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ONTOLOGY REPORT - ANNOTATIONS

Term:autophagosome organization
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Accession:GO:1905037 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an autophagosome.
Synonyms:exact_synonym: autophagic vacuole organization
 related_synonym: initial autophagic vacuole organization


show annotations for term's descendants           Sort by:
autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:22186024) RGD PMID:22186024 NCBI chr 5:153,292,722...153,312,143
Ensembl chr 5:153,292,751...153,312,139 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (MGI:5501380|PMID:23707074) RGD PMID:23707074 MGI:5501380 NCBI chr 2:174,609,437...174,615,457
Ensembl chr 2:174,609,403...174,618,263 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha acts_upstream_of_or_within ISO MGI:2685045 (PMID:24098492) RGD PMID:24098492 NCBI chr 1:170,577,942...170,684,353
Ensembl chr 1:170,577,942...170,683,472 		JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta acts_upstream_of_or_within ISO MGI:1203729 (PMID:24098492) RGD PMID:24098492 NCBI chr13:44,494,673...44,555,663
Ensembl chr13:44,495,050...44,555,612 		JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:25365221) RGD PMID:25365221 NCBI chr 3:109,007,658...109,072,904
Ensembl chr 3:109,008,135...109,072,911 		JBrowse link
G Zfyve26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25365221)
GO_REF:0000107		 RGD
Ensembl		 PMID:25365221 GO_REF:0000107 NCBI chr 6:98,031,874...98,095,538
Ensembl chr 6:98,032,520...98,095,480 		JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO
IBA		 (PMID:20921139), (PMID:25215947)
GO_REF:0000033
(PMID:23524951)		 RGD
GO_Central		 PMID:20921139 PMID:23524951 PMID:25215947 GO_REF:0000033 NCBI chr 3:77,700,936...77,890,221
Ensembl chr 3:77,700,936...77,890,221 		JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in ISO
ISS		 (PMID:29180427)
GO_REF:0000024		 RGD
UniProt		 PMID:29180427 GO_REF:0000024 NCBI chr12:17,049,766...17,055,954
Ensembl chr12:17,049,777...17,058,026 		JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within ISO MGI:4460281 (PMID:30930081) RGD PMID:30930081 NCBI chr12:12,093,834...12,109,043
Ensembl chr12:12,093,834...12,108,511 		JBrowse link
G Atg10 autophagy related 10 involved_in ISO
IBA		 (PMID:16963840)
GO_REF:0000033		 RGD
GO_Central		 PMID:16963840 GO_REF:0000033 NCBI chr 2:22,109,304...22,398,313
Ensembl chr 2:22,108,426...22,398,233 		JBrowse link
G Atg101 autophagy related 101 involved_in ISO
IEA
IBA		 (PMID:19225151), (PMID:19597335)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000107
(MGI:6810791|PMID:19225151)		 RGD
TreeGrafter
GO_Central
Ensembl		 PMID:19225151 PMID:19597335 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:6810791 NCBI chr 7:132,398,477...132,407,643
Ensembl chr 7:132,398,483...132,407,633 		JBrowse link
G Atg12 autophagy related 12 involved_in ISO
IEA		 (MGI:2137756|PMID:11266458)
GO_REF:0000118
GO_REF:0000002		 RGD
TreeGrafter
InterPro		 PMID:11266458 GO_REF:0000002 GO_REF:0000118 MGI:2137756 NCBI chr18:39,452,247...39,462,424
Ensembl chr18:39,452,191...39,462,418 		JBrowse link
G Atg13 autophagy related 13 acts_upstream_of_or_within
involved_in		 ISO (PMID:19211835)
(MGI:3849242|PMID:19258318), (MGI:6810791|PMID:19225151)
(PMID:19211835), (PMID:19225151)		 RGD PMID:19211835 PMID:19225151 PMID:19258318 MGI:3849242 MGI:6810791 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043 		JBrowse link
G Atg14 autophagy related 14 involved_in ISO
IBA		 (PMID:19270696), (PMID:20713597)
GO_REF:0000033		 RGD
GO_Central		 PMID:19270696 PMID:20713597 GO_REF:0000033 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113 		JBrowse link
G Atg16l1 autophagy related 16-like 1 involved_in ISO
IBA		 (MGI:2137756|PMID:11266458)
GO_REF:0000033
(PMID:30778222)		 RGD
GO_Central		 PMID:11266458 PMID:30778222 GO_REF:0000033 MGI:2137756 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529 		JBrowse link
G Atg16l2 autophagy related 16-like 2 NOT|involved_in ISO
IBA		 (MGI:6436405|PMID:22082872)
GO_REF:0000033
(MGI:2137756|PMID:11266458)		 RGD
GO_Central		 PMID:11266458 PMID:22082872 GO_REF:0000033 MGI:2137756 MGI:6436405 NCBI chr 1:155,687,386...155,703,419
Ensembl chr 1:155,684,564...155,703,420 		JBrowse link
G Atg2a autophagy related 2A involved_in ISO
IBA		 (PMID:28561066)
GO_REF:0000033		 RGD
GO_Central		 PMID:28561066 GO_REF:0000033 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242 		JBrowse link
G Atg2b autophagy related 2B involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:124,522,283...124,592,412
Ensembl chr 6:124,525,523...124,592,015 		JBrowse link
G Atg3 autophagy related 3 involved_in
acts_upstream_of_or_within		 ISS
ISO
IBA
IEA		 GO_REF:0000024
(PMID:21220506)
GO_REF:0000033
GO_REF:0000118
(MGI:4835103|PMID:20723759), (MGI:6206844|PMID:24747438)
GO_REF:0000107
(PMID:33446636)		 UniProt
RGD
GO_Central
TreeGrafter
Ensembl		 PMID:20723759 PMID:21220506 PMID:24747438 PMID:33446636 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:4835103 MGI:6206844 NCBI chr11:55,624,914...55,653,249
Ensembl chr11:55,624,917...55,653,224 		JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in ISO
IBA		 (PMID:21177865)
GO_REF:0000033		 RGD
GO_Central		 PMID:21177865 GO_REF:0000033 NCBI chr  X:104,665,345...104,765,271
Ensembl chr  X:104,665,345...104,765,268 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IBA		 (MGI:5630037|PMID:25578879)
GO_REF:0000033
(PMID:21177865)		 RGD
GO_Central		 PMID:21177865 PMID:25578879 GO_REF:0000033 MGI:5630037 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103 		JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in ISO
IBA		 (PMID:21177865)
GO_REF:0000033		 RGD
GO_Central		 PMID:21177865 GO_REF:0000033 NCBI chr 5:113,867,218...113,935,534
Ensembl chr 5:113,867,092...113,934,830 		JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO
IBA		 (PMID:21177865)
GO_REF:0000033		 RGD
GO_Central		 PMID:21177865 GO_REF:0000033 NCBI chr 8:19,807,733...19,817,321
Ensembl chr 8:19,807,766...19,817,321 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within
involved_in		 IMP
ISO
IEA		 (PMID:23704209)
GO_REF:0000118
GO_REF:0000107
(PMID:23202584)
(MGI:2137756|PMID:11266458)		 RGD
TreeGrafter
Ensembl		 PMID:11266458 PMID:23202584 PMID:23704209 PMID:16420522 GO_REF:0000107 GO_REF:0000118 MGI:2137756, RGD:1643189 NCBI chr20:47,798,217...47,889,216
Ensembl chr20:47,798,290...47,889,209 		JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (MGI:4420830|PMID:20080761)
(PMID:23704209)
GO_REF:0000118
GO_REF:0000107
(PMID:22170151)		 RGD
TreeGrafter
Ensembl		 PMID:20080761 PMID:22170151 PMID:23704209 GO_REF:0000107 GO_REF:0000118 MGI:4420830 NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593 		JBrowse link
G Atg9a autophagy related 9A acts_upstream_of_or_within
involved_in		 ISO
IEA
ISS		 (PMID:15755735), (PMID:22456507)
GO_REF:0000107
MGI:4417824 (PMID:22456507), (PMID:23402761)
GO_REF:0000024
(PMID:29180427), (PMID:29437695), (PMID:32513819), (PMID:33468622)		 RGD
Ensembl
UniProt		 PMID:15755735 PMID:22456507 PMID:23402761 PMID:29180427 PMID:29437695 More... GO_REF:0000024 GO_REF:0000107 NCBI chr 9:76,677,403...76,688,050
Ensembl chr 9:76,677,404...76,687,986 		JBrowse link
G Atg9b autophagy related 9B acts_upstream_of_or_within ISO (PMID:15755735) RGD PMID:15755735 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651 		JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISS
ISO
IBA		 GO_REF:0000024
(PMID:28890335)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:28890335 GO_REF:0000024 GO_REF:0000033 NCBI chr12:34,072,710...34,122,142
Ensembl chr12:34,072,683...34,122,101 		JBrowse link
G Becn1 beclin 1 involved_in IMP
IBA
IEA
ISO
ISS		 GO_REF:0000033
GO_REF:0000118
(PMID:25891078)
(MGI:5619439|PMID:23332761)
GO_REF:0000024		 GO_Central
TreeGrafter
RGD
UniProt		 PMID:23332761 PMID:25891078 PMID:16420522 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 MGI:5619439, RGD:1643189 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742 		JBrowse link
G Becn2 beclin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:87,842,980...87,892,410
Ensembl chr13:87,844,531...87,845,787 		JBrowse link
G Ctsd cathepsin D acts_upstream_of_or_within ISO (PMID:15452145) RGD PMID:15452145 NCBI chr 1:197,527,467...197,539,343
Ensembl chr 1:197,527,467...197,539,488 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO
IBA		 (PMID:21072319)
GO_REF:0000033		 RGD
GO_Central		 PMID:21072319 GO_REF:0000033 NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:196,091,646...196,168,716 		JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in ISO
IBA		 (PMID:23182941)
GO_REF:0000033		 RGD
GO_Central		 PMID:23182941 GO_REF:0000033 NCBI chr10:57,794,072...57,795,671
Ensembl chr10:57,793,685...57,796,217 		JBrowse link
G ENSRNOG00000062718 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 1:206,501,714...206,508,984 JBrowse link
G ENSRNOG00000063835 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 5:69,986,346...69,986,519 JBrowse link
G ENSRNOG00000063933 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr  X:102,568,460...102,569,785 JBrowse link
G ENSRNOG00000067112 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 3:91,539,051...91,540,059 JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2182627 (PMID:24430976)		 Ensembl
RGD		 PMID:24430976 GO_REF:0000107 NCBI chr 1:5,727,111...5,845,338
Ensembl chr 1:5,727,066...5,920,555 		JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr10:54,714,777...54,718,099
Ensembl chr10:54,714,198...54,717,765 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:162,980,309...162,989,452
Ensembl chr 4:162,980,249...162,989,450 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr19:39,910,572...39,921,408
Ensembl chr19:39,910,534...39,924,628
Ensembl chr 8:39,910,534...39,924,628 		JBrowse link
G Gabarapl3 GABA type A receptor associated protein like 3 involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 8:89,246,175...89,247,132
Ensembl chr 8:89,246,195...89,247,139 		JBrowse link
G Gabarapl4 gamma-aminobutyric acid receptor associated protein like 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:55,052,756...55,053,109
Ensembl chr19:55,052,756...55,053,109 		JBrowse link
G Ifgga2l1 interferon-gamma-inducible GTPase 2 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:53,761,118...53,770,183
Ensembl chr18:53,748,631...53,772,834 		JBrowse link
G Ifgga2l2 interferon-gamma-inducible GTPase 2 like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:53,870,838...53,890,135
Ensembl chr18:53,870,795...53,892,024 		JBrowse link
G Ifgga4l interferon-gamma-inducible GTPase 4 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:53,838,426...53,854,858
Ensembl chr18:53,851,449...53,852,696 		JBrowse link
G Ifi47 interferon gamma inducible protein 47 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:33,297,618...33,305,248
Ensembl chr10:33,285,450...33,306,216 		JBrowse link
G Igtp interferon gamma induced GTPase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:42,374,590...42,382,410
Ensembl chr10:42,357,400...42,408,247 		JBrowse link
G Irgm immunity-related GTPase M involved_in ISO
IBA		 (PMID:16888103)
GO_REF:0000033
(MGI:3656111|PMID:16888103)		 RGD
GO_Central		 PMID:16888103 GO_REF:0000033 MGI:3656111 NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO
IBA
IDA		 (PMID:24290141)
GO_REF:0000033
PMID:11060023		 RGD
GO_Central		 PMID:24290141 PMID:11060023 GO_REF:0000033, RGD:8554284 NCBI chr 3:143,783,024...143,784,670
Ensembl chr 3:143,783,024...143,784,670 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in IBA
ISO
IEA		 GO_REF:0000033
(PMID:37943659)
GO_REF:0000118		 GO_Central
RGD
TreeGrafter		 PMID:37943659 GO_REF:0000033 GO_REF:0000118 NCBI chr19:49,665,795...49,673,655
Ensembl chr19:49,665,791...49,677,690 		JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of ISO MGI:2450997 (PMID:23695157) RGD PMID:23695157 NCBI chr 6:488,923...506,882
Ensembl chr 6:488,969...506,860 		JBrowse link
G Nsfl1c NSFL1 cofactor involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 3:139,978,306...140,002,876
Ensembl chr 3:139,978,301...140,002,870 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 6:132,096,992...132,156,702
Ensembl chr 6:132,096,901...132,154,583 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 acts_upstream_of_or_within
involved_in		 IMP
ISO
IEA
IBA		 (PMID:24098492)
GO_REF:0000118
GO_REF:0000033
(PMID:33637724)		 RGD
TreeGrafter
GO_Central		 PMID:24098492 PMID:33637724 PMID:12453151 GO_REF:0000033 GO_REF:0000118, RGD:2303129 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO MGI:2149116 (PMID:15452145) RGD PMID:15452145 NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Rab19 RAB19, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:68,157,159...68,166,889
Ensembl chr 4:68,156,881...68,166,886 		JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO
IBA
ISS		 (PMID:22939626)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:22939626 GO_REF:0000024 GO_REF:0000033 NCBI chr14:94,422,219...94,448,799
Ensembl chr14:94,415,275...94,448,248 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:202,405,759...202,413,868
Ensembl chr  X:202,405,759...202,413,868 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO
IBA		 (PMID:22452336)
GO_REF:0000033		 RGD
GO_Central		 PMID:22452336 GO_REF:0000033 NCBI chr 9:35,943,522...35,967,367
Ensembl chr 9:35,944,085...35,966,927 		JBrowse link
G Rab33a RAB33A, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:127,694,219...127,706,378
Ensembl chr  X:127,694,964...127,706,378 		JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in ISO
IBA		 (MGI:5447922|PMID:18448665)
GO_REF:0000033		 RGD
GO_Central		 PMID:18448665 GO_REF:0000033 MGI:5447922 NCBI chr 2:135,528,116...135,538,719
Ensembl chr 2:135,528,116...135,538,719 		JBrowse link
G Rab43 RAB43, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:120,249,650...120,269,174
Ensembl chr 4:120,249,879...120,269,174 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:19956673) RGD PMID:19956673 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in ISO
IBA		 (PMID:19225151), (PMID:28890335)
GO_REF:0000033
(PMID:23392225)
(MGI:3849242|PMID:19258318), (MGI:6810791|PMID:19225151)		 RGD
GO_Central		 PMID:19225151 PMID:19258318 PMID:23392225 PMID:28890335 GO_REF:0000033 MGI:3849242 MGI:6810791 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560 		JBrowse link
G RGD1309362 similar to interferon-inducible GTPase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G RGD1559575 similar to novel protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:33,252,146...33,276,364
Ensembl chr10:33,252,134...33,276,225 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in ISO
IBA		 (PMID:26416964)
GO_REF:0000033		 RGD
GO_Central		 PMID:26416964 GO_REF:0000033 NCBI chr 9:75,702,937...75,727,719
Ensembl chr 9:75,703,750...75,723,525 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISS
IBA
ISO
IEA		 GO_REF:0000024
GO_REF:0000033
(PMID:30568238), (PMID:30842662), (PMID:37535724)
GO_REF:0000107
(MGI:6305034|PMID:30568238)		 UniProt
GO_Central
RGD
Ensembl		 PMID:30568238 PMID:30842662 PMID:37535724 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:6305034 NCBI chr18:27,332,119...27,338,371
Ensembl chr18:27,332,119...27,338,335 		JBrowse link
G Stx12 syntaxin 12 involved_in ISO
IBA
IEA		 (PMID:24095276)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:24095276 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:145,062,978...145,092,423
Ensembl chr 5:145,063,587...145,092,377 		JBrowse link
G Synpo2 synaptopodin 2 involved_in IMP PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chr 2:211,217,099...211,371,267
Ensembl chr 2:211,216,783...211,371,267 		JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO (PMID:23908015) RGD PMID:23908015 NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:201,127,034...201,138,742 		JBrowse link
G Tmem41b transmembrane protein 41B involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:30093494), (PMID:30126924), (PMID:30933966)		 UniProt
GO_Central
RGD		 PMID:30093494 PMID:30126924 PMID:30933966 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:164,012,585...164,026,967
Ensembl chr 1:164,012,592...164,026,933 		JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:24,253,986...24,272,250
Ensembl chr 5:24,260,568...24,267,968 		JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in ISO
IBA
IEA
ISS		 (PMID:19056683)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:19056683 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:143,881,427...143,890,104
Ensembl chr 3:143,882,021...143,890,097 		JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in ISO
IEA		 (PMID:23524951)
GO_REF:0000107		 RGD
Ensembl		 PMID:23524951 GO_REF:0000107 NCBI chr 3:87,963,517...87,988,316
Ensembl chr 3:87,963,514...87,983,507 		JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 5:79,005,139...79,016,615
Ensembl chr 5:78,999,389...79,022,018 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO
IEA
IBA		 (PMID:20529957)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000107		 RGD
TreeGrafter
GO_Central
Ensembl		 PMID:20529957 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr17:6,439,002...6,477,096
Ensembl chr17:6,439,002...6,477,090 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,853,086...17,856,505
Ensembl chr  X:17,853,114...17,856,505 		JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:27,884,364...27,912,767
Ensembl chr 6:27,884,680...27,912,649
Ensembl chr20:27,884,680...27,912,649 		JBrowse link
G Ubxn2b UBX domain protein 2B involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:19,303,634...19,333,181
Ensembl chr 5:19,303,682...19,326,849 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO
IBA		 (PMID:19225151), (PMID:28890335)
GO_REF:0000033
(MGI:3849242|PMID:19258318), (MGI:6810791|PMID:19225151)		 RGD
GO_Central		 PMID:19225151 PMID:19258318 PMID:28890335 GO_REF:0000033 MGI:3849242 MGI:6810791 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,454,030...46,530,407 		JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 8:57,992,396...58,000,220
Ensembl chr 8:57,992,723...57,999,467 		JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO
IBA
IEA
ISS		 (PMID:28890335), (PMID:30093494), (PMID:30933966)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:28890335 PMID:30093494 PMID:30933966 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:71,405,058...71,505,045
Ensembl chr10:71,405,452...71,505,007 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
IEA
ISS		 (PMID:28561066)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:28561066 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:14,776,280...14,782,202
Ensembl chr  X:14,776,293...14,782,202 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in ISO (PMID:28561066) RGD PMID:28561066 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:28561066) RGD PMID:28561066 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:20505359), (PMID:28561066), (PMID:28890335)		 UniProt
RGD		 PMID:20505359 PMID:28561066 PMID:28890335 GO_REF:0000024 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794 		JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:9,635,009...9,726,520
Ensembl chr12:9,635,025...9,726,519 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 acts_upstream_of_or_within ISO MGI:2683833 (PMID:27994061) RGD PMID:27994061 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (PMID:23918802) RGD PMID:23918802 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547 		JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in ISO
ISS		 (PMID:25495476)
GO_REF:0000024		 RGD
GO_Central		 PMID:25495476 GO_REF:0000024 NCBI chr 8:36,544,462...36,589,684
Ensembl chr 8:36,544,535...36,589,683 		JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:25495476)		 GO_Central
Ensembl
RGD		 PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:16,654,572...16,694,628
Ensembl chr 6:16,654,614...16,694,626 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO (PMID:23916833) RGD PMID:23916833 NCBI chr 7:122,826,696...122,987,711
Ensembl chr 7:122,826,696...122,987,703 		JBrowse link
G Mtm1 myotubularin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000118
MGI:2450997 (PMID:23695157)
GO_REF:0000033		 TreeGrafter
RGD
GO_Central		 PMID:23695157 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:488,923...506,882
Ensembl chr 6:488,969...506,860 		JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISS
ISO		 GO_REF:0000024
(PMID:20181828)		 UniProt
RGD		 PMID:20181828 GO_REF:0000024 NCBI chr 1:181,213,292...181,215,327
Ensembl chr 1:181,213,368...181,215,281 		JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO
IBA
IEA
ISS		 (PMID:25484098)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
TreeGrafter
Ensembl		 PMID:25484098 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr10:54,718,663...54,722,784
Ensembl chr10:54,717,724...54,722,782 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) RGD PMID:19279012 NCBI chr 5:150,530,523...150,542,635
Ensembl chr 5:150,530,523...150,542,635 		JBrowse link
G Scfd1 sec1 family domain containing 1 involved_in ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 6:68,795,810...68,874,076
Ensembl chr 6:68,795,878...68,874,078 		JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 2:185,500,029...185,520,811
Ensembl chr 2:185,500,004...185,522,026 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:45,457,962...45,465,101
Ensembl chr10:45,457,605...45,468,876 		JBrowse link
G Tmem39a transmembrane protein 39a involved_in ISO
IBA
ISS		 (PMID:31806350)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:31806350 GO_REF:0000024 GO_REF:0000033 NCBI chr11:62,160,631...62,189,964
Ensembl chr11:62,160,631...62,189,964 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in ISO (PMID:30952800), (PMID:31271352) RGD PMID:30952800 PMID:31271352 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242 		JBrowse link
G Becn1 beclin 1 IMP RGD PMID:25561470 RGD:11561937 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO (PMID:21072319) RGD PMID:21072319 NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:196,091,646...196,168,716 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO (PMID:25484098) RGD PMID:25484098 NCBI chr 3:16,223,367...16,264,261
Ensembl chr 3:16,223,367...16,264,154 		JBrowse link
G Moap1 modulator of apoptosis 1 involved_in ISO (PMID:33783314)
(MGI:6810697|PMID:33783314)		 RGD PMID:33783314 MGI:6810697 NCBI chr 6:121,882,565...121,884,500
Ensembl chr 6:121,882,366...121,898,643 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO
IEA		 (PMID:25578879)
GO_REF:0000107		 RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr17:81,496,669...81,668,180
Ensembl chr17:81,496,670...81,668,029 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO
IEA		 (PMID:25578879)
GO_REF:0000107		 RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr10:82,706,016...82,734,938
Ensembl chr10:82,701,098...82,734,938 		JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO
IEA		 (PMID:25578879)
GO_REF:0000107		 RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr 7:63,020,004...63,035,086
Ensembl chr 7:63,020,000...63,035,078 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
ISS
IEA		 (PMID:25495476)
GO_REF:0000024
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr13:39,355,698...39,429,154
Ensembl chr13:39,352,247...39,429,169 		JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:25495476)
GO_REF:0000107		 GO_Central
RGD
Ensembl		 PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr13:96,757,430...96,828,930
Ensembl chr13:96,757,460...96,829,478 		JBrowse link
G Ralb RAS like proto-oncogene B involved_in ISO
IEA		 (PMID:24056301)
GO_REF:0000107		 RGD
Ensembl		 PMID:24056301 GO_REF:0000107 NCBI chr13:30,588,036...30,624,199
Ensembl chr13:30,588,033...30,624,202 		JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 involved_in ISO
IEA		 (PMID:21068542)
(MGI:5634888|PMID:21068542)
GO_REF:0000107		 RGD
Ensembl		 PMID:21068542 GO_REF:0000107 MGI:5634888 NCBI chr 2:233,750,838...233,784,817
Ensembl chr 2:233,750,838...233,784,784 		JBrowse link
G Snx18 sorting nexin 18 involved_in ISO (PMID:29437695) RGD PMID:29437695 NCBI chr 2:45,232,325...45,258,345
Ensembl chr 2:45,232,325...45,258,345 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in ISO (PMID:32513819) RGD PMID:32513819 NCBI chr 5:74,683,902...74,813,013
Ensembl chr 5:74,684,015...74,792,631 		JBrowse link
G Snx4 sorting nexin 4 involved_in ISO
IBA		 (PMID:32513819), (PMID:33468622)
GO_REF:0000033		 RGD
GO_Central		 PMID:32513819 PMID:33468622 GO_REF:0000033 NCBI chr11:67,460,872...67,518,143
Ensembl chr11:67,460,870...67,518,174 		JBrowse link
G Snx7 sorting nexin 7 involved_in ISO (PMID:32513819) RGD PMID:32513819 NCBI chr 2:205,843,164...205,927,737
Ensembl chr 2:205,842,837...205,927,763 		JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 5:79,005,139...79,016,615
Ensembl chr 5:78,999,389...79,022,018 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 IMP RGD PMID:23448468 RGD:13208863 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
ISS
IEA		 (PMID:31271352)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:31271352 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:14,776,280...14,782,202
Ensembl chr  X:14,776,293...14,782,202 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:31271352) RGD PMID:31271352 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846 		JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfip2 ADP-ribosylation factor interacting protein 2 involved_in ISO
ISS		 (PMID:33773106)
GO_REF:0000024		 RGD
UniProt		 PMID:33773106 GO_REF:0000024 NCBI chr 1:159,974,255...159,980,398
Ensembl chr 1:159,974,201...159,980,336 		JBrowse link
G Atg13 autophagy related 13 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043 		JBrowse link
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within ISO PR:Q80W47 (PMID:24954904) RGD PMID:24954904 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IEA		 (PMID:33773106)
GO_REF:0000107		 RGD
Ensembl		 PMID:33773106 GO_REF:0000107 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103 		JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO (PMID:33773106) RGD PMID:33773106 NCBI chr 8:19,807,733...19,817,321
Ensembl chr 8:19,807,766...19,817,321 		JBrowse link
G Atg9a autophagy related 9A involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 9:76,677,403...76,688,050
Ensembl chr 9:76,677,404...76,687,986 		JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651 		JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) RGD PMID:33773106 NCBI chr 2:171,623,668...172,202,576
Ensembl chr 2:171,621,507...172,202,724 		JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23455425)
GO_REF:0000107		 RGD
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:158,304,287...158,335,342 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 6:132,096,992...132,156,702
Ensembl chr 6:132,096,901...132,154,583 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:24098492)		 Ensembl
RGD		 PMID:24098492 GO_REF:0000107 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048 		JBrowse link
G Stx17 syntaxin 17 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:62,446,187...62,504,451 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:14,776,280...14,782,202
Ensembl chr  X:14,776,293...14,782,202 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within		 ISO
IBA
ISS		 (PMID:28561066)
PR:Q8C0J2 (PMID:24954904)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:24954904 PMID:28561066 GO_REF:0000024 GO_REF:0000033 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794 		JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chek2 checkpoint kinase 2 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr12:45,788,823...45,821,382
Ensembl chr12:45,788,827...45,821,286 		JBrowse link
G Efnb1 ephrin B1 involved_in
acts_upstream_of_positive_effect		 IEA
ISO		 GO_REF:0000107
(PMID:33280498)		 Ensembl
RGD		 PMID:33280498 GO_REF:0000107 NCBI chr  X:64,257,351...64,270,158
Ensembl chr  X:64,257,351...64,270,157 		JBrowse link
G Ephb2 Eph receptor B2 acts_upstream_of_positive_effect ISO (PMID:33280498) RGD PMID:33280498 NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059 		JBrowse link
G Ift20 intraflagellar transport 20 involved_in ISO (MGI:5527012|PMID:24089209) RGD PMID:24089209 MGI:5527012 NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124 		JBrowse link
G Ift88 intraflagellar transport 88 involved_in ISO (MGI:5527012|PMID:24089209) RGD PMID:24089209 MGI:5527012 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Mtmr3 myotubularin related protein 3 involved_in IEA
ISO		 GO_REF:0000107
(PMID:25578879)		 Ensembl
RGD		 PMID:25578879 GO_REF:0000107 NCBI chr14:79,340,523...79,460,947
Ensembl chr14:79,340,513...79,461,041 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO
IEA		 (PMID:23524951)
GO_REF:0000107		 RGD
Ensembl		 PMID:23524951 GO_REF:0000107 NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:158,884,804...158,994,311 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO (PMID:25578879) RGD PMID:25578879 NCBI chr 9:66,563,747...66,657,873
Ensembl chr 9:66,563,727...66,657,868 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in ISO (PMID:20545908) RGD PMID:20545908 NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:202,405,759...202,413,868
Ensembl chr  X:202,405,759...202,413,868 		JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISO
IEA
ISS		 (PMID:27334615)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:27334615 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:49,766,340...49,791,434
Ensembl chr 5:49,766,325...49,791,408 		JBrowse link
G Rnf186 ring finger protein 186 acts_upstream_of_positive_effect ISO (PMID:33280498) RGD PMID:33280498 NCBI chr 5:151,210,492...151,211,716
Ensembl chr 5:151,210,492...151,211,716 		JBrowse link
G Rnf5 ring finger protein 5 acts_upstream_of_or_within ISO MGI:3775796 (PMID:23093945) RGD PMID:23093945 NCBI chr20:4,145,539...4,147,985
Ensembl chr20:4,145,507...4,147,985 		JBrowse link
G Tbc1d14 TBC1 domain family, member 14 involved_in ISO
IBA
IEA		 (PMID:22613832)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:22613832 GO_REF:0000033 GO_REF:0000107 NCBI chr14:74,172,652...74,272,182
Ensembl chr14:74,172,664...74,272,183 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:20529957) RGD PMID:20529957 NCBI chr  X:17,853,086...17,856,505
Ensembl chr  X:17,853,114...17,856,505 		JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in IMP
IBA
ISO		 GO_REF:0000033
(PMID:22186024)		 GO_Central
RGD		 PMID:22186024 PMID:22186024 GO_REF:0000033, RGD:13442482 NCBI chr 5:153,292,722...153,312,143
Ensembl chr 5:153,292,751...153,312,139 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (MGI:6383362|PMID:25878248) RGD PMID:25878248 MGI:6383362 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434 		JBrowse link
G Dnajc16 DnaJ heat shock protein family (Hsp40) member C16 involved_in ISS
ISO		 GO_REF:0000024
(PMID:32492081)		 UniProt
RGD		 PMID:32492081 GO_REF:0000024 NCBI chr 5:154,073,372...154,106,246
Ensembl chr 5:154,075,261...154,106,136 		JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:9,635,009...9,726,520
Ensembl chr12:9,635,025...9,726,519 		JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO MGI:6356543 (PMID:20810658), (PMID:27358407) RGD PMID:20810658 PMID:27358407 NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,469,582...15,477,443 		JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) RGD PMID:23023224 NCBI chr19:13,405,482...13,440,384
Ensembl chr19:13,405,501...13,440,384 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    cellular process 18812
      process utilizing autophagic mechanism 555
        autophagy 555
          macroautophagy 324
            autophagosome organization 134
              autophagosome assembly + 126
              autophagosome membrane disassembly 0
              regulation of autophagosome size + 3
Path 2
Term Annotations click to browse term
  biological_process 20413
    cellular process 18812
      cellular component organization or biogenesis 7290
        cellular component organization 6980
          organelle organization 3887
            vacuole organization 235
              autophagosome organization 134
                autophagosome assembly + 126
                autophagosome membrane disassembly 0
                regulation of autophagosome size + 3
paths to the root