Znrf1 (zinc and ring finger 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Znrf1 (zinc and ring finger 1) Rattus norvegicus
Analyze
Symbol: Znrf1
Name: zinc and ring finger 1
RGD ID: 1592195
Description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein K48-linked ubiquitination. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in cytosol and endosome. Predicted to be active in cytoplasm; intracellular membrane-bounded organelle; and membrane. Orthologous to human ZNRF1 (zinc and ring finger 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E3 ubiquitin-protein ligase ZNRF1; LOC690769; similar to zinc ring finger protein 1; zinc and ring finger 1, E3 ubiquitin protein ligase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21939,496,886 - 39,581,600 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1939,496,527 - 39,580,969 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1946,296,356 - 46,380,722 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01946,949,689 - 47,034,049 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01949,254,321 - 49,338,675 (+)NCBIRnor_WKY
Rnor_6.01943,750,205 - 43,834,962 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1943,750,278 - 43,832,878 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01954,557,442 - 54,642,129 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41941,455,386 - 41,537,955 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1938,875,649 - 38,959,752 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19028597   PMID:22057101   PMID:22797923  


Genomics

Comparative Map Data
Znrf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21939,496,886 - 39,581,600 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1939,496,527 - 39,580,969 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1946,296,356 - 46,380,722 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01946,949,689 - 47,034,049 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01949,254,321 - 49,338,675 (+)NCBIRnor_WKY
Rnor_6.01943,750,205 - 43,834,962 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1943,750,278 - 43,832,878 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01954,557,442 - 54,642,129 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41941,455,386 - 41,537,955 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1938,875,649 - 38,959,752 (+)NCBICelera
Cytogenetic Map19q12NCBI
ZNRF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381674,999,024 - 75,110,994 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1674,999,024 - 75,110,994 (+)EnsemblGRCh38hg38GRCh38
GRCh371675,032,922 - 75,144,892 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361673,590,416 - 73,702,393 (+)NCBINCBI36Build 36hg18NCBI36
Build 341673,590,415 - 73,702,393NCBI
Celera1659,325,881 - 59,437,794 (+)NCBICelera
Cytogenetic Map16q23.1NCBI
HuRef1660,784,212 - 60,895,817 (+)NCBIHuRef
CHM1_11676,445,151 - 76,557,062 (+)NCBICHM1_1
T2T-CHM13v2.01681,045,795 - 81,157,694 (+)NCBIT2T-CHM13v2.0
Znrf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398112,262,652 - 112,352,352 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8112,262,729 - 112,352,662 (+)EnsemblGRCm39 Ensembl
GRCm388111,536,484 - 111,625,720 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8111,536,097 - 111,626,030 (+)EnsemblGRCm38mm10GRCm38
MGSCv378114,060,540 - 114,149,930 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368114,423,515 - 114,510,451 (+)NCBIMGSCv36mm8
Celera8115,764,236 - 115,853,550 (+)NCBICelera
Cytogenetic Map8E1NCBI
Znrf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554842,468,392 - 2,566,539 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554842,468,392 - 2,566,539 (-)NCBIChiLan1.0ChiLan1.0
ZNRF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11674,920,141 - 75,030,933 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1674,920,141 - 75,030,933 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01655,567,875 - 55,679,524 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ZNRF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1575,594,465 - 75,698,164 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl575,595,200 - 75,698,170 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha575,570,792 - 75,674,762 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0575,950,710 - 76,054,735 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl575,951,488 - 76,054,338 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1575,855,151 - 75,958,882 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0575,677,829 - 75,781,679 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0576,170,074 - 76,273,880 (-)NCBIUU_Cfam_GSD_1.0
Znrf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934935,670,243 - 35,774,914 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647523,814,194 - 23,916,530 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493647523,814,200 - 23,918,871 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNRF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1612,555,655 - 12,668,807 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2612,430,136 - 12,432,305 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNRF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1560,568,582 - 60,590,699 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604715,469,480 - 15,585,200 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znrf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474611,848,425 - 11,954,784 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474611,847,627 - 11,954,637 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Znrf1
324 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:283
Count of miRNA genes:101
Interacting mature miRNAs:106
Transcripts:ENSRNOT00000025716, ENSRNOT00000051594, ENSRNOT00000072229
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat

Markers in Region
RH142539  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21939,544,740 - 39,544,841 (+)MAPPERmRatBN7.2
Rnor_6.01943,798,114 - 43,798,214NCBIRnor6.0
Rnor_5.01954,605,283 - 54,605,383UniSTSRnor5.0
RGSC_v3.41941,503,234 - 41,503,334UniSTSRGSC3.4
Celera1938,923,816 - 38,923,916UniSTS
RH 3.4 Map19473.2UniSTS
Cytogenetic Map19q12UniSTS
RH142554  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21939,581,269 - 39,581,503 (+)MAPPERmRatBN7.2
Rnor_6.01943,834,632 - 43,834,865NCBIRnor6.0
Rnor_5.01954,641,799 - 54,642,032UniSTSRnor5.0
RGSC_v3.41941,539,691 - 41,539,924UniSTSRGSC3.4
Celera1938,959,422 - 38,959,655UniSTS
RH 3.4 Map19485.8UniSTS
Cytogenetic Map19q12UniSTS
RH143381  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21939,581,034 - 39,581,227 (+)MAPPERmRatBN7.2
Rnor_6.01943,834,397 - 43,834,589NCBIRnor6.0
Rnor_5.01954,641,564 - 54,641,756UniSTSRnor5.0
RGSC_v3.41941,539,456 - 41,539,648UniSTSRGSC3.4
Celera1938,959,187 - 38,959,379UniSTS
RH 3.4 Map19486.8UniSTS
Cytogenetic Map19q12UniSTS
BF411716  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21939,497,975 - 39,498,074 (+)MAPPERmRatBN7.2
Rnor_6.01943,751,354 - 43,751,452NCBIRnor6.0
Rnor_5.01954,558,467 - 54,558,565UniSTSRnor5.0
RGSC_v3.41941,456,312 - 41,456,410UniSTSRGSC3.4
Celera1938,877,161 - 38,877,259UniSTS
RH 3.4 Map19487.2UniSTS
Cytogenetic Map19q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 55 39 19 39 8 11 74 35 41 11 8
Low 2 2 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001401079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002725417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003751882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC114198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000025716   ⟹   ENSRNOP00000025716
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1939,497,050 - 39,580,969 (+)Ensembl
Rnor_6.0 Ensembl1943,750,278 - 43,832,878 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095580   ⟹   ENSRNOP00000093092
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1939,496,872 - 39,578,073 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117072   ⟹   ENSRNOP00000083192
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1939,496,527 - 39,580,969 (+)Ensembl
RefSeq Acc Id: XM_003751882   ⟹   XP_003751930
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21939,496,886 - 39,581,600 (+)NCBI
Rnor_6.01943,750,205 - 43,834,962 (+)NCBI
Rnor_5.01954,557,442 - 54,642,129 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255650   ⟹   XP_006255712
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21939,496,886 - 39,581,600 (+)NCBI
Rnor_6.01943,750,205 - 43,834,962 (+)NCBI
Rnor_5.01954,557,442 - 54,642,129 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255651   ⟹   XP_006255713
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21939,496,886 - 39,581,600 (+)NCBI
Rnor_6.01943,750,205 - 43,834,962 (+)NCBI
Rnor_5.01954,557,442 - 54,642,129 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255652   ⟹   XP_006255714
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21939,496,886 - 39,581,600 (+)NCBI
Rnor_6.01943,750,205 - 43,834,962 (+)NCBI
Rnor_5.01954,557,442 - 54,642,129 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255653   ⟹   XP_006255715
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21939,496,886 - 39,581,600 (+)NCBI
Rnor_6.01943,750,205 - 43,834,962 (+)NCBI
Rnor_5.01954,557,442 - 54,642,129 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098265   ⟹   XP_038954193
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21939,496,886 - 39,581,600 (+)NCBI
RefSeq Acc Id: XM_039098266   ⟹   XP_038954194
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21939,496,886 - 39,577,251 (+)NCBI
RefSeq Acc Id: XM_039098267   ⟹   XP_038954195
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21939,496,886 - 39,512,794 (+)NCBI
RefSeq Acc Id: XM_039098268   ⟹   XP_038954196
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21939,496,886 - 39,564,788 (+)NCBI
RefSeq Acc Id: XM_039098269   ⟹   XP_038954197
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21939,513,108 - 39,581,600 (+)NCBI
RefSeq Acc Id: XM_039098270   ⟹   XP_038954198
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21939,500,206 - 39,581,600 (+)NCBI
RefSeq Acc Id: XR_005497031
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21939,547,316 - 39,581,600 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_003751930   ⟸   XM_003751882
- Peptide Label: isoform X2
- UniProtKB: D3ZIQ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255712   ⟸   XM_006255650
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZUZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255714   ⟸   XM_006255652
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZUZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255713   ⟸   XM_006255651
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZUZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255715   ⟸   XM_006255653
- Peptide Label: isoform X2
- UniProtKB: D3ZIQ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000025716   ⟸   ENSRNOT00000025716
RefSeq Acc Id: XP_038954193   ⟸   XM_039098265
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038954194   ⟸   XM_039098266
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038954196   ⟸   XM_039098268
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038954195   ⟸   XM_039098267
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038954198   ⟸   XM_039098270
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038954197   ⟸   XM_039098269
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000083192   ⟸   ENSRNOT00000117072
RefSeq Acc Id: ENSRNOP00000093092   ⟸   ENSRNOT00000095580
Protein Domains
RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZIQ9-F1-model_v2 AlphaFold D3ZIQ9 1-227 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701160
Promoter ID:EPDNEW_R11673
Type:single initiation site
Name:Znrf1_1
Description:zinc and ring finger 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01943,750,273 - 43,750,333EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1592195 AgrOrtholog
BioCyc Gene G2FUF-5646 BioCyc
Ensembl Genes ENSRNOG00000019028 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000025716 ENTREZGENE
  ENSRNOP00000025716.3 UniProtKB/TrEMBL
  ENSRNOP00000083192 ENTREZGENE
  ENSRNOP00000083192.1 UniProtKB/TrEMBL
  ENSRNOP00000093092 ENTREZGENE
  ENSRNOP00000093092.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025716 ENTREZGENE
  ENSRNOT00000025716.7 UniProtKB/TrEMBL
  ENSRNOT00000095580 ENTREZGENE
  ENSRNOT00000095580.1 UniProtKB/TrEMBL
  ENSRNOT00000117072 ENTREZGENE
  ENSRNOT00000117072.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report rno:690769 UniProtKB/TrEMBL
NCBI Gene 690769 ENTREZGENE
Pfam zf-RING_2 UniProtKB/TrEMBL
PhenoGen Znrf1 PhenoGen
PROSITE ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
UniProt A0A8I5ZUZ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AGK9_RAT UniProtKB/TrEMBL
  D3ZIQ9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-18 Znrf1  zinc and ring finger 1  Znrf1  zinc and ring finger 1, E3 ubiquitin protein ligase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-02 Znrf1  zinc and ring finger 1, E3 ubiquitin protein ligase  LOC690769  similar to zinc ring finger protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC690769  similar to zinc ring finger protein 1  LOC687239  similar to zinc ring finger protein 1  Data Merged 1643240 APPROVED
2006-11-20 LOC690769  similar to zinc ring finger protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC687239  similar to zinc ring finger protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL