LOC120098596 (gamma-aminobutyric acid receptor-associated protein-like 2) - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC120098596 (gamma-aminobutyric acid receptor-associated protein-like 2) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC120098596 (Ensembl: AABR07072668.1)
Name: gamma-aminobutyric acid receptor-associated protein-like 2
RGD ID: 41293225
Description: Orthologous to human GABARAPL2 (GABA type A receptor associated protein like 2).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07072668.1
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21955,052,756 - 55,053,109 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1955,052,756 - 55,053,109 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1959,991,111 - 59,991,590 (-)NCBIRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039098192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000091620   ⟹   ENSRNOP00000068971
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1955,052,756 - 55,053,109 (-)Ensembl
RefSeq Acc Id: XM_039098192   ⟹   XP_038954120
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21955,052,756 - 55,053,109 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038954120 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_038954120   ⟸   XM_039098192
- UniProtKB: A0A0G2JU55 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000068971   ⟸   ENSRNOT00000091620

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JU55-F1-model_v2 AlphaFold A0A0G2JU55 1-160 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41293225 AgrOrtholog
BioCyc Gene G2FUF-5142 BioCyc
Ensembl Genes ENSRNOG00000033345 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000068971 ENTREZGENE
  ENSRNOP00000068971.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000091620 ENTREZGENE
  ENSRNOT00000091620.2 UniProtKB/TrEMBL
InterPro Atg8-like UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene LOC120098596 ENTREZGENE
PANTHER GAMMA-AMINOBUTYRIC ACID RECEPTOR-ASSOCIATED PROTEIN-LIKE 2 UniProtKB/TrEMBL
  PTHR10969 UniProtKB/TrEMBL
Pfam Atg8 UniProtKB/TrEMBL
PhenoGen LOC120098596 PhenoGen
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt A0A0G2JU55 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120098596  gamma-aminobutyric acid receptor-associated protein-like 2  AABR07072668.1    Data Merged 737654 PROVISIONAL
2021-01-27 LOC120098596  gamma-aminobutyric acid receptor-associated protein-like 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07072668.1        Symbol and Name status set to provisional 45752 PROVISIONAL