Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:autophagosome organization
go back to main search page
Accession:GO:1905037 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an autophagosome.
Synonyms:exact_synonym: autophagic vacuole organization
 related_synonym: initial autophagic vacuole organization


show annotations for term's descendants           Sort by:
autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO
IEA 		(PMID:22186024)
GO_REF:0000107 		RGD
Ensembl		 PMID:22186024 GO_REF:0000107 NCBI chr 5:153,292,722...153,312,143
Ensembl chr 5:158,575,749...158,595,156 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO
IEA 		(PMID:23707074)
GO_REF:0000107 		RGD
Ensembl		 PMID:23707074 GO_REF:0000107 NCBI chr 2:174,609,437...174,615,457
Ensembl chr 2:176,907,154...176,916,985 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha acts_upstream_of_or_within ISO MGI:2685045 (PMID:24098492) RGD PMID:24098492 NCBI chr 1:170,577,942...170,684,353
Ensembl chr 1:180,012,248...180,117,773 		JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta acts_upstream_of_or_within ISO
IEA 		MGI:1203729 (PMID:24098492)
GO_REF:0000107 		RGD
Ensembl		 PMID:24098492 GO_REF:0000107 NCBI chr13:44,494,673...44,555,663
Ensembl chr13:47,047,127...47,107,725 		JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO
IEA 		(PMID:25365221)
GO_REF:0000107 		RGD
Ensembl		 PMID:25365221 GO_REF:0000107 NCBI chr 3:109,007,658...109,072,904
Ensembl chr 3:129,461,477...129,526,742 		JBrowse link
G Zfyve26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within ISO
IEA 		(PMID:25365221)
GO_REF:0000107 		RGD
Ensembl		 PMID:25365221 GO_REF:0000107 NCBI chr 6:103,764,864...103,828,520
Ensembl chr 6:103,765,510...103,828,463 		JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:20921139), (PMID:25215947)
(PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:28890335), (PMID:30778222), (PMID:33637724)
GO_REF:0000107
GO_REF:0000033
(PMID:23524951) 		RGD
Ensembl
GO_Central		 PMID:20713597 PMID:20921139 PMID:23202584 PMID:23392225 PMID:23524951 More... GO_REF:0000033 GO_REF:0000107 NCBI chr 3:98,156,626...98,345,876
Ensembl chr 3:98,156,652...98,345,872 		JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in ISO
IEA
ISS 		(PMID:29180427)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:29180427 GO_REF:0000024 GO_REF:0000107 NCBI chr12:17,049,766...17,055,954
Ensembl chr12:22,163,466...22,171,731 		JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within ISO MGI:4460281 (PMID:30930081) RGD PMID:30930081 NCBI chr12:12,093,834...12,109,043
Ensembl chr12:17,207,315...17,222,467 		JBrowse link
G Atg10 autophagy related 10 involved_in
acts_upstream_of_or_within 		ISO
IBA 		(PMID:16963840)
(PMID:23202584)
GO_REF:0000033 		RGD
GO_Central		 PMID:16963840 PMID:23202584 GO_REF:0000033 NCBI chr 2:22,109,304...22,398,313
Ensembl chr 2:23,844,482...24,133,368 		JBrowse link
G Atg101 autophagy related 101 involved_in ISO
IBA 		(PMID:19225151), (PMID:19597335)
GO_REF:0000033 		RGD
GO_Central		 PMID:19225151 PMID:19597335 GO_REF:0000033 NCBI chr 7:132,398,477...132,407,643
Ensembl chr 7:134,272,847...134,286,379 		JBrowse link
G Atg12 autophagy related 12 involved_in IEA
IBA
ISO 		GO_REF:0000002
GO_REF:0000033
(PMID:11266458) 		InterPro
GO_Central
RGD		 PMID:11266458 GO_REF:0000002 GO_REF:0000033 NCBI chr18:39,452,247...39,462,424
Ensembl chr18:41,635,835...41,649,261 		JBrowse link
G Atg13 autophagy related 13 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:19211835), (PMID:19225151)
(PMID:19211835), (PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:28890335), (PMID:30778222), (PMID:33637724)
GO_REF:0000107
GO_REF:0000002
(PMID:19225151), (PMID:19258318) 		RGD
Ensembl
InterPro		 PMID:19211835 PMID:19225151 PMID:19258318 PMID:20713597 PMID:23202584 More... GO_REF:0000002 GO_REF:0000107 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:98,101,552...98,136,743 		JBrowse link
G Atg14 autophagy related 14 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:19270696), (PMID:20713597)
(PMID:25891078), (PMID:33637724)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:19270696 PMID:20713597 PMID:25891078 PMID:33637724 GO_REF:0000033 GO_REF:0000107 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:23,275,457...23,306,815 		JBrowse link
G Atg16l1 autophagy related 16-like 1 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:30778222)
(PMID:23202584)
GO_REF:0000117
GO_REF:0000107
GO_REF:0000002
(PMID:11266458)
GO_REF:0000033 		RGD
UniProt
Ensembl
InterPro
GO_Central		 PMID:11266458 PMID:23202584 PMID:30778222 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:95,869,865...95,905,357 		JBrowse link
G Atg16l2 autophagy related 16-like 2 NOT|involved_in ISO (PMID:22082872)
(PMID:11266458) 		RGD PMID:11266458 PMID:22082872 NCBI chr 1:155,687,386...155,703,419
Ensembl chr 1:165,102,936...165,115,473 		JBrowse link
G Atg2a autophagy related 2A involved_in ISO
IEA
IBA 		(PMID:28561066)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:28561066 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:212,971,844...212,991,528 		JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:130,286,979...130,357,109
Ensembl chr 6:130,286,986...130,357,109 		JBrowse link
G Atg3 autophagy related 3 involved_in
acts_upstream_of_or_within 		ISS
ISO
IBA
IEA 		GO_REF:0000024
(PMID:20723759), (PMID:24747438)
(PMID:21220506)
GO_REF:0000033
GO_REF:0000107
(PMID:33446636) 		UniProt
RGD
GO_Central
Ensembl		 PMID:20723759 PMID:21220506 PMID:24747438 PMID:33446636 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr11:55,624,914...55,653,249
Ensembl chr11:69,121,952...69,159,280 		JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in ISO
IEA
IBA 		(PMID:21177865)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:21177865 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:104,665,345...104,765,271
Ensembl chr  X:109,453,689...109,553,760 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:21177865)
(PMID:24290141)
GO_REF:0000107
(PMID:25578879)
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:21177865 PMID:24290141 PMID:25578879 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:101,726,782...101,761,622 		JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:21177865)
(PMID:24290141)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:21177865 PMID:24290141 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:113,867,218...113,935,534
Ensembl chr 5:118,982,918...119,052,695 		JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in
acts_upstream_of_or_within 		ISO
IBA 		(PMID:21177865)
(PMID:24290141)
GO_REF:0000033 		RGD
GO_Central		 PMID:21177865 PMID:24290141 GO_REF:0000033 NCBI chr 8:19,807,733...19,817,321
Ensembl chr 8:28,083,936...28,093,491 		JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within 		IMP
IEA
IBA
ISO 		GO_REF:0000117
GO_REF:0000033
(PMID:11266458)
(PMID:23704209)
GO_REF:0000107
(PMID:23202584) 		UniProt
GO_Central
RGD
Ensembl		 PMID:11266458 PMID:23202584 PMID:23704209 PMID:16420522 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117, RGD:1643189 NCBI chr20:47,798,217...47,889,216
Ensembl chr20:49,380,813...49,471,821 		JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within 		ISO
IBA
IEA 		(PMID:22170151)
(PMID:33446636), (PMID:37943659)
GO_REF:0000033
(PMID:20080761)
(PMID:23704209)
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:20080761 PMID:22170151 PMID:23704209 PMID:33446636 PMID:37943659 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:149,391,390...149,598,319 		JBrowse link
G Atg9a autophagy related 9A acts_upstream_of_or_within
involved_in 		ISO
ISS 		(PMID:15755735), (PMID:22456507)
MGI:4417824 (PMID:22456507), (PMID:23402761)
GO_REF:0000024
(PMID:29180427), (PMID:29437695), (PMID:32513819), (PMID:33468622) 		RGD
UniProt		 PMID:15755735 PMID:22456507 PMID:23402761 PMID:29180427 PMID:29437695 More... GO_REF:0000024 NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:84,126,071...84,136,666 		JBrowse link
G Atg9b autophagy related 9B acts_upstream_of_or_within ISO
IEA 		(PMID:15755735)
GO_REF:0000107 		RGD
Ensembl		 PMID:15755735 GO_REF:0000107 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:11,678,299...11,686,079 		JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO (PMID:22170151), (PMID:37943659) RGD PMID:22170151 PMID:37943659 NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:62,727,291...62,828,629 		JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISS
ISO
IBA 		GO_REF:0000024
(PMID:28890335)
GO_REF:0000033 		UniProt
RGD
GO_Central		 PMID:28890335 GO_REF:0000024 GO_REF:0000033 NCBI chr12:34,072,710...34,122,142
Ensembl chr12:39,733,458...39,782,934 		JBrowse link
G Bag3 BAG cochaperone 3 involved_in IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr 1:183,103,038...183,126,862
Ensembl chr 1:192,475,828...192,557,280 		JBrowse link
G Becn1 beclin 1 acts_upstream_of_or_within
involved_in 		IMP
ISO
IEA
IBA
ISS 		(PMID:33637724)
GO_REF:0000107
(PMID:23332761)
GO_REF:0000033
(PMID:25891078)
GO_REF:0000024 		RGD
Ensembl
GO_Central
UniProt		 PMID:23332761 PMID:25891078 PMID:33637724 PMID:16420522 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107, RGD:1643189 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,731,650...86,747,002 		JBrowse link
G Becn2 beclin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:87,842,980...87,892,410
Ensembl chr13:90,375,186...90,378,488 		JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 1:244,210,299...244,380,126
Ensembl chr 1:254,159,124...254,328,357 		JBrowse link
G Chek2 checkpoint kinase 2 acts_upstream_of_or_within ISO (PMID:22170151), (PMID:37943659) RGD PMID:22170151 PMID:37943659 NCBI chr12:45,788,823...45,821,382
Ensembl chr12:51,449,140...51,480,667 		JBrowse link
G Csnk1a1 casein kinase 1, alpha 1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr18:55,017,049...55,050,184
Ensembl chr18:57,287,412...57,320,538 		JBrowse link
G Ctsd cathepsin D acts_upstream_of_or_within ISO
IEA 		(PMID:15452145)
GO_REF:0000107 		RGD
Ensembl		 PMID:15452145 GO_REF:0000107 NCBI chr 1:197,527,467...197,539,343
Ensembl chr 1:206,956,944...206,968,821 		JBrowse link
G Cul1 cullin 1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 4:76,551,952...76,625,830
Ensembl chr 4:77,551,787...77,621,760 		JBrowse link
G Deptor DEP domain containing MTOR-interacting protein acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 7:86,514,859...86,668,817
Ensembl chr 7:88,404,620...88,574,041 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO
IEA
IBA 		(PMID:21072319)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:21072319 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:198,777,323...198,856,497 		JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in ISO
IBA 		(PMID:23182941)
GO_REF:0000033 		RGD
GO_Central		 PMID:23182941 GO_REF:0000033 NCBI chr10:57,794,072...57,795,671
Ensembl chr10:58,292,470...58,298,885 		JBrowse link
G Ep300 E1A binding protein p300 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 7:114,987,857...115,058,652
Ensembl chr 7:114,946,982...115,058,574 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO
IEA 		MGI:2182627 (PMID:24430976)
GO_REF:0000107 		RGD
Ensembl		 PMID:24430976 GO_REF:0000107 NCBI chr 1:5,727,111...5,845,338
Ensembl chr 1:7,547,342...7,669,604 		JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:54,714,777...54,718,099
Ensembl chr10:55,212,075...55,216,154 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:162,980,309...162,989,452
Ensembl chr 4:164,666,246...164,674,578 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:39,910,572...39,921,408
Ensembl chr19:56,819,791...56,830,660 		JBrowse link
G Gabarapl3 GABA type A receptor associated protein like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:89,246,175...89,247,132 JBrowse link
G Gabarapl4 gamma-aminobutyric acid receptor associated protein like 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:55,052,756...55,053,109 JBrowse link
G Ifgga2l1 interferon-gamma-inducible GTPase 2 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:53,761,118...53,770,183
Ensembl chr18:55,957,699...56,046,772 		JBrowse link
G Ifgga2l2 interferon-gamma-inducible GTPase 2 like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:53,870,838...53,890,135
Ensembl chr18:56,141,275...56,160,722 		JBrowse link
G Ifgga4l interferon-gamma-inducible GTPase 4 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:53,838,426...53,854,858
Ensembl chr18:56,108,872...56,125,302 		JBrowse link
G Ifi47 interferon gamma inducible protein 47 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:33,297,618...33,305,248
Ensembl chr10:33,776,399...33,806,372 		JBrowse link
G Igtp interferon gamma induced GTPase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:42,875,047...42,882,866
Ensembl chr10:42,876,790...42,882,858 		JBrowse link
G Irgm immunity-related GTPase M involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:16888103)
(PMID:28890335)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:16888103 PMID:28890335 GO_REF:0000033 GO_REF:0000107 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,732,961...33,743,228 		JBrowse link
G Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 1:156,272,116...156,277,687
Ensembl chr 1:165,684,091...165,703,178 		JBrowse link
G LOC134483037 interferon-inducible GTPase 1-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO
IEA
IBA
IDA 		(PMID:24290141)
GO_REF:0000107
GO_REF:0000033
PMID:11060023 		RGD
Ensembl
GO_Central		 PMID:24290141 PMID:11060023 GO_REF:0000033 GO_REF:0000107, RGD:8554284 NCBI chr 3:143,783,024...143,784,670
Ensembl chr 3:164,243,093...164,244,850 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO
IBA 		(PMID:37943659)
GO_REF:0000033 		RGD
GO_Central		 PMID:37943659 GO_REF:0000033 NCBI chr19:49,665,795...49,673,655
Ensembl chr19:66,574,407...66,584,358
Ensembl chr16:66,574,407...66,584,358 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 1:181,366,646...181,372,863
Ensembl chr 1:190,797,185...190,803,411 		JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of ISO MGI:2450997 (PMID:23695157) RGD PMID:23695157 NCBI chr 6:488,923...506,882
Ensembl chr 6:6,234,922...6,252,961 		JBrowse link
G Mtor mechanistic target of rapamycin kinase acts_upstream_of_or_within ISO (PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:28890335), (PMID:30778222), (PMID:33637724) RGD PMID:20713597 PMID:23202584 PMID:23392225 PMID:23524951 PMID:25891078 More... NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:164,167,928...164,277,435 		JBrowse link
G Nsfl1c NSFL1 cofactor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:139,978,306...140,002,876
Ensembl chr 3:160,438,708...160,463,228 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO
IEA 		(PMID:23455425)
GO_REF:0000107 		RGD
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chr 6:132,096,992...132,156,702
Ensembl chr 6:137,918,051...137,977,767 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in
acts_upstream_of_or_within 		IMP
IEA
ISO
IBA 		GO_REF:0000117
GO_REF:0000107
(PMID:24098492)
GO_REF:0000033
(PMID:33637724) 		UniProt
Ensembl
RGD
GO_Central		 PMID:24098492 PMID:33637724 PMID:12453151 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117, RGD:2303129 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:22,119,792...22,203,539 		JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 2:54,240,298...54,275,978
Ensembl chr 2:55,967,351...56,003,450 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO
IEA 		MGI:2149116 (PMID:15452145)
GO_REF:0000107 		RGD
Ensembl		 PMID:15452145 GO_REF:0000107 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:109,060,352...109,106,189 		JBrowse link
G Rab19 RAB19, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:68,157,159...68,166,889
Ensembl chr 4:69,123,924...69,134,383 		JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO
IBA
ISS 		(PMID:22939626)
GO_REF:0000033
GO_REF:0000024 		RGD
GO_Central
UniProt		 PMID:22939626 GO_REF:0000024 GO_REF:0000033 NCBI chr14:94,422,219...94,448,799
Ensembl chr14:98,623,635...98,661,582 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:211,835,073...211,843,337
Ensembl chr  X:211,835,073...211,843,337 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO
IEA
IBA 		(PMID:22452336)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:22452336 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:43,440,047...43,463,327
Ensembl chr 9:43,440,273...43,463,325 		JBrowse link
G Rab33a RAB33A, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:127,694,219...127,706,378
Ensembl chr  X:132,572,148...132,584,254 		JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in
acts_upstream_of_or_within 		ISO
IBA
IEA 		(PMID:18448665)
(PMID:23202584), (PMID:30778222)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:18448665 PMID:23202584 PMID:30778222 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:135,528,116...135,538,719
Ensembl chr 2:137,678,978...137,689,581 		JBrowse link
G Rab43 RAB43, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:120,249,650...120,269,174
Ensembl chr 4:121,806,992...121,854,561 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO
IEA 		(PMID:19956673)
GO_REF:0000107 		RGD
Ensembl		 PMID:19956673 GO_REF:0000107 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:121,983,938...122,064,185 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:19225151), (PMID:28890335)
(PMID:23202584), (PMID:30778222)
GO_REF:0000117
GO_REF:0000107
GO_REF:0000002
(PMID:19225151), (PMID:19258318)
GO_REF:0000033
(PMID:23392225) 		RGD
UniProt
Ensembl
InterPro
GO_Central		 PMID:19225151 PMID:19258318 PMID:23202584 PMID:23392225 PMID:28890335 More... GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:17,948,522...18,012,434 		JBrowse link
G Rbx1 ring-box 1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 7:112,976,863...113,001,051
Ensembl chr 7:114,870,972...114,881,191 		JBrowse link
G RGD1309362 similar to interferon-inducible GTPase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr18:55,943,264...55,994,435 JBrowse link
G RGD1559575 similar to novel protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:33,252,146...33,276,364
Ensembl chr10:33,753,267...33,776,789 		JBrowse link
G Rheb Ras homolog, mTORC1 binding acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 4:10,278,970...10,320,160
Ensembl chr 4:11,012,643...11,053,931 		JBrowse link
G Rps6kb1 ribosomal protein S6 kinase B1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr10:71,323,777...71,367,908
Ensembl chr10:71,815,614...71,865,238 		JBrowse link
G Rptor regulatory associated protein of MTOR, complex 1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr10:104,878,487...105,176,986
Ensembl chr10:105,376,943...105,675,413 		JBrowse link
G Rraga Ras-related GTP binding A acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 5:101,113,341...101,114,936
Ensembl chr 5:106,158,853...106,160,504 		JBrowse link
G Rragc Ras-related GTP binding C acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 5:136,148,239...136,167,773
Ensembl chr 5:141,433,040...141,452,548 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in ISO
IEA
IBA 		(PMID:26416964)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:26416964 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:75,702,937...75,727,719
Ensembl chr 9:83,154,445...83,172,897 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 8:119,390,207...119,475,863
Ensembl chr 8:119,390,207...119,475,863 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in
acts_upstream_of_or_within 		ISS
ISO
IEA
IBA 		GO_REF:0000024
(PMID:23202584)
GO_REF:0000107
(PMID:30568238)
GO_REF:0000033
(PMID:30568238), (PMID:30842662), (PMID:37535724) 		UniProt
RGD
Ensembl
GO_Central		 PMID:23202584 PMID:30568238 PMID:30842662 PMID:37535724 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr18:27,606,196...27,612,544
Ensembl chr18:27,606,196...27,611,947 		JBrowse link
G Stx12 syntaxin 12 involved_in ISO
IBA 		(PMID:24095276)
GO_REF:0000033 		RGD
GO_Central		 PMID:24095276 GO_REF:0000033 NCBI chr 5:145,062,978...145,092,423
Ensembl chr 5:150,334,836...150,376,346 		JBrowse link
G Syk spleen associated tyrosine kinase acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr17:12,604,615...12,678,437
Ensembl chr17:12,756,493...12,813,278 		JBrowse link
G Synpo2 synaptopodin 2 involved_in IMP PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chr 2:211,217,099...211,371,267
Ensembl chr 2:213,900,868...214,055,844 		JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO
IEA 		(PMID:23908015)
GO_REF:0000107 		RGD
Ensembl		 PMID:23908015 GO_REF:0000107 NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:210,556,270...210,568,033 		JBrowse link
G Tmem41b transmembrane protein 41B involved_in ISS
IEA
IBA
ISO 		GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
(PMID:30093494), (PMID:30126924), (PMID:30933966) 		UniProt
Ensembl
GO_Central
RGD		 PMID:30093494 PMID:30126924 PMID:30933966 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:164,012,585...164,026,967
Ensembl chr 1:173,447,367...173,461,597 		JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:24,253,986...24,272,250
Ensembl chr 5:29,051,264...29,069,484 		JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in ISO
IBA
IEA
ISS 		(PMID:19056683)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024 		RGD
GO_Central
Ensembl
UniProt		 PMID:19056683 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:143,881,427...143,890,104
Ensembl chr 3:164,343,205...164,350,225 		JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in
acts_upstream_of_or_within 		ISO (PMID:23524951)
(PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:28890335), (PMID:30778222), (PMID:33637724) 		RGD PMID:20713597 PMID:23202584 PMID:23392225 PMID:23524951 PMID:25891078 More... NCBI chr 3:108,418,537...108,443,330
Ensembl chr 3:108,418,513...108,443,328 		JBrowse link
G Trim21 tripartite motif-containing 21 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 1:156,964,896...156,987,504
Ensembl chr 1:166,376,829...166,399,449 		JBrowse link
G Trim32 tripartite motif-containing 32 involved_in
acts_upstream_of_or_within 		ISO (PMID:37943659)
(PMID:22170151), (PMID:37943659) 		RGD PMID:22170151 PMID:37943659 NCBI chr 5:79,005,139...79,016,615
Ensembl chr 5:84,014,803...84,042,748 		JBrowse link
G Ube3c ubiquitin protein ligase E3C acts_upstream_of_or_within ISO (PMID:33637724) RGD PMID:33637724 NCBI chr 4:5,648,932...5,749,922
Ensembl chr 4:6,323,831...6,424,845 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO
IBA
IEA 		(PMID:20529957)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:20529957 GO_REF:0000033 GO_REF:0000107 NCBI chr17:6,439,002...6,477,096
Ensembl chr17:6,444,124...6,482,499 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,853,086...17,856,505
Ensembl chr  X:21,229,197...21,232,268 		JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:27,884,364...27,912,767
Ensembl chr 6:33,603,804...33,632,202
Ensembl chr20:33,603,804...33,632,202 		JBrowse link
G Ubxn2b UBX domain protein 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:19,303,634...19,333,181
Ensembl chr 5:24,101,209...24,129,199 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:19225151), (PMID:28890335)
(PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:30778222), (PMID:33637724)
GO_REF:0000107
GO_REF:0000033
(PMID:19225151), (PMID:19258318) 		RGD
Ensembl
GO_Central		 PMID:19225151 PMID:19258318 PMID:20713597 PMID:23202584 PMID:23392225 More... GO_REF:0000033 GO_REF:0000107 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:51,511,492...51,537,746 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,951,038...47,029,844 		JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:57,992,396...58,000,220
Ensembl chr 8:66,888,788...66,895,379 		JBrowse link
G Usp7 ubiquitin specific peptidase 7 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr10:6,880,684...6,925,355
Ensembl chr10:7,367,604...7,432,013 		JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO
IBA
IEA
ISS 		(PMID:28890335), (PMID:30093494), (PMID:30933966)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024 		RGD
GO_Central
Ensembl
UniProt		 PMID:28890335 PMID:30093494 PMID:30933966 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:71,405,058...71,505,045
Ensembl chr10:71,903,227...72,002,319 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
IEA
ISS 		(PMID:28561066)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:28561066 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:17,448,207...17,454,117 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in ISO
IEA 		(PMID:28561066)
GO_REF:0000107 		RGD
Ensembl		 PMID:28561066 GO_REF:0000107 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:107,097,755...107,127,831 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO
IEA 		(PMID:28561066)
GO_REF:0000107 		RGD
Ensembl		 PMID:28561066 GO_REF:0000107 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:95,042,441...95,079,293 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:20505359), (PMID:28561066), (PMID:28890335) 		UniProt
Ensembl
RGD		 PMID:20505359 PMID:28561066 PMID:28890335 GO_REF:0000024 GO_REF:0000107 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:17,024,878...17,071,406 		JBrowse link
G Zranb1 zinc finger RANBP2-type containing 1 acts_upstream_of_or_within ISO (PMID:33637724) RGD PMID:33637724 NCBI chr 1:187,725,354...187,780,129
Ensembl chr 1:197,155,459...197,209,384 		JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO
IEA 		(PMID:22020285)
GO_REF:0000107 		RGD
Ensembl		 PMID:22020285 GO_REF:0000107 NCBI chr12:9,635,009...9,726,520
Ensembl chr12:14,749,043...14,840,273 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 acts_upstream_of_or_within ISO
IEA 		MGI:2683833 (PMID:27994061)
GO_REF:0000107 		RGD
Ensembl		 PMID:27994061 GO_REF:0000107 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,731,650...86,747,002 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (PMID:23918802) RGD PMID:23918802 NCBI chr20:3,924,263...3,941,238
Ensembl chr20:3,924,263...3,941,384 		JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in ISO
IEA
ISS 		(PMID:25495476)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
GO_Central		 PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:36,544,462...36,589,684
Ensembl chr 8:44,733,300...44,784,097 		JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:25495476) 		GO_Central
Ensembl
RGD		 PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:16,654,572...16,694,628
Ensembl chr 6:22,406,632...22,447,041 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO
IEA 		(PMID:23916833)
GO_REF:0000107 		RGD
Ensembl		 PMID:23916833 GO_REF:0000107 NCBI chr 7:122,826,696...122,987,711
Ensembl chr 7:124,706,080...124,867,239 		JBrowse link
G Mtm1 myotubularin 1 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2450997 (PMID:23695157) 		GO_Central
RGD		 PMID:23695157 GO_REF:0000033 NCBI chr 6:488,923...506,882
Ensembl chr 6:6,234,922...6,252,961 		JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:20181828) 		UniProt
Ensembl
RGD		 PMID:20181828 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:181,213,292...181,215,327
Ensembl chr 1:190,643,867...190,645,901 		JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO
IBA
IEA
ISS 		(PMID:25484098)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024 		RGD
GO_Central
Ensembl		 PMID:25484098 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:54,718,663...54,722,784
Ensembl chr10:55,217,351...55,221,471 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO
IEA 		(PMID:19279012)
GO_REF:0000107 		RGD
Ensembl		 PMID:19279012 GO_REF:0000107 NCBI chr 5:150,530,523...150,542,635
Ensembl chr 5:155,813,838...155,825,950 		JBrowse link
G Scfd1 sec1 family domain containing 1 involved_in ISO
IEA 		(PMID:21242315)
GO_REF:0000107 		RGD
Ensembl		 PMID:21242315 GO_REF:0000107 NCBI chr 6:68,795,810...68,874,076
Ensembl chr 6:74,531,276...74,633,750 		JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 2:185,500,029...185,520,811
Ensembl chr 2:188,188,751...188,211,600 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO
IEA 		(PMID:28195531)
GO_REF:0000107 		RGD
Ensembl		 PMID:28195531 GO_REF:0000107 NCBI chr10:45,457,962...45,465,101
Ensembl chr10:45,957,104...45,968,389 		JBrowse link
G Tmem39a transmembrane protein 39a involved_in ISO
IEA
IBA
ISS 		(PMID:31806350)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024 		RGD
Ensembl
GO_Central
UniProt		 PMID:31806350 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr11:62,160,631...62,189,964
Ensembl chr11:75,666,154...75,695,486 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in ISO
IEA 		(PMID:30952800), (PMID:31271352)
GO_REF:0000107 		RGD
Ensembl		 PMID:30952800 PMID:31271352 GO_REF:0000107 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:212,971,844...212,991,528 		JBrowse link
G Atg7 autophagy related 7 IMP RGD PMID:33372336 RGD:407571673 NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:149,391,390...149,598,319 		JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:62,727,291...62,828,629 		JBrowse link
G Becn1 beclin 1 IMP RGD PMID:25561470 RGD:11561937 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,731,650...86,747,002 		JBrowse link
G Chek2 checkpoint kinase 2 acts_upstream_of_or_within ISO (PMID:37943659) RGD PMID:37943659 NCBI chr12:45,788,823...45,821,382
Ensembl chr12:51,449,140...51,480,667 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO
IEA 		(PMID:21072319)
GO_REF:0000107 		RGD
Ensembl		 PMID:21072319 GO_REF:0000107 NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:198,777,323...198,856,497 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO
IEA 		(PMID:25484098)
GO_REF:0000107 		RGD
Ensembl		 PMID:25484098 GO_REF:0000107 NCBI chr 3:16,223,367...16,264,261
Ensembl chr 3:36,621,042...36,661,825 		JBrowse link
G Moap1 modulator of apoptosis 1 involved_in ISO (PMID:33783314) RGD PMID:33783314 NCBI chr 6:121,882,565...121,884,500
Ensembl chr 6:127,613,488...127,669,324 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO
IEA 		(PMID:25578879)
GO_REF:0000107 		RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr17:81,496,669...81,668,180
Ensembl chr17:86,405,081...86,576,430 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO
IEA 		(PMID:25578879)
GO_REF:0000107 		RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr10:82,706,016...82,734,938
Ensembl chr10:83,197,287...83,231,292 		JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO
IEA 		(PMID:25578879)
GO_REF:0000107 		RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr 7:63,020,004...63,035,086
Ensembl chr 7:64,905,328...64,920,373 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
ISS
IEA
IBA 		(PMID:25495476)
GO_REF:0000024
GO_REF:0000107
GO_REF:0000033 		RGD
GO_Central
Ensembl		 PMID:25495476 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:39,355,698...39,429,154
Ensembl chr13:41,908,051...41,981,611 		JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:25495476)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr13:99,288,984...99,362,817
Ensembl chr13:99,288,647...99,361,053 		JBrowse link
G Ralb RAS like proto-oncogene B involved_in ISO
IEA 		(PMID:24056301)
GO_REF:0000107 		RGD
Ensembl		 PMID:24056301 GO_REF:0000107 NCBI chr13:30,588,036...30,624,199
Ensembl chr13:33,140,835...33,176,998 		JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 involved_in ISO
IEA 		(PMID:21068542)
GO_REF:0000107 		RGD
Ensembl		 PMID:21068542 GO_REF:0000107 NCBI chr 2:233,750,838...233,784,817
Ensembl chr 2:236,410,436...236,445,140 		JBrowse link
G Snx18 sorting nexin 18 involved_in ISO
IEA 		(PMID:29437695)
GO_REF:0000107 		RGD
Ensembl		 PMID:29437695 GO_REF:0000107 NCBI chr 2:45,232,325...45,258,345
Ensembl chr 2:46,965,498...46,991,516 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in ISO
IEA 		(PMID:32513819)
GO_REF:0000107 		RGD
Ensembl		 PMID:32513819 GO_REF:0000107 NCBI chr 5:74,683,902...74,813,013
Ensembl chr 5:79,478,912...79,607,052 		JBrowse link
G Snx4 sorting nexin 4 involved_in ISO
IBA
IEA 		(PMID:32513819), (PMID:33468622)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:32513819 PMID:33468622 GO_REF:0000033 GO_REF:0000107 NCBI chr11:67,460,872...67,518,143
Ensembl chr11:80,965,967...81,028,448 		JBrowse link
G Snx7 sorting nexin 7 involved_in ISO
IEA 		(PMID:32513819)
GO_REF:0000107 		RGD
Ensembl		 PMID:32513819 GO_REF:0000107 NCBI chr 2:205,843,164...205,927,737
Ensembl chr 2:208,528,049...208,613,075 		JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 5:79,005,139...79,016,615
Ensembl chr 5:84,014,803...84,042,748 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 IMP RGD PMID:23448468 RGD:13208863 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:51,511,492...51,537,746 		JBrowse link
G Usp33 ubiquitin specific peptidase 33 involved_in ISO (PMID:24056301) RGD PMID:24056301 NCBI chr 2:241,283,209...241,328,479
Ensembl chr 2:243,943,175...243,988,424 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
ISS
IEA 		(PMID:31271352)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:31271352 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:17,448,207...17,454,117 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO
IEA 		(PMID:31271352)
GO_REF:0000107 		RGD
Ensembl		 PMID:31271352 GO_REF:0000107 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:95,042,441...95,079,293 		JBrowse link
positive regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elavl1 ELAV like RNA binding protein 1 IMP RGD PMID:33372336 RGD:407571673 NCBI chr12:2,640,936...2,684,787
Ensembl chr12:7,441,699...7,482,631 		JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within ISO (PMID:24954904) RGD PMID:24954904 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:95,869,865...95,905,357 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within ISO (PMID:23918802) RGD PMID:23918802 NCBI chr20:47,798,217...47,889,216
Ensembl chr20:49,380,813...49,471,821 		JBrowse link
G Irgm immunity-related GTPase M involved_in ISO (PMID:28389568) RGD PMID:28389568 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,732,961...33,743,228 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) RGD PMID:24954904 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:17,024,878...17,071,406 		JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfip2 ARF interacting protein 2 involved_in ISO
IEA
ISS 		(PMID:33773106)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:33773106 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:159,974,255...159,980,398
Ensembl chr 1:169,387,485...169,392,166 		JBrowse link
G Atg13 autophagy related 13 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:98,101,552...98,136,743 		JBrowse link
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within
involved_in 		ISO
IEA 		PR:Q80W47 (PMID:24954904)
(PMID:32960676)
GO_REF:0000107 		RGD
Ensembl		 PMID:24954904 PMID:32960676 GO_REF:0000107 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:95,869,865...95,905,357 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IEA 		(PMID:33773106)
GO_REF:0000107 		RGD
Ensembl		 PMID:33773106 GO_REF:0000107 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:101,726,782...101,761,622 		JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO
IEA 		(PMID:33773106)
GO_REF:0000107 		RGD
Ensembl		 PMID:33773106 GO_REF:0000107 NCBI chr 8:19,807,733...19,817,321
Ensembl chr 8:28,083,936...28,093,491 		JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:84,126,071...84,136,666 		JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:11,678,299...11,686,079 		JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) RGD PMID:33773106 NCBI chr 2:171,623,668...172,202,576
Ensembl chr 2:173,921,747...174,500,527 		JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within ISO
IEA 		(PMID:23455425)
GO_REF:0000107 		RGD
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:163,587,463...163,618,495 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO
IEA 		(PMID:23455425)
GO_REF:0000107 		RGD
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chr 6:132,096,992...132,156,702
Ensembl chr 6:137,918,051...137,977,767 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 acts_upstream_of_or_within ISO
IEA 		(PMID:24098492)
GO_REF:0000107 		RGD
Ensembl		 PMID:24098492 GO_REF:0000107 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:22,119,792...22,203,539 		JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in IEA
ISO 		GO_REF:0000107
(PMID:32960676) 		Ensembl
RGD		 PMID:32960676 GO_REF:0000107 NCBI chr 2:135,528,116...135,538,719
Ensembl chr 2:137,678,978...137,689,581 		JBrowse link
G Stx17 syntaxin 17 acts_upstream_of_or_within ISO
IEA 		(PMID:23455425)
GO_REF:0000107 		RGD
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:67,241,727...67,302,218 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:17,448,207...17,454,117 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:107,097,755...107,127,831 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000117 		GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000117 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:95,042,441...95,079,293 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA
ISS 		(PMID:28561066)
GO_REF:0000117
GO_REF:0000107
PR:Q8C0J2 (PMID:24954904)
GO_REF:0000033
GO_REF:0000024 		RGD
UniProt
Ensembl
GO_Central		 PMID:24954904 PMID:28561066 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:17,024,878...17,071,406 		JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:62,727,291...62,828,629 		JBrowse link
G Chek2 checkpoint kinase 2 involved_in ISO
IEA 		(PMID:37943659)
GO_REF:0000107 		RGD
Ensembl		 PMID:37943659 GO_REF:0000107 NCBI chr12:45,788,823...45,821,382
Ensembl chr12:51,449,140...51,480,667 		JBrowse link
G Efnb1 ephrin B1 acts_upstream_of_positive_effect ISO
IEA 		(PMID:33280498)
GO_REF:0000107 		RGD
Ensembl		 PMID:33280498 GO_REF:0000107 NCBI chr  X:64,257,351...64,270,158
Ensembl chr  X:68,297,492...68,349,546 		JBrowse link
G Ephb2 Eph receptor B2 acts_upstream_of_positive_effect ISO
IEA 		(PMID:33280498)
GO_REF:0000107 		RGD
Ensembl		 PMID:33280498 GO_REF:0000107 NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:154,179,065...154,360,615 		JBrowse link
G Ift20 intraflagellar transport 20 involved_in ISO
IEA 		(PMID:24089209)
GO_REF:0000107 		RGD
Ensembl		 PMID:24089209 GO_REF:0000107 NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,930,681...63,936,172 		JBrowse link
G Ift88 intraflagellar transport 88 involved_in ISO (PMID:24089209) RGD PMID:24089209 NCBI chr15:35,685,678...35,786,875
Ensembl chr15:35,688,927...35,781,634 		JBrowse link
G Mtmr3 myotubularin related protein 3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:25578879) 		Ensembl
RGD		 PMID:25578879 GO_REF:0000107 NCBI chr14:79,340,523...79,460,947
Ensembl chr14:83,564,065...83,684,473 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO
IEA 		(PMID:23524951)
GO_REF:0000107 		RGD
Ensembl		 PMID:23524951 GO_REF:0000107 NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:164,167,928...164,277,435 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO
IEA 		(PMID:25578879)
GO_REF:0000107 		RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr 9:74,057,488...74,151,610
Ensembl chr 9:74,057,514...74,151,610 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in ISO (PMID:20545908) RGD PMID:20545908 NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:211,835,073...211,843,337
Ensembl chr  X:211,835,073...211,843,337 		JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISO
IEA
ISS 		(PMID:27334615)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:27334615 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:49,766,340...49,791,434
Ensembl chr 5:54,562,570...54,587,637 		JBrowse link
G Rnf186 ring finger protein 186 acts_upstream_of_positive_effect ISO
IEA 		(PMID:33280498)
GO_REF:0000107 		RGD
Ensembl		 PMID:33280498 GO_REF:0000107 NCBI chr 5:151,210,492...151,211,716
Ensembl chr 5:156,493,752...156,494,978 		JBrowse link
G Rnf5 ring finger protein 5 acts_upstream_of_or_within ISO
IEA 		MGI:3775796 (PMID:23093945)
GO_REF:0000107 		RGD
Ensembl		 PMID:23093945 GO_REF:0000107 NCBI chr20:4,145,539...4,147,985
Ensembl chr20:4,150,138...4,152,591 		JBrowse link
G Tbc1d12 TBC1 domain family, member 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:236,603,597...236,685,859
Ensembl chr 1:246,015,994...246,098,241 		JBrowse link
G Tbc1d14 TBC1 domain family, member 14 involved_in ISO
IBA
IEA 		(PMID:22613832)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:22613832 GO_REF:0000033 GO_REF:0000107 NCBI chr14:74,172,652...74,272,182
Ensembl chr14:78,397,355...78,496,865 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:20529957) RGD PMID:20529957 NCBI chr  X:17,853,086...17,856,505
Ensembl chr  X:21,229,197...21,232,268 		JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in IMP
IEA
IBA
ISO 		GO_REF:0000107
GO_REF:0000033
(PMID:22186024) 		Ensembl
GO_Central
RGD		 PMID:22186024 PMID:22186024 GO_REF:0000033 GO_REF:0000107, RGD:13442482 NCBI chr 5:153,292,722...153,312,143
Ensembl chr 5:158,575,749...158,595,156 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO
IEA 		(PMID:25878248)
GO_REF:0000107 		RGD
Ensembl		 PMID:25878248 GO_REF:0000107 NCBI chr 1:190,586,649...190,600,034
Ensembl chr 1:190,586,650...190,597,929 		JBrowse link
G Dnajc16 DnaJ heat shock protein family (Hsp40) member C16 involved_in ISS
ISO 		GO_REF:0000024
(PMID:32492081) 		UniProt
RGD		 PMID:32492081 GO_REF:0000024 NCBI chr 5:154,073,372...154,106,246
Ensembl chr 5:159,361,314...159,389,298 		JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2 interacting protein 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:193,708,164...193,725,348
Ensembl chr 1:203,137,778...203,154,962 		JBrowse link
G Irgq immunity-related GTPase Q involved_in ISO (PMID:39481378) RGD PMID:39481378 NCBI chr 1:80,123,925...80,131,881
Ensembl chr 1:89,239,205...89,259,799 		JBrowse link
G Retreg1 reticulophagy regulator 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:76,335,609...76,474,817
Ensembl chr 2:78,066,031...78,225,356 		JBrowse link
G Retreg2 reticulophagy regulator family member 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:84,088,935...84,095,072
Ensembl chr 9:84,088,964...84,094,837 		JBrowse link
G Retreg3 reticulophagy regulator family member 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:86,028,767...86,052,575
Ensembl chr10:86,529,055...86,552,990 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO
IEA 		(PMID:22020285)
GO_REF:0000107 		RGD
Ensembl		 PMID:22020285 GO_REF:0000107 NCBI chr12:9,635,009...9,726,520
Ensembl chr12:14,749,043...14,840,273 		JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO
IEA 		MGI:6356543 (PMID:20810658), (PMID:27358407)
GO_REF:0000107 		RGD
Ensembl		 PMID:20810658 PMID:27358407 GO_REF:0000107 NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,754,644...15,761,659 		JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO
IEA 		(PMID:23023224)
GO_REF:0000107 		RGD
Ensembl		 PMID:23023224 GO_REF:0000107 NCBI chr19:13,405,482...13,440,384
Ensembl chr19:13,411,157...13,446,110 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20668
    cellular process 19605
      process utilizing autophagic mechanism 604
        autophagy 604
          macroautophagy 366
            autophagosome organization 161
              autophagosome assembly + 152
              autophagosome membrane disassembly 0
              regulation of autophagosome size + 4
Path 2
Term Annotations click to browse term
  biological_process 20668
    cellular process 19605
      cellular component organization or biogenesis 7219
        cellular component organization 6928
          organelle organization 3741
            vacuole organization 260
              autophagosome organization 161
                autophagosome assembly + 152
                autophagosome membrane disassembly 0
                regulation of autophagosome size + 4
paths to the root