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Gene: Chmp1a (charged multivesicular body protein 1A) Rattus norvegicus
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Symbol: Chmp1a
Name: charged multivesicular body protein 1A
Description: Predicted to have protein domain specific binding activity and protein homodimerization activity. Predicted to be involved in several processes, including mitotic nuclear division; negative regulation of gene expression; and regulation of microtubule cytoskeleton organization. Predicted to localize to the endosome; microtubule organizing center; and nucleus. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 8. Orthologous to human CHMP1A (charged multivesicular body protein 1A); PARTICIPATES IN endocytosis pathway; INTERACTS WITH 2,4-dinitrotoluene; 2-methoxyethanol; gentamycin.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: chromatin modifying protein 1A; LOC365024; Pcoln3; procollagen (type III) N-endopeptidase
Orthologs:
Homo sapiens (human) : CHMP1A (charged multivesicular body protein 1A)  HGNC  Alliance
Mus musculus (house mouse) : Chmp1a (charged multivesicular body protein 1A)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Chmp1a (charged multivesicular body protein 1A)
Pan paniscus (bonobo/pygmy chimpanzee) : CHMP1A (charged multivesicular body protein 1A)
Canis lupus familiaris (dog) : CHMP1A (charged multivesicular body protein 1A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Chmp1a (charged multivesicular body protein 1A)
Sus scrofa (pig) : CHMP1A (charged multivesicular body protein 1A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01956,001,724 - 56,010,004 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01966,707,177 - 66,715,457 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41953,521,981 - 53,530,261 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11953,529,029 - 53,531,632 (-)NCBI
Celera1950,473,734 - 50,481,997 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Chmp1a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1311083
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.