
- Peptide Label: isoform X7
Protein Domains
BEACH   BEACH-type PH   FYVE-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307097 AgrOrtholog
BioCyc Gene G2FUF-16447 BioCyc
Ensembl Genes ENSRNOG00000061121 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000088047 ENTREZGENE
  ENSRNOT00000088047.2 UniProtKB/TrEMBL
  ENSRNOT00000092709.2 UniProtKB/TrEMBL
  ENSRNOT00000109494.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1540.10 UniProtKB/TrEMBL
  1.25.10.10 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  BEACH_dom UniProtKB/TrEMBL
  BEACH_dom_sf UniProtKB/TrEMBL
  ConA-like_dom UniProtKB/TrEMBL
  PH-BEACH_dom UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  Znf_FYVE UniProtKB/TrEMBL
  Znf_FYVE-rel UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene 305164 ENTREZGENE
PANTHER BLUE CHEESE UniProtKB/TrEMBL
  WD REPEAT AND FYVE DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
Pfam Beach UniProtKB/TrEMBL
  FYVE UniProtKB/TrEMBL
  PH_BEACH UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PhenoGen Wdfy3 PhenoGen
PROSITE BEACH UniProtKB/TrEMBL
  PH_BEACH UniProtKB/TrEMBL
  WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
  ZF_FYVE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000061121 RatGTEx
SMART Beach UniProtKB/TrEMBL
  FYVE UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP Beige_BEACH UniProtKB/TrEMBL
  ConA_like_lec_gl UniProtKB/TrEMBL
  FYVE_PHD_ZnF UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
  WD40_like UniProtKB/TrEMBL
UniProt A0A0G2K9M4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A7K7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AIP5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Wdfy3  WD repeat and FYVE domain containing 3   Wdfy3_predicted  WD repeat and FYVE domain containing 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Wdfy3_predicted  WD repeat and FYVE domain containing 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED