Gabarapl3 (GABA type A receptor associated protein like 3) - Rat Genome Database

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Gene: Gabarapl3 (GABA type A receptor associated protein like 3) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Gabarapl3 (Ensembl: AABR07071000.1)
Name: GABA type A receptor associated protein like 3 (Ensembl:GABA(A) receptor-associated protein-like 2-like)
RGD ID: 2323108
Description: Predicted to be involved in protein localization to endoplasmic reticulum. Predicted to be located in autophagosome. Orthologous to human GABARAPL2 (GABA type A receptor associated protein like 2).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: AABR07071000.1; GABA(A) receptor-associated protein-like 2-like; gamma-aminobutyric acid receptor-associated protein-like 2; LOC100359937
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Gabarapl2  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2889,246,175 - 89,247,132 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl889,246,195 - 89,247,139 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0895,943,674 - 95,944,604 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1944,164,935 - 44,175,770 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0895,438,897 - 95,439,699 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4893,566,536 - 93,567,393 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gabarapl3
6 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83646953599083736Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84071306693965294Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)84329616998968765Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)84329616998968765Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088624Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)84653172299083736Rat
2303570Gluco48Glucose level QTL 482blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)84980583194805831Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)85404374498968765Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)85423764499103503Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000047078   ⟹   ENSRNOP00000092094
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl889,246,195 - 89,247,139 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000048998   ⟹   ENSRNOP00000040067
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1939,910,545 - 39,924,628 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106569   ⟹   ENSRNOP00000080839
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1939,910,546 - 39,920,740 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115254   ⟹   ENSRNOP00000097574
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1939,910,534 - 39,913,487 (+)Ensembl
RefSeq Acc Id: XM_002729947   ⟹   XP_002729993
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2889,246,175 - 89,247,132 (+)NCBI
Rnor_6.0895,943,674 - 95,944,604 (+)NCBI
Rnor_5.0895,438,897 - 95,439,699 (+)NCBI
RGSC_v3.4893,566,536 - 93,567,393 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs XP_002729993 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein P60522 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_002729993   ⟸   XM_002729947
- UniProtKB: P60522 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000092094   ⟸   ENSRNOT00000047078
RefSeq Acc Id: ENSRNOP00000080839   ⟸   ENSRNOT00000106569
RefSeq Acc Id: ENSRNOP00000097574   ⟸   ENSRNOT00000115254
RefSeq Acc Id: ENSRNOP00000040067   ⟸   ENSRNOT00000048998

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P60522-F1-model_v2 AlphaFold P60522 1-117 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2323108 AgrOrtholog
BioCyc Gene G2FUF-29613 BioCyc
Ensembl Genes ENSRNOG00000019425 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00000051416 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000040067.3 UniProtKB/Swiss-Prot
  ENSRNOP00000080839.1 UniProtKB/TrEMBL
  ENSRNOP00000092094 ENTREZGENE
  ENSRNOP00000092094.1 UniProtKB/Swiss-Prot
  ENSRNOP00000097574.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047078 ENTREZGENE
  ENSRNOT00000047078.5 UniProtKB/Swiss-Prot
  ENSRNOT00000048998.4 UniProtKB/Swiss-Prot
  ENSRNOT00000106569.1 UniProtKB/TrEMBL
  ENSRNOT00000115254.1 UniProtKB/TrEMBL
InterPro Atg8-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:100359937 UniProtKB/Swiss-Prot
  rno:64670 UniProtKB/Swiss-Prot
NCBI Gene 100359937 ENTREZGENE
PANTHER GAMMA-AMINOBUTYRIC ACID RECEPTOR-ASSOCIATED PROTEIN-LIKE 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10969 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Atg8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gabarapl3 PhenoGen
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6ASX5_RAT UniProtKB/TrEMBL
  A0A8I6G540_RAT UniProtKB/TrEMBL
  GBRL2_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary O08765 UniProtKB/Swiss-Prot
  Q9DCP8 UniProtKB/Swiss-Prot
  Q9UQF7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-23 Gabarapl3  GABA type A receptor associated protein like 3  LOC100359937  GABA(A) receptor-associated protein-like 2-like  Name and Symbol changed 629549 APPROVED
2022-06-02 LOC100359937  GABA(A) receptor-associated protein-like 2-like  AABR07071000.1    Data Merged 737654 PROVISIONAL
2019-11-08 AABR07071000.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2010-05-06 LOC100359937  GABA(A) receptor-associated protein-like 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL