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Pathways

ONTOLOGY REPORT - ANNOTATIONS


Term:autophagosome organization
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Accession:GO:1905037 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an autophagosome.
Synonyms:exact_synonym: autophagic vacuole organization
 related_synonym: initial autophagic vacuole organization



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autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO
IEA
(PMID:22186024)
GO_REF:0000107
RGD
Ensembl
PMID:22186024 GO_REF:0000107 NCBI chr 5:153,292,722...153,312,143
Ensembl chr 5:158,575,749...158,595,156
JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO
IEA
(PMID:23707074)
GO_REF:0000107
RGD
Ensembl
PMID:23707074 GO_REF:0000107 NCBI chr 2:174,609,437...174,615,457
Ensembl chr 2:176,907,154...176,916,985
JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha acts_upstream_of_or_within ISO MGI:2685045 (PMID:24098492) RGD PMID:24098492 NCBI chr 1:170,577,942...170,684,353
Ensembl chr 1:180,012,248...180,117,773
JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta acts_upstream_of_or_within ISO
IEA
MGI:1203729 (PMID:24098492)
GO_REF:0000107
RGD
Ensembl
PMID:24098492 GO_REF:0000107 NCBI chr13:44,494,673...44,555,663
Ensembl chr13:47,047,127...47,107,725
JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO
IEA
(PMID:25365221)
GO_REF:0000107
RGD
Ensembl
PMID:25365221 GO_REF:0000107 NCBI chr 3:109,007,658...109,072,904
Ensembl chr 3:129,461,477...129,526,742
JBrowse link
G Zfyve26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within ISO
IEA
(PMID:25365221)
GO_REF:0000107
RGD
Ensembl
PMID:25365221 GO_REF:0000107 NCBI chr 6:103,764,864...103,828,520
Ensembl chr 6:103,765,510...103,828,463
JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in
acts_upstream_of_or_within
ISO
IEA
IBA
(PMID:20921139), (PMID:25215947)
(PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:28890335), (PMID:30778222), (PMID:33637724)
GO_REF:0000107
GO_REF:0000033
(PMID:23524951)
RGD
Ensembl
GO_Central
PMID:20713597 PMID:20921139 PMID:23202584 PMID:23392225 PMID:23524951 More... GO_REF:0000033 GO_REF:0000107 NCBI chr 3:98,156,626...98,345,876
Ensembl chr 3:98,156,652...98,345,872
JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in ISO
IEA
ISS
(PMID:29180427)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:29180427 GO_REF:0000024 GO_REF:0000107 NCBI chr12:17,049,766...17,055,954
Ensembl chr12:22,163,466...22,171,731
JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within ISO MGI:4460281 (PMID:30930081) RGD PMID:30930081 NCBI chr12:12,093,834...12,109,043
Ensembl chr12:17,207,315...17,222,467
JBrowse link
G Atg10 autophagy related 10 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:16963840)
(PMID:23202584)
GO_REF:0000033
RGD
GO_Central
PMID:16963840 PMID:23202584 GO_REF:0000033 NCBI chr 2:22,109,304...22,398,313
Ensembl chr 2:23,844,482...24,133,368
JBrowse link
G Atg101 autophagy related 101 involved_in ISO
IBA
(PMID:19225151), (PMID:19597335)
GO_REF:0000033
RGD
GO_Central
PMID:19225151 PMID:19597335 GO_REF:0000033 NCBI chr 7:132,398,477...132,407,643
Ensembl chr 7:134,272,847...134,286,379
JBrowse link
G Atg12 autophagy related 12 involved_in IEA
IBA
ISO
GO_REF:0000002
GO_REF:0000033
(PMID:11266458)
InterPro
GO_Central
RGD
PMID:11266458 GO_REF:0000002 GO_REF:0000033 NCBI chr18:39,452,247...39,462,424
Ensembl chr18:41,635,835...41,649,261
JBrowse link
G Atg13 autophagy related 13 involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:19211835), (PMID:19225151)
(PMID:19211835), (PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:28890335), (PMID:30778222), (PMID:33637724)
GO_REF:0000107
GO_REF:0000002
(PMID:19225151), (PMID:19258318)
RGD
Ensembl
InterPro
PMID:19211835 PMID:19225151 PMID:19258318 PMID:20713597 PMID:23202584 More... GO_REF:0000002 GO_REF:0000107 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:98,101,552...98,136,743
JBrowse link
G Atg14 autophagy related 14 involved_in
acts_upstream_of_or_within
ISO
IEA
IBA
(PMID:19270696), (PMID:20713597)
(PMID:25891078), (PMID:33637724)
GO_REF:0000107
GO_REF:0000033
RGD
Ensembl
GO_Central
PMID:19270696 PMID:20713597 PMID:25891078 PMID:33637724 GO_REF:0000033 GO_REF:0000107 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:23,275,457...23,306,815
JBrowse link
G Atg16l1 autophagy related 16-like 1 involved_in
acts_upstream_of_or_within
ISO
IEA
IBA
(PMID:30778222)
(PMID:23202584)
GO_REF:0000117
GO_REF:0000107
GO_REF:0000002
(PMID:11266458)
GO_REF:0000033
RGD
UniProt
Ensembl
InterPro
GO_Central
PMID:11266458 PMID:23202584 PMID:30778222 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:95,869,865...95,905,357
JBrowse link
G Atg16l2 autophagy related 16-like 2 NOT|involved_in ISO (PMID:22082872)
(PMID:11266458)
RGD PMID:11266458 PMID:22082872 NCBI chr 1:155,687,386...155,703,419
Ensembl chr 1:165,102,936...165,115,473
JBrowse link
G Atg2a autophagy related 2A involved_in ISO
IEA
IBA
(PMID:28561066)
GO_REF:0000107
GO_REF:0000033
RGD
Ensembl
GO_Central
PMID:28561066 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:212,971,844...212,991,528
JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:130,286,979...130,357,109
Ensembl chr 6:130,286,986...130,357,109
JBrowse link
G Atg3 autophagy related 3 involved_in
acts_upstream_of_or_within
ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:20723759), (PMID:24747438)
(PMID:21220506)
GO_REF:0000033
GO_REF:0000107
(PMID:33446636)
UniProt
RGD
GO_Central
Ensembl
PMID:20723759 PMID:21220506 PMID:24747438 PMID:33446636 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr11:55,624,914...55,653,249
Ensembl chr11:69,121,952...69,159,280
JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in ISO
IEA
IBA
(PMID:21177865)
GO_REF:0000107
GO_REF:0000033
RGD
Ensembl
GO_Central
PMID:21177865 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:104,665,345...104,765,271
Ensembl chr  X:109,453,689...109,553,760
JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in
acts_upstream_of_or_within
ISO
IEA
IBA
(PMID:21177865)
(PMID:24290141)
GO_REF:0000107
(PMID:25578879)
GO_REF:0000033
RGD
Ensembl
GO_Central
PMID:21177865 PMID:24290141 PMID:25578879 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:101,726,782...101,761,622
JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in
acts_upstream_of_or_within
ISO
IEA
IBA
(PMID:21177865)
(PMID:24290141)
GO_REF:0000107
GO_REF:0000033
RGD
Ensembl
GO_Central
PMID:21177865 PMID:24290141 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:113,867,218...113,935,534
Ensembl chr 5:118,982,918...119,052,695
JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:21177865)
(PMID:24290141)
GO_REF:0000033
RGD
GO_Central
PMID:21177865 PMID:24290141 GO_REF:0000033 NCBI chr 8:19,807,733...19,817,321
Ensembl chr 8:28,083,936...28,093,491
JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within
IMP
IEA
IBA
ISO
GO_REF:0000117
GO_REF:0000033
(PMID:11266458)
(PMID:23704209)
GO_REF:0000107
(PMID:23202584)
UniProt
GO_Central
RGD
Ensembl
PMID:11266458 PMID:23202584 PMID:23704209 PMID:16420522 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117, RGD:1643189 NCBI chr20:47,798,217...47,889,216
Ensembl chr20:49,380,813...49,471,821
JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within
ISO
IBA
IEA
(PMID:22170151)
(PMID:33446636), (PMID:37943659)
GO_REF:0000033
(PMID:20080761)
(PMID:23704209)
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:20080761 PMID:22170151 PMID:23704209 PMID:33446636 PMID:37943659 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:149,391,390...149,598,319
JBrowse link
G Atg9a autophagy related 9A acts_upstream_of_or_within
involved_in
ISO
ISS
(PMID:15755735), (PMID:22456507)
MGI:4417824 (PMID:22456507), (PMID:23402761)
GO_REF:0000024
(PMID:29180427), (PMID:29437695), (PMID:32513819), (PMID:33468622)
RGD
UniProt
PMID:15755735 PMID:22456507 PMID:23402761 PMID:29180427 PMID:29437695 More... GO_REF:0000024 NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:84,126,071...84,136,666
JBrowse link
G Atg9b autophagy related 9B acts_upstream_of_or_within ISO
IEA
(PMID:15755735)
GO_REF:0000107
RGD
Ensembl
PMID:15755735 GO_REF:0000107 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:11,678,299...11,686,079
JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO (PMID:22170151), (PMID:37943659) RGD PMID:22170151 PMID:37943659 NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:62,727,291...62,828,629
JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISS
ISO
IBA
GO_REF:0000024
(PMID:28890335)
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:28890335 GO_REF:0000024 GO_REF:0000033 NCBI chr12:34,072,710...34,122,142
Ensembl chr12:39,733,458...39,782,934
JBrowse link
G Bag3 BAG cochaperone 3 involved_in IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr 1:183,103,038...183,126,862
Ensembl chr 1:192,475,828...192,557,280
JBrowse link
G Becn1 beclin 1 acts_upstream_of_or_within
involved_in
IMP
ISO
IEA
IBA
ISS
(PMID:33637724)
GO_REF:0000107
(PMID:23332761)
GO_REF:0000033
(PMID:25891078)
GO_REF:0000024
RGD
Ensembl
GO_Central
UniProt
PMID:23332761 PMID:25891078 PMID:33637724 PMID:16420522 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107, RGD:1643189 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,731,650...86,747,002
JBrowse link
G Becn2 beclin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:87,842,980...87,892,410
Ensembl chr13:90,375,186...90,378,488
JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 1:244,210,299...244,380,126
Ensembl chr 1:254,159,124...254,328,357
JBrowse link
G Chek2 checkpoint kinase 2 acts_upstream_of_or_within ISO (PMID:22170151), (PMID:37943659) RGD PMID:22170151 PMID:37943659 NCBI chr12:45,788,823...45,821,382
Ensembl chr12:51,449,140...51,480,667
JBrowse link
G Csnk1a1 casein kinase 1, alpha 1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr18:55,017,049...55,050,184
Ensembl chr18:57,287,412...57,320,538
JBrowse link
G Ctsd cathepsin D acts_upstream_of_or_within ISO
IEA
(PMID:15452145)
GO_REF:0000107
RGD
Ensembl
PMID:15452145 GO_REF:0000107 NCBI chr 1:197,527,467...197,539,343
Ensembl chr 1:206,956,944...206,968,821
JBrowse link
G Cul1 cullin 1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 4:76,551,952...76,625,830
Ensembl chr 4:77,551,787...77,621,760
JBrowse link
G Deptor DEP domain containing MTOR-interacting protein acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 7:86,514,859...86,668,817
Ensembl chr 7:88,404,620...88,574,041
JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO
IEA
IBA
(PMID:21072319)
GO_REF:0000107
GO_REF:0000033
RGD
Ensembl
GO_Central
PMID:21072319 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:198,777,323...198,856,497
JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in ISO
IBA
(PMID:23182941)
GO_REF:0000033
RGD
GO_Central
PMID:23182941 GO_REF:0000033 NCBI chr10:57,794,072...57,795,671
Ensembl chr10:58,292,470...58,298,885
JBrowse link
G Ep300 E1A binding protein p300 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 7:114,987,857...115,058,652
Ensembl chr 7:114,946,982...115,058,574
JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO
IEA
MGI:2182627 (PMID:24430976)
GO_REF:0000107
RGD
Ensembl
PMID:24430976 GO_REF:0000107 NCBI chr 1:5,727,111...5,845,338
Ensembl chr 1:7,547,342...7,669,604
JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:54,714,777...54,718,099
Ensembl chr10:55,212,075...55,216,154
JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:162,980,309...162,989,452
Ensembl chr 4:164,666,246...164,674,578
JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:39,910,572...39,921,408
Ensembl chr19:56,819,791...56,830,660
JBrowse link
G Gabarapl3 GABA type A receptor associated protein like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:89,246,175...89,247,132 JBrowse link
G Gabarapl4 gamma-aminobutyric acid receptor associated protein like 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:55,052,756...55,053,109 JBrowse link
G Ifgga2l1 interferon-gamma-inducible GTPase 2 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:53,761,118...53,770,183
Ensembl chr18:55,957,699...56,046,772
JBrowse link
G Ifgga2l2 interferon-gamma-inducible GTPase 2 like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:53,870,838...53,890,135
Ensembl chr18:56,141,275...56,160,722
JBrowse link
G Ifgga4l interferon-gamma-inducible GTPase 4 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:53,838,426...53,854,858
Ensembl chr18:56,108,872...56,125,302
JBrowse link
G Ifi47 interferon gamma inducible protein 47 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:33,297,618...33,305,248
Ensembl chr10:33,776,399...33,806,372
JBrowse link
G Igtp interferon gamma induced GTPase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:42,875,047...42,882,866
Ensembl chr10:42,876,790...42,882,858
JBrowse link
G Irgm immunity-related GTPase M involved_in
acts_upstream_of_or_within
ISO
IEA
IBA
(PMID:16888103)
(PMID:28890335)
GO_REF:0000107
GO_REF:0000033
RGD
Ensembl
GO_Central
PMID:16888103 PMID:28890335 GO_REF:0000033 GO_REF:0000107 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,732,961...33,743,228
JBrowse link
G Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 1:156,272,116...156,277,687
Ensembl chr 1:165,684,091...165,703,178
JBrowse link
G LOC134483037 interferon-inducible GTPase 1-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO
IEA
IBA
IDA
(PMID:24290141)
GO_REF:0000107
GO_REF:0000033
PMID:11060023
RGD
Ensembl
GO_Central
PMID:24290141 PMID:11060023 GO_REF:0000033 GO_REF:0000107, RGD:8554284 NCBI chr 3:143,783,024...143,784,670
Ensembl chr 3:164,243,093...164,244,850
JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO
IBA
(PMID:37943659)
GO_REF:0000033
RGD
GO_Central
PMID:37943659 GO_REF:0000033 NCBI chr19:49,665,795...49,673,655
Ensembl chr19:66,574,407...66,584,358
Ensembl chr16:66,574,407...66,584,358
JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 1:181,366,646...181,372,863
Ensembl chr 1:190,797,185...190,803,411
JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of ISO MGI:2450997 (PMID:23695157) RGD PMID:23695157 NCBI chr 6:488,923...506,882
Ensembl chr 6:6,234,922...6,252,961
JBrowse link
G Mtor mechanistic target of rapamycin kinase acts_upstream_of_or_within ISO (PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:28890335), (PMID:30778222), (PMID:33637724) RGD PMID:20713597 PMID:23202584 PMID:23392225 PMID:23524951 PMID:25891078 More... NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:164,167,928...164,277,435
JBrowse link
G Nsfl1c NSFL1 cofactor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:139,978,306...140,002,876
Ensembl chr 3:160,438,708...160,463,228
JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO
IEA
(PMID:23455425)
GO_REF:0000107
RGD
Ensembl
PMID:23455425 GO_REF:0000107 NCBI chr 6:132,096,992...132,156,702
Ensembl chr 6:137,918,051...137,977,767
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in
acts_upstream_of_or_within
IMP
IEA
ISO
IBA
GO_REF:0000117
GO_REF:0000107
(PMID:24098492)
GO_REF:0000033
(PMID:33637724)
UniProt
Ensembl
RGD
GO_Central
PMID:24098492 PMID:33637724 PMID:12453151 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117, RGD:2303129 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:22,119,792...22,203,539
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 2:54,240,298...54,275,978
Ensembl chr 2:55,967,351...56,003,450
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO
IEA
MGI:2149116 (PMID:15452145)
GO_REF:0000107
RGD
Ensembl
PMID:15452145 GO_REF:0000107 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:109,060,352...109,106,189
JBrowse link
G Rab19 RAB19, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:68,157,159...68,166,889
Ensembl chr 4:69,123,924...69,134,383
JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO
IBA
ISS
(PMID:22939626)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:22939626 GO_REF:0000024 GO_REF:0000033 NCBI chr14:94,422,219...94,448,799
Ensembl chr14:98,623,635...98,661,582
JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:211,835,073...211,843,337
Ensembl chr  X:211,835,073...211,843,337
JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO
IEA
IBA
(PMID:22452336)
GO_REF:0000107
GO_REF:0000033
RGD
Ensembl
GO_Central
PMID:22452336 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:43,440,047...43,463,327
Ensembl chr 9:43,440,273...43,463,325
JBrowse link
G Rab33a RAB33A, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:127,694,219...127,706,378
Ensembl chr  X:132,572,148...132,584,254
JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in
acts_upstream_of_or_within
ISO
IBA
IEA
(PMID:18448665)
(PMID:23202584), (PMID:30778222)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:18448665 PMID:23202584 PMID:30778222 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:135,528,116...135,538,719
Ensembl chr 2:137,678,978...137,689,581
JBrowse link
G Rab43 RAB43, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:120,249,650...120,269,174
Ensembl chr 4:121,806,992...121,854,561
JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO
IEA
(PMID:19956673)
GO_REF:0000107
RGD
Ensembl
PMID:19956673 GO_REF:0000107 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:121,983,938...122,064,185
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in
acts_upstream_of_or_within
ISO
IEA
IBA
(PMID:19225151), (PMID:28890335)
(PMID:23202584), (PMID:30778222)
GO_REF:0000117
GO_REF:0000107
GO_REF:0000002
(PMID:19225151), (PMID:19258318)
GO_REF:0000033
(PMID:23392225)
RGD
UniProt
Ensembl
InterPro
GO_Central
PMID:19225151 PMID:19258318 PMID:23202584 PMID:23392225 PMID:28890335 More... GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:17,948,522...18,012,434
JBrowse link
G Rbx1 ring-box 1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 7:112,976,863...113,001,051
Ensembl chr 7:114,870,972...114,881,191
JBrowse link
G RGD1309362 similar to interferon-inducible GTPase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr18:55,943,264...55,994,435 JBrowse link
G RGD1559575 similar to novel protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:33,252,146...33,276,364
Ensembl chr10:33,753,267...33,776,789
JBrowse link
G Rheb Ras homolog, mTORC1 binding acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 4:10,278,970...10,320,160
Ensembl chr 4:11,012,643...11,053,931
JBrowse link
G Rps6kb1 ribosomal protein S6 kinase B1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr10:71,323,777...71,367,908
Ensembl chr10:71,815,614...71,865,238
JBrowse link
G Rptor regulatory associated protein of MTOR, complex 1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr10:104,878,487...105,176,986
Ensembl chr10:105,376,943...105,675,413
JBrowse link
G Rraga Ras-related GTP binding A acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 5:101,113,341...101,114,936
Ensembl chr 5:106,158,853...106,160,504
JBrowse link
G Rragc Ras-related GTP binding C acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 5:136,148,239...136,167,773
Ensembl chr 5:141,433,040...141,452,548
JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in ISO
IEA
IBA
(PMID:26416964)
GO_REF:0000107
GO_REF:0000033
RGD
Ensembl
GO_Central
PMID:26416964 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:75,702,937...75,727,719
Ensembl chr 9:83,154,445...83,172,897
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 8:119,390,207...119,475,863
Ensembl chr 8:119,390,207...119,475,863
JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
IBA
GO_REF:0000024
(PMID:23202584)
GO_REF:0000107
(PMID:30568238)
GO_REF:0000033
(PMID:30568238), (PMID:30842662), (PMID:37535724)
UniProt
RGD
Ensembl
GO_Central
PMID:23202584 PMID:30568238 PMID:30842662 PMID:37535724 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr18:27,606,196...27,612,544
Ensembl chr18:27,606,196...27,611,947
JBrowse link
G Stx12 syntaxin 12 involved_in ISO
IBA
(PMID:24095276)
GO_REF:0000033
RGD
GO_Central
PMID:24095276 GO_REF:0000033 NCBI chr 5:145,062,978...145,092,423
Ensembl chr 5:150,334,836...150,376,346
JBrowse link
G Syk spleen associated tyrosine kinase acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr17:12,604,615...12,678,437
Ensembl chr17:12,756,493...12,813,278
JBrowse link
G Synpo2 synaptopodin 2 involved_in IMP PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chr 2:211,217,099...211,371,267
Ensembl chr 2:213,900,868...214,055,844
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO
IEA
(PMID:23908015)
GO_REF:0000107
RGD
Ensembl
PMID:23908015 GO_REF:0000107 NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:210,556,270...210,568,033
JBrowse link
G Tmem41b transmembrane protein 41B involved_in ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
(PMID:30093494), (PMID:30126924), (PMID:30933966)
UniProt
Ensembl
GO_Central
RGD
PMID:30093494 PMID:30126924 PMID:30933966 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:164,012,585...164,026,967
Ensembl chr 1:173,447,367...173,461,597
JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:24,253,986...24,272,250
Ensembl chr 5:29,051,264...29,069,484
JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in ISO
IBA
IEA
ISS
(PMID:19056683)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:19056683 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:143,881,427...143,890,104
Ensembl chr 3:164,343,205...164,350,225
JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in
acts_upstream_of_or_within
ISO (PMID:23524951)
(PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:28890335), (PMID:30778222), (PMID:33637724)
RGD PMID:20713597 PMID:23202584 PMID:23392225 PMID:23524951 PMID:25891078 More... NCBI chr 3:108,418,537...108,443,330
Ensembl chr 3:108,418,513...108,443,328
JBrowse link
G Trim21 tripartite motif-containing 21 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 1:156,964,896...156,987,504
Ensembl chr 1:166,376,829...166,399,449
JBrowse link
G Trim32 tripartite motif-containing 32 involved_in
acts_upstream_of_or_within
ISO (PMID:37943659)
(PMID:22170151), (PMID:37943659)
RGD PMID:22170151 PMID:37943659 NCBI chr 5:79,005,139...79,016,615
Ensembl chr 5:84,014,803...84,042,748
JBrowse link
G Ube3c ubiquitin protein ligase E3C acts_upstream_of_or_within ISO (PMID:33637724) RGD PMID:33637724 NCBI chr 4:5,648,932...5,749,922
Ensembl chr 4:6,323,831...6,424,845
JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO
IBA
IEA
(PMID:20529957)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:20529957 GO_REF:0000033 GO_REF:0000107 NCBI chr17:6,439,002...6,477,096
Ensembl chr17:6,444,124...6,482,499
JBrowse link
G Ubqln2 ubiquilin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,853,086...17,856,505
Ensembl chr  X:21,229,197...21,232,268
JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:27,884,364...27,912,767
Ensembl chr 6:33,603,804...33,632,202
Ensembl chr20:33,603,804...33,632,202
JBrowse link
G Ubxn2b UBX domain protein 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:19,303,634...19,333,181
Ensembl chr 5:24,101,209...24,129,199
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in
acts_upstream_of_or_within
ISO
IEA
IBA
(PMID:19225151), (PMID:28890335)
(PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:30778222), (PMID:33637724)
GO_REF:0000107
GO_REF:0000033
(PMID:19225151), (PMID:19258318)
RGD
Ensembl
GO_Central
PMID:19225151 PMID:19258318 PMID:20713597 PMID:23202584 PMID:23392225 More... GO_REF:0000033 GO_REF:0000107 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:51,511,492...51,537,746
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,951,038...47,029,844
JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:57,992,396...58,000,220
Ensembl chr 8:66,888,788...66,895,379
JBrowse link
G Usp7 ubiquitin specific peptidase 7 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr10:6,880,684...6,925,355
Ensembl chr10:7,367,604...7,432,013
JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO
IBA
IEA
ISS
(PMID:28890335), (PMID:30093494), (PMID:30933966)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:28890335 PMID:30093494 PMID:30933966 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:71,405,058...71,505,045
Ensembl chr10:71,903,227...72,002,319
JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
IEA
ISS
(PMID:28561066)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:28561066 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:17,448,207...17,454,117
JBrowse link
G Wdr45b WD repeat domain 45B involved_in ISO
IEA
(PMID:28561066)
GO_REF:0000107
RGD
Ensembl
PMID:28561066 GO_REF:0000107 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:107,097,755...107,127,831
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO
IEA
(PMID:28561066)
GO_REF:0000107
RGD
Ensembl
PMID:28561066 GO_REF:0000107 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:95,042,441...95,079,293
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:20505359), (PMID:28561066), (PMID:28890335)
UniProt
Ensembl
RGD
PMID:20505359 PMID:28561066 PMID:28890335 GO_REF:0000024 GO_REF:0000107 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:17,024,878...17,071,406
JBrowse link
G Zranb1 zinc finger RANBP2-type containing 1 acts_upstream_of_or_within ISO (PMID:33637724) RGD PMID:33637724 NCBI chr 1:187,725,354...187,780,129
Ensembl chr 1:197,155,459...197,209,384
JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO
IEA
(PMID:22020285)
GO_REF:0000107
RGD
Ensembl
PMID:22020285 GO_REF:0000107 NCBI chr12:9,635,009...9,726,520
Ensembl chr12:14,749,043...14,840,273
JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 acts_upstream_of_or_within ISO
IEA
MGI:2683833 (PMID:27994061)
GO_REF:0000107
RGD
Ensembl
PMID:27994061 GO_REF:0000107 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,731,650...86,747,002
JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (PMID:23918802) RGD PMID:23918802 NCBI chr20:3,924,263...3,941,238
Ensembl chr20:3,924,263...3,941,384
JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in ISO
IEA
ISS
(PMID:25495476)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
GO_Central
PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:36,544,462...36,589,684
Ensembl chr 8:44,733,300...44,784,097
JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:25495476)
GO_Central
Ensembl
RGD
PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:16,654,572...16,694,628
Ensembl chr 6:22,406,632...22,447,041
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO
IEA
(PMID:23916833)
GO_REF:0000107
RGD
Ensembl
PMID:23916833 GO_REF:0000107 NCBI chr 7:122,826,696...122,987,711
Ensembl chr 7:124,706,080...124,867,239
JBrowse link
G Mtm1 myotubularin 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2450997 (PMID:23695157)
GO_Central
RGD
PMID:23695157 GO_REF:0000033 NCBI chr 6:488,923...506,882
Ensembl chr 6:6,234,922...6,252,961
JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:20181828)
UniProt
Ensembl
RGD
PMID:20181828 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:181,213,292...181,215,327
Ensembl chr 1:190,643,867...190,645,901
JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO
IBA
IEA
ISS
(PMID:25484098)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
PMID:25484098 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:54,718,663...54,722,784
Ensembl chr10:55,217,351...55,221,471
JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO
IEA
(PMID:19279012)
GO_REF:0000107
RGD
Ensembl
PMID:19279012 GO_REF:0000107 NCBI chr 5:150,530,523...150,542,635
Ensembl chr 5:155,813,838...155,825,950
JBrowse link
G Scfd1 sec1 family domain containing 1 involved_in ISO
IEA
(PMID:21242315)
GO_REF:0000107
RGD
Ensembl
PMID:21242315 GO_REF:0000107 NCBI chr 6:68,795,810...68,874,076
Ensembl chr 6:74,531,276...74,633,750
JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 2:185,500,029...185,520,811
Ensembl chr 2:188,188,751...188,211,600
JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO
IEA
(PMID:28195531)
GO_REF:0000107
RGD
Ensembl
PMID:28195531 GO_REF:0000107 NCBI chr10:45,457,962...45,465,101
Ensembl chr10:45,957,104...45,968,389
JBrowse link
G Tmem39a transmembrane protein 39a involved_in ISO
IEA
IBA
ISS
(PMID:31806350)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024
RGD
Ensembl
GO_Central
UniProt
PMID:31806350 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr11:62,160,631...62,189,964
Ensembl chr11:75,666,154...75,695,486
JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in ISO
IEA
(PMID:30952800), (PMID:31271352)
GO_REF:0000107
RGD
Ensembl
PMID:30952800 PMID:31271352 GO_REF:0000107 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:212,971,844...212,991,528
JBrowse link
G Atg7 autophagy related 7 IMP RGD PMID:33372336 RGD:407571673 NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:149,391,390...149,598,319
JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:62,727,291...62,828,629
JBrowse link
G Becn1 beclin 1 IMP RGD PMID:25561470 RGD:11561937 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,731,650...86,747,002
JBrowse link
G Chek2 checkpoint kinase 2 acts_upstream_of_or_within ISO (PMID:37943659) RGD PMID:37943659 NCBI chr12:45,788,823...45,821,382
Ensembl chr12:51,449,140...51,480,667
JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO
IEA
(PMID:21072319)
GO_REF:0000107
RGD
Ensembl
PMID:21072319 GO_REF:0000107 NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:198,777,323...198,856,497
JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO
IEA
(PMID:25484098)
GO_REF:0000107
RGD
Ensembl
PMID:25484098 GO_REF:0000107 NCBI chr 3:16,223,367...16,264,261
Ensembl chr 3:36,621,042...36,661,825
JBrowse link
G Moap1 modulator of apoptosis 1 involved_in ISO (PMID:33783314) RGD PMID:33783314 NCBI chr 6:121,882,565...121,884,500
Ensembl chr 6:127,613,488...127,669,324
JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr17:81,496,669...81,668,180
Ensembl chr17:86,405,081...86,576,430
JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr10:82,706,016...82,734,938
Ensembl chr10:83,197,287...83,231,292
JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr 7:63,020,004...63,035,086
Ensembl chr 7:64,905,328...64,920,373
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
ISS
IEA
IBA
(PMID:25495476)
GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
RGD
GO_Central
Ensembl
PMID:25495476 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:39,355,698...39,429,154
Ensembl chr13:41,908,051...41,981,611
JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:25495476)
GO_REF:0000107
GO_Central
RGD
Ensembl
PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr13:99,288,984...99,362,817
Ensembl chr13:99,288,647...99,361,053
JBrowse link
G Ralb RAS like proto-oncogene B involved_in ISO
IEA
(PMID:24056301)
GO_REF:0000107
RGD
Ensembl
PMID:24056301 GO_REF:0000107 NCBI chr13:30,588,036...30,624,199
Ensembl chr13:33,140,835...33,176,998
JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 involved_in ISO
IEA
(PMID:21068542)
GO_REF:0000107
RGD
Ensembl
PMID:21068542 GO_REF:0000107 NCBI chr 2:233,750,838...233,784,817
Ensembl chr 2:236,410,436...236,445,140
JBrowse link
G Snx18 sorting nexin 18 involved_in ISO
IEA
(PMID:29437695)
GO_REF:0000107
RGD
Ensembl
PMID:29437695 GO_REF:0000107 NCBI chr 2:45,232,325...45,258,345
Ensembl chr 2:46,965,498...46,991,516
JBrowse link
G Snx30 sorting nexin family member 30 involved_in ISO
IEA
(PMID:32513819)
GO_REF:0000107
RGD
Ensembl
PMID:32513819 GO_REF:0000107 NCBI chr 5:74,683,902...74,813,013
Ensembl chr 5:79,478,912...79,607,052
JBrowse link
G Snx4 sorting nexin 4 involved_in ISO
IBA
IEA
(PMID:32513819), (PMID:33468622)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:32513819 PMID:33468622 GO_REF:0000033 GO_REF:0000107 NCBI chr11:67,460,872...67,518,143
Ensembl chr11:80,965,967...81,028,448
JBrowse link
G Snx7 sorting nexin 7 involved_in ISO
IEA
(PMID:32513819)
GO_REF:0000107
RGD
Ensembl
PMID:32513819 GO_REF:0000107 NCBI chr 2:205,843,164...205,927,737
Ensembl chr 2:208,528,049...208,613,075
JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 5:79,005,139...79,016,615
Ensembl chr 5:84,014,803...84,042,748
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 IMP RGD PMID:23448468 RGD:13208863 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:51,511,492...51,537,746
JBrowse link
G Usp33 ubiquitin specific peptidase 33 involved_in ISO (PMID:24056301) RGD PMID:24056301 NCBI chr 2:241,283,209...241,328,479
Ensembl chr 2:243,943,175...243,988,424
JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
ISS
IEA
(PMID:31271352)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:31271352 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:17,448,207...17,454,117
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO
IEA
(PMID:31271352)
GO_REF:0000107
RGD
Ensembl
PMID:31271352 GO_REF:0000107 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:95,042,441...95,079,293
JBrowse link
positive regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elavl1 ELAV like RNA binding protein 1 IMP RGD PMID:33372336 RGD:407571673 NCBI chr12:2,640,936...2,684,787
Ensembl chr12:7,441,699...7,482,631
JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within ISO (PMID:24954904) RGD PMID:24954904 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:95,869,865...95,905,357
JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within ISO (PMID:23918802) RGD PMID:23918802 NCBI chr20:47,798,217...47,889,216
Ensembl chr20:49,380,813...49,471,821
JBrowse link
G Irgm immunity-related GTPase M involved_in ISO (PMID:28389568) RGD PMID:28389568 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,732,961...33,743,228
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) RGD PMID:24954904 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:17,024,878...17,071,406
JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfip2 ARF interacting protein 2 involved_in ISO
IEA
ISS
(PMID:33773106)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:33773106 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:159,974,255...159,980,398
Ensembl chr 1:169,387,485...169,392,166
JBrowse link
G Atg13 autophagy related 13 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:98,101,552...98,136,743
JBrowse link
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within
involved_in
ISO
IEA
PR:Q80W47 (PMID:24954904)
(PMID:32960676)
GO_REF:0000107
RGD
Ensembl
PMID:24954904 PMID:32960676 GO_REF:0000107 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:95,869,865...95,905,357
JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IEA
(PMID:33773106)
GO_REF:0000107
RGD
Ensembl
PMID:33773106 GO_REF:0000107 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:101,726,782...101,761,622
JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO
IEA
(PMID:33773106)
GO_REF:0000107
RGD
Ensembl
PMID:33773106 GO_REF:0000107 NCBI chr 8:19,807,733...19,817,321
Ensembl chr 8:28,083,936...28,093,491
JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:84,126,071...84,136,666
JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:11,678,299...11,686,079
JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) RGD PMID:33773106 NCBI chr 2:171,623,668...172,202,576
Ensembl chr 2:173,921,747...174,500,527
JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within ISO
IEA
(PMID:23455425)
GO_REF:0000107
RGD
Ensembl
PMID:23455425 GO_REF:0000107 NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:163,587,463...163,618,495
JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO
IEA
(PMID:23455425)
GO_REF:0000107
RGD
Ensembl
PMID:23455425 GO_REF:0000107 NCBI chr 6:132,096,992...132,156,702
Ensembl chr 6:137,918,051...137,977,767
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 acts_upstream_of_or_within ISO
IEA
(PMID:24098492)
GO_REF:0000107
RGD
Ensembl
PMID:24098492 GO_REF:0000107 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:22,119,792...22,203,539
JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in IEA
ISO
GO_REF:0000107
(PMID:32960676)
Ensembl
RGD
PMID:32960676 GO_REF:0000107 NCBI chr 2:135,528,116...135,538,719
Ensembl chr 2:137,678,978...137,689,581
JBrowse link
G Stx17 syntaxin 17 acts_upstream_of_or_within ISO
IEA
(PMID:23455425)
GO_REF:0000107
RGD
Ensembl
PMID:23455425 GO_REF:0000107 NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:67,241,727...67,302,218
JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:17,448,207...17,454,117
JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:107,097,755...107,127,831
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000117
GO_Central
UniProt
GO_REF:0000033 GO_REF:0000117 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:95,042,441...95,079,293
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within
ISO
IEA
IBA
ISS
(PMID:28561066)
GO_REF:0000117
GO_REF:0000107
PR:Q8C0J2 (PMID:24954904)
GO_REF:0000033
GO_REF:0000024
RGD
UniProt
Ensembl
GO_Central
PMID:24954904 PMID:28561066 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:17,024,878...17,071,406
JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:62,727,291...62,828,629
JBrowse link
G Chek2 checkpoint kinase 2 involved_in ISO
IEA
(PMID:37943659)
GO_REF:0000107
RGD
Ensembl
PMID:37943659 GO_REF:0000107 NCBI chr12:45,788,823...45,821,382
Ensembl chr12:51,449,140...51,480,667
JBrowse link
G Efnb1 ephrin B1 acts_upstream_of_positive_effect ISO
IEA
(PMID:33280498)
GO_REF:0000107
RGD
Ensembl
PMID:33280498 GO_REF:0000107 NCBI chr  X:64,257,351...64,270,158
Ensembl chr  X:68,297,492...68,349,546
JBrowse link
G Ephb2 Eph receptor B2 acts_upstream_of_positive_effect ISO
IEA
(PMID:33280498)
GO_REF:0000107
RGD
Ensembl
PMID:33280498 GO_REF:0000107 NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:154,179,065...154,360,615
JBrowse link
G Ift20 intraflagellar transport 20 involved_in ISO
IEA
(PMID:24089209)
GO_REF:0000107
RGD
Ensembl
PMID:24089209 GO_REF:0000107 NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,930,681...63,936,172
JBrowse link
G Ift88 intraflagellar transport 88 involved_in ISO (PMID:24089209) RGD PMID:24089209 NCBI chr15:35,685,678...35,786,875
Ensembl chr15:35,688,927...35,781,634
JBrowse link
G Mtmr3 myotubularin related protein 3 involved_in IEA
ISO
GO_REF:0000107
(PMID:25578879)
Ensembl
RGD
PMID:25578879 GO_REF:0000107 NCBI chr14:79,340,523...79,460,947
Ensembl chr14:83,564,065...83,684,473
JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO
IEA
(PMID:23524951)
GO_REF:0000107
RGD
Ensembl
PMID:23524951 GO_REF:0000107 NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:164,167,928...164,277,435
JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr 9:74,057,488...74,151,610
Ensembl chr 9:74,057,514...74,151,610
JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in ISO (PMID:20545908) RGD PMID:20545908 NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:211,835,073...211,843,337
Ensembl chr  X:211,835,073...211,843,337
JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISO
IEA
ISS
(PMID:27334615)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:27334615 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:49,766,340...49,791,434
Ensembl chr 5:54,562,570...54,587,637
JBrowse link
G Rnf186 ring finger protein 186 acts_upstream_of_positive_effect ISO
IEA
(PMID:33280498)
GO_REF:0000107
RGD
Ensembl
PMID:33280498 GO_REF:0000107 NCBI chr 5:151,210,492...151,211,716
Ensembl chr 5:156,493,752...156,494,978
JBrowse link
G Rnf5 ring finger protein 5 acts_upstream_of_or_within ISO
IEA
MGI:3775796 (PMID:23093945)
GO_REF:0000107
RGD
Ensembl
PMID:23093945 GO_REF:0000107 NCBI chr20:4,145,539...4,147,985
Ensembl chr20:4,150,138...4,152,591
JBrowse link
G Tbc1d12 TBC1 domain family, member 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:236,603,597...236,685,859
Ensembl chr 1:246,015,994...246,098,241
JBrowse link
G Tbc1d14 TBC1 domain family, member 14 involved_in ISO
IBA
IEA
(PMID:22613832)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:22613832 GO_REF:0000033 GO_REF:0000107 NCBI chr14:74,172,652...74,272,182
Ensembl chr14:78,397,355...78,496,865
JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:20529957) RGD PMID:20529957 NCBI chr  X:17,853,086...17,856,505
Ensembl chr  X:21,229,197...21,232,268
JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in IMP
IEA
IBA
ISO
GO_REF:0000107
GO_REF:0000033
(PMID:22186024)
Ensembl
GO_Central
RGD
PMID:22186024 PMID:22186024 GO_REF:0000033 GO_REF:0000107, RGD:13442482 NCBI chr 5:153,292,722...153,312,143
Ensembl chr 5:158,575,749...158,595,156
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO
IEA
(PMID:25878248)
GO_REF:0000107
RGD
Ensembl
PMID:25878248 GO_REF:0000107 NCBI chr 1:190,586,649...190,600,034
Ensembl chr 1:190,586,650...190,597,929
JBrowse link
G Dnajc16 DnaJ heat shock protein family (Hsp40) member C16 involved_in ISS
ISO
GO_REF:0000024
(PMID:32492081)
UniProt
RGD
PMID:32492081 GO_REF:0000024 NCBI chr 5:154,073,372...154,106,246
Ensembl chr 5:159,361,314...159,389,298
JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2 interacting protein 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:193,708,164...193,725,348
Ensembl chr 1:203,137,778...203,154,962
JBrowse link
G Irgq immunity-related GTPase Q involved_in ISO (PMID:39481378) RGD PMID:39481378 NCBI chr 1:80,123,925...80,131,881
Ensembl chr 1:89,239,205...89,259,799
JBrowse link
G Retreg1 reticulophagy regulator 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:76,335,609...76,474,817
Ensembl chr 2:78,066,031...78,225,356
JBrowse link
G Retreg2 reticulophagy regulator family member 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:84,088,935...84,095,072
Ensembl chr 9:84,088,964...84,094,837
JBrowse link
G Retreg3 reticulophagy regulator family member 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:86,028,767...86,052,575
Ensembl chr10:86,529,055...86,552,990
JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO
IEA
(PMID:22020285)
GO_REF:0000107
RGD
Ensembl
PMID:22020285 GO_REF:0000107 NCBI chr12:9,635,009...9,726,520
Ensembl chr12:14,749,043...14,840,273
JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO
IEA
MGI:6356543 (PMID:20810658), (PMID:27358407)
GO_REF:0000107
RGD
Ensembl
PMID:20810658 PMID:27358407 GO_REF:0000107 NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,754,644...15,761,659
JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO
IEA
(PMID:23023224)
GO_REF:0000107
RGD
Ensembl
PMID:23023224 GO_REF:0000107 NCBI chr19:13,405,482...13,440,384
Ensembl chr19:13,411,157...13,446,110
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20668
    cellular process 19605
      process utilizing autophagic mechanism 604
        autophagy 604
          macroautophagy 366
            autophagosome organization 161
              autophagosome assembly + 152
              autophagosome membrane disassembly 0
              regulation of autophagosome size + 4
Path 2
Term Annotations click to browse term
  biological_process 20668
    cellular process 19605
      cellular component organization or biogenesis 7219
        cellular component organization 6928
          organelle organization 3741
            vacuole organization 260
              autophagosome organization 161
                autophagosome assembly + 152
                autophagosome membrane disassembly 0
                regulation of autophagosome size + 4
paths to the root