Acbd5 (acyl-CoA binding domain containing 5) - Rat Genome Database

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Gene: Acbd5 (acyl-CoA binding domain containing 5) Rattus norvegicus
Analyze
Symbol: Acbd5
Name: acyl-CoA binding domain containing 5
RGD ID: 1309411
Description: Predicted to enable fatty-acyl-CoA binding activity. Predicted to be involved in autophagy of peroxisome and fatty acid metabolic process. Predicted to be located in nucleoplasm. Predicted to be active in peroxisome. Human ortholog(s) of this gene implicated in retinal dystrophy with leukodystrophy. Orthologous to human ACBD5 (acyl-CoA binding domain containing 5); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: acyl-CoA-binding domain-containing protein 5; acyl-Coenzyme A binding domain containing 5; LOC307170
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21785,206,178 - 85,248,909 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1785,206,303 - 85,248,215 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1788,690,500 - 88,732,433 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01792,525,889 - 92,567,809 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01786,542,673 - 86,584,588 (+)NCBIRnor_WKY
Rnor_6.01789,882,465 - 89,923,982 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1789,883,615 - 89,923,423 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01791,547,980 - 91,589,933 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41796,677,365 - 96,716,091 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11796,686,182 - 96,728,835 (+)NCBI
Celera1783,649,881 - 83,688,324 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19946888   PMID:24535825  


Genomics

Comparative Map Data
Acbd5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21785,206,178 - 85,248,909 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1785,206,303 - 85,248,215 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1788,690,500 - 88,732,433 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01792,525,889 - 92,567,809 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01786,542,673 - 86,584,588 (+)NCBIRnor_WKY
Rnor_6.01789,882,465 - 89,923,982 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1789,883,615 - 89,923,423 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01791,547,980 - 91,589,933 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41796,677,365 - 96,716,091 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11796,686,182 - 96,728,835 (+)NCBI
Celera1783,649,881 - 83,688,324 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
ACBD5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381027,182,838 - 27,242,111 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1027,168,135 - 27,243,046 (-)EnsemblGRCh38hg38GRCh38
GRCh371027,471,767 - 27,531,040 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361027,524,149 - 27,571,065 (-)NCBINCBI36Build 36hg18NCBI36
Build 341027,525,752 - 27,569,718NCBI
Celera1027,200,570 - 27,247,485 (-)NCBICelera
Cytogenetic Map10p12.1NCBI
HuRef1027,152,803 - 27,199,482 (-)NCBIHuRef
CHM1_11027,484,073 - 27,531,001 (-)NCBICHM1_1
T2T-CHM13v2.01027,212,829 - 27,272,127 (-)NCBIT2T-CHM13v2.0
Acbd5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39222,958,178 - 23,004,525 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl222,958,179 - 23,005,570 (+)EnsemblGRCm39 Ensembl
GRCm38223,068,166 - 23,114,513 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl223,068,167 - 23,115,558 (+)EnsemblGRCm38mm10GRCm38
MGSCv37222,923,721 - 22,970,033 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36222,891,458 - 22,936,519 (+)NCBIMGSCv36mm8
Celera222,799,879 - 22,846,172 (+)NCBICelera
Cytogenetic Map2A3NCBI
Acbd5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554292,621,904 - 2,659,537 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554292,623,042 - 2,661,182 (-)NCBIChiLan1.0ChiLan1.0
ACBD5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11027,654,359 - 27,712,710 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1027,666,395 - 27,711,423 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01027,292,094 - 27,351,332 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ACBD5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.126,873,207 - 6,923,152 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl26,874,831 - 6,922,082 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha25,626,332 - 5,676,376 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.025,062,819 - 5,112,916 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.124,440,160 - 4,490,195 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.024,516,672 - 4,569,045 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.024,683,337 - 4,734,042 (-)NCBIUU_Cfam_GSD_1.0
Acbd5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934426,059,656 - 26,104,217 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364842,224,308 - 2,268,302 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACBD5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1048,866,933 - 48,922,262 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11048,883,116 - 48,922,377 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21054,189,852 - 54,228,634 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACBD5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1926,795,072 - 26,844,013 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl926,794,822 - 26,842,134 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605132,804,512 - 32,852,650 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acbd5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247962,261,009 - 2,297,982 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH131811  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21785,247,764 - 85,247,977 (-)MAPPERmRatBN7.2
Rnor_6.01789,882,703 - 89,882,915NCBIRnor6.0
Rnor_5.01791,548,218 - 91,548,430UniSTSRnor5.0
RGSC_v3.41796,717,555 - 96,717,767UniSTSRGSC3.4
RH 3.4 Map17843.8UniSTS
Cytogenetic Map17q12.3UniSTS
UniSTS:234876  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.251,451,157 - 1,451,465 (+)MAPPERmRatBN7.2
Rnor_6.01789,879,912 - 89,880,219NCBIRnor6.0
Rnor_6.05846,487 - 846,794NCBIRnor6.0
Rnor_5.05841,674 - 841,981UniSTSRnor5.0
Rnor_5.01791,544,829 - 91,545,136UniSTSRnor5.0
RGSC_v3.45520,113 - 520,420UniSTSRGSC3.4
Celera51,095,352 - 1,095,659UniSTS
Cytogenetic Map5q11UniSTS
Cytogenetic Map17q12.3UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)176078142686533673Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:27
Count of miRNA genes:26
Interacting mature miRNAs:27
Transcripts:ENSRNOT00000066061
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 33 57 41 19 41 8 10 74 35 41 11 8
Low 10 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001077635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005495289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC101874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC160814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF026991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF026992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000076964   ⟹   ENSRNOP00000068154
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1785,207,076 - 85,248,215 (+)Ensembl
Rnor_6.0 Ensembl1789,883,615 - 89,923,423 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093822   ⟹   ENSRNOP00000076762
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1785,206,303 - 85,246,305 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104691   ⟹   ENSRNOP00000092017
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1785,207,076 - 85,248,215 (+)Ensembl
RefSeq Acc Id: NM_001077635   ⟹   NP_001071103
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,207,440 - 85,246,301 (+)NCBI
Rnor_6.01789,884,377 - 89,923,422 (-)NCBI
Rnor_5.01791,547,980 - 91,589,933 (-)NCBI
RGSC_v3.41796,677,365 - 96,716,091 (+)RGD
Celera1783,649,881 - 83,688,324 (-)RGD
Sequence:
RefSeq Acc Id: XM_006254343   ⟹   XP_006254405
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,207,120 - 85,248,909 (+)NCBI
Rnor_6.01789,882,465 - 89,923,742 (-)NCBI
Rnor_5.01791,547,980 - 91,589,933 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006254344   ⟹   XP_006254406
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,207,106 - 85,248,909 (+)NCBI
Rnor_6.01789,882,465 - 89,923,742 (-)NCBI
Rnor_5.01791,547,980 - 91,589,933 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006254345   ⟹   XP_006254407
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,206,609 - 85,248,909 (+)NCBI
Rnor_6.01789,882,465 - 89,923,982 (-)NCBI
Rnor_5.01791,547,980 - 91,589,933 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006254351   ⟹   XP_006254413
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,207,120 - 85,248,909 (+)NCBI
Rnor_6.01789,882,465 - 89,923,742 (-)NCBI
Rnor_5.01791,547,980 - 91,589,933 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600575   ⟹   XP_017456064
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,207,120 - 85,248,909 (+)NCBI
Rnor_6.01789,882,465 - 89,923,742 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600577   ⟹   XP_017456066
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,207,120 - 85,248,909 (+)NCBI
Rnor_6.01789,882,465 - 89,923,742 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600579   ⟹   XP_017456068
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,207,120 - 85,248,909 (+)NCBI
Rnor_6.01789,882,465 - 89,923,742 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600581   ⟹   XP_017456070
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,207,120 - 85,248,909 (+)NCBI
Rnor_6.01789,882,465 - 89,923,742 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600582   ⟹   XP_017456071
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,207,101 - 85,248,909 (+)NCBI
Rnor_6.01789,882,465 - 89,923,768 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039095810   ⟹   XP_038951738
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,207,120 - 85,248,909 (+)NCBI
RefSeq Acc Id: XM_039095811   ⟹   XP_038951739
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,207,120 - 85,248,909 (+)NCBI
RefSeq Acc Id: XM_039095812   ⟹   XP_038951740
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,206,178 - 85,248,909 (+)NCBI
RefSeq Acc Id: XM_039095813   ⟹   XP_038951741
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,206,178 - 85,248,909 (+)NCBI
RefSeq Acc Id: XM_039095814   ⟹   XP_038951742
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,206,178 - 85,248,909 (+)NCBI
RefSeq Acc Id: XM_039095815   ⟹   XP_038951743
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,207,120 - 85,248,909 (+)NCBI
RefSeq Acc Id: XM_039095816   ⟹   XP_038951744
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,207,120 - 85,248,909 (+)NCBI
RefSeq Acc Id: XM_039095817   ⟹   XP_038951745
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,207,120 - 85,248,909 (+)NCBI
RefSeq Acc Id: XR_005495289
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21785,207,120 - 85,248,909 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001071103   ⟸   NM_001077635
- UniProtKB: A0FKI7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006254407   ⟸   XM_006254345
- Peptide Label: isoform X7
- UniProtKB: Q3T1K2 (UniProtKB/Swiss-Prot),   A0FKI7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006254413   ⟸   XM_006254351
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006254406   ⟸   XM_006254344
- Peptide Label: isoform X17
- UniProtKB: A0FKI7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006254405   ⟸   XM_006254343
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017456071   ⟸   XM_017600582
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_017456066   ⟸   XM_017600577
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017456070   ⟸   XM_017600581
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_017456064   ⟸   XM_017600575
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017456068   ⟸   XM_017600579
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSRNOP00000068154   ⟸   ENSRNOT00000076964
RefSeq Acc Id: XP_038951740   ⟸   XM_039095812
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038951741   ⟸   XM_039095813
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038951742   ⟸   XM_039095814
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038951739   ⟸   XM_039095811
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038951743   ⟸   XM_039095815
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038951745   ⟸   XM_039095817
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038951738   ⟸   XM_039095810
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038951744   ⟸   XM_039095816
- Peptide Label: isoform X15
RefSeq Acc Id: ENSRNOP00000076762   ⟸   ENSRNOT00000093822
RefSeq Acc Id: ENSRNOP00000092017   ⟸   ENSRNOT00000104691
Protein Domains
ACB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0FKI7-F1-model_v2 AlphaFold A0FKI7 1-506 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700616
Promoter ID:EPDNEW_R11139
Type:single initiation site
Name:Acbd5_1
Description:acyl-CoA binding domain containing 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01789,923,422 - 89,923,482EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309411 AgrOrtholog
BioCyc Gene G2FUF-8479 BioCyc
Ensembl Genes ENSRNOG00000017642 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000068154 ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOP00000076762 ENTREZGENE
  ENSRNOP00000076762.1 UniProtKB/TrEMBL
  ENSRNOP00000092017 ENTREZGENE
  ENSRNOP00000092017.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000076964 ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOT00000093822 ENTREZGENE
  ENSRNOT00000093822.1 UniProtKB/TrEMBL
  ENSRNOT00000104691 ENTREZGENE
  ENSRNOT00000104691.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5621330 IMAGE-MGC_LOAD
  IMAGE:7443405 IMAGE-MGC_LOAD
InterPro ACBD5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acyl-CoA-binding_prot_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acyl-CoA-binding_protein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acyl-CoA-binding_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:307170 UniProtKB/Swiss-Prot
MGC_CLONE MGC:124766 IMAGE-MGC_LOAD
  MGC:187233 IMAGE-MGC_LOAD
NCBI Gene 307170 ENTREZGENE
Pfam ACBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Acbd5 PhenoGen
PIRSF MA_DBI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS ACOABINDINGP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ACB_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACB_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47027 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A096MJJ6_RAT UniProtKB/TrEMBL
  A0A8I5Y939_RAT UniProtKB/TrEMBL
  A0A8I6AH07_RAT UniProtKB/TrEMBL
  A0FKI7 ENTREZGENE, UniProtKB/Swiss-Prot
  B1H213_RAT UniProtKB/TrEMBL
  Q3T1K2 ENTREZGENE
UniProt Secondary A0FKI6 UniProtKB/Swiss-Prot
  Q3T1K2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-28 Acbd5  acyl-CoA binding domain containing 5  Acbd5  acyl-Coenzyme A binding domain containing 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Acbd5  acyl-Coenzyme A binding domain containing 5  Acbd5_predicted  acyl-Coenzyme A binding domain containing 5 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Acbd5_predicted  acyl-Coenzyme A binding domain containing 5 (predicted)      Symbol and Name status set to approved 70820 APPROVED