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ONTOLOGY REPORT - ANNOTATIONS


Term:autophagy
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Accession:GO:0006914 term browser browse the term
Definition:The cellular catabolic process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation.
Synonyms:alt_id: GO:0016238
 xref: Wikipedia:Autophagy_(cellular)



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autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07040864.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G AC108595.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 7:122,951,378...122,953,062 JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:3715977 (MGI:3715542|PMID:17589504)
PMID:21873635
RGD PMID:17589504 PMID:21873635 MGI:3715542, RGD:13792537 NCBI chr 3:77,700,936...77,890,221
Ensembl chr 3:77,700,936...77,890,221
JBrowse link
G Anxa7 annexin A7 involved_in ISO (PMID:24007983) RGD PMID:24007983 NCBI chr15:3,821,798...3,849,659
Ensembl chr15:3,821,845...3,849,385
JBrowse link
G Arsa arylsulfatase A IDA RGD PMID:8037 RGD:1599235 NCBI chr 7:120,542,788...120,547,577
Ensembl chr 7:120,543,362...120,548,783
JBrowse link
G Arsb arylsulfatase B IDA RGD PMID:8037 RGD:1599235 NCBI chr 2:25,002,210...25,162,675
Ensembl chr 2:25,002,346...25,162,671
JBrowse link
G Atg10 autophagy related 10 involved_in ISO (PMID:15657430), (PMID:17256008) RGD PMID:15657430 PMID:17256008 NCBI chr 2:22,109,304...22,398,313
Ensembl chr 2:22,108,426...22,398,233
JBrowse link
G Atg12 autophagy related 12 IMP RGD PMID:18059433 RGD:2301217 NCBI chr18:39,452,247...39,462,424
Ensembl chr18:39,452,191...39,462,418
JBrowse link
G Atg14 autophagy related 14 involved_in ISO (MGI:4438180|PMID:19270696), (MGI:5619471|PMID:19270693) RGD PMID:19270693 PMID:19270696 MGI:4438180 MGI:5619471 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Atg16l2 autophagy related 16-like 2 NOT|involved_in ISO (MGI:6436405|PMID:22082872) RGD PMID:22082872 MGI:6436405 NCBI chr 1:155,687,386...155,703,419
Ensembl chr 1:155,684,564...155,703,420
JBrowse link
G Atg3 autophagy related 3 IEP RGD PMID:17110912 RGD:1643237 NCBI chr11:55,624,928...55,653,212
Ensembl chr11:55,624,917...55,653,224
JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in ISO
IEA
(PMID:30661429)
GO_REF:0000043
RGD
UniProt
PMID:30661429 GO_REF:0000043 NCBI chr  X:104,665,345...104,765,271
Ensembl chr  X:104,665,345...104,765,268
JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO (PMID:18387192), (PMID:26378241), (PMID:27527864), (PMID:28821708)
(MGI:4829568|PMID:20577052)
RGD PMID:18387192 PMID:20577052 PMID:26378241 PMID:27527864 PMID:28821708 MGI:4829568 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103
JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in IEA
ISO
GO_REF:0000043
(PMID:30661429)
UniProt
RGD
PMID:30661429 GO_REF:0000043 NCBI chr 5:113,867,218...113,935,534
Ensembl chr 5:113,867,092...113,934,830
JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in IEA
ISO
GO_REF:0000043
(PMID:30661429)
UniProt
RGD
PMID:30661429 GO_REF:0000043 NCBI chr 8:19,807,733...19,817,321
Ensembl chr 8:19,807,766...19,817,321
JBrowse link
G Atg5 autophagy related 5 involved_in IMP
ISO
ISS
UniProtKB:O95352 (PMID:26812546), (PMID:28389568)
(MGI:2137756|PMID:11266458), (MGI:5509101|PMID:23878245)
GO_REF:0000024
RGD
UniProt
PMID:11266458 PMID:23878245 PMID:26812546 PMID:28389568 PMID:18059433 GO_REF:0000024 MGI:2137756 MGI:5509101, RGD:2301217 NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
UniProtKB:Q9H1Y0 (PMID:20543840), (PMID:24681637), (PMID:28389568)
(PMID:25327288)
(MGI:4420830|PMID:20080761), (MGI:6208175|PMID:29937374)
MGI:2137515|MGI:2176052|MGI:2176073|MGI:3587769|MGI:3587771 (MGI:3587473|PMID:15866887), (MGI:3653078|PMID:16885219), (MGI:3711608|PMID:17450150), (MGI:3722981|PMID:17726112), (MGI:4829568|PMID:20577052)
UniProt
RGD
PMID:15866887 PMID:16885219 PMID:17450150 PMID:17726112 PMID:20080761 More... GO_REF:0000024 MGI:3587473 MGI:3653078 MGI:3711608 MGI:3722981 MGI:4420830 MGI:4829568 MGI:6208175 NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Atg9a autophagy related 9A acts_upstream_of_or_within
involved_in
ISO MGI:4417824 (MGI:4414713|PMID:19926846)
(MGI:6791812|PMID:27587839)
RGD PMID:19926846 PMID:27587839 MGI:4414713 MGI:6791812 NCBI chr 9:76,677,403...76,688,035
Ensembl chr 9:76,677,404...76,687,986
JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:27278822)
(MGI:5881999|PMID:27278822)
RGD PMID:27278822 MGI:5881999 NCBI chr 5:153,292,722...153,312,143
Ensembl chr 5:153,292,751...153,312,139
JBrowse link
G Becn1 beclin 1 acts_upstream_of_or_within
involved_in
IMP
ISO
ISS
(PMID:28747345)
(PMID:23184933), (PMID:23629966), (PMID:24056303)
(MGI:5490676|PMID:23629966), (MGI:5619437|PMID:23364696)
(MGI:2385984|PMID:12372286), (MGI:3715542|PMID:17589504)
GO_REF:0000024
RGD
UniProt
PMID:12372286 PMID:17589504 PMID:23184933 PMID:23364696 PMID:23629966 More... GO_REF:0000024 MGI:2385984 MGI:3715542 MGI:5490676 MGI:5619437, RGD:1643194, RGD:11558011 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Becn2 beclin 2 involved_in
acts_upstream_of_or_within
ISO (PMID:23954414)
MGI:5550535 (MGI:5528919|PMID:23954414)
RGD PMID:23954414 MGI:5528919 NCBI chr13:87,843,528...87,892,343
Ensembl chr13:87,844,531...87,845,787
JBrowse link
G Chmp1a charged multivesicular body protein 1A involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr19:51,238,153...51,246,433
Ensembl chr19:51,238,160...51,246,436
JBrowse link
G Chmp1b charged multivesicular body protein 1B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr18:60,740,349...60,742,879 JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 1:73,660,045...73,662,894
Ensembl chr 1:73,660,046...73,662,452
JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr11:3,338,007...3,364,357
Ensembl chr11:3,337,494...3,385,181
JBrowse link
G Chmp3 charged multivesicular body protein 3 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 4:103,576,453...103,622,566
Ensembl chr 4:103,576,515...103,623,959
JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:17984323), (PMID:24095276) RGD PMID:17984323 PMID:24095276 NCBI chr 3:143,170,822...143,211,376
Ensembl chr 3:143,170,902...143,210,844
JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 2:91,391,729...91,428,652
Ensembl chr 2:91,388,530...91,428,668
JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 5:56,081,385...56,098,529
Ensembl chr 5:56,081,343...56,098,529
JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr10:105,191,972...105,197,642
Ensembl chr10:105,191,950...105,197,640
JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr15:44,790,983...44,806,216
Ensembl chr15:44,790,996...44,806,216
JBrowse link
G Cltc clathrin heavy chain involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:71,517,661...71,574,591
Ensembl chr10:71,517,663...71,573,737
JBrowse link
G Ctsb cathepsin B IEP RGD PMID:18567942 RGD:2315511 NCBI chr15:37,389,636...37,410,508
Ensembl chr15:37,389,629...37,410,500
JBrowse link
G Dap death-associated protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:82,199,206...82,251,771
Ensembl chr 2:82,199,280...82,251,752
JBrowse link
G Dram2 DNA-damage regulated autophagy modulator 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:194,035,624...194,064,415
Ensembl chr 2:194,035,818...194,063,403
JBrowse link
G Drd2 dopamine receptor D2 IDA RGD PMID:26649942 RGD:13506953 NCBI chr 8:49,708,903...49,772,888
Ensembl chr 8:49,708,927...49,772,875
JBrowse link
G Drd3 dopamine receptor D3 IMP RGD PMID:26649942 RGD:13506953 NCBI chr11:56,879,689...56,931,901
Ensembl chr11:56,879,689...56,940,596
JBrowse link
G Ei24 EI24, autophagy associated transmembrane protein acts_upstream_of_or_within ISO MGI:2176173|MGI:5475023 (MGI:5468390|PMID:23074225) RGD PMID:23074225 MGI:5468390 NCBI chr 8:36,494,289...36,510,653
Ensembl chr 8:36,494,289...36,510,571
JBrowse link
G Epg5 ectopic P-granules autophagy protein 5 homolog acts_upstream_of_or_within ISO MGI:5505596 (MGI:5488852|PMID:23479740) RGD PMID:23479740 MGI:5488852 NCBI chr18:71,403,990...71,502,079
Ensembl chr18:71,404,010...71,501,502
JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO MGI:2182627 (MGI:5607479|PMID:24914213) RGD PMID:24914213 MGI:5607479 NCBI chr 1:5,727,111...5,845,338
Ensembl chr 1:5,727,066...5,920,555
JBrowse link
G Fnbp1l formin binding protein 1-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:210,647,241...210,748,203
Ensembl chr 2:210,647,246...210,738,455
JBrowse link
G Foxo1 forkhead box O1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:136,312,168...136,390,603
Ensembl chr 2:136,312,168...136,387,790
JBrowse link
G Gba glucosylceramidase beta involved_in
acts_upstream_of_or_within
ISO (PMID:27378698)
(MGI:5501380|PMID:23707074)
(MGI:5817293|PMID:27378698)
RGD PMID:23707074 PMID:27378698 MGI:5501380 MGI:5817293 NCBI chr 2:174,609,437...174,615,457
Ensembl chr 2:174,609,403...174,618,263
JBrowse link
G Gramd1a GRAM domain containing 1A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:86,367,001...86,393,348
Ensembl chr 1:86,367,001...86,393,336
JBrowse link
G Hap1 huntingtin-associated protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:85,277,890...85,286,126
Ensembl chr10:85,277,890...85,286,126
JBrowse link
G Hist3h2a histone cluster 3, H2a involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:43,733,702...43,735,254
Ensembl chr10:43,733,668...43,744,874
JBrowse link
G Hmg1l1 high-mobility group (nonhistone chromosomal) protein 1-like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:55,045,885...55,047,145
Ensembl chr19:55,045,869...55,047,145
JBrowse link
G Hmgb1 high mobility group box 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565
JBrowse link
G Itgb4 integrin subunit beta 4 involved_in IEA
ISO
GO_REF:0000107
(PMID:24007983)
Ensembl
RGD
PMID:24007983 GO_REF:0000107 NCBI chr10:101,206,657...101,243,012
Ensembl chr10:101,206,665...101,243,012
JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 involved_in ISO (MGI:3038873|PMID:12221139) RGD PMID:12221139 MGI:3038873 NCBI chr  X:117,173,097...117,222,090
Ensembl chr  X:117,057,606...117,260,522
JBrowse link
G LOC108349189 high mobility group protein B1 pseudogene involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:107,671,273...107,672,015
Ensembl chr  X:107,671,272...107,672,535
JBrowse link
G LOC108350839 high mobility group protein B1-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:91,306,902...91,309,095 JBrowse link
G LOC690000 similar to CG3740-PA involved_in ISO (PMID:26136767) RGD PMID:26136767 NCBI chr 1:90,873,542...90,887,205
Ensembl chr 1:90,873,549...90,886,208
JBrowse link
G LOC690117 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:34,028,487...34,030,715
Ensembl chr16:34,028,446...34,030,648
JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha IDA RGD PMID:16420522 RGD:1643189 NCBI chr 3:143,783,024...143,784,670
Ensembl chr 3:143,783,024...143,784,670
JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO
IEA
(PMID:23629966)
(MGI:5490676|PMID:23629966)
GO_REF:0000043
RGD
UniProt
PMID:23629966 GO_REF:0000043 MGI:5490676 NCBI chr19:49,665,795...49,673,655
Ensembl chr19:49,665,791...49,677,690
JBrowse link
G Nhlrc1 NHL repeat containing E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO MGI:3808349 (MGI:5607479|PMID:24914213) RGD PMID:24914213 MGI:5607479 NCBI chr17:17,674,375...17,675,565
Ensembl chr17:17,674,319...17,677,148
JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of_or_within ISO UniProtKB:P10636 (PMID:19074461) RGD PMID:19074461 NCBI chr18:3,379,482...3,425,100
Ensembl chr18:3,379,482...3,425,049
JBrowse link
G Nrbf2 nuclear receptor binding factor 2 involved_in ISO
IEA
IBA
(PMID:24785657)
GO_REF:0000002
(MGI:5634877|PMID:24849286)
PMID:21873635
RGD
InterPro
PMID:24785657 PMID:24849286 PMID:21873635 GO_REF:0000002 MGI:5634877, RGD:13792537 NCBI chr20:21,308,606...21,326,878
Ensembl chr20:21,308,576...21,326,818
JBrowse link
G Optn optineurin involved_in IEA GO_REF:0000104
GO_REF:0000043
UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr17:73,209,572...73,260,251
Ensembl chr17:73,209,575...73,260,251
JBrowse link
G Park7 Parkinsonism associated deglycase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970
JBrowse link
G Phf23 PHD finger protein 23 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:54,718,608...54,722,784
Ensembl chr10:54,717,724...54,722,782
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 acts_upstream_of_or_within ISO (PMID:25327288) RGD PMID:25327288 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048
JBrowse link
G Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:99,594,600...99,699,772
Ensembl chr 8:99,594,644...99,699,663
JBrowse link
G Pmp22 peripheral myelin protein 22 acts_upstream_of_or_within ISO MGI:1856217|MGI:2447704 (MGI:3575390|PMID:14627652), (MGI:3701167|PMID:17174099), (MGI:5605930|PMID:25014022) RGD PMID:14627652 PMID:17174099 PMID:25014022 MGI:3575390 MGI:3701167 MGI:5605930 NCBI chr10:47,795,709...47,825,715
Ensembl chr10:47,795,709...47,825,714
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:54,240,298...54,275,978
Ensembl chr 2:54,240,137...54,275,978
JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:119,807,992...119,879,987
Ensembl chr 5:119,813,226...119,879,543
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO MGI:1930934 (MGI:3044229|PMID:15123735) RGD PMID:15123735 MGI:3044229 NCBI chr 6:103,323,014...103,375,088
Ensembl chr 6:103,323,120...103,371,650
JBrowse link
G Rab12 RAB12, member RAS oncogene family involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:106,480,301...106,506,895
Ensembl chr 9:106,480,301...106,506,910
JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO
ISS
(PMID:22939626)
GO_REF:0000024
RGD
UniProt
PMID:22939626 GO_REF:0000024 NCBI chr14:94,422,219...94,448,799
Ensembl chr14:94,415,275...94,448,248
JBrowse link
G Rab39a RAB39A, member RAS oncogene family involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:54,088,744...54,105,756
Ensembl chr 8:54,088,129...54,106,483
JBrowse link
G Rab8a RAB8A, member RAS oncogene family involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:17,654,027...17,675,385
Ensembl chr16:17,654,034...17,675,678
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 acts_upstream_of_or_within
involved_in
ISO MGI:2176173|MGI:3526069 (MGI:6323456|PMID:31006538)
(MGI:3796758|PMID:18443221)
RGD PMID:18443221 PMID:31006538 MGI:3796758 MGI:6323456 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Retreg1 reticulophagy regulator 1 acts_upstream_of_or_within ISO (MGI:6370289|PMID:31446166) RGD PMID:31446166 MGI:6370289 NCBI chr 2:76,335,609...76,474,817
Ensembl chr 2:76,335,609...76,493,898
JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISO
IEA
ISS
IBA
(PMID:24549040)
GO_REF:0000107
GO_REF:0000024
PMID:21873635
RGD
Ensembl
UniProt
PMID:24549040 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 5:49,766,340...49,791,434
Ensembl chr 5:49,766,325...49,791,408
JBrowse link
G RGD1563668 similar to High mobility group protein 1 (HMG-1) involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:39,768,658...39,769,408
Ensembl chr10:39,768,658...39,769,293
JBrowse link
G Rnf166 ring finger protein 166 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:50,529,434...50,539,274
Ensembl chr19:50,529,434...50,539,274
JBrowse link
G Rnf185 ring finger protein 185 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:78,292,517...78,329,832
Ensembl chr14:78,292,516...78,329,864
JBrowse link
G Rubcn rubicon autophagy regulator involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:67,907,534...67,964,347
Ensembl chr11:67,907,516...67,964,314
JBrowse link
G S100a8 S100 calcium binding protein A8 involved_in ISS
ISO
GO_REF:0000024
(PMID:19935772)
UniProt
RGD
PMID:19935772 GO_REF:0000024 NCBI chr 2:176,166,517...176,167,645
Ensembl chr 2:176,167,124...176,167,643
JBrowse link
G S100a9 S100 calcium binding protein A9 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:19935772)
Ensembl
UniProt
RGD
PMID:19935772 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:176,190,361...176,193,182
Ensembl chr 2:176,190,361...176,193,230
JBrowse link
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:9,229,687...9,264,837
Ensembl chr 3:9,229,687...9,264,273
JBrowse link
G Sec16b SEC16 homolog B, endoplasmic reticulum export factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:69,665,757...69,727,199
Ensembl chr13:69,684,291...69,727,196
JBrowse link
G Sirt2 sirtuin 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:84,053,883...84,076,975
Ensembl chr 1:84,052,903...84,076,975
JBrowse link
G Sqstm1 sequestosome 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:4819475|PMID:20421418), (MGI:5009358|PMID:20173742)
(PMID:17580304), (PMID:20452972)
UniProt
RGD
PMID:17580304 PMID:20173742 PMID:20421418 PMID:20452972 GO_REF:0000024 MGI:4819475 MGI:5009358 NCBI chr10:34,525,517...34,536,685
Ensembl chr10:34,525,519...34,536,673
JBrowse link
G Srpx sushi-repeat-containing protein, X-linked acts_upstream_of_or_within ISO MGI:3706175 (MGI:3852261|PMID:19368996) RGD PMID:19368996 MGI:3852261 NCBI chr  X:12,676,984...12,751,296
Ensembl chr  X:12,566,645...12,747,882
JBrowse link
G Stk11 serine/threonine kinase 11 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:9,574,553...9,591,315
Ensembl chr 7:9,575,269...9,591,315
JBrowse link
G Syt11 synaptotagmin 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:5881999|PMID:27278822)
(PMID:27278822)
UniProt
RGD
PMID:27278822 GO_REF:0000024 MGI:5881999 NCBI chr 2:174,206,032...174,232,540
Ensembl chr 2:174,206,191...174,231,964
JBrowse link
G Tbc1d5 TBC1 domain family, member 5 involved_in ISO (PMID:22354992) RGD PMID:22354992 NCBI chr 9:3,503,328...4,017,131
Ensembl chr 9:3,513,623...4,016,913
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO (MGI:6296816|PMID:23908015) RGD PMID:23908015 MGI:6296816 NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:201,127,034...201,138,742
JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISO
ISS
(PMID:21575909)
GO_REF:0000024
RGD
UniProt
PMID:21575909 GO_REF:0000024 NCBI chr12:10,391,587...10,420,462
Ensembl chr12:10,391,696...10,419,611
JBrowse link
G Tgfbrap1 transforming growth factor, beta receptor associated protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:45,320,930...45,371,329
Ensembl chr 9:45,320,930...45,371,311
JBrowse link
G Tm9sf1 transmembrane 9 superfamily member 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:29,127,585...29,135,349
Ensembl chr15:29,127,584...29,135,349
JBrowse link
G Tmbim6 transmembrane BAX inhibitor motif containing 6 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:130,512,428...130,543,637
Ensembl chr 7:130,527,316...130,543,633
JBrowse link
G Tmem39a transmembrane protein 39a involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:62,160,631...62,189,964
Ensembl chr11:62,160,631...62,189,964
JBrowse link
G Tollip toll interacting protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:196,961,585...196,984,252
Ensembl chr 1:196,950,771...196,983,625
JBrowse link
G Tp53 tumor protein p53 involved_in ISO (PMID:23629966) RGD PMID:23629966 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Trappc4 trafficking protein particle complex subunit 4 involved_in ISO
IEA
ISS
(PMID:31794024)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:31794024 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:44,729,458...44,733,285
Ensembl chr 8:44,725,331...44,733,491
JBrowse link
G Trim17 tripartite motif-containing 17 involved_in ISO (PMID:25127057) RGD PMID:25127057 NCBI chr10:43,743,111...43,750,929
Ensembl chr10:43,740,604...43,750,919
JBrowse link
G Trim5 tripartite motif-containing 5 involved_in ISO (PMID:25127057) RGD PMID:25127057 NCBI chr 1:158,720,407...158,737,393
Ensembl chr 1:158,720,410...158,814,012
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO (MGI:3796758|PMID:18443221), (MGI:5285135|PMID:21258367)
UniProtKB:Q8IYT8 (PMID:17595159), (PMID:18936157), (PMID:28389568)
RGD PMID:17595159 PMID:18443221 PMID:18936157 PMID:21258367 PMID:28389568 MGI:3796758 MGI:5285135 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in ISO (MGI:3796758|PMID:18443221)
UniProtKB:O75385 (PMID:18936157), (PMID:28389568)
RGD PMID:18443221 PMID:18936157 PMID:28389568 MGI:3796758 NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,454,030...46,530,407
JBrowse link
G Umod uromodulin acts_upstream_of_or_within ISO (MGI:6107740|PMID:28990932) RGD PMID:28990932 MGI:6107740 NCBI chr 1:173,816,341...173,829,681
Ensembl chr 1:173,816,339...173,830,302
JBrowse link
G Usp10 ubiquitin specific peptidase 10 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:47,972,858...48,014,900
Ensembl chr19:47,972,611...48,014,897
JBrowse link
G Uvrag UV radiation resistance associated involved_in ISO (PMID:24056303) RGD PMID:24056303 NCBI chr 1:153,185,356...153,442,200
Ensembl chr 1:153,185,395...153,442,136
JBrowse link
G Vcp valosin-containing protein involved_in ISO
ISS
(PMID:20104022), (PMID:25125609)
GO_REF:0000024
RGD
UniProt
PMID:20104022 PMID:25125609 GO_REF:0000024 NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571
JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO
IBA
IDA
(PMID:28890335)
PMID:21873635
(MGI:3768504|PMID:17940279)
RGD PMID:17940279 PMID:28890335 PMID:21873635 PMID:17940279 MGI:3768504, RGD:13792537, RGD:8554414 NCBI chr10:71,405,058...71,505,045
Ensembl chr10:71,405,452...71,505,007
JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:44,683,768...44,698,572
Ensembl chr 8:44,684,127...44,698,568
JBrowse link
G Vps13a vacuolar protein sorting 13 homolog A acts_upstream_of_or_within ISO (PMID:25996471) RGD PMID:25996471 NCBI chr 1:213,901,999...214,128,638
Ensembl chr 1:213,901,999...214,128,555
JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in ISO
IBA
(PMID:24554770)
PMID:21873635
RGD PMID:24554770 PMID:21873635 RGD:13792537 NCBI chr 3:107,266,846...107,304,884
Ensembl chr 3:107,267,310...107,304,975
JBrowse link
G Vps51 VPS51 subunit of GARP complex involved_in IEA
ISO
GO_REF:0000107
(PMID:20685960)
Ensembl
RGD
PMID:20685960 GO_REF:0000107 NCBI chr 1:203,360,434...203,370,295
Ensembl chr 1:203,360,440...203,370,430
JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A involved_in ISO (PMID:24095276) RGD PMID:24095276 NCBI chr 1:254,356,343...254,661,854
Ensembl chr 1:254,356,429...254,661,852
JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISS
ISO
GO_REF:0000024
(PMID:23435086)
UniProt
RGD
PMID:23435086 GO_REF:0000024 NCBI chr  X:14,776,280...14,782,197
Ensembl chr  X:14,776,293...14,782,202
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:15602573), (PMID:17618624) RGD PMID:15602573 PMID:17618624 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846
JBrowse link
aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acbd5 acyl-CoA binding domain containing 5 NOT|involved_in ISO (PMID:24535825) RGD PMID:24535825 NCBI chr17:85,206,178...85,248,909
Ensembl chr17:85,206,303...85,248,215
JBrowse link
G Atg5 autophagy related 5 involved_in IEA
ISO
GO_REF:0000107
(MGI:5751672|PMID:22982048)
(PMID:22982048)
Ensembl
RGD
PMID:22982048 GO_REF:0000107 MGI:5751672 NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Sqstm1 sequestosome 1 involved_in ISO
IBA
ISS
UniProtKB:Q562E7 (PMID:28404643)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:28404643 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:34,525,517...34,536,685
Ensembl chr10:34,525,519...34,536,673
JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:21143716)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21143716 GO_REF:0000024 GO_REF:0000107 NCBI chr17:6,439,002...6,477,096
Ensembl chr17:6,439,002...6,477,090
JBrowse link
G Wdfy3 WD repeat and FYVE domain containing 3 involved_in ISO (PMID:20168092), (PMID:20417604) RGD PMID:20168092 PMID:20417604 NCBI chr14:7,578,245...7,810,491
Ensembl chr14:7,606,628...7,810,482
JBrowse link
G Wdr81 WD repeat domain 81 involved_in ISS
ISO
GO_REF:0000024
(PMID:28404643)
UniProt
RGD
PMID:28404643 GO_REF:0000024 NCBI chr10:60,281,969...60,295,374
Ensembl chr10:60,281,972...60,295,296
JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001519.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07048308.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO (PMID:20921139), (PMID:25215947) RGD PMID:20921139 PMID:25215947 NCBI chr 3:77,700,936...77,890,221
Ensembl chr 3:77,700,936...77,890,221
JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in ISO
ISS
(PMID:29180427)
GO_REF:0000024
RGD
UniProt
PMID:29180427 GO_REF:0000024 NCBI chr12:17,049,766...17,055,954
Ensembl chr12:17,049,777...17,058,026
JBrowse link
G Arsg arylsulfatase G involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:94,412,261...94,551,224
Ensembl chr10:94,447,399...94,542,941
JBrowse link
G Atg101 autophagy related 101 involved_in IBA
ISO
PMID:21873635
(MGI:6810791|PMID:19225151)
(PMID:19225151), (PMID:19597335)
RGD PMID:19225151 PMID:19597335 PMID:21873635 MGI:6810791, RGD:13792537 NCBI chr 7:132,398,477...132,407,643
Ensembl chr 7:132,398,483...132,407,633
JBrowse link
G Atg12 autophagy related 12 involved_in IBA
ISO
PMID:21873635
(MGI:2137756|PMID:11266458)
RGD PMID:11266458 PMID:21873635 MGI:2137756, RGD:13792537 NCBI chr18:39,452,247...39,462,424
Ensembl chr18:39,452,191...39,462,418
JBrowse link
G Atg13 autophagy related 13 acts_upstream_of_or_within
involved_in
ISO (PMID:19211835)
(MGI:3849242|PMID:19258318), (MGI:6810791|PMID:19225151)
(PMID:19211835), (PMID:19225151)
RGD PMID:19211835 PMID:19225151 PMID:19258318 MGI:3849242 MGI:6810791 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043
JBrowse link
G Atg14 autophagy related 14 involved_in IBA
ISO
PMID:21873635
(PMID:19270696)
RGD PMID:19270696 PMID:21873635 RGD:13792537 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Atg16l1 autophagy related 16-like 1 involved_in IBA
ISO
PMID:21873635
(MGI:2137756|PMID:11266458)
RGD PMID:11266458 PMID:21873635 MGI:2137756, RGD:13792537 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529
JBrowse link
G Atg16l2 autophagy related 16-like 2 involved_in
NOT|involved_in
IBA
ISO
PMID:21873635
(MGI:2137756|PMID:11266458)
(MGI:6436405|PMID:22082872)
RGD PMID:11266458 PMID:22082872 PMID:21873635 MGI:2137756 MGI:6436405, RGD:13792537 NCBI chr 1:155,687,386...155,703,419
Ensembl chr 1:155,684,564...155,703,420
JBrowse link
G Atg2a autophagy related 2A involved_in ISO
IBA
(PMID:28561066)
PMID:21873635
RGD PMID:28561066 PMID:21873635 RGD:13792537 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
JBrowse link
G Atg2b autophagy related 2B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:124,522,283...124,592,412
Ensembl chr 6:124,525,523...124,592,015
JBrowse link
G Atg3 autophagy related 3 involved_in
acts_upstream_of_or_within
IBA
ISO
ISS
PMID:21873635
(MGI:4835103|PMID:20723759)
(MGI:4880808|PMID:21220506)
GO_REF:0000024
RGD
UniProt
PMID:20723759 PMID:21220506 PMID:21873635 GO_REF:0000024 MGI:4835103 MGI:4880808, RGD:13792537 NCBI chr11:55,624,928...55,653,212
Ensembl chr11:55,624,917...55,653,224
JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO (MGI:5630037|PMID:25578879) RGD PMID:25578879 MGI:5630037 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103
JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within
IMP
ISO
IBA
(MGI:2137756|PMID:11266458)
(MGI:5500861|PMID:23704209)
PMID:21873635
RGD PMID:11266458 PMID:23704209 PMID:16420522 PMID:21873635 MGI:2137756 MGI:5500861, RGD:1643189, RGD:13792537 NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5500861|PMID:23704209)
(MGI:4420830|PMID:20080761)
RGD PMID:20080761 PMID:23704209 PMID:21873635 MGI:4420830 MGI:5500861, RGD:13792537 NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Atg9a autophagy related 9A acts_upstream_of_or_within
involved_in
ISO
ISS
MGI:4417824 (MGI:5494547|PMID:22456507), (MGI:5509287|PMID:23402761)
GO_REF:0000024
(PMID:29180427), (PMID:29437695), (PMID:32513819), (PMID:33468622)
(PMID:15755735), (PMID:22456507)
RGD
UniProt
PMID:15755735 PMID:22456507 PMID:23402761 PMID:29180427 PMID:29437695 More... GO_REF:0000024 MGI:5494547 MGI:5509287 NCBI chr 9:76,677,403...76,688,035
Ensembl chr 9:76,677,404...76,687,986
JBrowse link
G Atg9b autophagy related 9B acts_upstream_of_or_within ISO (PMID:15755735) RGD PMID:15755735 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651
JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:28890335)
UniProt
RGD
PMID:28890335 GO_REF:0000024 NCBI chr12:34,072,710...34,122,142
Ensembl chr12:34,072,683...34,122,101
JBrowse link
G Bag3 BAG cochaperone 3 involved_in IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr 1:183,103,038...183,126,862
Ensembl chr 1:183,102,871...183,126,858
JBrowse link
G Becn1 beclin 1 involved_in IMP
ISO
ISS
IBA
(MGI:5619439|PMID:23332761)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:23332761 PMID:16420522 PMID:21873635 GO_REF:0000024 MGI:5619439, RGD:1643189, RGD:13792537 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Becn2 beclin 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:87,843,528...87,892,343
Ensembl chr13:87,844,531...87,845,787
JBrowse link
G Ctsd cathepsin D acts_upstream_of_or_within ISO (MGI:3057045|PMID:15452145) RGD PMID:15452145 MGI:3057045 NCBI chr 1:197,527,467...197,539,343
Ensembl chr 1:197,527,467...197,539,488
JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IBA
ISO
PMID:21873635
(PMID:21072319)
RGD PMID:21072319 PMID:21873635 RGD:13792537 NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:196,091,646...196,168,716
JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in ISO
IBA
(PMID:23182941)
PMID:21873635
RGD PMID:23182941 PMID:21873635 RGD:13792537 NCBI chr10:57,794,072...57,795,671
Ensembl chr10:57,793,685...57,796,217
JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO MGI:2182627 (MGI:5913112|PMID:24430976) RGD PMID:24430976 MGI:5913112 NCBI chr 1:5,727,111...5,845,338
Ensembl chr 1:5,727,066...5,920,555
JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:54,714,834...54,717,769
Ensembl chr10:54,714,198...54,717,765
JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:162,980,309...162,989,452
Ensembl chr 4:162,980,249...162,989,450
JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:39,910,572...39,921,408
Ensembl chr19:39,910,534...39,924,628
JBrowse link
G Irgm immunity-related GTPase M involved_in ISO (PMID:16888103)
(MGI:3656111|PMID:16888103)
RGD PMID:16888103 MGI:3656111 NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578
JBrowse link
G LOC100359937 GABA(A) receptor-associated protein-like 2-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:89,246,175...89,247,132
Ensembl chr 8:89,246,195...89,247,139
JBrowse link
G LOC120098596 gamma-aminobutyric acid receptor-associated protein-like 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:55,052,756...55,053,109
Ensembl chr19:55,052,756...55,053,109
JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO
IDA
IBA
(PMID:24290141)
PMID:11060023
PMID:21873635
RGD PMID:24290141 PMID:11060023 PMID:21873635 RGD:8554284, RGD:13792537 NCBI chr 3:143,783,024...143,784,670
Ensembl chr 3:143,783,024...143,784,670
JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:49,665,795...49,673,655
Ensembl chr19:49,665,791...49,677,690
JBrowse link
G Map1lc3b2 microtubule-associated protein 1 light chain 3 beta 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:70,993,893...70,994,586
Ensembl chr16:70,994,128...70,994,606
JBrowse link
G Nsfl1c NSFL1 cofactor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:139,978,306...140,002,876
Ensembl chr 3:139,978,301...140,002,870
JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 6:132,096,992...132,156,702
Ensembl chr 6:132,096,901...132,154,583
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 acts_upstream_of_or_within
involved_in
IMP
ISO
IBA
(MGI:5565574|PMID:24098492)
PMID:21873635
RGD PMID:24098492 PMID:12453151 PMID:21873635 MGI:5565574, RGD:2303129, RGD:13792537 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:48,688,651...49,882,520
Ensembl chr 1:48,690,556...49,882,555
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO MGI:2149116 (MGI:3057045|PMID:15452145) RGD PMID:15452145 MGI:3057045 NCBI chr 6:103,323,014...103,375,088
Ensembl chr 6:103,323,120...103,371,650
JBrowse link
G Rab19 RAB19, member RAS oncogene family involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:68,157,159...68,166,889
Ensembl chr 4:68,156,881...68,166,886
JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO
IBA
ISS
(PMID:22939626)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:22939626 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr14:94,422,219...94,448,799
Ensembl chr14:94,415,275...94,448,248
JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:202,405,759...202,413,868
JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO
IBA
(PMID:22452336)
PMID:21873635
RGD PMID:22452336 PMID:21873635 RGD:13792537 NCBI chr 9:35,943,522...35,967,367
Ensembl chr 9:35,944,085...35,966,927
JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in ISO (MGI:5447922|PMID:18448665) RGD PMID:18448665 MGI:5447922 NCBI chr 2:135,528,116...135,538,719
Ensembl chr 2:135,528,116...135,538,719
JBrowse link
G Rab43 RAB43, member RAS oncogene family involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,249,878...120,269,174
Ensembl chr 4:120,249,879...120,269,174
JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:19956673) RGD PMID:19956673 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA
ISO
PMID:21873635
(MGI:3849242|PMID:19258318), (MGI:6810791|PMID:19225151)
(PMID:19225151), (PMID:28890335)
RGD PMID:19225151 PMID:19258318 PMID:28890335 PMID:21873635 MGI:3849242 MGI:6810791, RGD:13792537 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in IBA
ISO
PMID:21873635
(PMID:26416964)
RGD PMID:26416964 PMID:21873635 RGD:13792537 NCBI chr 9:75,702,937...75,727,719
Ensembl chr 9:75,703,750...75,723,525
JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISO
IBA
ISS
(PMID:30568238), (PMID:30842662)
(MGI:6305034|PMID:30568238)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:30568238 PMID:30842662 PMID:21873635 GO_REF:0000024 MGI:6305034, RGD:13792537 NCBI chr18:27,332,119...27,338,371
Ensembl chr18:27,332,119...27,338,335
JBrowse link
G Stx12 syntaxin 12 involved_in ISO (PMID:24095276) RGD PMID:24095276 NCBI chr 5:145,062,978...145,092,423
Ensembl chr 5:145,063,587...145,092,377
JBrowse link
G Synpo2 synaptopodin 2 involved_in IMP PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chr 2:211,217,099...211,371,267
Ensembl chr 2:211,216,783...211,371,267
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO (MGI:6296816|PMID:23908015) RGD PMID:23908015 MGI:6296816 NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:201,127,034...201,138,742
JBrowse link
G Tmem41b transmembrane protein 41B involved_in ISS
ISO
GO_REF:0000024
(PMID:30093494), (PMID:30126924), (PMID:30933966)
UniProt
RGD
PMID:30093494 PMID:30126924 PMID:30933966 GO_REF:0000024 NCBI chr 1:164,012,585...164,026,967
Ensembl chr 1:164,012,592...164,026,933
JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:24,253,986...24,272,250
Ensembl chr 5:24,260,568...24,267,968
JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in ISO
IEA
ISS
IBA
(PMID:19056683)
GO_REF:0000107
GO_REF:0000024
PMID:21873635
RGD
Ensembl
UniProt
PMID:19056683 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 3:143,881,427...143,890,104
Ensembl chr 3:143,882,021...143,890,097
JBrowse link
G Ubqln1 ubiquilin 1 involved_in IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:20529957)
Ensembl
RGD
PMID:20529957 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr17:6,439,002...6,477,096
Ensembl chr17:6,439,002...6,477,090
JBrowse link
G Ubqln2 ubiquilin 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:17,853,086...17,856,505
Ensembl chr  X:17,853,114...17,856,505
JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:27,884,253...27,912,709
Ensembl chr 6:27,884,680...27,912,649
JBrowse link
G Ubxn2b UBX domain protein 2B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:19,303,634...19,333,181
Ensembl chr 5:19,303,682...19,326,849
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IBA
ISO
PMID:21873635
(MGI:3849242|PMID:19258318), (MGI:6810791|PMID:19225151)
(PMID:19225151), (PMID:28890335)
RGD PMID:19225151 PMID:19258318 PMID:28890335 PMID:21873635 MGI:3849242 MGI:6810791, RGD:13792537 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,454,030...46,530,407
JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO
ISS
(PMID:28890335), (PMID:30093494), (PMID:30933966)
GO_REF:0000024
RGD
UniProt
PMID:28890335 PMID:30093494 PMID:30933966 GO_REF:0000024 NCBI chr10:71,405,058...71,505,045
Ensembl chr10:71,405,452...71,505,007
JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
IEA
ISS
(PMID:28561066)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:28561066 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:14,776,280...14,782,197
Ensembl chr  X:14,776,293...14,782,202
JBrowse link
G Wdr45b WD repeat domain 45B involved_in ISO (PMID:28561066) RGD PMID:28561066 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:28561066) RGD PMID:28561066 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:20505359), (PMID:28561066), (PMID:28890335)
UniProt
RGD
PMID:20505359 PMID:28561066 PMID:28890335 GO_REF:0000024 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794
JBrowse link
autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 involved_in ISO (PMID:10625637) RGD PMID:10625637 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Becn1 beclin 1 involved_in ISO
IEA
(PMID:10625637)
GO_REF:0000107
RGD
Ensembl
PMID:10625637 GO_REF:0000107 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Chmp1a charged multivesicular body protein 1A involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr19:51,238,153...51,246,433
Ensembl chr19:51,238,160...51,246,436
JBrowse link
G Chmp1b charged multivesicular body protein 1B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr18:60,740,349...60,742,879 JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 1:73,660,045...73,662,894
Ensembl chr 1:73,660,046...73,662,452
JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr11:3,338,007...3,364,357
Ensembl chr11:3,337,494...3,385,181
JBrowse link
G Chmp3 charged multivesicular body protein 3 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 4:103,576,453...103,622,566
Ensembl chr 4:103,576,515...103,623,959
JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 3:143,170,822...143,211,376
Ensembl chr 3:143,170,902...143,210,844
JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in ISO
IEA
(PMID:17984323)
GO_REF:0000107
RGD
Ensembl
PMID:17984323 GO_REF:0000107 NCBI chr 2:91,391,729...91,428,652
Ensembl chr 2:91,388,530...91,428,668
JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in ISO
IEA
(PMID:17984323)
GO_REF:0000107
RGD
Ensembl
PMID:17984323 GO_REF:0000107 NCBI chr 5:56,081,385...56,098,529
Ensembl chr 5:56,081,343...56,098,529
JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr10:105,191,972...105,197,642
Ensembl chr10:105,191,950...105,197,640
JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in ISO
IEA
(PMID:17984323)
GO_REF:0000107
RGD
Ensembl
PMID:17984323 GO_REF:0000107 NCBI chr15:44,790,983...44,806,216
Ensembl chr15:44,790,996...44,806,216
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin acts_upstream_of_or_within ISO MGI:2388888 (MGI:3690270|PMID:16714284) RGD PMID:16714284 MGI:3690270 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
JBrowse link
G Epg5 ectopic P-granules autophagy protein 5 homolog involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:5505596 (MGI:5488852|PMID:23479740)
RGD PMID:23479740 PMID:21873635 MGI:5488852, RGD:13792537 NCBI chr18:71,403,990...71,502,079
Ensembl chr18:71,404,010...71,501,502
JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 involved_in ISS
ISO
IBA
GO_REF:0000024
(MGI:5805578|PMID:27628032)
PMID:21873635
UniProt
RGD
PMID:27628032 PMID:21873635 GO_REF:0000024 MGI:5805578, RGD:13792537 NCBI chr  X:117,173,097...117,222,090
Ensembl chr  X:117,057,606...117,260,522
JBrowse link
G Lix1 limb and CNS expressed 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:58,128,961...58,187,554
Ensembl chr 1:58,128,961...58,185,964
JBrowse link
G Lix1l limb and CNS expressed 1 like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:184,136,018...184,161,918
Ensembl chr 2:184,136,038...184,161,916
JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO
IBA
(PMID:28223137)
PMID:21873635
RGD PMID:28223137 PMID:21873635 RGD:13792537 NCBI chr 3:143,783,024...143,784,670
Ensembl chr 3:143,783,024...143,784,670
JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO
IBA
(PMID:28223137)
PMID:21873635
RGD PMID:28223137 PMID:21873635 RGD:13792537 NCBI chr19:49,665,795...49,673,655
Ensembl chr19:49,665,791...49,677,690
JBrowse link
G Map1lc3b2 microtubule-associated protein 1 light chain 3 beta 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:70,993,893...70,994,586
Ensembl chr16:70,994,128...70,994,606
JBrowse link
G Mcoln1 mucolipin TRP cation channel 1 acts_upstream_of_or_within ISO MGI:3794204 (MGI:4839416|PMID:20600908) RGD PMID:20600908 MGI:4839416 NCBI chr12:1,560,341...1,574,252
Ensembl chr12:1,560,359...1,574,252
JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within ISO (MGI:6155546|PMID:29514215) RGD PMID:29514215 MGI:6155546 NCBI chr 2:123,822,042...123,882,913
Ensembl chr 2:123,816,614...123,857,971
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in ISO
IEA
(PMID:10625637)
GO_REF:0000107
RGD
Ensembl
PMID:10625637 GO_REF:0000107 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048
JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 involved_in ISO
IEA
(PMID:10625637)
GO_REF:0000107
RGD
Ensembl
PMID:10625637 GO_REF:0000107 NCBI chr 8:106,267,908...106,316,585
Ensembl chr 8:106,267,954...106,316,584
JBrowse link
G Rubcnl rubicon like autophagy enhancer involved_in ISO
IBA
(PMID:28306502), (PMID:30704899)
(MGI:6282647|PMID:30704899)
PMID:21873635
RGD PMID:28306502 PMID:30704899 PMID:21873635 MGI:6282647, RGD:13792537 NCBI chr15:50,332,458...50,377,494
Ensembl chr15:50,332,418...50,400,849
JBrowse link
G Snap29 synaptosome associated protein 29 involved_in ISS
ISO
GO_REF:0000024
(PMID:23217709)
UniProt
RGD
PMID:23217709 GO_REF:0000024 NCBI chr11:83,578,479...83,608,953
Ensembl chr11:83,578,489...83,608,958
JBrowse link
G Snapin SNAP-associated protein acts_upstream_of_or_within ISO MGI:3608768 (MGI:4879078|PMID:20920792), (MGI:5504339|PMID:22797916) RGD PMID:20920792 PMID:22797916 MGI:4879078 MGI:5504339 NCBI chr 2:175,971,575...175,974,164
Ensembl chr 2:175,971,257...175,974,231
JBrowse link
G Snx14 sorting nexin 14 involved_in ISO
IBA
(PMID:25848753)
PMID:21873635
RGD PMID:25848753 PMID:21873635 RGD:13792537 NCBI chr 8:89,283,673...89,390,597
Ensembl chr 8:89,298,114...89,390,580
JBrowse link
G Stx17 syntaxin 17 involved_in ISS
ISO
GO_REF:0000024
(PMID:23217709), (PMID:24554770), (PMID:28306502)
UniProt
RGD
PMID:23217709 PMID:24554770 PMID:28306502 GO_REF:0000024 NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:62,446,187...62,504,451
JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:22342342)
UniProt
RGD
PMID:22342342 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr12:10,391,587...10,420,462
Ensembl chr12:10,391,696...10,419,611
JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:23459205)
Ensembl
RGD
PMID:23459205 GO_REF:0000107 NCBI chr17:6,439,002...6,477,096
Ensembl chr17:6,439,002...6,477,090
JBrowse link
G Uvrag UV radiation resistance associated involved_in ISO (PMID:28306502) RGD PMID:28306502 NCBI chr 1:153,185,356...153,442,200
Ensembl chr 1:153,185,395...153,442,136
JBrowse link
G Vamp7 vesicle-associated membrane protein 7 NOT|involved_in ISO (PMID:23217709) RGD PMID:23217709 NCBI chr12:16,728,477...16,764,261
Ensembl chr12:16,728,524...16,764,097
JBrowse link
G Vamp8 vesicle-associated membrane protein 8 involved_in ISO
ISS
(PMID:23217709)
GO_REF:0000024
RGD
UniProt
PMID:23217709 GO_REF:0000024 NCBI chr 4:104,442,383...104,452,884
Ensembl chr 4:104,442,393...104,452,897
JBrowse link
G Vcp valosin-containing protein involved_in ISO
IBA
ISS
(PMID:20104022)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20104022 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571
JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog NOT|involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 6:106,888,284...106,913,139
Ensembl chr 6:106,888,284...106,913,117
JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 3:117,622,534...117,644,041
Ensembl chr 3:117,622,542...117,646,441
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in ISO (PMID:24554770), (PMID:25783203) RGD PMID:24554770 PMID:25783203 NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated NOT|involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 1:134,223,967...134,247,232
Ensembl chr 1:134,223,949...134,246,970
JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B NOT|involved_in ISO (PMID:23217709) RGD PMID:23217709 NCBI chr 6:97,957,700...97,976,491
Ensembl chr 6:97,961,346...97,976,465
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 NOT|involved_in ISO (PMID:20505359) RGD PMID:20505359 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794
JBrowse link
autophagosome membrane docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 involved_in ISO (PMID:25686604) RGD PMID:25686604 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISO
ISS
(PMID:28890335)
GO_REF:0000024
RGD
UniProt
PMID:28890335 GO_REF:0000024 NCBI chr12:34,072,710...34,122,142
Ensembl chr12:34,072,683...34,122,101
JBrowse link
G Calm1 calmodulin 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:28890335)
UniProt
RGD
PMID:28890335 GO_REF:0000024 NCBI chr 6:119,487,691...119,495,759
Ensembl chr 6:119,487,621...119,498,227
JBrowse link
G Calm2 calmodulin 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:28890335)
UniProt
RGD
PMID:28890335 GO_REF:0000024 NCBI chr 6:7,091,624...7,104,284
Ensembl chr 6:7,091,567...7,104,287
JBrowse link
G Calm3 calmodulin 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:28890335)
UniProt
RGD
PMID:28890335 GO_REF:0000024 NCBI chr 1:77,590,668...77,597,776
Ensembl chr 1:77,589,230...77,592,207
JBrowse link
G Snap29 synaptosome associated protein 29 involved_in ISO
IEA
(PMID:25686604)
GO_REF:0000107
RGD
Ensembl
PMID:25686604 GO_REF:0000107 NCBI chr11:83,578,479...83,608,953
Ensembl chr11:83,578,489...83,608,958
JBrowse link
G Stx17 syntaxin 17 involved_in ISO (PMID:25686604) RGD PMID:25686604 NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:62,446,187...62,504,451
JBrowse link
G Vamp8 vesicle-associated membrane protein 8 involved_in ISO
IEA
(PMID:25686604)
GO_REF:0000107
RGD
Ensembl
PMID:25686604 GO_REF:0000107 NCBI chr 4:104,442,383...104,452,884
Ensembl chr 4:104,442,393...104,452,897
JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:28890335)
UniProt
RGD
PMID:28890335 GO_REF:0000024 NCBI chr10:71,405,058...71,505,045
Ensembl chr10:71,405,452...71,505,007
JBrowse link
autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:22186024) RGD PMID:22186024 NCBI chr 5:153,292,722...153,312,143
Ensembl chr 5:153,292,751...153,312,139
JBrowse link
G Gba glucosylceramidase beta involved_in ISO (MGI:5501380|PMID:23707074) RGD PMID:23707074 MGI:5501380 NCBI chr 2:174,609,437...174,615,457
Ensembl chr 2:174,609,403...174,618,263
JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha acts_upstream_of_or_within ISO MGI:2685045 (MGI:5565574|PMID:24098492) RGD PMID:24098492 MGI:5565574 NCBI chr 1:170,577,942...170,684,353
Ensembl chr 1:170,577,942...170,683,472
JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta acts_upstream_of_or_within ISO MGI:1203729 (MGI:5565574|PMID:24098492) RGD PMID:24098492 MGI:5565574 NCBI chr13:44,494,673...44,555,663
Ensembl chr13:44,495,050...44,555,612
JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:57,992,396...58,000,220
Ensembl chr 8:57,992,723...57,999,467
JBrowse link
autophagosome-endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rubcnl rubicon like autophagy enhancer involved_in ISO
IBA
(PMID:28306502)
PMID:21873635
RGD PMID:28306502 PMID:21873635 RGD:13792537 NCBI chr15:50,332,458...50,377,494
Ensembl chr15:50,332,418...50,400,849
JBrowse link
autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ADP-ribosylation factor like GTPase 8B involved_in ISO
ISS
(PMID:28325809)
GO_REF:0000024
RGD
UniProt
PMID:28325809 GO_REF:0000024 NCBI chr 4:141,748,634...141,792,605
Ensembl chr 4:141,748,587...141,792,596
JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:30538141)
(MGI:6273736|PMID:30538141)
RGD PMID:30538141 MGI:6273736 NCBI chr 5:153,292,722...153,312,143
Ensembl chr 5:153,292,751...153,312,139
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (MGI:5698740|PMID:26450516) RGD PMID:26450516 MGI:5698740 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:6159303|PMID:29727621)
UniProt
Ensembl
RGD
PMID:29727621 GO_REF:0000024 GO_REF:0000107 MGI:6159303 NCBI chr17:81,496,669...81,668,180
Ensembl chr17:81,496,670...81,668,029
JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISS
ISO
GO_REF:0000024
(MGI:6159303|PMID:29727621)
UniProt
RGD
PMID:29727621 GO_REF:0000024 MGI:6159303 NCBI chr10:82,706,016...82,734,938
Ensembl chr10:82,701,098...82,734,938
JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 involved_in ISO
ISS
(PMID:28325809)
GO_REF:0000024
RGD
UniProt
PMID:28325809 GO_REF:0000024 NCBI chr10:88,313,837...88,366,182
Ensembl chr10:88,314,651...88,362,412
JBrowse link
G Rubcnl rubicon like autophagy enhancer involved_in ISO
IBA
(PMID:28306502)
PMID:21873635
RGD PMID:28306502 PMID:21873635 RGD:13792537 NCBI chr15:50,332,458...50,377,494
Ensembl chr15:50,332,418...50,400,849
JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in ISO (PMID:33422265) RGD PMID:33422265 NCBI chr 3:107,266,846...107,304,884
Ensembl chr 3:107,267,310...107,304,975
JBrowse link
autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07048308.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO UniProtKB:O60260|UniProtKB:Q99MQ3 (PMID:25215947) RGD PMID:25215947 NCBI chr 3:77,700,936...77,890,221
Ensembl chr 3:77,700,936...77,890,221
JBrowse link
G Atg12 autophagy related 12 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:39,452,247...39,462,424
Ensembl chr18:39,452,191...39,462,418
JBrowse link
G Atg2a autophagy related 2A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
JBrowse link
G Atg2b autophagy related 2B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:124,522,283...124,592,412
Ensembl chr 6:124,525,523...124,592,015
JBrowse link
G Atg3 autophagy related 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:55,624,928...55,653,212
Ensembl chr11:55,624,917...55,653,224
JBrowse link
G Atg5 autophagy related 5 involved_in IEA
ISO
IBA
GO_REF:0000107
(MGI:3796473|PMID:18281291)
PMID:21873635
Ensembl
RGD
PMID:18281291 PMID:21873635 GO_REF:0000107 MGI:3796473, RGD:13792537 NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within
ISO
IBA
UniProtKB:Q9BXM7 (PMID:19279012)
(MGI:4420830|PMID:20080761)
(MGI:5529208|PMID:23981124)
PMID:21873635
RGD PMID:19279012 PMID:20080761 PMID:23981124 PMID:21873635 MGI:4420830 MGI:5529208, RGD:13792537 NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Atg9a autophagy related 9A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:76,677,403...76,688,035
Ensembl chr 9:76,677,404...76,687,986
JBrowse link
G Atg9b autophagy related 9B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651
JBrowse link
G Becn1 beclin 1 involved_in ISO (PMID:25215947)
(MGI:3796473|PMID:18281291)
RGD PMID:18281291 PMID:25215947 MGI:3796473 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Capn10 calpain 10 IMP RGD PMID:22568896 RGD:7247732 NCBI chr 9:93,498,132...93,510,494
Ensembl chr 9:93,498,478...93,510,494
JBrowse link
G Cdkn2a cyclin-dependent kinase inhibitor 2A involved_in ISO (PMID:25217637) RGD PMID:25217637 NCBI chr 5:103,984,949...103,992,143
Ensembl chr 5:103,984,949...104,003,149
JBrowse link
G Cisd2 CDGSH iron sulfur domain 2 involved_in IBA
ISO
PMID:21873635
(MGI:3845412|PMID:19451219)
RGD PMID:19451219 PMID:21873635 MGI:3845412, RGD:13792537 NCBI chr 2:223,828,937...223,853,768
Ensembl chr 2:223,828,937...223,868,946
JBrowse link
G Ctsk cathepsin K involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr 2:183,058,586...183,069,551
Ensembl chr 2:183,058,569...183,069,550
JBrowse link
G Fbxl4 F-box and leucine-rich repeat protein 4 acts_upstream_of_or_within ISO MGI:6514034 (MGI:6511561|PMID:32525278) RGD PMID:32525278 MGI:6511561 NCBI chr 5:35,955,801...36,029,446
Ensembl chr 5:35,955,812...36,029,443
JBrowse link
G Fbxo7 F-box protein 7 involved_in ISO
ISS
(PMID:23933751)
GO_REF:0000024
RGD
UniProt
PMID:23933751 GO_REF:0000024 NCBI chr 7:17,809,224...17,837,549
Ensembl chr 7:17,809,231...17,837,530
JBrowse link
G Fis1 fission, mitochondrial 1 involved_in ISO
IBA
(PMID:18515060)
PMID:21873635
RGD PMID:18515060 PMID:21873635 RGD:13792537 NCBI chr12:19,708,558...19,723,392
Ensembl chr12:19,708,558...19,723,377
JBrowse link
G Fundc1 FUN14 domain containing 1 involved_in
acts_upstream_of_or_within
ISO
IBA
ISS
(PMID:22267086)
UniProtKB:Q9H492 (PMID:22267086)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:22267086 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr  X:5,083,635...5,100,293
Ensembl chr  X:5,083,617...5,100,284
JBrowse link
G Fundc2 FUN14 domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:128,473...138,232
Ensembl chr18:132,248...138,345
JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:54,714,834...54,717,769
Ensembl chr10:54,714,198...54,717,765
JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:162,980,309...162,989,452
Ensembl chr 4:162,980,249...162,989,450
JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:39,910,572...39,921,408
Ensembl chr19:39,910,534...39,924,628
JBrowse link
G LOC100359937 GABA(A) receptor-associated protein-like 2-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:89,246,175...89,247,132
Ensembl chr 8:89,246,195...89,247,139
JBrowse link
G LOC120098596 gamma-aminobutyric acid receptor-associated protein-like 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:55,052,756...55,053,109
Ensembl chr19:55,052,756...55,053,109
JBrowse link
G LOC365778 similar to RIKEN cDNA 1700034I23 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:123,877,836...123,880,083
Ensembl chr 2:123,877,709...123,880,126
JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
UniProtKB:Q8IVP5 (PMID:22267086)
RGD PMID:22267086 PMID:21873635 RGD:13792537 NCBI chr 3:143,783,024...143,784,670
Ensembl chr 3:143,783,024...143,784,670
JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO
IBA
UniProtKB:Q9BXM7 (PMID:19279012)
PMID:21873635
RGD PMID:19279012 PMID:21873635 RGD:13792537 NCBI chr19:49,665,795...49,673,655
Ensembl chr19:49,665,791...49,677,690
JBrowse link
G Map1lc3b2 microtubule-associated protein 1 light chain 3 beta 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:70,993,893...70,994,586
Ensembl chr16:70,994,128...70,994,606
JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO
IBA
(PMID:20798600), (PMID:23933751), (PMID:24896179)
PMID:21873635
RGD PMID:20798600 PMID:23933751 PMID:24896179 PMID:21873635 RGD:13792537 NCBI chr 5:150,530,523...150,542,635
Ensembl chr 5:150,530,523...150,542,635
JBrowse link
G Ppargc1a PPARG coactivator 1 alpha IEP RGD PMID:19783904 RGD:10059673 NCBI chr14:58,860,752...59,516,525
Ensembl chr14:58,861,144...59,512,656
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IBA
ISS
ISO
IDA
PMID:21873635
GO_REF:0000024
(PMID:19029340), (PMID:23933751), (PMID:24896179), (PMID:25621951)
PMID:20457763
ParkinsonsUK-UCL
RGD
UniProt
PMID:19029340 PMID:23933751 PMID:24896179 PMID:25621951 PMID:21873635 More... GO_REF:0000024, RGD:13792537, RGD:10047224 NCBI chr 1:48,688,651...49,882,520
Ensembl chr 1:48,690,556...49,882,555
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Slc25a46 solute carrier family 25, member 46 acts_upstream_of_or_within ISO MGI:6358090 (MGI:5921109|PMID:28934388) RGD PMID:28934388 MGI:5921109 NCBI chr18:23,215,954...23,244,917
Ensembl chr18:23,215,962...23,244,314
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,454,030...46,530,407
JBrowse link
G Usp30 ubiquitin specific peptidase 30 involved_in ISO (PMID:24896179), (PMID:25621951) RGD PMID:24896179 PMID:25621951 NCBI chr12:42,501,345...42,555,311
Ensembl chr12:42,501,348...42,555,616
JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:14,776,280...14,782,197
Ensembl chr  X:14,776,293...14,782,202
JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794
JBrowse link
autophagy of nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:39,452,247...39,462,424
Ensembl chr18:39,452,191...39,462,418
JBrowse link
G Atg3 autophagy related 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:55,624,928...55,653,212
Ensembl chr11:55,624,917...55,653,224
JBrowse link
G Atg5 autophagy related 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:14,776,280...14,782,197
Ensembl chr  X:14,776,293...14,782,202
JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794
JBrowse link
autophagy of peroxisome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028887.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
G Acbd5 acyl-CoA binding domain containing 5 involved_in IEA
ISO
GO_REF:0000002
(PMID:24535825)
InterPro
RGD
PMID:24535825 GO_REF:0000002 NCBI chr17:85,206,178...85,248,909
Ensembl chr17:85,206,303...85,248,215
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048
JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:106,267,908...106,316,585
Ensembl chr 8:106,267,954...106,316,584
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Trappc8 trafficking protein particle complex subunit 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:12,103,874...12,180,422
Ensembl chr18:12,103,877...12,180,107
JBrowse link
chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg5 autophagy related 5 involved_in IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Atg7 autophagy related 7 involved_in IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Bag3 BAG cochaperone 3 involved_in IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr 1:183,103,038...183,126,862
Ensembl chr 1:183,102,871...183,126,858
JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 involved_in NAS PMID:18644871 ParkinsonsUK-UCL PMID:18644871 RGD:10412301 NCBI chr 6:129,702,376...129,707,907
Ensembl chr 6:129,702,383...129,707,268
JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 involved_in NAS PMID:18644871 ParkinsonsUK-UCL PMID:18644871 RGD:10412301 NCBI chr 9:15,432,986...15,438,358
Ensembl chr 9:15,433,691...15,438,488
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in
acts_upstream_of_or_within
IDA
IGI
PMID:18644871 ParkinsonsUK-UCL
MGI
PMID:18644871 PMID:18644871 RGD:10412301, RGD:10412301 NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259
JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 involved_in
acts_upstream_of_or_within
IDA
ISO
PMID:11082038
UniProtKB:P13473 (MGI:3813410|PMID:18644871), (MGI:5805578|PMID:27628032)
(MGI:3813419|PMID:18579532)
(PMID:24880125), (PMID:27628032)
(PMID:8662539)
RGD PMID:8662539 PMID:18579532 PMID:18644871 PMID:24880125 PMID:27628032 More... MGI:3813410 MGI:3813419 MGI:5805578, RGD:1581607 NCBI chr  X:117,173,097...117,222,090
Ensembl chr  X:117,057,606...117,260,522
JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr10:14,850,765...14,853,046
Ensembl chr10:14,850,765...14,853,046
JBrowse link
G Synpo2 synaptopodin 2 involved_in IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr 2:211,217,099...211,371,267
Ensembl chr 2:211,216,783...211,371,267
JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:9,635,009...9,726,520
Ensembl chr12:9,635,025...9,726,519
JBrowse link
glycophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO
ISS
(PMID:20810658)
GO_REF:0000024
RGD
GO_Central
PMID:20810658 GO_REF:0000024 NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,469,582...15,477,443
JBrowse link
late endosomal microautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07011951.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:164,044,261...164,046,336 JBrowse link
G AABR07033324.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr11:17,466,782...17,468,721 JBrowse link
G AABR07048992.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:155,934,794...155,936,910 JBrowse link
G Hsc70-ps1 heat shock cognate protein 70, pseudogene 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:164,044,226...164,046,344
Ensembl chr 2:164,044,261...164,046,336
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(MGI:5700294|PMID:21238931)
Ensembl
RGD
PMID:21238931 PMID:21873635 GO_REF:0000107 MGI:5700294, RGD:13792537 NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259
JBrowse link
G LOC680121 similar to heat shock protein 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:5,628,432...5,630,535
Ensembl chr11:5,628,427...5,630,533
JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in IEA
ISO
GO_REF:0000107
(MGI:5700294|PMID:21238931)
Ensembl
RGD
PMID:21238931 GO_REF:0000107 MGI:5700294 NCBI chr19:34,934,999...34,948,267
Ensembl chr19:34,934,961...34,948,887
JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B involved_in ISO (MGI:5700294|PMID:21238931) RGD PMID:21238931 MGI:5700294 NCBI chr13:22,907,105...22,932,200
Ensembl chr13:22,907,109...22,932,229
JBrowse link
late nucleophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
JBrowse link
G Atg2b autophagy related 2B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:124,522,283...124,592,412
Ensembl chr 6:124,525,523...124,592,015
JBrowse link
G Atg7 autophagy related 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Atg9a autophagy related 9A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:76,677,403...76,688,035
Ensembl chr 9:76,677,404...76,687,986
JBrowse link
G Atg9b autophagy related 9B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,454,030...46,530,407
JBrowse link
lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aup1 AUP1, lipid droplet regulating VLDL assembly factor involved_in ISO (PMID:29902443) RGD PMID:29902443 NCBI chr 4:115,560,274...115,563,346
Ensembl chr 4:115,560,261...115,563,346
JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISS
ISO
GO_REF:0000024
(MGI:5689086|PMID:23708524)
GO_Central
RGD
PMID:23708524 GO_REF:0000024 MGI:5689086 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889
JBrowse link
lysosomal microautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16-like 1 involved_in ISO
IEA
(PMID:29317426), (PMID:33586810)
GO_REF:0000107
(MGI:6709815|PMID:33586810)
RGD
Ensembl
PMID:29317426 PMID:33586810 GO_REF:0000107 MGI:6709815 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529
JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO (PMID:33909989) RGD PMID:33909989 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103
JBrowse link
macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07048308.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Acbd5 acyl-CoA binding domain containing 5 NOT|involved_in ISO (PMID:24535825) RGD PMID:24535825 NCBI chr17:85,206,178...85,248,909
Ensembl chr17:85,206,303...85,248,215
JBrowse link
G Atg10 autophagy related 10 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:22,109,304...22,398,313
Ensembl chr 2:22,108,426...22,398,233
JBrowse link
G Atg12 autophagy related 12 involved_in ISO (PMID:25484072)
(MGI:2137756|PMID:11266458)
RGD PMID:11266458 PMID:25484072 MGI:2137756 NCBI chr18:39,452,247...39,462,424
Ensembl chr18:39,452,191...39,462,418
JBrowse link
G Atg14 autophagy related 14 involved_in ISO (PMID:23878393) RGD PMID:23878393 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Atg16l1 autophagy related 16-like 1 involved_in ISO (PMID:29317426), (PMID:33586810)
(MGI:2137756|PMID:11266458)
RGD PMID:11266458 PMID:29317426 PMID:33586810 MGI:2137756 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529
JBrowse link
G Atg16l2 autophagy related 16-like 2 involved_in ISO (MGI:2137756|PMID:11266458) RGD PMID:11266458 MGI:2137756 NCBI chr 1:155,687,386...155,703,419
Ensembl chr 1:155,684,564...155,703,420
JBrowse link
G Atg3 autophagy related 3 acts_upstream_of_or_within ISO (MGI:5562485|PMID:24035364) RGD PMID:24035364 MGI:5562485 NCBI chr11:55,624,928...55,653,212
Ensembl chr11:55,624,917...55,653,224
JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:3612279 (MGI:4457987|PMID:20453062), (MGI:5494529|PMID:22496425), (MGI:5500861|PMID:23704209), (MGI:5562485|PMID:24035364)
GO_REF:0000117
(MGI:2137756|PMID:11266458)
(PMID:25484072)
RGD
UniProt
PMID:11266458 PMID:20453062 PMID:22496425 PMID:23704209 PMID:24035364 More... GO_REF:0000117 MGI:2137756 MGI:4457987 MGI:5494529 MGI:5500861 MGI:5562485 NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within
ISO (PMID:22354037)
MGI:1934631|MGI:3587769 (MGI:5494529|PMID:22496425), (MGI:5500861|PMID:23704209), (MGI:5562485|PMID:24035364)
RGD PMID:22354037 PMID:22496425 PMID:23704209 PMID:24035364 MGI:5494529 MGI:5500861 MGI:5562485 NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Becn1 beclin 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:5619439|PMID:23332761)
MGI:1097712|MGI:2683833 (MGI:2682527|PMID:14657337), (MGI:3723543|PMID:17468177)
UniProt
RGD
PMID:14657337 PMID:17468177 PMID:23332761 GO_REF:0000024 MGI:2682527 MGI:3723543 MGI:5619439 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin acts_upstream_of_or_within ISO MGI:2388888 (MGI:3690270|PMID:16714284) RGD PMID:16714284 MGI:3690270 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
JBrowse link
G Ei24 EI24, autophagy associated transmembrane protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:36,494,289...36,510,653
Ensembl chr 8:36,494,289...36,510,571
JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:54,714,834...54,717,769
Ensembl chr10:54,714,198...54,717,765
JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:162,980,309...162,989,452
Ensembl chr 4:162,980,249...162,989,450
JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:39,910,572...39,921,408
Ensembl chr19:39,910,534...39,924,628
JBrowse link
G Hdac10 histone deacetylase 10 involved_in ISO
ISS
(PMID:23801752)
GO_REF:0000024
RGD
UniProt
PMID:23801752 GO_REF:0000024 NCBI chr 7:120,199,126...120,205,850
Ensembl chr 7:120,199,129...120,204,228
JBrowse link
G Ilrun inflammation and lipid regulator with UBA-like and NBR1-like domains involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:5,809,931...5,876,231
Ensembl chr20:5,809,936...5,876,012
JBrowse link
G LOC100359937 GABA(A) receptor-associated protein-like 2-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:89,246,175...89,247,132
Ensembl chr 8:89,246,195...89,247,139
JBrowse link
G LOC120098596 gamma-aminobutyric acid receptor-associated protein-like 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:55,052,756...55,053,109
Ensembl chr19:55,052,756...55,053,109
JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in IBA
ISO
PMID:21873635
(PMID:28223137)
RGD PMID:28223137 PMID:21873635 RGD:13792537 NCBI chr 3:143,783,024...143,784,670
Ensembl chr 3:143,783,024...143,784,670
JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in IBA
ISO
PMID:21873635
(PMID:28223137)
RGD PMID:28223137 PMID:21873635 RGD:13792537 NCBI chr19:49,665,795...49,673,655
Ensembl chr19:49,665,791...49,677,690
JBrowse link
G Map1lc3b2 microtubule-associated protein 1 light chain 3 beta 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:70,993,893...70,994,586
Ensembl chr16:70,994,128...70,994,606
JBrowse link
G Myo5a myosin VA IMP RGD PMID:29217155 RGD:42721980 NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918
JBrowse link
G Nbr1 NBR1, autophagy cargo receptor involved_in IBA
IEA
ISS
ISO
PMID:21873635
GO_REF:0000107
GO_REF:0000002
GO_REF:0000024
(PMID:19250911)
Ensembl
InterPro
UniProt
RGD
PMID:19250911 PMID:21873635 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr10:86,477,775...86,506,418
Ensembl chr10:86,478,290...86,506,412
JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha acts_upstream_of_or_within ISO MGI:2685054 (MGI:5565574|PMID:24098492) RGD PMID:24098492 MGI:5565574 NCBI chr 1:170,577,942...170,684,353
Ensembl chr 1:170,577,942...170,683,472
JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta acts_upstream_of_or_within ISO MGI:1203729 (MGI:5565574|PMID:24098492) RGD PMID:24098492 MGI:5565574 NCBI chr13:44,494,673...44,555,663
Ensembl chr13:44,495,050...44,555,612
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:5619439|PMID:23332761), (MGI:5630037|PMID:25578879)
UniProt
RGD
PMID:23332761 PMID:25578879 GO_REF:0000024 MGI:5619439 MGI:5630037 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048
JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:106,267,908...106,316,585
Ensembl chr 8:106,267,954...106,316,584
JBrowse link
G Plaa phospholipase A2, activating protein involved_in ISS
ISO
GO_REF:0000024
(PMID:27753622)
UniProt
RGD
PMID:27753622 GO_REF:0000024 NCBI chr 5:109,428,600...109,460,373
Ensembl chr 5:109,428,265...109,460,282
JBrowse link
G Sqstm1 sequestosome 1 involved_in ISO
ISS
(PMID:20168092)
GO_REF:0000024
RGD
UniProt
PMID:20168092 GO_REF:0000024 NCBI chr10:34,525,517...34,536,685
Ensembl chr10:34,525,519...34,536,673
JBrowse link
G Tbc1d5 TBC1 domain family, member 5 involved_in ISO (PMID:24603492) RGD PMID:24603492 NCBI chr 9:3,503,328...4,017,131
Ensembl chr 9:3,513,623...4,016,913
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO MGI:1856973 (MGI:5500861|PMID:23704209) RGD PMID:23704209 MGI:5500861 NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:201,127,034...201,138,742
JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISO (PMID:25484072) RGD PMID:25484072 NCBI chr12:10,391,587...10,420,462
Ensembl chr12:10,391,696...10,419,611
JBrowse link
G Tmem74 transmembrane protein 74 involved_in ISO (PMID:18294959) RGD PMID:18294959 NCBI chr 7:74,929,286...74,937,973
Ensembl chr 7:74,931,694...74,937,934
JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 acts_upstream_of_or_within ISO MGI:1931135|MGI:5637673 (MGI:5582129|PMID:24713655) RGD PMID:24713655 MGI:5582129 NCBI chr 3:143,881,427...143,890,104
Ensembl chr 3:143,882,021...143,890,097
JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO (PMID:20529957) RGD PMID:20529957 NCBI chr17:6,439,002...6,477,096
Ensembl chr17:6,439,002...6,477,090
JBrowse link
G Ubxn6 UBX domain protein 6 involved_in ISO (PMID:27753622) RGD PMID:27753622 NCBI chr 9:900,883...906,047
Ensembl chr 9:900,884...906,124
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in
acts_upstream_of_or_within
ISO (PMID:22354037)
UniProtKB:O70405 (MGI:5607224|PMID:21855797)
(MGI:5285135|PMID:21258367)
RGD PMID:21258367 PMID:21855797 PMID:22354037 MGI:5285135 MGI:5607224 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Vcp valosin-containing protein involved_in ISS
ISO
GO_REF:0000024
(PMID:27753622)
UniProt
RGD
PMID:27753622 GO_REF:0000024 NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571
JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:46,063,124...46,227,582
Ensembl chr17:46,063,124...46,227,791
JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:254,356,343...254,661,854
Ensembl chr 1:254,356,429...254,661,852
JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:97,957,700...97,976,491
Ensembl chr 6:97,961,346...97,976,465
JBrowse link
G Yod1 YOD1 deubiquitinase involved_in ISS
ISO
GO_REF:0000024
(PMID:27753622)
UniProt
RGD
PMID:27753622 GO_REF:0000024 NCBI chr13:42,175,313...42,177,030
Ensembl chr13:42,174,820...42,177,205
JBrowse link
G Zfyve1 zinc finger FYVE-type containing 1 involved_in ISO (PMID:25578879) RGD PMID:25578879 NCBI chr 6:103,184,938...103,234,111
Ensembl chr 6:103,184,938...103,234,039
JBrowse link
mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO (PMID:21753002), (PMID:25215947) RGD PMID:21753002 PMID:25215947 NCBI chr 3:77,700,936...77,890,221
Ensembl chr 3:77,700,936...77,890,221
JBrowse link
G Arfip2 ADP-ribosylation factor interacting protein 2 involved_in ISO
ISS
(PMID:33773106)
GO_REF:0000024
RGD
UniProt
PMID:33773106 GO_REF:0000024 NCBI chr 1:159,974,255...159,980,398
Ensembl chr 1:159,974,201...159,980,336
JBrowse link
G Atg13 autophagy related 13 involved_in IBA
ISO
PMID:21873635
(MGI:5607224|PMID:21855797)
RGD PMID:21855797 PMID:21873635 MGI:5607224, RGD:13792537 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043
JBrowse link
G Atg14 autophagy related 14 involved_in ISO
IBA
(PMID:23878393)
PMID:21873635
RGD PMID:23878393 PMID:21873635 RGD:13792537 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO (PMID:33773106) RGD PMID:33773106 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103
JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO
IEA
(PMID:33773106)
GO_REF:0000107
RGD
Ensembl
PMID:33773106 GO_REF:0000107 NCBI chr 8:19,807,733...19,817,321
Ensembl chr 8:19,807,766...19,817,321
JBrowse link
G Becn1 beclin 1 involved_in ISO (PMID:23878393) RGD PMID:23878393 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Gba glucosylceramidase beta acts_upstream_of_or_within ISO (MGI:5501380|PMID:23707074) RGD PMID:23707074 MGI:5501380 NCBI chr 2:174,609,437...174,615,457
Ensembl chr 2:174,609,403...174,618,263
JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) RGD PMID:33773106 NCBI chr 2:171,623,668...172,202,576
Ensembl chr 2:171,621,507...172,202,724
JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISS
ISO
GO_REF:0000024
(PMID:28017329)
UniProt
RGD
PMID:28017329 GO_REF:0000024 NCBI chr19:49,665,795...49,673,655
Ensembl chr19:49,665,791...49,677,690
JBrowse link
G Phb2 prohibitin 2 involved_in ISO
IEA
ISS
(PMID:28017329)
GO_REF:0000107
(MGI:6436385|PMID:28017329)
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:28017329 GO_REF:0000024 GO_REF:0000107 MGI:6436385 NCBI chr 4:157,517,662...157,522,268
Ensembl chr 4:157,517,577...157,522,272
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within
ISO (PMID:28017329)
MGI:1921624 (MGI:5603233|PMID:24949970)
RGD PMID:24949970 PMID:28017329 MGI:5603233 NCBI chr 1:48,688,651...49,882,520
Ensembl chr 1:48,690,556...49,882,555
JBrowse link
G Retreg1 reticulophagy regulator 1 acts_upstream_of_or_within ISO (MGI:6370289|PMID:31446166) RGD PMID:31446166 MGI:6370289 NCBI chr 2:76,335,609...76,474,817
Ensembl chr 2:76,335,609...76,493,898
JBrowse link
G Rimoc1 RAB7A interacting MON1-CCZ1 complex subunit 1 involved_in ISO
IEA
(PMID:34432599)
GO_REF:0000107
RGD
Ensembl
PMID:34432599 GO_REF:0000107 NCBI chr 2:53,189,787...53,203,981
Ensembl chr 2:53,189,790...53,203,821
JBrowse link
G Sqstm1 sequestosome 1 involved_in IBA
ISO
PMID:21873635
UniProtKB:Q9JK66 (PMID:20457763)
RGD PMID:20457763 PMID:21873635 RGD:13792537 NCBI chr10:34,525,517...34,536,685
Ensembl chr10:34,525,519...34,536,673
JBrowse link
G Tafazzin tafazzin, phospholipid-lysophospholipid transacylase involved_in ISO (PMID:33096711)
(MGI:6450300|PMID:25919711)
RGD PMID:25919711 PMID:33096711 MGI:6450300 NCBI chr  X:152,065,539...152,076,178
Ensembl chr  X:152,065,609...152,074,001
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO (MGI:5607224|PMID:21855797) RGD PMID:21855797 MGI:5607224 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link
mitophagy by induced vacuole formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata18 spermatogenesis associated 18 involved_in IBA
ISS
IEA
ISO
PMID:21873635
GO_REF:0000024
GO_REF:0000107
(PMID:21264228)
UniProt
Ensembl
RGD
PMID:21264228 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr14:34,531,931...34,558,671
Ensembl chr14:34,531,061...34,558,687
JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 acts_upstream_of_or_within ISO MGI:2683833 (MGI:5888970|PMID:27994061) RGD PMID:27994061 MGI:5888970 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:21975012) RGD PMID:21975012 NCBI chr 3:143,170,822...143,211,376
Ensembl chr 3:143,170,902...143,210,844
JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (MGI:5543871|PMID:23918802) RGD PMID:23918802 MGI:5543871 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547
JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in ISO
ISS
(PMID:25495476)
GO_REF:0000024
RGD
GO_Central
PMID:25495476 GO_REF:0000024 NCBI chr 8:36,544,462...36,589,684
Ensembl chr 8:36,544,535...36,589,683
JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:25495476)
GO_Central
RGD
PMID:25495476 GO_REF:0000024 NCBI chr 6:16,654,572...16,694,628
Ensembl chr 6:16,654,614...16,694,626
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in IBA
ISO
PMID:21873635
(PMID:23916833)
RGD PMID:23916833 PMID:21873635 RGD:13792537 NCBI chr 7:122,826,712...122,987,711
Ensembl chr 7:122,826,696...122,987,703
JBrowse link
G Mtm1 myotubularin 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2450997 (MGI:5510937|PMID:23695157)
RGD PMID:23695157 PMID:21873635 MGI:5510937, RGD:13792537 NCBI chr 6:488,691...506,964
Ensembl chr 6:488,969...506,860
JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISS
ISO
GO_REF:0000024
(PMID:20181828)
UniProt
RGD
PMID:20181828 GO_REF:0000024 NCBI chr 1:181,213,292...181,215,327 JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO
IBA
ISS
(PMID:25484098)
PMID:21873635
GO_REF:0000024
RGD
GO_Central
PMID:25484098 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:54,718,608...54,722,784
Ensembl chr10:54,717,724...54,722,782
JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) RGD PMID:19279012 NCBI chr 5:150,530,523...150,542,635
Ensembl chr 5:150,530,523...150,542,635
JBrowse link
G Scfd1 sec1 family domain containing 1 involved_in ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 6:68,795,810...68,874,076
Ensembl chr 6:68,795,878...68,874,078
JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 2:185,500,029...185,520,811
Ensembl chr 2:185,500,004...185,522,026
JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:45,457,962...45,465,101
Ensembl chr10:45,457,605...45,468,876
JBrowse link
G Tmem39a transmembrane protein 39a involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:31806350)
UniProt
RGD
PMID:31806350 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr11:62,160,631...62,189,964
Ensembl chr11:62,160,631...62,189,964
JBrowse link
negative regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A involved_in ISO (PMID:28223137) RGD PMID:28223137 NCBI chr10:4,927,804...5,123,749
Ensembl chr10:4,928,030...5,123,578
JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO
ISS
IBA
(PMID:25484098)
GO_REF:0000024
PMID:21873635
RGD
GO_Central
PMID:25484098 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:54,718,608...54,722,784
Ensembl chr10:54,717,724...54,722,782
JBrowse link
G Rubcn rubicon autophagy regulator involved_in IBA
ISO
PMID:21873635
(PMID:21062745)
RGD PMID:21062745 PMID:21873635 RGD:13792537 NCBI chr11:67,907,534...67,964,347
Ensembl chr11:67,907,516...67,964,314
JBrowse link
G Tmem39a transmembrane protein 39a involved_in ISO
IBA
ISS
(PMID:31806350)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:31806350 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr11:62,160,631...62,189,964
Ensembl chr11:62,160,631...62,189,964
JBrowse link
G Ubqln4 ubiquilin 4 involved_in ISO (PMID:23459205) RGD PMID:23459205 NCBI chr 2:174,012,726...174,028,062
Ensembl chr 2:174,012,777...174,028,059
JBrowse link
negative regulation of autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adra1a adrenoceptor alpha 1A acts_upstream_of_or_within ISO (MGI:5888970|PMID:27994061) RGD PMID:27994061 MGI:5888970 NCBI chr15:40,830,125...40,935,902
Ensembl chr15:40,832,534...40,927,500
JBrowse link
G Akt1 AKT serine/threonine kinase 1 involved_in ISO (PMID:18387192) RGD PMID:18387192 NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921
JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in ISO
ISS
(MGI:3796473|PMID:18281291)
GO_REF:0000024
(PMID:21358617)
RGD
UniProt
PMID:18281291 PMID:21358617 GO_REF:0000024 MGI:3796473 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Becn1 beclin 1 acts_upstream_of_or_within ISO (MGI:5888970|PMID:27994061) RGD PMID:27994061 MGI:5888970 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Bmf Bcl2 modifying factor involved_in ISO
IBA
(PMID:23629966)
(MGI:5490676|PMID:23629966)
PMID:21873635
RGD PMID:23629966 PMID:21873635 MGI:5490676, RGD:13792537 NCBI chr 3:105,499,534...105,520,159
Ensembl chr 3:105,499,538...105,520,145
JBrowse link
G Cptp ceramide-1-phosphate transfer protein involved_in ISS
ISO
GO_REF:0000024
(PMID:29164996)
UniProt
RGD
PMID:29164996 GO_REF:0000024 NCBI chr 5:166,474,947...166,479,103
Ensembl chr 5:166,474,966...166,479,017
JBrowse link
G Dap death-associated protein involved_in IBA
ISO
PMID:21873635
(PMID:20537536)
RGD PMID:20537536 PMID:21873635 RGD:13792537 NCBI chr 2:82,199,206...82,251,771
Ensembl chr 2:82,199,280...82,251,752
JBrowse link
G Dapl1 death associated protein-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:43,960,993...43,980,940
Ensembl chr 3:43,960,810...43,980,940
JBrowse link
G Eif4e eukaryotic translation initiation factor 4E NOT|involved_in ISO (PMID:18426977) RGD PMID:18426977 NCBI chr 2:227,066,519...227,099,261
Ensembl chr 2:227,066,673...227,098,683
JBrowse link
G Eif4g1 eukaryotic translation initiation factor 4 gamma, 1 involved_in ISO
IEA
(PMID:18426977)
GO_REF:0000107
RGD
Ensembl
PMID:18426977 GO_REF:0000107 NCBI chr11:80,221,919...80,241,958
Ensembl chr11:80,221,919...80,241,941
JBrowse link
G Eif4g2 eukaryotic translation initiation factor 4, gamma 2 involved_in ISO (PMID:18426977) RGD PMID:18426977 NCBI chr 1:165,181,433...165,193,583
Ensembl chr 1:165,181,434...165,193,588
JBrowse link
G Eif4g3 eukaryotic translation initiation factor 4 gamma, 3 NOT|involved_in ISO (PMID:18426977) RGD PMID:18426977 NCBI chr 5:150,197,410...150,418,363
Ensembl chr 5:150,195,226...150,418,363
JBrowse link
G Foxk1 forkhead box K1 involved_in ISO (PMID:25402684) RGD PMID:25402684 NCBI chr12:12,110,119...12,175,089
Ensembl chr12:12,115,950...12,175,089
JBrowse link
G Foxk2 forkhead box K2 involved_in ISO (MGI:5615527|PMID:25402684) RGD PMID:25402684 MGI:5615527 NCBI chr10:106,542,643...106,592,569
Ensembl chr10:106,542,566...106,592,563
JBrowse link
G Gata4 GATA binding protein 4 IMP RGD PMID:19901028 RGD:5131537 NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636
JBrowse link
G Golga2 golgin A2 involved_in ISO (PMID:22735382) RGD PMID:22735382 NCBI chr 3:15,583,862...15,604,279
Ensembl chr 3:15,584,039...15,604,279
JBrowse link
G Herc1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 acts_upstream_of_or_within ISO MGI:3613033 (MGI:4461108|PMID:20041218) RGD PMID:20041218 MGI:4461108 NCBI chr 8:66,857,169...67,070,318
Ensembl chr 8:66,856,935...67,070,312
JBrowse link
G Htr2b 5-hydroxytryptamine receptor 2B involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:20099302)
UniProt
Ensembl
RGD
PMID:20099302 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:86,735,793...86,756,640
Ensembl chr 9:86,742,102...86,755,108
JBrowse link
G Il10 interleukin 10 involved_in ISO (PMID:26962683) RGD PMID:26962683 NCBI chr13:42,472,625...42,477,308
Ensembl chr13:42,472,839...42,477,313
JBrowse link
G Il10ra interleukin 10 receptor subunit alpha involved_in ISO (PMID:26962683) RGD PMID:26962683 NCBI chr 8:45,563,009...45,578,041
Ensembl chr 8:45,563,137...45,578,061
JBrowse link
G Il3 interleukin 3 acts_upstream_of_or_within ISO (MGI:3575206|PMID:15680329) RGD PMID:15680329 MGI:3575206 NCBI chr10:38,405,716...38,408,066
Ensembl chr10:38,405,716...38,408,066
JBrowse link
G Izumo1 izumo sperm-egg fusion 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:96,090,817...96,096,893 JBrowse link
G Kdm4a lysine demethylase 4A involved_in ISO (PMID:25660547) RGD PMID:25660547 NCBI chr 5:131,672,754...131,719,534
Ensembl chr 5:131,672,754...131,719,501
JBrowse link
G Klhl22 kelch-like family member 22 involved_in ISS
ISO
GO_REF:0000024
(PMID:29769719)
UniProt
RGD
PMID:29769719 GO_REF:0000024 NCBI chr11:83,190,891...83,231,746
Ensembl chr11:83,190,891...83,231,770
JBrowse link
G Lep leptin involved_in ISO
ISS
(PMID:25060689)
(MGI:5705211|PMID:25060689)
GO_REF:0000024
RGD
UniProt
PMID:25060689 GO_REF:0000024 MGI:5705211 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262
JBrowse link
G Lepr leptin receptor involved_in ISO
ISS
(PMID:25060689)
GO_REF:0000024
RGD
UniProt
PMID:25060689 GO_REF:0000024 NCBI chr 5:116,294,409...116,477,904
Ensembl chr 5:116,289,823...116,475,908
JBrowse link
G Mcl1 MCL1 apoptosis regulator, BCL2 family member involved_in ISO (PMID:24113155) RGD PMID:24113155 NCBI chr 2:183,219,137...183,235,676
Ensembl chr 2:183,219,220...183,222,303
JBrowse link
G Mir223 microRNA 223 IDA RGD PMID:29608885 RGD:21408565 NCBI chr  X:61,141,887...61,141,996
Ensembl chr  X:61,141,887...61,141,996
JBrowse link
G Mt3 metallothionein 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:4881636|PMID:20544854)
UniProt
RGD
PMID:20544854 GO_REF:0000024 MGI:4881636 NCBI chr19:10,848,754...10,850,158
Ensembl chr19:10,848,755...10,850,158
JBrowse link
G Mtmr9 myotubularin related protein 9 involved_in IBA
ISO
PMID:21873635
UniProtKB:Q96EF0-1 (PMID:22647598)
RGD PMID:22647598 PMID:21873635 RGD:13792537 NCBI chr15:37,769,161...37,791,195
Ensembl chr15:37,769,078...37,791,244
JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in IMP
ISO
ISS
(MGI:5285135|PMID:21258367)
GO_REF:0000024
(PMID:22424946), (PMID:22576015), (PMID:30704899)
RGD
UniProt
PMID:21258367 PMID:22424946 PMID:22576015 PMID:30704899 PMID:24725502 GO_REF:0000024 MGI:5285135, RGD:10040964 NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:158,884,804...158,994,311
JBrowse link
G Nampt nicotinamide phosphoribosyltransferase IMP RGD PMID:26601421 RGD:13781888 NCBI chr 6:49,425,316...49,462,109
Ensembl chr 6:49,424,332...49,462,100
JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISS
ISO
IMP
GO_REF:0000024
(MGI:6283395|PMID:20181828)
(PMID:20181828)
UniProt
RGD
PMID:20181828 PMID:20181828 GO_REF:0000024 MGI:6283395, RGD:14390062 NCBI chr 1:181,213,292...181,215,327 JBrowse link
G Ptk2 protein tyrosine kinase 2 acts_upstream_of_or_within ISO (MGI:5888970|PMID:27994061) RGD PMID:27994061 MGI:5888970 NCBI chr 7:105,126,725...105,331,848
Ensembl chr 7:105,126,728...105,331,783
JBrowse link
G Ptpn22 protein tyrosine phosphatase, non-receptor type 22 involved_in ISO (PMID:23991106) RGD PMID:23991106 NCBI chr 2:191,366,761...191,414,782
Ensembl chr 2:191,366,808...191,414,779
JBrowse link
G Rasip1 Ras interacting protein 1 involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr 1:96,097,078...96,109,564
Ensembl chr 1:96,091,074...96,109,562
JBrowse link
G Rnf5 ring finger protein 5 acts_upstream_of_or_within ISO MGI:3775796 (MGI:5469257|PMID:23093945) RGD PMID:23093945 MGI:5469257 NCBI chr20:4,145,539...4,147,985
Ensembl chr20:4,145,507...4,147,985
JBrowse link
G Rraga Ras-related GTP binding A involved_in ISO
ISS
(PMID:25936802)
GO_REF:0000024
RGD
UniProt
PMID:25936802 GO_REF:0000024 NCBI chr 5:101,113,341...101,114,936
Ensembl chr 5:101,112,859...101,114,510
JBrowse link
G Rubcn rubicon autophagy regulator involved_in ISO (PMID:19270696) RGD PMID:19270696 NCBI chr11:67,907,534...67,964,347
Ensembl chr11:67,907,516...67,964,314
JBrowse link
G Sirt2 sirtuin 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:20543840)
UniProt
RGD
PMID:20543840 GO_REF:0000024 NCBI chr 1:84,053,883...84,076,975
Ensembl chr 1:84,052,903...84,076,975
JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO (PMID:26962683) RGD PMID:26962683 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057
JBrowse link
G Tbc1d14 TBC1 domain family, member 14 involved_in IEA
ISO
GO_REF:0000107
(PMID:22613832)
Ensembl
RGD
PMID:22613832 GO_REF:0000107 NCBI chr14:74,172,652...74,272,182
Ensembl chr14:74,172,664...74,272,183
JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO UniProtKB:P05067|UniProtKB:P49768 (MGI:5906931|PMID:28802038) RGD PMID:28802038 MGI:5906931 NCBI chr 9:12,647,605...12,654,190
Ensembl chr 9:12,647,259...12,654,170
JBrowse link
G Washc1 WASH complex subunit 1 involved_in ISO (MGI:5519172|PMID:23974797) RGD PMID:23974797 MGI:5519172 NCBI chr 9:105,722,779...105,830,836
Ensembl chr 9:105,722,899...105,733,009
JBrowse link
G Wdr6 WD repeat domain 6 involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr 8:109,268,079...109,274,504
Ensembl chr 8:109,268,079...109,274,499
JBrowse link
G Zkscan3 zinc finger with KRAB and SCAN domains 3 involved_in ISO (PMID:23434374) RGD PMID:23434374 NCBI chr17:43,217,168...43,232,828
Ensembl chr17:43,217,222...43,232,827
JBrowse link
negative regulation of autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) RGD PMID:19279012 NCBI chr 5:150,530,523...150,542,635
Ensembl chr 5:150,530,523...150,542,635
JBrowse link
G Tspo translocator protein involved_in ISO (PMID:25470454)
(MGI:5689082|PMID:25470454)
RGD PMID:25470454 MGI:5689082 NCBI chr 7:114,720,188...114,730,450
Ensembl chr 7:114,720,188...114,730,450
JBrowse link
negative regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsa cathepsin A involved_in ISO
ISS
NAS
UniProtKB:P10619 (PMID:12505983)
(MGI:5700310|PMID:12505983)
GO_REF:0000024
RGD
ParkinsonsUK-UCL
PMID:12505983 PMID:12505983 GO_REF:0000024 MGI:5700310, RGD:10412300 NCBI chr 3:153,569,106...153,574,983
Ensembl chr 3:153,568,381...153,576,215
JBrowse link
G Snca synuclein alpha involved_in ISO (PMID:20697033) RGD PMID:20697033 NCBI chr 4:89,696,420...89,797,240
Ensembl chr 4:89,696,420...89,796,262
JBrowse link
negative regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmox1 heme oxygenase 1 acts_upstream_of_or_within ISO MGI:2429784 (MGI:5430482|PMID:20705711) RGD PMID:20705711 MGI:5430482 NCBI chr19:13,466,287...13,474,082
Ensembl chr19:13,467,244...13,474,079
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO (PMID:19640926) RGD PMID:19640926 NCBI chr 7:122,826,712...122,987,711
Ensembl chr 7:122,826,696...122,987,703
JBrowse link
G Lzts1 leucine zipper tumor suppressor 1 involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr16:20,542,756...20,598,204
Ensembl chr16:20,542,809...20,598,203
JBrowse link
G Mtor mechanistic target of rapamycin kinase acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:3690270|PMID:16714284), (MGI:5563734|PMID:23274896)
PMID:21873635
(PMID:25327288)
RGD PMID:16714284 PMID:23274896 PMID:25327288 PMID:21873635 MGI:3690270 MGI:5563734, RGD:13792537 NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:158,884,804...158,994,311
JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of_or_within ISO MGI:1857409|MGI:1891828 (MGI:3723543|PMID:17468177) RGD PMID:17468177 MGI:3723543 NCBI chr18:3,379,482...3,425,100
Ensembl chr18:3,379,482...3,425,049
JBrowse link
G Nrbp2 nuclear receptor binding protein 2 involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr 7:107,798,642...107,805,230
Ensembl chr 7:107,799,497...107,805,230
JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) RGD PMID:19279012 NCBI chr 5:150,530,523...150,542,635
Ensembl chr 5:150,530,523...150,542,635
JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 acts_upstream_of_or_within ISO MGI:4044390 (MGI:5588624|PMID:24797518) RGD PMID:24797518 MGI:5588624 NCBI chr10:63,408,766...63,417,605
Ensembl chr10:63,407,213...63,417,605
JBrowse link
G Qsox1 quiescin sulfhydryl oxidase 1 involved_in ISO (PMID:24475161) RGD PMID:24475161 NCBI chr13:67,949,780...67,987,434
Ensembl chr13:67,949,780...67,987,459
JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:45,457,962...45,465,101
Ensembl chr10:45,457,605...45,468,876
JBrowse link
G Tsc1 TSC complex subunit 1 involved_in IMP PMID:23435171 ParkinsonsUK-UCL PMID:23435171 RGD:10448950 NCBI chr 3:11,969,547...12,018,591
Ensembl chr 3:11,979,729...12,015,674
JBrowse link
G Tsc2 TSC complex subunit 2 IMP RGD PMID:24599401 RGD:11568679 NCBI chr10:13,621,135...13,655,773
Ensembl chr10:13,621,136...13,655,951
JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISO (PMID:22622177) RGD PMID:22622177 NCBI chr10:103,497,349...103,528,877
Ensembl chr10:103,497,349...103,528,877
JBrowse link
negative regulation of macroautophagy by TORC1 signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A involved_in ISO (PMID:28223137) RGD PMID:28223137 NCBI chr10:4,927,804...5,123,749
Ensembl chr10:4,928,030...5,123,578
JBrowse link
negative regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO MGI:5648633 (MGI:5603233|PMID:24949970) RGD PMID:24949970 MGI:5603233 NCBI chr10:4,927,804...5,123,749
Ensembl chr10:4,928,030...5,123,578
JBrowse link
G Rnf41 ring finger protein 41 acts_upstream_of_or_within ISO MGI:1921624 (MGI:5603233|PMID:24949970) RGD PMID:24949970 MGI:5603233 NCBI chr 7:838,160...876,869
Ensembl chr 7:838,203...865,511
JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase acts_upstream_of_or_within ISO MGI:5319187 (MGI:5319065|PMID:22044588) RGD PMID:22044588 MGI:5319065 NCBI chr 4:159,927,138...159,946,094
Ensembl chr 4:159,927,139...159,946,029
JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO MGI:1857263 (MGI:5319065|PMID:22044588) RGD PMID:22044588 MGI:5319065 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Usp30 ubiquitin specific peptidase 30 IMP RGD PMID:24896179 RGD:13208875 NCBI chr12:42,501,345...42,555,311
Ensembl chr12:42,501,348...42,555,616
JBrowse link
negative regulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htra2 HtrA serine peptidase 2 involved_in ISO (MGI:5581539|PMID:24709290) RGD PMID:24709290 MGI:5581539 NCBI chr 4:115,556,914...115,560,202
Ensembl chr 4:115,556,916...115,560,095
JBrowse link
negative regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps13c vacuolar protein sorting 13 homolog C involved_in ISO
ISS
(PMID:26942284)
GO_REF:0000024
RGD
ParkinsonsUK-UCL
PMID:26942284 GO_REF:0000024 NCBI chr 8:68,478,366...68,651,893
Ensembl chr 8:68,478,395...68,651,895
JBrowse link
parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac6 histone deacetylase 6 involved_in ISO
IEA
UniProtKB:Q9JK66|UniProtKB:Q9Z2V5 (PMID:20457763)
GO_REF:0000107
RGD
Ensembl
PMID:20457763 GO_REF:0000107 NCBI chr  X:14,550,645...14,572,445
Ensembl chr  X:14,551,044...14,572,441
JBrowse link
G Mfn2 mitofusin 2 involved_in ISO
IEA
(MGI:5498413|PMID:23620051)
GO_REF:0000107
RGD
Ensembl
PMID:23620051 GO_REF:0000107 MGI:5498413 NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:158,304,287...158,335,342
JBrowse link
G Optn optineurin involved_in ISO
IEA
(PMID:25294927)
GO_REF:0000107
RGD
Ensembl
PMID:25294927 GO_REF:0000107 NCBI chr17:73,209,572...73,260,251
Ensembl chr17:73,209,575...73,260,251
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:19029340) RGD PMID:19029340 NCBI chr 1:48,688,651...49,882,520
Ensembl chr 1:48,690,556...49,882,555
JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (MGI:5298125|PMID:22020285) RGD PMID:22020285 MGI:5298125 NCBI chr12:9,635,009...9,726,520
Ensembl chr12:9,635,025...9,726,519
JBrowse link
pexophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pjvk pejvakin involved_in ISO (MGI:6294584|PMID:30936319) RGD PMID:30936319 MGI:6294584 NCBI chr 3:61,594,644...61,605,051
Ensembl chr 3:61,596,641...61,605,045
JBrowse link
piecemeal microautophagy of the nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg13 autophagy related 13 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043
JBrowse link
G Atg2a autophagy related 2A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
JBrowse link
G Atg2b autophagy related 2B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:124,522,283...124,592,412
Ensembl chr 6:124,525,523...124,592,015
JBrowse link
G Atg7 autophagy related 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,454,030...46,530,407
JBrowse link
positive regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag3 BAG cochaperone 3 involved_in ISO (PMID:18006506) RGD PMID:18006506 NCBI chr 1:183,103,038...183,126,862
Ensembl chr 1:183,102,871...183,126,858
JBrowse link
G Hspb8 heat shock protein family B (small) member 8 involved_in ISO (PMID:18006506) RGD PMID:18006506 NCBI chr12:40,176,405...40,205,002
Ensembl chr12:40,176,532...40,191,185
JBrowse link
G Htt huntingtin involved_in IEA
ISO
GO_REF:0000107
(PMID:25686248)
Ensembl
RGD
PMID:25686248 GO_REF:0000107 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070
JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arsg arylsulfatase G involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:94,412,261...94,551,224
Ensembl chr10:94,447,399...94,542,941
JBrowse link
G Atg2a autophagy related 2A involved_in ISO (PMID:30952800), (PMID:31271352) RGD PMID:30952800 PMID:31271352 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
JBrowse link
G Becn1 beclin 1 IMP RGD PMID:25561470 RGD:11561937 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO
IEA
(PMID:21072319)
GO_REF:0000107
RGD
Ensembl
PMID:21072319 GO_REF:0000107 NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:196,091,646...196,168,716
JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO (PMID:25484098) RGD PMID:25484098 NCBI chr 3:16,223,367...16,264,261
Ensembl chr 3:16,223,367...16,264,154
JBrowse link
G Moap1 modulator of apoptosis 1 involved_in ISO (PMID:33783314)
(MGI:6810697|PMID:33783314)
RGD PMID:33783314 MGI:6810697 NCBI chr 6:121,882,565...121,884,500
Ensembl chr 6:121,882,366...121,898,643
JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr17:81,496,669...81,668,180
Ensembl chr17:81,496,670...81,668,029
JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO (PMID:25578879) RGD PMID:25578879 NCBI chr10:82,706,016...82,734,938
Ensembl chr10:82,701,098...82,734,938
JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO (PMID:25578879) RGD PMID:25578879 NCBI chr 7:63,020,004...63,035,086
Ensembl chr 7:63,020,000...63,035,078
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
ISS
(PMID:25495476)
GO_REF:0000024
RGD
GO_Central
PMID:25495476 GO_REF:0000024 NCBI chr13:39,355,698...39,429,154
Ensembl chr13:39,352,247...39,429,169
JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:25495476)
GO_Central
Ensembl
RGD
PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr13:96,757,430...96,828,930
Ensembl chr13:96,757,460...96,829,478
JBrowse link
G Ralb RAS like proto-oncogene B involved_in ISO
IEA
(PMID:24056301)
GO_REF:0000107
RGD
Ensembl
PMID:24056301 GO_REF:0000107 NCBI chr13:30,588,036...30,624,199
Ensembl chr13:30,588,033...30,624,202
JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 involved_in ISO (PMID:21068542)
(MGI:5634888|PMID:21068542)
RGD PMID:21068542 MGI:5634888 NCBI chr 2:233,750,838...233,784,817
Ensembl chr 2:233,750,838...233,784,784
JBrowse link
G Snx18 sorting nexin 18 involved_in ISO
IEA
(PMID:29437695)
GO_REF:0000107
RGD
Ensembl
PMID:29437695 GO_REF:0000107 NCBI chr 2:45,232,325...45,258,345
Ensembl chr 2:45,232,325...45,258,345
JBrowse link
G Snx30 sorting nexin family member 30 involved_in ISO
IEA
(PMID:32513819)
GO_REF:0000107
RGD
Ensembl
PMID:32513819 GO_REF:0000107 NCBI chr 5:74,683,902...74,813,013
Ensembl chr 5:74,684,015...74,792,631
JBrowse link
G Snx4 sorting nexin 4 involved_in ISO (PMID:32513819), (PMID:33468622) RGD PMID:32513819 PMID:33468622 NCBI chr11:67,460,872...67,518,143
Ensembl chr11:67,460,870...67,518,174
JBrowse link
G Snx7 sorting nexin 7 involved_in ISO
IEA
(PMID:32513819)
GO_REF:0000107
RGD
Ensembl
PMID:32513819 GO_REF:0000107 NCBI chr 2:205,843,164...205,927,737
Ensembl chr 2:205,842,837...205,927,763
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 IMP RGD PMID:23448468 RGD:13208863 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
IEA
ISS
(PMID:31271352)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:31271352 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:14,776,280...14,782,197
Ensembl chr  X:14,776,293...14,782,202
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:31271352) RGD PMID:31271352 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846
JBrowse link
positive regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07025818.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:48,598,506...48,599,444 JBrowse link
G Adrb2 adrenoceptor beta 2 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:23708524)
Ensembl
GO_Central
RGD
PMID:23708524 GO_REF:0000024 GO_REF:0000107 NCBI chr18:55,642,459...55,644,501
Ensembl chr18:55,502,903...55,644,512
JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 involved_in ISO (PMID:25771791) RGD PMID:25771791 NCBI chr10:81,055,467...81,069,298 JBrowse link
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO MGI:5648633 (MGI:5603233|PMID:24949970) RGD PMID:24949970 MGI:5603233 NCBI chr10:4,927,804...5,123,749
Ensembl chr10:4,928,030...5,123,578
JBrowse link
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in ISO
IBA
(PMID:26468287)
PMID:21873635
RGD PMID:26468287 PMID:21873635 RGD:13792537 NCBI chr 8:123,412,105...123,479,315
Ensembl chr 8:123,412,112...123,479,021
JBrowse link
G Irgm immunity-related GTPase M involved_in ISO (PMID:16888103)
(MGI:3656111|PMID:16888103)
RGD PMID:16888103 MGI:3656111 NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578
JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:45,457,962...45,465,101
Ensembl chr10:45,457,605...45,468,876
JBrowse link
positive regulation of autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ager advanced glycosylation end product-specific receptor IMP RGD PMID:22293957 RGD:7245565 NCBI chr20:4,148,150...4,151,361
Ensembl chr20:4,147,890...4,151,078
JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 involved_in IMP
ISO
(MGI:6810795|PMID:24980959)
(PMID:21358617), (PMID:31123703), (PMID:32333458)
RGD PMID:21358617 PMID:24980959 PMID:31123703 PMID:32333458 PMID:25117440 MGI:6810795, RGD:11552604 NCBI chr 3:77,700,936...77,890,221
Ensembl chr 3:77,700,936...77,890,221
JBrowse link
G Atf6 activating transcription factor 6 acts_upstream_of_or_within ISO (PMID:28747345) RGD PMID:28747345 NCBI chr13:82,927,579...83,106,381
Ensembl chr13:82,930,034...83,107,177
JBrowse link
G Atg101 autophagy related 101 involved_in IEA
ISO
GO_REF:0000107
(MGI:6810791|PMID:19225151)
Ensembl
RGD
PMID:19225151 GO_REF:0000107 MGI:6810791 NCBI chr 7:132,398,477...132,407,643
Ensembl chr 7:132,398,483...132,407,633
JBrowse link
G Atg13 autophagy related 13 involved_in ISO (MGI:6810791|PMID:19225151) RGD PMID:19225151 MGI:6810791 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043
JBrowse link
G Atg16l1 autophagy related 16-like 1 involved_in ISO (MGI:6271293|PMID:30208760) RGD PMID:30208760 MGI:6271293 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529
JBrowse link
G Atg7 autophagy related 7 IDA
IMP
RGD PMID:24674959 PMID:25639566 RGD:11553823, RGD:11553824 NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G Becn1 beclin 1 involved_in IMP
ISS
ISO
GO_REF:0000024
(PMID:21358617)
UniProt
RGD
PMID:21358617 PMID:24674959 GO_REF:0000024, RGD:11553823 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Dapk1 death associated protein kinase 1 involved_in ISO (PMID:22095288) RGD PMID:22095288 NCBI chr17:3,930,223...4,090,991
Ensembl chr17:3,930,213...4,090,991
JBrowse link
G Dcn decorin involved_in ISO (PMID:23798385) RGD PMID:23798385 NCBI chr 7:32,281,252...32,321,291
Ensembl chr 7:32,281,252...32,321,270
JBrowse link
G Dhrsx dehydrogenase/reductase X-linked involved_in IBA
ISO
PMID:21873635
(PMID:25076851)
RGD PMID:25076851 PMID:21873635 RGD:13792537 NCBI chr12:16,299,768...16,304,553
Ensembl chr12:16,299,808...16,304,552
JBrowse link
G Endog endonuclease G involved_in ISO
IEA
(PMID:33473107)
GO_REF:0000107
(MGI:6504770|PMID:33473107)
RGD
Ensembl
PMID:33473107 GO_REF:0000107 MGI:6504770 NCBI chr 3:13,449,113...13,451,715
Ensembl chr 3:13,449,086...13,451,932
JBrowse link
G Flcn folliculin involved_in ISO
ISS
(PMID:25126726)
GO_REF:0000024
RGD
UniProt
PMID:25126726 GO_REF:0000024 NCBI chr10:44,588,621...44,607,808
Ensembl chr10:44,588,624...44,607,769
JBrowse link
G Foxo1 forkhead box O1 involved_in ISO
ISS
(PMID:20543840)
GO_REF:0000024
RGD
UniProt
PMID:20543840 GO_REF:0000024 NCBI chr 2:136,312,168...136,390,603
Ensembl chr 2:136,312,168...136,387,790
JBrowse link
G Foxo3 forkhead box O3 involved_in ISO (MGI:3771642|PMID:18054316), (MGI:3771681|PMID:18054315) RGD PMID:18054315 PMID:18054316 MGI:3771642 MGI:3771681 NCBI chr20:45,669,708...45,764,606
Ensembl chr20:45,672,995...45,764,561
JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in ISS
ISO
GO_REF:0000024
(MGI:5319706|PMID:22539723)
UniProt
RGD
PMID:22539723 GO_REF:0000024 MGI:5319706 NCBI chr 1:80,815,843...80,825,732
Ensembl chr 1:80,815,850...80,825,802
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in ISS
ISO
GO_REF:0000024
RNAcentral:URS0000554A4F_10090 (MGI:5319706|PMID:22539723), (MGI:5825416|PMID:26160071)
UniProt
RGD
PMID:22539723 PMID:26160071 GO_REF:0000024 MGI:5319706 MGI:5825416 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in ISO (MGI:3796473|PMID:18281291) RGD PMID:18281291 MGI:3796473 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Hmgb1 high mobility group box 1 involved_in IMP
ISO
(MGI:5634889|PMID:20819940)
(PMID:20819940)
RGD PMID:20819940 PMID:23604926 MGI:5634889, RGD:10402086 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565
JBrowse link
G Hpse heparanase involved_in ISO (PMID:26249176) RGD PMID:26249176 NCBI chr14:8,896,593...8,937,011
Ensembl chr14:8,896,593...8,937,010
JBrowse link
G Ifng interferon gamma involved_in ISO
ISS
(PMID:23629966), (PMID:26347139)
GO_REF:0000024
RGD
UniProt
PMID:23629966 PMID:26347139 GO_REF:0000024 NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375
JBrowse link
G Irgm immunity-related GTPase M involved_in ISO (PMID:16888103), (PMID:25891078), (PMID:28389568)
(MGI:3656111|PMID:16888103)
RGD PMID:16888103 PMID:25891078 PMID:28389568 MGI:3656111 NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578
JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in ISS
ISO
GO_REF:0000024
(MGI:5319706|PMID:22539723)
(PMID:30704899)
UniProt
RGD
PMID:22539723 PMID:30704899 GO_REF:0000024 MGI:5319706 NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO
IBA
(PMID:22012985)
(MGI:4454597|PMID:20457918)
PMID:21873635
RGD PMID:20457918 PMID:22012985 PMID:21873635 MGI:4454597, RGD:13792537 NCBI chr 7:122,826,712...122,987,711
Ensembl chr 7:122,826,696...122,987,703
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IDA RGD PMID:26581593 RGD:12879823 NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147
JBrowse link
G Mefv MEFV innate immuity regulator, pyrin involved_in ISS
ISO
GO_REF:0000024
(PMID:26347139)
UniProt
RGD
PMID:26347139 GO_REF:0000024 NCBI chr10:11,786,948...11,796,977
Ensembl chr10:11,787,422...11,796,973
JBrowse link
G Mid2 midline 2 involved_in ISO (PMID:26347139) RGD PMID:26347139 NCBI chr  X:104,354,692...104,456,757
Ensembl chr  X:104,355,316...104,453,473
JBrowse link
G Mtdh metadherin involved_in ISO (PMID:21127263) RGD PMID:21127263 NCBI chr 7:65,306,464...65,365,647
Ensembl chr 7:65,306,400...65,364,413
JBrowse link
G Nprl2 NPR2-like, GATOR1 complex subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:108,215,823...108,218,996
Ensembl chr 8:108,215,814...108,218,996
JBrowse link
G Optn optineurin involved_in ISO (PMID:21617041) RGD PMID:21617041 NCBI chr17:73,209,572...73,260,251
Ensembl chr17:73,209,575...73,260,251
JBrowse link
G Ormdl3 ORMDL sphingolipid biosynthesis regulator 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:28747345)
MGI:6369059 (MGI:6099440|PMID:28747345)
Ensembl
RGD
PMID:28747345 GO_REF:0000107 MGI:6099440 NCBI chr10:83,590,052...83,598,620
Ensembl chr10:83,590,071...83,598,620
JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha involved_in ISO (PMID:28910396) RGD PMID:28910396 NCBI chr 1:170,577,942...170,684,353
Ensembl chr 1:170,577,942...170,683,472
JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase involved_in ISO (MGI:4361989|PMID:17476689) RGD PMID:17476689 MGI:4361989 NCBI chr  X:14,617,582...14,622,851
Ensembl chr  X:14,617,582...14,622,851
JBrowse link
G Plekhf1 pleckstrin homology and FYVE domain containing 1 involved_in ISO (PMID:22115783) RGD PMID:22115783 NCBI chr 1:90,908,304...90,915,862
Ensembl chr 1:90,904,742...90,915,820
JBrowse link
G Plk2 polo-like kinase 2 involved_in ISO (PMID:23983262) RGD PMID:23983262 NCBI chr 2:41,969,176...41,974,945
Ensembl chr 2:41,969,176...41,974,947
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISO
ISS
(PMID:22012985), (PMID:26103054)
(MGI:5285135|PMID:21258367)
GO_REF:0000024
RGD
UniProt
PMID:21258367 PMID:22012985 PMID:26103054 GO_REF:0000024 MGI:5285135 NCBI chr 2:54,240,298...54,275,978
Ensembl chr 2:54,240,137...54,275,978
JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5285135|PMID:21258367)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21258367 GO_REF:0000024 GO_REF:0000107 MGI:5285135 NCBI chr 5:119,807,992...119,879,987
Ensembl chr 5:119,813,226...119,879,543
JBrowse link
G Prkd1 protein kinase D1 involved_in ISO (PMID:22095288) RGD PMID:22095288 NCBI chr 6:67,725,193...68,039,002
Ensembl chr 6:67,725,905...68,039,042
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:6810791|PMID:19225151)
Ensembl
RGD
PMID:19225151 GO_REF:0000107 MGI:6810791 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Rnf152 ring finger protein 152 involved_in ISO
IBA
ISS
(PMID:25936802)
(MGI:5644195|PMID:25936802)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:25936802 PMID:21873635 GO_REF:0000024 MGI:5644195, RGD:13792537 NCBI chr13:21,324,039...21,403,405
Ensembl chr13:21,323,824...21,403,113
JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 involved_in ISO
IEA
UniProtKB:Q14457 (PMID:27853422)
GO_REF:0000107
RGD
Ensembl
PMID:27853422 GO_REF:0000107 NCBI chr18:1,114,532...1,236,345
Ensembl chr18:1,115,905...1,235,571
JBrowse link
G Sh3bp4 SH3-domain binding protein 4 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:22575674)
UniProt
Ensembl
RGD
PMID:22575674 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:89,660,156...89,739,163
Ensembl chr 9:89,660,156...89,739,163
JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 involved_in ISO (PMID:17891140)
(MGI:3770552|PMID:17891140)
RGD PMID:17891140 MGI:3770552 NCBI chr 2:233,750,838...233,784,817
Ensembl chr 2:233,750,838...233,784,784
JBrowse link
G Smo smoothened, frizzled class receptor IDA RGD PMID:31221056 RGD:150521664 NCBI chr 4:58,344,101...58,372,828
Ensembl chr 4:58,343,529...58,373,829
JBrowse link
G Stk11 serine/threonine kinase 11 involved_in ISO (PMID:23878245) RGD PMID:23878245 NCBI chr 7:9,574,553...9,591,315
Ensembl chr 7:9,575,269...9,591,315
JBrowse link
G Svip small VCP interacting protein involved_in ISO
IBA
(PMID:21909394)
PMID:21873635
RGD PMID:21909394 PMID:21873635 RGD:13792537 NCBI chr 1:101,587,128...101,592,818
Ensembl chr 1:101,587,128...101,593,116
JBrowse link
G Tfeb transcription factor EB involved_in ISO (PMID:21617040), (PMID:22576015), (PMID:23434374) RGD PMID:21617040 PMID:22576015 PMID:23434374 NCBI chr 9:13,198,890...13,254,726
Ensembl chr 9:13,198,891...13,254,714
JBrowse link
G Ticam1 toll-like receptor adaptor molecule 1 involved_in ISO (MGI:3718934|PMID:17658277) RGD PMID:17658277 MGI:3718934 NCBI chr 9:1,102,559...1,115,573
Ensembl chr 9:1,102,366...1,123,147
JBrowse link
G Tlr9 toll-like receptor 9 IDA RGD PMID:18632594 RGD:2301341 NCBI chr 8:106,864,680...106,868,796
Ensembl chr 8:106,864,680...106,868,796
JBrowse link
G Tmem59 transmembrane protein 59 involved_in ISO
IBA
(PMID:23376921)
PMID:21873635
RGD PMID:23376921 PMID:21873635 RGD:13792537 NCBI chr 5:121,962,507...121,983,625
Ensembl chr 5:121,962,440...121,983,625
JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in ISO
ISS
(PMID:22421968), (PMID:22470510)
GO_REF:0000024
RGD
UniProt
PMID:22421968 PMID:22470510 GO_REF:0000024 NCBI chr 5:24,253,986...24,272,250
Ensembl chr 5:24,260,568...24,267,968
JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:143,881,427...143,890,104
Ensembl chr 3:143,882,021...143,890,097
JBrowse link
G Tpcn1 two pore segment channel 1 involved_in ISO
IEA
(PMID:22012985)
GO_REF:0000107
RGD
Ensembl
PMID:22012985 GO_REF:0000107 NCBI chr12:35,972,813...36,029,632
Ensembl chr12:35,972,846...36,029,626
JBrowse link
G Trim14 tripartite motif-containing 14 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,800,032...60,825,481
Ensembl chr 5:60,800,032...60,824,858
JBrowse link
G Trim21 tripartite motif-containing 21 involved_in IBA
ISO
PMID:21873635
(PMID:26347139)
RGD PMID:26347139 PMID:21873635 RGD:13792537 NCBI chr 1:156,964,896...156,987,504
Ensembl chr 1:156,964,913...156,987,440
JBrowse link
G Trim27 tripartite motif-containing 27 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,538,282...43,550,633
Ensembl chr17:43,538,285...43,550,643
JBrowse link
G Trim30 tripartite motif-containing 30 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:158,795,288...158,813,913
Ensembl chr 1:158,720,410...158,814,012
JBrowse link
G Trim30c tripartite motif-containing 30C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:158,766,401...158,787,915
Ensembl chr 1:158,765,969...158,787,183
JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO
IEA
(PMID:31123703)
GO_REF:0000107
RGD
Ensembl
PMID:31123703 GO_REF:0000107 NCBI chr 5:79,005,139...79,016,615
Ensembl chr 5:78,999,389...79,022,018
JBrowse link
G Trim34 tripartite motif-containing 34 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:158,707,172...158,720,214
Ensembl chr 1:158,707,172...158,718,674
JBrowse link
G Trim5 tripartite motif-containing 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:158,720,407...158,737,393
Ensembl chr 1:158,720,410...158,814,012
JBrowse link
G Trim6 tripartite motif containing 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:158,683,746...158,696,936
Ensembl chr 1:158,683,746...158,696,914
JBrowse link
G Trim65 tripartite motif-containing 65 involved_in IBA
ISO
PMID:21873635
(PMID:26347139)
RGD PMID:26347139 PMID:21873635 RGD:13792537 NCBI chr10:101,357,937...101,364,036
Ensembl chr10:101,357,937...101,364,971
JBrowse link
G Trim68 tripartite motif containing 68 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:157,114,044...157,127,494
Ensembl chr 1:157,114,044...157,127,477
JBrowse link
G Trim8 tripartite motif-containing 8 involved_in ISO (PMID:26347139) RGD PMID:26347139 NCBI chr 1:245,369,632...245,384,513
Ensembl chr 1:245,369,632...245,384,513
JBrowse link
G Triml1 tripartite motif family-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:48,994,968...49,005,343
Ensembl chr16:48,997,252...49,005,417
JBrowse link
G Triml2 tripartite motif family-like 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:48,944,838...48,955,453
Ensembl chr16:48,944,838...48,955,453
JBrowse link
G Tsc2 TSC complex subunit 2 involved_in ISO (MGI:5509101|PMID:23878245) RGD PMID:23878245 MGI:5509101 NCBI chr10:13,621,135...13,655,773
Ensembl chr10:13,621,136...13,655,951
JBrowse link
G Ufl1 Ufm1-specific ligase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5818653|PMID:25952549)
UniProt
RGD
PMID:25952549 GO_REF:0000024 MGI:5818653 NCBI chr 5:38,962,721...38,995,134
Ensembl chr 5:38,962,171...38,995,199
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO
IBA
(PMID:25126726)
(MGI:5319706|PMID:22539723), (MGI:6810791|PMID:19225151)
PMID:21873635
RGD PMID:19225151 PMID:22539723 PMID:25126726 PMID:21873635 MGI:5319706 MGI:6810791, RGD:13792537 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,454,030...46,530,407
JBrowse link
G Xbp1 X-box binding protein 1 involved_in ISO (PMID:23184933) RGD PMID:23184933 NCBI chr14:80,390,629...80,395,713
Ensembl chr14:80,390,643...80,395,693
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISO (PMID:22739135)
(MGI:5487497|PMID:22739135)
RGD PMID:22739135 MGI:5487497 NCBI chr 5:137,376,562...137,385,351
Ensembl chr 5:137,376,564...137,385,351
JBrowse link
positive regulation of autophagy in response to ER overload term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2l11 BCL2 like 11 IMP RGD PMID:25772147 RGD:13782257 NCBI chr 3:115,366,783...115,404,068
Ensembl chr 3:115,366,646...115,404,068
JBrowse link
G Bid BH3 interacting domain death agonist IMP RGD PMID:25772147 RGD:13782257 NCBI chr 4:154,113,198...154,136,353
Ensembl chr 4:154,113,198...154,134,720
JBrowse link
G Ddit3 DNA-damage inducible transcript 3 IMP RGD PMID:25772147 RGD:13782257 NCBI chr 7:63,115,645...63,121,203
Ensembl chr 7:63,116,380...63,121,201
JBrowse link
positive regulation of autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2 interacting protein 3 IMP RGD PMID:23698117 RGD:11561968 NCBI chr 1:193,708,164...193,725,348
Ensembl chr 1:193,708,167...193,725,359
JBrowse link
G Fbxo7 F-box protein 7 involved_in IBA
IMP
ISO
PMID:21873635
PMID:26310625
(PMID:26310625)
RGD PMID:26310625 PMID:21873635 PMID:26310625 RGD:13792537, RGD:11536096 NCBI chr 7:17,809,224...17,837,549
Ensembl chr 7:17,809,231...17,837,530
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in IEA
ISO
GO_REF:0000107
(MGI:3796473|PMID:18281291)
Ensembl
RGD
PMID:18281291 GO_REF:0000107 MGI:3796473 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Htt huntingtin involved_in IEA
ISO
GO_REF:0000107
(PMID:25686248)
Ensembl
RGD
PMID:25686248 GO_REF:0000107 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:26310625)