ONTOLOGY REPORT - ANNOTATIONS
Term: autophagosome organization
Accession: GO:1905037
browse the term
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an autophagosome.
Synonyms: exact_synonym: autophagic vacuole organization
related_synonym: initial autophagic vacuole organization
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Atp13a2
ATPase cation transporting 13A2
involved_in
ISO IEA
(PMID:22186024) GO_REF:0000107
RGD Ensembl
PMID:22186024
GO_REF:0000107
NCBI chr 5:153,292,722...153,312,143
Ensembl chr 5:158,575,749...158,595,156
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Gba1
glucosylceramidase beta 1
acts_upstream_of_or_within
ISO IEA
(PMID:23707074) GO_REF:0000107
RGD Ensembl
PMID:23707074
GO_REF:0000107
NCBI chr 2:174,609,437...174,615,457
Ensembl chr 2:176,907,154...176,916,985
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Pik3c2a
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha
acts_upstream_of_or_within
ISO
MGI:2685045 (PMID:24098492)
RGD
PMID:24098492
NCBI chr 1:170,577,942...170,684,353
Ensembl chr 1:180,012,248...180,117,773
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Pik3c2b
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta
acts_upstream_of_or_within
ISO IEA
MGI:1203729 (PMID:24098492) GO_REF:0000107
RGD Ensembl
PMID:24098492
GO_REF:0000107
NCBI chr13:44,494,673...44,555,663
Ensembl chr13:47,047,127...47,107,725
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Spg11
SPG11 vesicle trafficking associated, spatacsin
acts_upstream_of_or_within
ISO IEA
(PMID:25365221) GO_REF:0000107
RGD Ensembl
PMID:25365221
GO_REF:0000107
NCBI chr 3:109,007,658...109,072,904
Ensembl chr 3:129,461,477...129,526,742
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Zfyve26
zinc finger FYVE-type containing 26
acts_upstream_of_or_within
ISO IEA
(PMID:25365221) GO_REF:0000107
RGD Ensembl
PMID:25365221
GO_REF:0000107
NCBI chr 6:103,764,864...103,828,520
Ensembl chr 6:103,765,510...103,828,463
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Ambra1
autophagy and beclin 1 regulator 1
involved_in acts_upstream_of_or_within
ISO IEA IBA
(PMID:20921139), (PMID:25215947) (PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:28890335), (PMID:30778222), (PMID:33637724) GO_REF:0000107 GO_REF:0000033 (PMID:23524951)
RGD Ensembl GO_Central
PMID:20713597 PMID:20921139 PMID:23202584 PMID:23392225 PMID:23524951 PMID:25215947 PMID:25891078 PMID:28890335 PMID:30778222 PMID:33637724 More...
GO_REF:0000033 GO_REF:0000107
NCBI chr 3:98,156,626...98,345,876
Ensembl chr 3:98,156,652...98,345,872
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Ap4m1
adaptor related protein complex 4 subunit mu 1
involved_in
ISO IEA ISS
(PMID:29180427) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:29180427
GO_REF:0000024 GO_REF:0000107
NCBI chr12:17,049,766...17,055,954
Ensembl chr12:22,163,466...22,171,731
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Ap5z1
adaptor related protein complex 5 subunit zeta 1
acts_upstream_of_or_within
ISO
MGI:4460281 (PMID:30930081)
RGD
PMID:30930081
NCBI chr12:12,093,834...12,109,043
Ensembl chr12:17,207,315...17,222,467
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Atg10
autophagy related 10
involved_in acts_upstream_of_or_within
ISO IBA
(PMID:16963840) (PMID:23202584) GO_REF:0000033
RGD GO_Central
PMID:16963840 PMID:23202584
GO_REF:0000033
NCBI chr 2:22,109,304...22,398,313
Ensembl chr 2:23,844,482...24,133,368
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Atg101
autophagy related 101
involved_in
ISO IBA
(PMID:19225151), (PMID:19597335) GO_REF:0000033
RGD GO_Central
PMID:19225151 PMID:19597335
GO_REF:0000033
NCBI chr 7:132,398,477...132,407,643
Ensembl chr 7:134,272,847...134,286,379
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Atg12
autophagy related 12
involved_in
IEA IBA ISO
GO_REF:0000002 GO_REF:0000033 (PMID:11266458)
InterPro GO_Central RGD
PMID:11266458
GO_REF:0000002 GO_REF:0000033
NCBI chr18:39,452,247...39,462,424
Ensembl chr18:41,635,835...41,649,261
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Atg13
autophagy related 13
involved_in acts_upstream_of_or_within
ISO IEA
(PMID:19211835), (PMID:19225151) (PMID:19211835), (PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:28890335), (PMID:30778222), (PMID:33637724) GO_REF:0000107 GO_REF:0000002 (PMID:19225151), (PMID:19258318)
RGD Ensembl InterPro
PMID:19211835 PMID:19225151 PMID:19258318 PMID:20713597 PMID:23202584 PMID:23392225 PMID:23524951 PMID:25891078 PMID:28890335 PMID:30778222 PMID:33637724 More...
GO_REF:0000002 GO_REF:0000107
NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:98,101,552...98,136,743
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Atg14
autophagy related 14
involved_in acts_upstream_of_or_within
ISO IEA IBA
(PMID:19270696), (PMID:20713597) (PMID:25891078), (PMID:33637724) GO_REF:0000107 GO_REF:0000033
RGD Ensembl GO_Central
PMID:19270696 PMID:20713597 PMID:25891078 PMID:33637724
GO_REF:0000033 GO_REF:0000107
NCBI chr15:20,795,750...20,827,113
Ensembl chr15:23,275,457...23,306,815
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Atg16l1
autophagy related 16-like 1
involved_in acts_upstream_of_or_within
ISO IEA IBA
(PMID:30778222) (PMID:23202584) GO_REF:0000117 GO_REF:0000107 GO_REF:0000002 (PMID:11266458) GO_REF:0000033
RGD UniProt Ensembl InterPro GO_Central
PMID:11266458 PMID:23202584 PMID:30778222
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117
NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:95,869,865...95,905,357
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Atg16l2
autophagy related 16-like 2
NOT|involved_in
ISO
(PMID:22082872) (PMID:11266458)
RGD
PMID:11266458 PMID:22082872
NCBI chr 1:155,687,386...155,703,419
Ensembl chr 1:165,102,936...165,115,473
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Atg2a
autophagy related 2A
involved_in
ISO IEA IBA
(PMID:28561066) GO_REF:0000107 GO_REF:0000033
RGD Ensembl GO_Central
PMID:28561066
GO_REF:0000033 GO_REF:0000107
NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:212,971,844...212,991,528
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Atg2b
autophagy related 2B
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 6:130,286,979...130,357,109
Ensembl chr 6:130,286,986...130,357,109
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Atg3
autophagy related 3
involved_in acts_upstream_of_or_within
ISS ISO IBA IEA
GO_REF:0000024 (PMID:20723759), (PMID:24747438) (PMID:21220506) GO_REF:0000033 GO_REF:0000107 (PMID:33446636)
UniProt RGD GO_Central Ensembl
PMID:20723759 PMID:21220506 PMID:24747438 PMID:33446636
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr11:55,624,914...55,653,249
Ensembl chr11:69,121,952...69,159,280
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Atg4a
autophagy related 4A, cysteine peptidase
involved_in
ISO IEA IBA
(PMID:21177865) GO_REF:0000107 GO_REF:0000033
RGD Ensembl GO_Central
PMID:21177865
GO_REF:0000033 GO_REF:0000107
NCBI chr X:104,665,345...104,765,271
Ensembl chr X:109,453,689...109,553,760
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Atg4b
autophagy related 4B, cysteine peptidase
involved_in acts_upstream_of_or_within
ISO IEA IBA
(PMID:21177865) (PMID:24290141) GO_REF:0000107 (PMID:25578879) GO_REF:0000033
RGD Ensembl GO_Central
PMID:21177865 PMID:24290141 PMID:25578879
GO_REF:0000033 GO_REF:0000107
NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:101,726,782...101,761,622
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Atg4c
autophagy related 4C, cysteine peptidase
involved_in acts_upstream_of_or_within
ISO IEA IBA
(PMID:21177865) (PMID:24290141) GO_REF:0000107 GO_REF:0000033
RGD Ensembl GO_Central
PMID:21177865 PMID:24290141
GO_REF:0000033 GO_REF:0000107
NCBI chr 5:113,867,218...113,935,534
Ensembl chr 5:118,982,918...119,052,695
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Atg4d
autophagy related 4D, cysteine peptidase
involved_in acts_upstream_of_or_within
ISO IBA
(PMID:21177865) (PMID:24290141) GO_REF:0000033
RGD GO_Central
PMID:21177865 PMID:24290141
GO_REF:0000033
NCBI chr 8:19,807,733...19,817,321
Ensembl chr 8:28,083,936...28,093,491
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Atg5
autophagy related 5
involved_in acts_upstream_of_or_within
IMP IEA IBA ISO
GO_REF:0000117 GO_REF:0000033 (PMID:11266458) (PMID:23704209) GO_REF:0000107 (PMID:23202584)
UniProt GO_Central RGD Ensembl
PMID:11266458 PMID:23202584 PMID:23704209 PMID:16420522
GO_REF:0000033 GO_REF:0000107 GO_REF:0000117, RGD:1643189
NCBI chr20:47,798,217...47,889,216
Ensembl chr20:49,380,813...49,471,821
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Atg7
autophagy related 7
involved_in acts_upstream_of_or_within
ISO IBA IEA
(PMID:22170151) (PMID:33446636), (PMID:37943659) GO_REF:0000033 (PMID:20080761) (PMID:23704209) GO_REF:0000107
RGD GO_Central Ensembl
PMID:20080761 PMID:22170151 PMID:23704209 PMID:33446636 PMID:37943659
GO_REF:0000033 GO_REF:0000107
NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:149,391,390...149,598,319
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Atg9a
autophagy related 9A
acts_upstream_of_or_within involved_in
ISO ISS
(PMID:15755735), (PMID:22456507) MGI:4417824 (PMID:22456507), (PMID:23402761) GO_REF:0000024 (PMID:29180427), (PMID:29437695), (PMID:32513819), (PMID:33468622)
RGD UniProt
PMID:15755735 PMID:22456507 PMID:23402761 PMID:29180427 PMID:29437695 PMID:32513819 PMID:33468622 More...
GO_REF:0000024
NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:84,126,071...84,136,666
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Atg9b
autophagy related 9B
acts_upstream_of_or_within
ISO IEA
(PMID:15755735) GO_REF:0000107
RGD Ensembl
PMID:15755735
GO_REF:0000107
NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:11,678,299...11,686,079
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Atm
ATM serine/threonine kinase
acts_upstream_of_or_within
ISO
(PMID:22170151), (PMID:37943659)
RGD
PMID:22170151 PMID:37943659
NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:62,727,291...62,828,629
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Atp2a2
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2
involved_in
ISS ISO IBA
GO_REF:0000024 (PMID:28890335) GO_REF:0000033
UniProt RGD GO_Central
PMID:28890335
GO_REF:0000024 GO_REF:0000033
NCBI chr12:34,072,710...34,122,142
Ensembl chr12:39,733,458...39,782,934
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Bag3
BAG cochaperone 3
involved_in
IMP
PMID:23434281
ARUK-UCL
PMID:23434281
RGD:12793031
NCBI chr 1:183,103,038...183,126,862
Ensembl chr 1:192,475,828...192,557,280
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Becn1
beclin 1
acts_upstream_of_or_within involved_in
IMP ISO IEA IBA ISS
(PMID:33637724) GO_REF:0000107 (PMID:23332761) GO_REF:0000033 (PMID:25891078) GO_REF:0000024
RGD Ensembl GO_Central UniProt
PMID:23332761 PMID:25891078 PMID:33637724 PMID:16420522
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107, RGD:1643189
NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,731,650...86,747,002
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Becn2
beclin 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr13:87,842,980...87,892,410
Ensembl chr13:90,375,186...90,378,488
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Btrc
beta-transducin repeat containing E3 ubiquitin protein ligase
acts_upstream_of_or_within
ISO
(PMID:28890335)
RGD
PMID:28890335
NCBI chr 1:244,210,299...244,380,126
Ensembl chr 1:254,159,124...254,328,357
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Chek2
checkpoint kinase 2
acts_upstream_of_or_within
ISO
(PMID:22170151), (PMID:37943659)
RGD
PMID:22170151 PMID:37943659
NCBI chr12:45,788,823...45,821,382
Ensembl chr12:51,449,140...51,480,667
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Csnk1a1
casein kinase 1, alpha 1
acts_upstream_of_or_within
ISO
(PMID:28890335)
RGD
PMID:28890335
NCBI chr18:55,017,049...55,050,184
Ensembl chr18:57,287,412...57,320,538
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Ctsd
cathepsin D
acts_upstream_of_or_within
ISO IEA
(PMID:15452145) GO_REF:0000107
RGD Ensembl
PMID:15452145
GO_REF:0000107
NCBI chr 1:197,527,467...197,539,343
Ensembl chr 1:206,956,944...206,968,821
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Cul1
cullin 1
acts_upstream_of_or_within
ISO
(PMID:28890335)
RGD
PMID:28890335
NCBI chr 4:76,551,952...76,625,830
Ensembl chr 4:77,551,787...77,621,760
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Deptor
DEP domain containing MTOR-interacting protein
acts_upstream_of_or_within
ISO
(PMID:28890335)
RGD
PMID:28890335
NCBI chr 7:86,514,859...86,668,817
Ensembl chr 7:88,404,620...88,574,041
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Elapor1
endosome-lysosome associated apoptosis and autophagy regulator 1
involved_in
ISO IEA IBA
(PMID:21072319) GO_REF:0000107 GO_REF:0000033
RGD Ensembl GO_Central
PMID:21072319
GO_REF:0000033 GO_REF:0000107
NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:198,777,323...198,856,497
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Emc6
ER membrane protein complex subunit 6
involved_in
ISO IBA
(PMID:23182941) GO_REF:0000033
RGD GO_Central
PMID:23182941
GO_REF:0000033
NCBI chr10:57,794,072...57,795,671
Ensembl chr10:58,292,470...58,298,885
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Ep300
E1A binding protein p300
acts_upstream_of_or_within
ISO
(PMID:28890335)
RGD
PMID:28890335
NCBI chr 7:114,987,857...115,058,652
Ensembl chr 7:114,946,982...115,058,574
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Epm2a
EPM2A glucan phosphatase, laforin
acts_upstream_of_or_within
ISO IEA
MGI:2182627 (PMID:24430976) GO_REF:0000107
RGD Ensembl
PMID:24430976
GO_REF:0000107
NCBI chr 1:5,727,111...5,845,338
Ensembl chr 1:7,547,342...7,669,604
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Gabarap
GABA type A receptor-associated protein
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr10:54,714,777...54,718,099
Ensembl chr10:55,212,075...55,216,154
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Gabarapl1
GABA type A receptor associated protein like 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 4:162,980,309...162,989,452
Ensembl chr 4:164,666,246...164,674,578
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Gabarapl2
GABA type A receptor associated protein like 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr19:39,910,572...39,921,408
Ensembl chr19:56,819,791...56,830,660
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Gabarapl3
GABA type A receptor associated protein like 3
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:89,246,175...89,247,132
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Gabarapl4
gamma-aminobutyric acid receptor associated protein like 4
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr19:55,052,756...55,053,109
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Ifgga2l1
interferon-gamma-inducible GTPase 2 like 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr18:53,761,118...53,770,183
Ensembl chr18:55,957,699...56,046,772
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Ifgga2l2
interferon-gamma-inducible GTPase 2 like 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr18:53,870,838...53,890,135
Ensembl chr18:56,141,275...56,160,722
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Ifgga4l
interferon-gamma-inducible GTPase 4 like
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr18:53,838,426...53,854,858
Ensembl chr18:56,108,872...56,125,302
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Ifi47
interferon gamma inducible protein 47
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr10:33,297,618...33,305,248
Ensembl chr10:33,776,399...33,806,372
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Igtp
interferon gamma induced GTPase
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr10:42,875,047...42,882,866
Ensembl chr10:42,876,790...42,882,858
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Irgm
immunity-related GTPase M
involved_in acts_upstream_of_or_within
ISO IEA IBA
(PMID:16888103) (PMID:28890335) GO_REF:0000107 GO_REF:0000033
RGD Ensembl GO_Central
PMID:16888103 PMID:28890335
GO_REF:0000033 GO_REF:0000107
NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,732,961...33,743,228
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Lamtor1
late endosomal/lysosomal adaptor, MAPK and MTOR activator 1
acts_upstream_of_or_within
ISO
(PMID:28890335)
RGD
PMID:28890335
NCBI chr 1:156,272,116...156,277,687
Ensembl chr 1:165,684,091...165,703,178
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LOC134483037
interferon-inducible GTPase 1-like
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
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Map1lc3a
microtubule-associated protein 1 light chain 3 alpha
involved_in
ISO IEA IBA IDA
(PMID:24290141) GO_REF:0000107 GO_REF:0000033 PMID:11060023
RGD Ensembl GO_Central
PMID:24290141 PMID:11060023
GO_REF:0000033 GO_REF:0000107, RGD:8554284
NCBI chr 3:143,783,024...143,784,670
Ensembl chr 3:164,243,093...164,244,850
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Map1lc3b
microtubule-associated protein 1 light chain 3 beta
involved_in
ISO IBA
(PMID:37943659) GO_REF:0000033
RGD GO_Central
PMID:37943659
GO_REF:0000033
NCBI chr19:49,665,795...49,673,655
Ensembl chr19:66,574,407...66,584,358 Ensembl chr16:66,574,407...66,584,358
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Mapk3
mitogen activated protein kinase 3
acts_upstream_of_or_within
ISO
(PMID:28890335)
RGD
PMID:28890335
NCBI chr 1:181,366,646...181,372,863
Ensembl chr 1:190,797,185...190,803,411
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Mtm1
myotubularin 1
acts_upstream_of
ISO
MGI:2450997 (PMID:23695157)
RGD
PMID:23695157
NCBI chr 6:488,923...506,882
Ensembl chr 6:6,234,922...6,252,961
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Mtor
mechanistic target of rapamycin kinase
acts_upstream_of_or_within
ISO
(PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:28890335), (PMID:30778222), (PMID:33637724)
RGD
PMID:20713597 PMID:23202584 PMID:23392225 PMID:23524951 PMID:25891078 PMID:28890335 PMID:30778222 PMID:33637724 More...
NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:164,167,928...164,277,435
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Nsfl1c
NSFL1 cofactor
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 3:139,978,306...140,002,876
Ensembl chr 3:160,438,708...160,463,228
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Pacs2
phosphofurin acidic cluster sorting protein 2
acts_upstream_of_or_within
ISO IEA
(PMID:23455425) GO_REF:0000107
RGD Ensembl
PMID:23455425
GO_REF:0000107
NCBI chr 6:132,096,992...132,156,702
Ensembl chr 6:137,918,051...137,977,767
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Pik3c3
phosphatidylinositol 3-kinase, catalytic subunit type 3
involved_in acts_upstream_of_or_within
IMP IEA ISO IBA
GO_REF:0000117 GO_REF:0000107 (PMID:24098492) GO_REF:0000033 (PMID:33637724)
UniProt Ensembl RGD GO_Central
PMID:24098492 PMID:33637724 PMID:12453151
GO_REF:0000033 GO_REF:0000107 GO_REF:0000117, RGD:2303129
NCBI chr18:21,845,282...21,934,387
Ensembl chr18:22,119,792...22,203,539
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Prkaa1
protein kinase AMP-activated catalytic subunit alpha 1
acts_upstream_of_or_within
ISO
(PMID:28890335)
RGD
PMID:28890335
NCBI chr 2:54,240,298...54,275,978
Ensembl chr 2:55,967,351...56,003,450
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Psen1
presenilin 1
acts_upstream_of_or_within
ISO IEA
MGI:2149116 (PMID:15452145) GO_REF:0000107
RGD Ensembl
PMID:15452145
GO_REF:0000107
NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:109,060,352...109,106,189
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Rab19
RAB19, member RAS oncogene family
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 4:68,157,159...68,166,889
Ensembl chr 4:69,123,924...69,134,383
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Rab1a
RAB1A, member RAS oncogene family
involved_in
ISO IBA ISS
(PMID:22939626) GO_REF:0000033 GO_REF:0000024
RGD GO_Central UniProt
PMID:22939626
GO_REF:0000024 GO_REF:0000033
NCBI chr14:94,422,219...94,448,799
Ensembl chr14:98,623,635...98,661,582
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Rab1b
RAB1B, member RAS oncogene family
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:211,835,073...211,843,337 Ensembl chr X:211,835,073...211,843,337
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Rab23
RAB23, member RAS oncogene family
involved_in
ISO IEA IBA
(PMID:22452336) GO_REF:0000107 GO_REF:0000033
RGD Ensembl GO_Central
PMID:22452336
GO_REF:0000033 GO_REF:0000107
NCBI chr 9:43,440,047...43,463,327
Ensembl chr 9:43,440,273...43,463,325
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Rab33a
RAB33A, member RAS oncogene family
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr X:127,694,219...127,706,378
Ensembl chr X:132,572,148...132,584,254
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Rab33b
RAB33B, member RAS oncogene family
involved_in acts_upstream_of_or_within
ISO IBA IEA
(PMID:18448665) (PMID:23202584), (PMID:30778222) GO_REF:0000033 GO_REF:0000107
RGD GO_Central Ensembl
PMID:18448665 PMID:23202584 PMID:30778222
GO_REF:0000033 GO_REF:0000107
NCBI chr 2:135,528,116...135,538,719
Ensembl chr 2:137,678,978...137,689,581
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Rab43
RAB43, member RAS oncogene family
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 4:120,249,650...120,269,174
Ensembl chr 4:121,806,992...121,854,561
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Rab7a
RAB7A, member RAS oncogene family
involved_in
ISO IEA
(PMID:19956673) GO_REF:0000107
RGD Ensembl
PMID:19956673
GO_REF:0000107
NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:121,983,938...122,064,185
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Rb1cc1
RB1-inducible coiled-coil 1
involved_in acts_upstream_of_or_within
ISO IEA IBA
(PMID:19225151), (PMID:28890335) (PMID:23202584), (PMID:30778222) GO_REF:0000117 GO_REF:0000107 GO_REF:0000002 (PMID:19225151), (PMID:19258318) GO_REF:0000033 (PMID:23392225)
RGD UniProt Ensembl InterPro GO_Central
PMID:19225151 PMID:19258318 PMID:23202584 PMID:23392225 PMID:28890335 PMID:30778222 More...
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117
NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:17,948,522...18,012,434
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Rbx1
ring-box 1
acts_upstream_of_or_within
ISO
(PMID:28890335)
RGD
PMID:28890335
NCBI chr 7:112,976,863...113,001,051
Ensembl chr 7:114,870,972...114,881,191
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RGD1309362
similar to interferon-inducible GTPase
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
Ensembl chr18:55,943,264...55,994,435
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RGD1559575
similar to novel protein
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr10:33,252,146...33,276,364
Ensembl chr10:33,753,267...33,776,789
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Rheb
Ras homolog, mTORC1 binding
acts_upstream_of_or_within
ISO
(PMID:28890335)
RGD
PMID:28890335
NCBI chr 4:10,278,970...10,320,160
Ensembl chr 4:11,012,643...11,053,931
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Rps6kb1
ribosomal protein S6 kinase B1
acts_upstream_of_or_within
ISO
(PMID:28890335)
RGD
PMID:28890335
NCBI chr10:71,323,777...71,367,908
Ensembl chr10:71,815,614...71,865,238
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Rptor
regulatory associated protein of MTOR, complex 1
acts_upstream_of_or_within
ISO
(PMID:28890335)
RGD
PMID:28890335
NCBI chr10:104,878,487...105,176,986
Ensembl chr10:105,376,943...105,675,413
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Rraga
Ras-related GTP binding A
acts_upstream_of_or_within
ISO
(PMID:28890335)
RGD
PMID:28890335
NCBI chr 5:101,113,341...101,114,936
Ensembl chr 5:106,158,853...106,160,504
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Rragc
Ras-related GTP binding C
acts_upstream_of_or_within
ISO
(PMID:28890335)
RGD
PMID:28890335
NCBI chr 5:136,148,239...136,167,773
Ensembl chr 5:141,433,040...141,452,548
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Rufy4
RUN and FYVE domain containing 4
involved_in
ISO IEA IBA
(PMID:26416964) GO_REF:0000107 GO_REF:0000033
RGD Ensembl GO_Central
PMID:26416964
GO_REF:0000033 GO_REF:0000107
NCBI chr 9:75,702,937...75,727,719
Ensembl chr 9:83,154,445...83,172,897
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Setd2
SET domain containing 2, histone lysine methyltransferase
acts_upstream_of_or_within
ISO
(PMID:28890335)
RGD
PMID:28890335
NCBI chr 8:119,390,207...119,475,863
Ensembl chr 8:119,390,207...119,475,863
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Sting1
stimulator of interferon response cGAMP interactor 1
involved_in acts_upstream_of_or_within
ISS ISO IEA IBA
GO_REF:0000024 (PMID:23202584) GO_REF:0000107 (PMID:30568238) GO_REF:0000033 (PMID:30568238), (PMID:30842662), (PMID:37535724)
UniProt RGD Ensembl GO_Central
PMID:23202584 PMID:30568238 PMID:30842662 PMID:37535724
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr18:27,606,196...27,612,544
Ensembl chr18:27,606,196...27,611,947
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Stx12
syntaxin 12
involved_in
ISO IBA
(PMID:24095276) GO_REF:0000033
RGD GO_Central
PMID:24095276
GO_REF:0000033
NCBI chr 5:145,062,978...145,092,423
Ensembl chr 5:150,334,836...150,376,346
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Syk
spleen associated tyrosine kinase
acts_upstream_of_or_within
ISO
(PMID:28890335)
RGD
PMID:28890335
NCBI chr17:12,604,615...12,678,437
Ensembl chr17:12,756,493...12,813,278
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Synpo2
synaptopodin 2
involved_in
IMP
PMID:23434281
UniProt
PMID:23434281
RGD:12793031
NCBI chr 2:211,217,099...211,371,267
Ensembl chr 2:213,900,868...214,055,844
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Tcirg1
T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3
acts_upstream_of_or_within
ISO IEA
(PMID:23908015) GO_REF:0000107
RGD Ensembl
PMID:23908015
GO_REF:0000107
NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:210,556,270...210,568,033
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Tmem41b
transmembrane protein 41B
involved_in
ISS IEA IBA ISO
GO_REF:0000024 GO_REF:0000107 GO_REF:0000033 (PMID:30093494), (PMID:30126924), (PMID:30933966)
UniProt Ensembl GO_Central RGD
PMID:30093494 PMID:30126924 PMID:30933966
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr 1:164,012,585...164,026,967
Ensembl chr 1:173,447,367...173,461,597
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Tp53inp1
tumor protein p53 inducible nuclear protein 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 5:24,253,986...24,272,250
Ensembl chr 5:29,051,264...29,069,484
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Tp53inp2
tumor protein p53 inducible nuclear protein 2
involved_in
ISO IBA IEA ISS
(PMID:19056683) GO_REF:0000033 GO_REF:0000107 GO_REF:0000024
RGD GO_Central Ensembl UniProt
PMID:19056683
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr 3:143,881,427...143,890,104
Ensembl chr 3:164,343,205...164,350,225
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Traf6
TNF receptor associated factor 6
involved_in acts_upstream_of_or_within
ISO
(PMID:23524951) (PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:28890335), (PMID:30778222), (PMID:33637724)
RGD
PMID:20713597 PMID:23202584 PMID:23392225 PMID:23524951 PMID:25891078 PMID:28890335 PMID:30778222 PMID:33637724 More...
NCBI chr 3:108,418,537...108,443,330
Ensembl chr 3:108,418,513...108,443,328
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Trim21
tripartite motif-containing 21
acts_upstream_of_or_within
ISO
(PMID:28890335)
RGD
PMID:28890335
NCBI chr 1:156,964,896...156,987,504
Ensembl chr 1:166,376,829...166,399,449
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Trim32
tripartite motif-containing 32
involved_in acts_upstream_of_or_within
ISO
(PMID:37943659) (PMID:22170151), (PMID:37943659)
RGD
PMID:22170151 PMID:37943659
NCBI chr 5:79,005,139...79,016,615
Ensembl chr 5:84,014,803...84,042,748
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Ube3c
ubiquitin protein ligase E3C
acts_upstream_of_or_within
ISO
(PMID:33637724)
RGD
PMID:33637724
NCBI chr 4:5,648,932...5,749,922
Ensembl chr 4:6,323,831...6,424,845
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Ubqln1
ubiquilin 1
involved_in
ISO IBA IEA
(PMID:20529957) GO_REF:0000033 GO_REF:0000107
RGD GO_Central Ensembl
PMID:20529957
GO_REF:0000033 GO_REF:0000107
NCBI chr17:6,439,002...6,477,096
Ensembl chr17:6,444,124...6,482,499
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Ubqln2
ubiquilin 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr X:17,853,086...17,856,505
Ensembl chr X:21,229,197...21,232,268
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Ubxn2a
UBX domain protein 2A
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 6:27,884,364...27,912,767
Ensembl chr 6:33,603,804...33,632,202 Ensembl chr20:33,603,804...33,632,202
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Ubxn2b
UBX domain protein 2B
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 5:19,303,634...19,333,181
Ensembl chr 5:24,101,209...24,129,199
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Ulk1
unc-51 like autophagy activating kinase 1
involved_in acts_upstream_of_or_within
ISO IEA IBA
(PMID:19225151), (PMID:28890335) (PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:30778222), (PMID:33637724) GO_REF:0000107 GO_REF:0000033 (PMID:19225151), (PMID:19258318)
RGD Ensembl GO_Central
PMID:19225151 PMID:19258318 PMID:20713597 PMID:23202584 PMID:23392225 PMID:23524951 PMID:25891078 PMID:28890335 PMID:30778222 PMID:33637724 More...
GO_REF:0000033 GO_REF:0000107
NCBI chr12:45,851,710...45,877,966
Ensembl chr12:51,511,492...51,537,746
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Ulk2
unc-51 like autophagy activating kinase 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,951,038...47,029,844
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Ulk3
unc-51 like kinase 3
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 8:57,992,396...58,000,220
Ensembl chr 8:66,888,788...66,895,379
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Usp7
ubiquitin specific peptidase 7
acts_upstream_of_or_within
ISO
(PMID:28890335)
RGD
PMID:28890335
NCBI chr10:6,880,684...6,925,355
Ensembl chr10:7,367,604...7,432,013
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Vmp1
vacuole membrane protein 1
involved_in
ISO IBA IEA ISS
(PMID:28890335), (PMID:30093494), (PMID:30933966) GO_REF:0000033 GO_REF:0000107 GO_REF:0000024
RGD GO_Central Ensembl UniProt
PMID:28890335 PMID:30093494 PMID:30933966
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr10:71,405,058...71,505,045
Ensembl chr10:71,903,227...72,002,319
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Wdr45
WD repeat domain 45
involved_in
ISO IEA ISS
(PMID:28561066) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:28561066
GO_REF:0000024 GO_REF:0000107
NCBI chr X:17,448,195...17,454,117
Ensembl chr X:17,448,207...17,454,117
G
Wdr45b
WD repeat domain 45B
involved_in
ISO IEA
(PMID:28561066) GO_REF:0000107
RGD Ensembl
PMID:28561066
GO_REF:0000107
NCBI chr10:106,597,558...106,629,488
Ensembl chr10:107,097,755...107,127,831
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Wipi1
WD repeat domain, phosphoinositide interacting 1
involved_in
ISO IEA
(PMID:28561066) GO_REF:0000107
RGD Ensembl
PMID:28561066
GO_REF:0000107
NCBI chr10:94,542,946...94,580,174
Ensembl chr10:95,042,441...95,079,293
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Wipi2
WD repeat domain, phosphoinositide interacting 2
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:20505359), (PMID:28561066), (PMID:28890335)
UniProt Ensembl RGD
PMID:20505359 PMID:28561066 PMID:28890335
GO_REF:0000024 GO_REF:0000107
NCBI chr12:11,911,369...11,939,799
Ensembl chr12:17,024,878...17,071,406
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Zranb1
zinc finger RANBP2-type containing 1
acts_upstream_of_or_within
ISO
(PMID:33637724)
RGD
PMID:33637724
NCBI chr 1:187,725,354...187,780,129
Ensembl chr 1:197,155,459...197,209,384
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Smurf1
SMAD specific E3 ubiquitin protein ligase 1
involved_in
ISO IEA
(PMID:22020285) GO_REF:0000107
RGD Ensembl
PMID:22020285
GO_REF:0000107
NCBI chr12:9,635,009...9,726,520
Ensembl chr12:14,749,043...14,840,273
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Becn1
beclin 1
acts_upstream_of_or_within
ISO IEA
MGI:2683833 (PMID:27994061) GO_REF:0000107
RGD Ensembl
PMID:27994061
GO_REF:0000107
NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,731,650...86,747,002
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Ehmt2
euchromatic histone lysine methyltransferase 2
acts_upstream_of_or_within
ISO
(PMID:23918802)
RGD
PMID:23918802
NCBI chr20:3,924,263...3,941,238
Ensembl chr20:3,924,263...3,941,384
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Fez1
fasciculation and elongation protein zeta 1
involved_in
ISO IEA ISS
(PMID:25495476) GO_REF:0000107 GO_REF:0000024
RGD Ensembl GO_Central
PMID:25495476
GO_REF:0000024 GO_REF:0000107
NCBI chr 8:36,544,462...36,589,684
Ensembl chr 8:44,733,300...44,784,097
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Fez2
fasciculation and elongation protein zeta 2
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:25495476)
GO_Central Ensembl RGD
PMID:25495476
GO_REF:0000024 GO_REF:0000107
NCBI chr 6:16,654,572...16,694,628
Ensembl chr 6:22,406,632...22,447,041
G
Lrrk2
leucine-rich repeat kinase 2
involved_in
ISO IEA
(PMID:23916833) GO_REF:0000107
RGD Ensembl
PMID:23916833
GO_REF:0000107
NCBI chr 7:122,826,696...122,987,711
Ensembl chr 7:124,706,080...124,867,239
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Mtm1
myotubularin 1
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:2450997 (PMID:23695157)
GO_Central RGD
PMID:23695157
GO_REF:0000033
NCBI chr 6:488,923...506,882
Ensembl chr 6:6,234,922...6,252,961
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Nupr1
nuclear protein 1, transcriptional regulator
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:20181828)
UniProt Ensembl RGD
PMID:20181828
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:181,213,292...181,215,327
Ensembl chr 1:190,643,867...190,645,901
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Phf23
PHD finger protein 23
involved_in
ISO IBA IEA ISS
(PMID:25484098) GO_REF:0000033 GO_REF:0000107 GO_REF:0000024
RGD GO_Central Ensembl
PMID:25484098
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr10:54,718,663...54,722,784
Ensembl chr10:55,217,351...55,221,471
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Pink1
PTEN induced kinase 1
involved_in
ISO IEA
(PMID:19279012) GO_REF:0000107
RGD Ensembl
PMID:19279012
GO_REF:0000107
NCBI chr 5:150,530,523...150,542,635
Ensembl chr 5:155,813,838...155,825,950
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Scfd1
sec1 family domain containing 1
involved_in
ISO IEA
(PMID:21242315) GO_REF:0000107
RGD Ensembl
PMID:21242315
GO_REF:0000107
NCBI chr 6:68,795,810...68,874,076
Ensembl chr 6:74,531,276...74,633,750
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Sec22b
SEC22 homolog B, vesicle trafficking protein
involved_in
ISO
(PMID:21242315)
RGD
PMID:21242315
NCBI chr 2:185,500,029...185,520,811
Ensembl chr 2:188,188,751...188,211,600
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Smcr8
SMCR8-C9orf72 complex subunit
involved_in
ISO IEA
(PMID:28195531) GO_REF:0000107
RGD Ensembl
PMID:28195531
GO_REF:0000107
NCBI chr10:45,457,962...45,465,101
Ensembl chr10:45,957,104...45,968,389
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Tmem39a
transmembrane protein 39a
involved_in
ISO IEA IBA ISS
(PMID:31806350) GO_REF:0000107 GO_REF:0000033 GO_REF:0000024
RGD Ensembl GO_Central UniProt
PMID:31806350
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr11:62,160,631...62,189,964
Ensembl chr11:75,666,154...75,695,486
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Atg2a
autophagy related 2A
involved_in
ISO IEA
(PMID:30952800), (PMID:31271352) GO_REF:0000107
RGD Ensembl
PMID:30952800 PMID:31271352
GO_REF:0000107
NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:212,971,844...212,991,528
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Atg7
autophagy related 7
IMP
RGD
PMID:33372336
RGD:407571673
NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:149,391,390...149,598,319
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Atm
ATM serine/threonine kinase
acts_upstream_of_or_within
ISO
(PMID:37943659)
RGD
PMID:37943659
NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:62,727,291...62,828,629
G
Becn1
beclin 1
IMP
RGD
PMID:25561470
RGD:11561937
NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,731,650...86,747,002
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Chek2
checkpoint kinase 2
acts_upstream_of_or_within
ISO
(PMID:37943659)
RGD
PMID:37943659
NCBI chr12:45,788,823...45,821,382
Ensembl chr12:51,449,140...51,480,667
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Elapor1
endosome-lysosome associated apoptosis and autophagy regulator 1
involved_in
ISO IEA
(PMID:21072319) GO_REF:0000107
RGD Ensembl
PMID:21072319
GO_REF:0000107
NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:198,777,323...198,856,497
G
Lrsam1
leucine rich repeat and sterile alpha motif containing 1
involved_in
ISO IEA
(PMID:25484098) GO_REF:0000107
RGD Ensembl
PMID:25484098
GO_REF:0000107
NCBI chr 3:16,223,367...16,264,261
Ensembl chr 3:36,621,042...36,661,825
G
Moap1
modulator of apoptosis 1
involved_in
ISO
(PMID:33783314)
RGD
PMID:33783314
NCBI chr 6:121,882,565...121,884,500
Ensembl chr 6:127,613,488...127,669,324
G
Pip4k2a
phosphatidylinositol-5-phosphate 4-kinase type 2 alpha
involved_in
ISO IEA
(PMID:25578879) GO_REF:0000107
RGD Ensembl
PMID:25578879
GO_REF:0000107
NCBI chr17:81,496,669...81,668,180
Ensembl chr17:86,405,081...86,576,430
G
Pip4k2b
phosphatidylinositol-5-phosphate 4-kinase type 2 beta
involved_in
ISO IEA
(PMID:25578879) GO_REF:0000107
RGD Ensembl
PMID:25578879
GO_REF:0000107
NCBI chr10:82,706,016...82,734,938
Ensembl chr10:83,197,287...83,231,292
G
Pip4k2c
phosphatidylinositol-5-phosphate 4-kinase type 2 gamma
involved_in
ISO IEA
(PMID:25578879) GO_REF:0000107
RGD Ensembl
PMID:25578879
GO_REF:0000107
NCBI chr 7:63,020,004...63,035,086
Ensembl chr 7:64,905,328...64,920,373
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Rab3gap1
RAB3 GTPase activating protein catalytic subunit 1
involved_in
ISO ISS IEA IBA
(PMID:25495476) GO_REF:0000024 GO_REF:0000107 GO_REF:0000033
RGD GO_Central Ensembl
PMID:25495476
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr13:39,355,698...39,429,154
Ensembl chr13:41,908,051...41,981,611
G
Rab3gap2
RAB3 GTPase activating non-catalytic protein subunit 2
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:25495476) GO_REF:0000107
GO_Central RGD Ensembl
PMID:25495476
GO_REF:0000024 GO_REF:0000107
NCBI chr13:99,288,984...99,362,817
Ensembl chr13:99,288,647...99,361,053
G
Ralb
RAS like proto-oncogene B
involved_in
ISO IEA
(PMID:24056301) GO_REF:0000107
RGD Ensembl
PMID:24056301
GO_REF:0000107
NCBI chr13:30,588,036...30,624,199
Ensembl chr13:33,140,835...33,176,998
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Sh3glb1
SH3 domain -containing GRB2-like endophilin B1
involved_in
ISO IEA
(PMID:21068542) GO_REF:0000107
RGD Ensembl
PMID:21068542
GO_REF:0000107
NCBI chr 2:233,750,838...233,784,817
Ensembl chr 2:236,410,436...236,445,140
G
Snx18
sorting nexin 18
involved_in
ISO IEA
(PMID:29437695) GO_REF:0000107
RGD Ensembl
PMID:29437695
GO_REF:0000107
NCBI chr 2:45,232,325...45,258,345
Ensembl chr 2:46,965,498...46,991,516
G
Snx30
sorting nexin family member 30
involved_in
ISO IEA
(PMID:32513819) GO_REF:0000107
RGD Ensembl
PMID:32513819
GO_REF:0000107
NCBI chr 5:74,683,902...74,813,013
Ensembl chr 5:79,478,912...79,607,052
G
Snx4
sorting nexin 4
involved_in
ISO IBA IEA
(PMID:32513819), (PMID:33468622) GO_REF:0000033 GO_REF:0000107
RGD GO_Central Ensembl
PMID:32513819 PMID:33468622
GO_REF:0000033 GO_REF:0000107
NCBI chr11:67,460,872...67,518,143
Ensembl chr11:80,965,967...81,028,448
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Snx7
sorting nexin 7
involved_in
ISO IEA
(PMID:32513819) GO_REF:0000107
RGD Ensembl
PMID:32513819
GO_REF:0000107
NCBI chr 2:205,843,164...205,927,737
Ensembl chr 2:208,528,049...208,613,075
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Trim32
tripartite motif-containing 32
involved_in
ISO
(PMID:37943659)
RGD
PMID:37943659
NCBI chr 5:79,005,139...79,016,615
Ensembl chr 5:84,014,803...84,042,748
G
Ulk1
unc-51 like autophagy activating kinase 1
IMP
RGD
PMID:23448468
RGD:13208863
NCBI chr12:45,851,710...45,877,966
Ensembl chr12:51,511,492...51,537,746
G
Usp33
ubiquitin specific peptidase 33
involved_in
ISO
(PMID:24056301)
RGD
PMID:24056301
NCBI chr 2:241,283,209...241,328,479
Ensembl chr 2:243,943,175...243,988,424
G
Wdr45
WD repeat domain 45
involved_in
ISO ISS IEA
(PMID:31271352) GO_REF:0000024 GO_REF:0000107
RGD UniProt Ensembl
PMID:31271352
GO_REF:0000024 GO_REF:0000107
NCBI chr X:17,448,195...17,454,117
Ensembl chr X:17,448,207...17,454,117
G
Wipi1
WD repeat domain, phosphoinositide interacting 1
involved_in
ISO IEA
(PMID:31271352) GO_REF:0000107
RGD Ensembl
PMID:31271352
GO_REF:0000107
NCBI chr10:94,542,946...94,580,174
Ensembl chr10:95,042,441...95,079,293
G
Elavl1
ELAV like RNA binding protein 1
IMP
RGD
PMID:33372336
RGD:407571673
NCBI chr12:2,640,936...2,684,787
Ensembl chr12:7,441,699...7,482,631
G
Atg16l1
autophagy related 16-like 1
acts_upstream_of_or_within
ISO
(PMID:24954904)
RGD
PMID:24954904
NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:95,869,865...95,905,357
G
Atg5
autophagy related 5
acts_upstream_of_or_within
ISO
(PMID:23918802)
RGD
PMID:23918802
NCBI chr20:47,798,217...47,889,216
Ensembl chr20:49,380,813...49,471,821
G
Irgm
immunity-related GTPase M
involved_in
ISO
(PMID:28389568)
RGD
PMID:28389568
NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,732,961...33,743,228
G
Wipi2
WD repeat domain, phosphoinositide interacting 2
acts_upstream_of_or_within
ISO
(PMID:24954904)
RGD
PMID:24954904
NCBI chr12:11,911,369...11,939,799
Ensembl chr12:17,024,878...17,071,406
G
Arfip2
ARF interacting protein 2
involved_in
ISO IEA ISS
(PMID:33773106) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:33773106
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:159,974,255...159,980,398
Ensembl chr 1:169,387,485...169,392,166
G
Atg13
autophagy related 13
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:98,101,552...98,136,743
G
Atg16l1
autophagy related 16-like 1
acts_upstream_of_or_within involved_in
ISO IEA
PR:Q80W47 (PMID:24954904) (PMID:32960676) GO_REF:0000107
RGD Ensembl
PMID:24954904 PMID:32960676
GO_REF:0000107
NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:95,869,865...95,905,357
G
Atg4b
autophagy related 4B, cysteine peptidase
involved_in
ISO IEA
(PMID:33773106) GO_REF:0000107
RGD Ensembl
PMID:33773106
GO_REF:0000107
NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:101,726,782...101,761,622
G
Atg4d
autophagy related 4D, cysteine peptidase
involved_in
ISO IEA
(PMID:33773106) GO_REF:0000107
RGD Ensembl
PMID:33773106
GO_REF:0000107
NCBI chr 8:19,807,733...19,817,321
Ensembl chr 8:28,083,936...28,093,491
G
Atg9a
autophagy related 9A
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:84,126,071...84,136,666
G
Atg9b
autophagy related 9B
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:11,678,299...11,686,079
G
Lrba
LPS responsive beige-like anchor protein
involved_in
ISO
(PMID:33773106)
RGD
PMID:33773106
NCBI chr 2:171,623,668...172,202,576
Ensembl chr 2:173,921,747...174,500,527
G
Mfn2
mitofusin 2
acts_upstream_of_or_within
ISO IEA
(PMID:23455425) GO_REF:0000107
RGD Ensembl
PMID:23455425
GO_REF:0000107
NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:163,587,463...163,618,495
G
Pacs2
phosphofurin acidic cluster sorting protein 2
acts_upstream_of_or_within
ISO IEA
(PMID:23455425) GO_REF:0000107
RGD Ensembl
PMID:23455425
GO_REF:0000107
NCBI chr 6:132,096,992...132,156,702
Ensembl chr 6:137,918,051...137,977,767
G
Pik3c3
phosphatidylinositol 3-kinase, catalytic subunit type 3
acts_upstream_of_or_within
ISO IEA
(PMID:24098492) GO_REF:0000107
RGD Ensembl
PMID:24098492
GO_REF:0000107
NCBI chr18:21,845,282...21,934,387
Ensembl chr18:22,119,792...22,203,539
G
Rab33b
RAB33B, member RAS oncogene family
involved_in
IEA ISO
GO_REF:0000107 (PMID:32960676)
Ensembl RGD
PMID:32960676
GO_REF:0000107
NCBI chr 2:135,528,116...135,538,719
Ensembl chr 2:137,678,978...137,689,581
G
Stx17
syntaxin 17
acts_upstream_of_or_within
ISO IEA
(PMID:23455425) GO_REF:0000107
RGD Ensembl
PMID:23455425
GO_REF:0000107
NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:67,241,727...67,302,218
G
Wdr45
WD repeat domain 45
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr X:17,448,195...17,454,117
Ensembl chr X:17,448,207...17,454,117
G
Wdr45b
WD repeat domain 45B
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr10:106,597,558...106,629,488
Ensembl chr10:107,097,755...107,127,831
G
Wipi1
WD repeat domain, phosphoinositide interacting 1
involved_in
IBA IEA
GO_REF:0000033 GO_REF:0000117
GO_Central UniProt
GO_REF:0000033 GO_REF:0000117
NCBI chr10:94,542,946...94,580,174
Ensembl chr10:95,042,441...95,079,293
G
Wipi2
WD repeat domain, phosphoinositide interacting 2
involved_in acts_upstream_of_or_within
ISO IEA IBA ISS
(PMID:28561066) GO_REF:0000117 GO_REF:0000107 PR:Q8C0J2 (PMID:24954904) GO_REF:0000033 GO_REF:0000024
RGD UniProt Ensembl GO_Central
PMID:24954904 PMID:28561066
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117
NCBI chr12:11,911,369...11,939,799
Ensembl chr12:17,024,878...17,071,406
G
Atm
ATM serine/threonine kinase
acts_upstream_of_or_within
ISO
(PMID:37943659)
RGD
PMID:37943659
NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:62,727,291...62,828,629
G
Chek2
checkpoint kinase 2
involved_in
ISO IEA
(PMID:37943659) GO_REF:0000107
RGD Ensembl
PMID:37943659
GO_REF:0000107
NCBI chr12:45,788,823...45,821,382
Ensembl chr12:51,449,140...51,480,667
G
Efnb1
ephrin B1
acts_upstream_of_positive_effect
ISO IEA
(PMID:33280498) GO_REF:0000107
RGD Ensembl
PMID:33280498
GO_REF:0000107
NCBI chr X:64,257,351...64,270,158
Ensembl chr X:68,297,492...68,349,546
G
Ephb2
Eph receptor B2
acts_upstream_of_positive_effect
ISO IEA
(PMID:33280498) GO_REF:0000107
RGD Ensembl
PMID:33280498
GO_REF:0000107
NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:154,179,065...154,360,615
G
Ift20
intraflagellar transport 20
involved_in
ISO IEA
(PMID:24089209) GO_REF:0000107
RGD Ensembl
PMID:24089209
GO_REF:0000107
NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,930,681...63,936,172
G
Ift88
intraflagellar transport 88
involved_in
ISO
(PMID:24089209)
RGD
PMID:24089209
NCBI chr15:35,685,678...35,786,875
Ensembl chr15:35,688,927...35,781,634
G
Mtmr3
myotubularin related protein 3
involved_in
IEA ISO
GO_REF:0000107 (PMID:25578879)
Ensembl RGD
PMID:25578879
GO_REF:0000107
NCBI chr14:79,340,523...79,460,947
Ensembl chr14:83,564,065...83,684,473
G
Mtor
mechanistic target of rapamycin kinase
involved_in
ISO IEA
(PMID:23524951) GO_REF:0000107
RGD Ensembl
PMID:23524951
GO_REF:0000107
NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:164,167,928...164,277,435
G
Pikfyve
phosphoinositide kinase, FYVE-type zinc finger containing
involved_in
ISO IEA
(PMID:25578879) GO_REF:0000107
RGD Ensembl
PMID:25578879
GO_REF:0000107
NCBI chr 9:74,057,488...74,151,610
Ensembl chr 9:74,057,514...74,151,610
G
Rab1b
RAB1B, member RAS oncogene family
involved_in
ISO
(PMID:20545908)
RGD
PMID:20545908
NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:211,835,073...211,843,337 Ensembl chr X:211,835,073...211,843,337
G
RGD1359108
similar to RIKEN cDNA 3110043O21
involved_in
ISO IEA ISS
(PMID:27334615) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:27334615
GO_REF:0000024 GO_REF:0000107
NCBI chr 5:49,766,340...49,791,434
Ensembl chr 5:54,562,570...54,587,637
G
Rnf186
ring finger protein 186
acts_upstream_of_positive_effect
ISO IEA
(PMID:33280498) GO_REF:0000107
RGD Ensembl
PMID:33280498
GO_REF:0000107
NCBI chr 5:151,210,492...151,211,716
Ensembl chr 5:156,493,752...156,494,978
G
Rnf5
ring finger protein 5
acts_upstream_of_or_within
ISO IEA
MGI:3775796 (PMID:23093945) GO_REF:0000107
RGD Ensembl
PMID:23093945
GO_REF:0000107
NCBI chr20:4,145,539...4,147,985
Ensembl chr20:4,150,138...4,152,591
G
Tbc1d12
TBC1 domain family, member 12
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:236,603,597...236,685,859
Ensembl chr 1:246,015,994...246,098,241
G
Tbc1d14
TBC1 domain family, member 14
involved_in
ISO IBA IEA
(PMID:22613832) GO_REF:0000033 GO_REF:0000107
RGD GO_Central Ensembl
PMID:22613832
GO_REF:0000033 GO_REF:0000107
NCBI chr14:74,172,652...74,272,182
Ensembl chr14:78,397,355...78,496,865
G
Ubqln2
ubiquilin 2
involved_in
ISO
(PMID:20529957)
RGD
PMID:20529957
NCBI chr X:17,853,086...17,856,505
Ensembl chr X:21,229,197...21,232,268
G
Atp13a2
ATPase cation transporting 13A2
involved_in
IMP IEA IBA ISO
GO_REF:0000107 GO_REF:0000033 (PMID:22186024)
Ensembl GO_Central RGD
PMID:22186024 PMID:22186024
GO_REF:0000033 GO_REF:0000107, RGD:13442482
NCBI chr 5:153,292,722...153,312,143
Ensembl chr 5:158,575,749...158,595,156
G
Cln3
CLN3 lysosomal/endosomal transmembrane protein, battenin
involved_in
ISO IEA
(PMID:25878248) GO_REF:0000107
RGD Ensembl
PMID:25878248
GO_REF:0000107
NCBI chr 1:190,586,649...190,600,034
Ensembl chr 1:190,586,650...190,597,929
G
Dnajc16
DnaJ heat shock protein family (Hsp40) member C16
involved_in
ISS ISO
GO_REF:0000024 (PMID:32492081)
UniProt RGD
PMID:32492081
GO_REF:0000024
NCBI chr 5:154,073,372...154,106,246
Ensembl chr 5:159,361,314...159,389,298
G
Bnip3
BCL2 interacting protein 3
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr 1:193,708,164...193,725,348
Ensembl chr 1:203,137,778...203,154,962
G
Irgq
immunity-related GTPase Q
involved_in
ISO
(PMID:39481378)
RGD
PMID:39481378
NCBI chr 1:80,123,925...80,131,881
Ensembl chr 1:89,239,205...89,259,799
G
Retreg1
reticulophagy regulator 1
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr 2:76,335,609...76,474,817
Ensembl chr 2:78,066,031...78,225,356
G
Retreg2
reticulophagy regulator family member 2
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr 9:84,088,935...84,095,072
Ensembl chr 9:84,088,964...84,094,837
G
Retreg3
reticulophagy regulator family member 3
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr10:86,028,767...86,052,575
Ensembl chr10:86,529,055...86,552,990
G
Smurf1
SMAD specific E3 ubiquitin protein ligase 1
involved_in
ISO IEA
(PMID:22020285) GO_REF:0000107
RGD Ensembl
PMID:22020285
GO_REF:0000107
NCBI chr12:9,635,009...9,726,520
Ensembl chr12:14,749,043...14,840,273
G
Stbd1
starch binding domain 1
involved_in
ISO IEA
MGI:6356543 (PMID:20810658), (PMID:27358407) GO_REF:0000107
RGD Ensembl
PMID:20810658 PMID:27358407
GO_REF:0000107
NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,754,644...15,761,659
G
Tom1
target of myb1 membrane trafficking protein
involved_in
ISO IEA
(PMID:23023224) GO_REF:0000107
RGD Ensembl
PMID:23023224
GO_REF:0000107
NCBI chr19:13,405,482...13,440,384
Ensembl chr19:13,411,157...13,446,110
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