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Gene: Vps13d (vacuolar protein sorting 13 homolog D) Rattus norvegicus
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Symbol: Vps13d
Name: vacuolar protein sorting 13 homolog D
Description: Predicted to be involved in mitochondrion organization; positive regulation of mitophagy; and protein localization to organelle. Predicted to localize to extrinsic component of membrane. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 4. Orthologous to human VPS13D (vacuolar protein sorting 13 homolog D); INTERACTS WITH 2,4-dinitrotoluene; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC313825; vacuolar protein sorting 13 homolog D (S. cerevisiae); vacuolar protein sorting 13D; vacuolar protein sorting 13D (yeast); vacuolar protein sorting-associated protein 13D
Orthologs:
Homo sapiens (human) : VPS13D (vacuolar protein sorting 13 homolog D)  HGNC  Alliance
Mus musculus (house mouse) : Vps13d (vacuolar protein sorting 13D)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vps13d (vacuolar protein sorting 13 homolog D)
Pan paniscus (bonobo/pygmy chimpanzee) : VPS13D (vacuolar protein sorting 13 homolog D)
Canis lupus familiaris (dog) : VPS13D (vacuolar protein sorting 13 homolog D)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vps13d (vacuolar protein sorting 13 homolog D)
Sus scrofa (pig) : VPS13D (vacuolar protein sorting 13 homolog D)
Chlorocebus sabaeus (African green monkey) : VPS13D (vacuolar protein sorting 13 homolog D)
Heterocephalus glaber (naked mole-rat) : Vps13d (vacuolar protein sorting 13 homolog D)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05162,891,451 - 163,119,239 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5162,891,451 - 163,119,239 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05166,572,596 - 166,798,221 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45163,423,921 - 163,649,390 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15163,436,292 - 163,659,522 (-)NCBI
Celera5155,120,166 - 155,345,428 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Vps13d
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1308403
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.