Gpsm1 (G-protein signaling modulator 1)

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Gene: Gpsm1 (G-protein signaling modulator 1) Rattus norvegicus

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Symbol:

Gpsm1

Name:

G-protein signaling modulator 1

RGD ID:

628682

Description:

Enables G-protein alpha-subunit binding activity. Involved in regulation of G protein-coupled receptor signaling pathway. Predicted to be located in several cellular components, including Golgi membrane; endoplasmic reticulum membrane; and nucleoplasm. Predicted to be part of protein-containing complex. Predicted to be active in cell cortex. Orthologous to human GPSM1 (G protein signaling modulator 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

activator of G-protein signaling 3; Ags3; G-protein signaling modulator 1 (AGS3-like, C. elegans); G-protein signalling modulator 1 (AGS3-like, C. elegans); G-protein-signaling modulator 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GPSM1 (G protein signaling modulator 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Gpsm1 (G-protein signalling modulator 1 (AGS3-like, C. elegans))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gpsm1 (G protein signaling modulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GPSM1 (G protein signaling modulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GPSM1 (G protein signaling modulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gpsm1 (G protein signaling modulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GPSM1 (G protein signaling modulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GPSM1 (G protein signaling modulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gpsm1 (G protein signaling modulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Gpsm1 (G-protein signalling modulator 1 (AGS3-like, C. elegans))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	GPSM1 (G protein signaling modulator 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gpsm1b (G protein signaling modulator 1b)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ags-3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	pins	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gpsm1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	29,538,929 - 29,565,921 (+)	NCBI		GRCr8
mRatBN7.2	3	9,140,816 - 9,167,828 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	9,128,636 - 9,167,827 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	12,194,280 - 12,221,191 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	20,777,510 - 20,804,421 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	19,032,845 - 19,059,758 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	3,767,394 - 3,794,360 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	3,767,394 - 3,794,359 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	9,127,874 - 9,155,507 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	4,493,828 - 4,520,795 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	4,500,900 - 4,519,959 (+)	NCBI
Celera	3	3,960,926 - 3,987,743 (+)	NCBI		Celera
Cytogenetic Map	3	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Adams-Oliver Syndrome 5 (ISO)

autosomal dominant intellectual developmental disorder 8 (ISO)

autosomal dominant nocturnal frontal lobe epilepsy 5 (ISO)

Cocaine-Related Disorders (ISO)

developmental and epileptic encephalopathy 14 (ISO)

Ehlers-Danlos syndrome classic type 1 (ISO)

Joubert syndrome 1 (ISO)

Kleefstra syndrome 1 (ISO)

Leigh disease (ISO)

primary coenzyme Q10 deficiency 7 (ISO)

Rafiq syndrome (ISO)

tuberous sclerosis 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (EXP)

4-hydroxyphenyl retinamide (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

ammonium chloride (EXP)

benzo[a]pyrene (EXP,ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

C60 fullerene (EXP)

cantharidin (ISO)

chlorohydrocarbon (EXP)

chlorpyrifos (ISO)

chromium(6+) (ISO)

cobalt dichloride (ISO)

cocaine (EXP)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

DDE (ISO)

diazinon (ISO)

disulfiram (ISO)

dorsomorphin (ISO)

doxorubicin (EXP,ISO)

endosulfan (EXP)

fipronil (EXP)

genistein (ISO)

methamphetamine (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

methylmercury chloride (EXP)

N-Nitrosopyrrolidine (ISO)

O-methyleugenol (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

phenobarbital (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

temozolomide (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

tris(2-butoxyethyl) phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zinc atom (EXP)

zinc(0) (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

establishment of mitotic spindle orientation (IBA)

negative regulation of GTPase activity (ISO)

negative regulation of guanyl-nucleotide exchange factor activity (ISO)

nervous system development (IEA)

positive regulation of macroautophagy (ISO)

regulation of G protein-coupled receptor signaling pathway (IMP)

Cellular Component

cell cortex (IBA,ISO)

cytoplasm (IEA)

cytosol (IEA)

endoplasmic reticulum membrane (ISO)

Golgi apparatus (IEA,ISO)

Golgi membrane (ISO)

membrane (IEA)

nucleoplasm (IEA,ISO)

plasma membrane (ISO)

protein-containing complex (ISO)

Molecular Function

G-protein alpha-subunit binding (IBA,IDA)

GDP-dissociation inhibitor activity (IBA,ISO)

GTPase regulator activity (IEA)

protein binding (IPI,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	The PDZ and band 4.1 containing protein Frmpd1 regulates the subcellular location of activator of G-protein signaling 3 and its interaction with G-proteins.	An N, etal., J Biol Chem. 2008 Sep 5;283(36):24718-28. Epub 2008 Jun 19.
2.	Expression analysis and subcellular distribution of the two G-protein regulators AGS3 and LGN indicate distinct functionality. Localization of LGN to the midbody during cytokinesis.	Blumer JB, etal., J Biol Chem 2002 May 3;277(18):15897-903.
3.	Interaction of activator of G-protein signaling 3 (AGS3) with LKB1, a serine/threonine kinase involved in cell polarity and cell cycle progression: phosphorylation of the G-protein regulatory (GPR) motif as a regulatory mechanism for the interaction of GPR motifs with Gi alpha.	Blumer JB, etal., J Biol Chem 2003 Jun 27;278(26):23217-20. Epub 2003 Apr 28.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	Receptor- and nucleotide exchange-independent mechanisms for promoting G protein subunit dissociation.	Ghosh M, etal., J Biol Chem 2003 Sep 12;278(37):34747-50. Epub 2003 Jul 24.
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	Stabilization of the GDP-bound conformation of Gialpha by a peptide derived from the G-protein regulatory motif of AGS3.	Peterson YK, etal., J Biol Chem 2000 Oct 27;275(43):33193-6.
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Receptor-independent activators of heterotrimeric G-protein signaling pathways.	Takesono A, etal., J Biol Chem 1999 Nov 19;274(47):33202-5.

Additional References at PubMed

PMID:8889548	PMID:11024022	PMID:11042168	PMID:11121039	PMID:11278352	PMID:12477932	PMID:12642577	PMID:12834360	PMID:14530282	PMID:14726514	PMID:15091342	PMID:15489334
PMID:15937104	PMID:16009138	PMID:16154268	PMID:16458856	PMID:18541531	PMID:18719114	PMID:20065032	PMID:20305814	PMID:21343176	PMID:22074847	PMID:23404409	PMID:23504261

Genomics

Comparative Map Data

Gpsm1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	29,538,929 - 29,565,921 (+)	NCBI		GRCr8
mRatBN7.2	3	9,140,816 - 9,167,828 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	9,128,636 - 9,167,827 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	12,194,280 - 12,221,191 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	20,777,510 - 20,804,421 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	19,032,845 - 19,059,758 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	3,767,394 - 3,794,360 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	3,767,394 - 3,794,359 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	9,127,874 - 9,155,507 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	4,493,828 - 4,520,795 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	4,500,900 - 4,519,959 (+)	NCBI
Celera	3	3,960,926 - 3,987,743 (+)	NCBI		Celera
Cytogenetic Map	3	p13	NCBI

GPSM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	136,327,539 - 136,359,601 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	136,327,476 - 136,359,605 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	139,221,995 - 139,254,053 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	138,348,726 - 138,372,493 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	136,504,741 - 136,528,509	NCBI
Celera	9	109,736,118 - 109,768,993 (+)	NCBI		Celera
Cytogenetic Map	9	q34.3	NCBI
HuRef	9	108,681,506 - 108,713,413 (+)	NCBI		HuRef
CHM1_1	9	139,370,654 - 139,402,253 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	148,556,955 - 148,588,936 (+)	NCBI		T2T-CHM13v2.0

Gpsm1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	26,204,623 - 26,238,249 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	26,205,527 - 26,238,249 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	26,314,611 - 26,348,237 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	26,315,515 - 26,348,237 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	26,171,060 - 26,203,755 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	26,137,549 - 26,170,244 (+)	NCBI		MGSCv36	mm8
Celera	2	26,038,151 - 26,065,930 (+)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI
cM Map	2	18.73	NCBI

Gpsm1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	4,361,139 - 4,387,356 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955513	4,363,534 - 4,387,356 (-)	NCBI	ChiLan1.0	ChiLan1.0

GPSM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	3,026,987 - 3,058,273 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	3,029,322 - 3,060,608 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	107,400,819 - 107,432,165 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	136,387,430 - 136,411,951 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	136,383,929 - 136,410,561 (+)	Ensembl	panpan1.1		panPan2

GPSM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	49,124,828 - 49,152,079 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	49,118,627 - 49,152,208 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	48,375,389 - 48,402,483 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	50,001,466 - 50,028,600 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	50,001,472 - 50,028,791 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	48,781,935 - 48,809,055 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	49,076,267 - 49,103,397 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	49,123,796 - 49,150,891 (-)	NCBI		UU_Cfam_GSD_1.0

Gpsm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	201,905,770 - 201,932,514 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936669	1,440,902 - 1,463,944 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936669	1,442,550 - 1,469,563 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GPSM1
(Sus scrofa - pig)

No map positions available.

GPSM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	1,845,882 - 1,877,400 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	1,847,233 - 1,877,265 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666058	3,338,671 - 3,370,250 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gpsm1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	1,507,242 - 1,529,163 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	1,507,255 - 1,529,170 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Gpsm1
82 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	187
Count of miRNA genes:	125
Interacting mature miRNAs:	153
Transcripts:	ENSRNOT00000067840
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	8658162	27494778	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	1	36847613	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6537645	10778823	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	8227194	47233430	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	8227194	33703538	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	1	31158234	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	39874793	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	8658162	27494778	Rat
70202	Alc19	Alcohol consumption QTL 19	2.5		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	3	1	27494778	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	38710544	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	pulse pressure (CMO:0000292)	3	1	33278763	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6537645	10778823	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	1	33230976	Rat

Markers in Region

RH130608

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	9,167,608 - 9,167,792 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	3,794,141 - 3,794,324	NCBI	Rnor6.0
Rnor_5.0	3	9,155,288 - 9,155,471	UniSTS	Rnor5.0
RGSC_v3.4	3	4,520,576 - 4,520,759	UniSTS	RGSC3.4
Celera	3	3,987,524 - 3,987,707	UniSTS
Cytogenetic Map	3	p13	UniSTS

RH140521

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	9,167,731 - 9,167,977 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	3,794,264 - 3,794,509	NCBI	Rnor6.0
Rnor_5.0	3	9,155,411 - 9,155,656	UniSTS	Rnor5.0
RGSC_v3.4	3	4,520,699 - 4,520,944	UniSTS	RGSC3.4
Celera	3	3,987,647 - 3,987,892	UniSTS
Cytogenetic Map	3	p13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001145469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_144745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC129824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF107723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY136742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC086535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC105302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF408282	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB615566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB743977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000067840 ⟹ ENSRNOP00000062075

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	9,140,864 - 9,167,827 (+)	Ensembl
Rnor_6.0 Ensembl	3	3,767,394 - 3,794,359 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084567 ⟹ ENSRNOP00000070079

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	9,155,125 - 9,167,827 (+)	Ensembl
Rnor_6.0 Ensembl	3	3,788,583 - 3,794,359 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097564 ⟹ ENSRNOP00000079739

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	9,137,147 - 9,167,827 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102548 ⟹ ENSRNOP00000089684

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	9,145,516 - 9,167,827 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111577 ⟹ ENSRNOP00000094743

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	9,140,864 - 9,167,827 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118478 ⟹ ENSRNOP00000084484

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	9,128,636 - 9,167,827 (+)	Ensembl

RefSeq Acc Id:

NM_001145469 ⟹ NP_001138941

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	29,560,144 - 29,565,921 (+)	NCBI
mRatBN7.2	3	9,162,051 - 9,167,828 (+)	NCBI
Rnor_6.0	3	3,788,583 - 3,794,360 (+)	NCBI
Rnor_5.0	3	9,127,874 - 9,155,507 (+)	NCBI
RGSC_v3.4	3	4,493,828 - 4,520,795 (+)	RGD
Celera	3	3,981,980 - 3,987,743 (+)	NCBI

Sequence:

show sequence

GGCACTTGGCACTTCGGGCAGGTGGTAGCCGCTGTGCCTGGCACCTTGGCATCCTGCCTGGGCT
GCACGTGGCCTGGCACCCATACAGCTCCTGATTGCTGCGGCTGGAAGGAGCCTGTGATTCTGCG
GTATCCCCAGGGCCCCGTCCTCTGACGAGGAGTGTTTCTTCGATCTGCTGAGTAAGTTCCAGAG
CAGTCGTATGGATGACCAACGCTGTCCCCTGGAGGAAGGCCAGGCTGGGGCTGCTGAGGCTACA
GCTGCCCCAACCCTGGAGGAGAGAGCGGCTCAGCCCTCTGTAACAGCTTCACCACAGACTGAAG
AGTTCTTTGACCTCATTGCCAGCTCCCAGAGCCGCCGGCTGGATGACCAGAGGGCTAGCGTAGG
CAGCCTGCCTGGGCTTCGCATCACCCTCAACAACGTGGGGCACCTCCGAGGCGACGGGGACCCC
CAGGAGCCAGGGGATGAGTTTTTCAACATGCTTATCAAATACCAGTCCTCCAGGATTGATGACC
AGCGCTGTCCACCCCCTGATGTGCTGCCCCGAGGCCCCACCATGCCTGATGAGGATTTCTTCAG
CCTTATCCAGAGGGTGCAGGCTAAGCGGATGGATGAGCAGCGTGTGGACCTGGCTGGGAGTCCA
GACCAAGAGGCCAGTGGGCTGCCTGATCCCCGGCAGCAATGTCCGCCAGGTGCCAGCTAAGGCC
TCACCCCTACAGCCAGCCATGCCCTACTCTGGACTCTGTAGGCTCACAGTTGTCCACAGTGGCC
ATGACCCCCCAGTAAGCCAAATCCTCCCAAGGCCATGATGGAGAGCCAGCTCAGCCCCAACCCC
TTCCTCCCACTGAGCCAGATGGTGGGCACACACCCCTCAAGAACCCCCCACCCTAGGTGGTGGG
CTCAGGCTAGAGCTGCTGTATGGGGGAGGGCATGCTTCTGTCCCCATATGATCCACAGCTTAAC
TGCAGGCCCTGCCCTGCCCTGTCCTGCCCCAGGCCGGGCCTTCAGCATGTTGGCCCCAAGCCCC
GGTGCTGTCCAGAGTCTTCTCCCTCAAGCCCTGCCCTGCCAAATGTGAAATTCTGCCAACTCTC
CCAAGCTCCCCAGAGGGGTTTCAAAGACTTCTGGTGGGGGCTACAGTGGCAAGGCATCTTCTGT
CCCCCAGCTGGTCCTGGGACGGCTATGAAGGAGGTACACTGCTCTGCCTCACCTCCCCAGGGCA
GGCCTATCCTGGTTGTGGCAGGCCTGGCTGTGCCCAACCCTGCTGTGGGAGATTGGCGGCTGTG
AAGTCCAGATACCCTGACCTGATAGTCTCCAGACTTGTACTTGGCCTTTGAGAAAAGCTGGACC
CCGCCTCTGGCAGCGGGAAGAGGCAAGCCTCCAAGCCAAGAGCATAGGGTCTTGTCCTAGGAGT
GCTTGGCTGGCAGTGGACATTCATGAGGAATCTGCTCTACTAGATCCTCCAGGCCTCTTGGTGA
ACATCTACCTTGGATTACTAGGGAGATGGTATCTTGGCTTTCTCCCCAAGGAGGGGTCCAGCTG
CAATATCTGAGTTGGACATAGGGCACTATAGCTGGGGTGGAGAGACTCAGGCAGAACTGAGAAC
TACATCCATGAGATAGACCCTTGGGGACCGTGGTCCTATTTCTTGCCTGCAGGCACTATAGGCA
GCCCTCCTGGAGGGCTCTGTACAACCTTCTAACCCAGAGCCTCTTACCCTGTAGCCTAGGAGGG
AGCCAGGGCAAGGGCAACTGGGGACCCAACTTCTGAGAGAGAGAGACACCATCACTCTGAGGGC
AGAAGCGGAAACCAGAGCACAGGGTCTCGGGCGGGACACGGTGGCCGCCCGCATACTTGAATGT
ACATGCATATTTATTGCTTACACGTGTTTGCCATGTTGTTCACGGGTCCTTTCCAACCCGAGAG
GTACGTTTGTTTTGTTTTACCCAAAAATAAAAAAATCTGCCAAGTGGAAAAAAAAAAAAAAAAA
A

hide sequence

RefSeq Acc Id:

NM_144745 ⟹ NP_653346

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	29,538,953 - 29,565,921 (+)	NCBI
mRatBN7.2	3	9,140,864 - 9,167,828 (+)	NCBI
Rnor_6.0	3	3,767,394 - 3,794,360 (+)	NCBI
Rnor_5.0	3	9,127,874 - 9,155,507 (+)	NCBI
RGSC_v3.4	3	4,493,828 - 4,520,795 (+)	RGD
Celera	3	3,960,926 - 3,987,743 (+)	RGD

Sequence:

show sequence

TCCTCGGCGTCTCGCGCGGACGCGCGGACAGGCGGACGGACGCGCGGACAGGCGGGCAGATCGG
CAGTCGGACGGCCGCAGCGCGGGGCGGTGCTCCTGCTCGGCGCGTCCCCGACTCATGGCGAGCC
CGGCCCCGCCCGCGGCCGAGGAGCTCCCGGGCCCAGCCGCCAGGCGCCTCTACTCCAGGATGGA
GGCCTCCTGTCTGGAGCTGGCACTGGAAGGTGAGCGGCTGTGCAAGGCGGGGGACTTCAAGGCA
GGTGTGGCCTTCTTTGAGGCTGCCGTGCAGGTGGGCACTGAGGACCTGAAGACACTGAGTGCTA
TCTACAGCCAGCTGGGCAATGCCTACTTCTACCTGAAGGAGTATGCCAGGGCCCTGCAGTTCCA
CAAACATGACTTGCTGCTGGCACGGACCATTGGCGACCGCATGGGGGAAGCCAAGGCCAGTGGG
AACCTGGGCAACACACTCAAGGTCCTGGGCCGATTCGATGAGGCAATTGTCTGTTGCCAGCGAC
ACTTGGACATTGCCCAGGAGCAGGGGGACAAGGTTGGGGAAGCGAGAGCACTCTACAACATTGG
AAATGTGTACCATGCCAAGGGCAAACAGCTATCCTGGAACGCTGCACAGGACCCTGGGCACCTG
CCACCTGATGTCCGTGAGACACTGCACAGGGCCTCTGAGTTCTATGAGAGGAACCTGTCCTTGG
TGAAGGAGCTAGGCGATCGGGCAGCCCAGGGCAGAGCCTATGGCAACCTGGGTAACACCCACTA
CCTGCTGGGGAACTTCACAGAAGCTACAACCTTCCACAAAGAGCGCCTGGCCATTGCTAAGGAG
TTTGGAGACAAGGCAGCTGAGAGGAGAGCCTACAGCAACTTGGGCAATGCTCACATCTTCCTGG
GGCGCTTTGATGTGGCTGCTGAACATTACAAGAAGACGCTGCAGCTGTCTCGGCAGCTCCGGGA
CCAGGCCGTGGAAGCACAGGCTTGCTACAGTCTGGGGAACACCTACACACTGCTGCAGGACTAC
GAGCGGGCTGCTGAGTACCACCTGCGGCACCTTGTCATTGCCCAGGAGCTGGCTGATAGGGTGG
GAGAGGGCCGAGCTTGCTGGAGCCTGGGGAACGCCTACGTGTCCATGGGGAGCCCCGCACAGGC
CTTGACCTTTGCCAAAAAACATCTGCAGATCTCCCAGGAGATTGGAGACCGAAATGGAGAGCTC
ACGGCCCGCATGAATATTGCTCACCTGCAGCTGGCACTGGGCCGGCTGACTAGCCCTGCGGCGG
CAGAGAAGCCAGATCTGGCTGGCTATGAGGCACAAGGAGCAAGACCCAAAAGGACACAGAGGCT
GAGTGCGGAGACCTGGGACCTGCTGCGGCTCCCCCTGGACCGGGAGCAAAATGGAGAGACCCAC
CACACAGGGGACTGGAGGGGTCCAAGCAGGGACTCGCTTCCTCTCCCCATGAGGAGCAGGAAGT
ACCAGGAAGGTCCAGATGCCATTGAGAGGAGACCCCGGGAGGGTAGCCACTCTCCACTGGACAG
TGCTGATGTAAGGGTACAGGTGCCTCGCACGGGTATCCCCAGGGCCCCGTCCTCTGACGAGGAG
TGTTTCTTCGATCTGCTGAGTAAGTTCCAGAGCAGTCGTATGGATGACCAACGCTGTCCCCTGG
AGGAAGGCCAGGCTGGGGCTGCTGAGGCTACAGCTGCCCCAACCCTGGAGGAGAGAGCGGCTCA
GCCCTCTGTAACAGCTTCACCACAGACTGAAGAGTTCTTTGACCTCATTGCCAGCTCCCAGAGC
CGCCGGCTGGATGACCAGAGGGCTAGCGTAGGCAGCCTGCCTGGGCTTCGCATCACCCTCAACA
ACGTGGGGCACCTCCGAGGCGACGGGGACCCCCAGGAGCCAGGGGATGAGTTTTTCAACATGCT
TATCAAATACCAGTCCTCCAGGATTGATGACCAGCGCTGTCCACCCCCTGATGTGCTGCCCCGA
GGCCCCACCATGCCTGATGAGGATTTCTTCAGCCTTATCCAGAGGGTGCAGGCTAAGCGGATGG
ATGAGCAGCGTGTGGACCTGGCTGGGAGTCCAGACCAAGAGGCCAGTGGGCTGCCTGATCCCCG
GCAGCAATGTCCGCCAGGTGCCAGCTAAGGCCTCACCCCTACAGCCAGCCATGCCCTACTCTGG
ACTCTGTAGGCTCACAGTTGTCCACAGTGGCCATGACCCCCCAGTAAGCCAAATCCTCCCAAGG
CCATGATGGAGAGCCAGCTCAGCCCCAACCCCTTCCTCCCACTGAGCCAGATGGTGGGCACACA
CCCCTCAAGAACCCCCCACCCTAGGTGGTGGGCTCAGGCTAGAGCTGCTGTATGGGGGAGGGCA
TGCTTCTGTCCCCATATGATCCACAGCTTAACTGCAGGCCCTGCCCTGCCCTGTCCTGCCCCAG
GCCGGGCCTTCAGCATGTTGGCCCCAAGCCCCGGTGCTGTCCAGAGTCTTCTCCCTCAAGCCCT
GCCCTGCCAAATGTGAAATTCTGCCAACTCTCCCAAGCTCCCCAGAGGGGTTTCAAAGACTTCT
GGTGGGGGCTACAGTGGCAAGGCATCTTCTGTCCCCCAGCTGGTCCTGGGACGGCTATGAAGGA
GGTACACTGCTCTGCCTCACCTCCCCAGGGCAGGCCTATCCTGGTTGTGGCAGGCCTGGCTGTG
CCCAACCCTGCTGTGGGAGATTGGCGGCTGTGAAGTCCAGATACCCTGACCTGATAGTCTCCAG
ACTTGTACTTGGCCTTTGAGAAAAGCTGGACCCCGCCTCTGGCAGCGGGAAGAGGCAAGCCTCC
AAGCCAAGAGCATAGGGTCTTGTCCTAGGAGTGCTTGGCTGGCAGTGGACATTCATGAGGAATC
TGCTCTACTAGATCCTCCAGGCCTCTTGGTGAACATCTACCTTGGATTACTAGGGAGATGGTAT
CTTGGCTTTCTCCCCAAGGAGGGGTCCAGCTGCAATATCTGAGTTGGACATAGGGCACTATAGC
TGGGGTGGAGAGACTCAGGCAGAACTGAGAACTACATCCATGAGATAGACCCTTGGGGACCGTG
GTCCTATTTCTTGCCTGCAGGCACTATAGGCAGCCCTCCTGGAGGGCTCTGTACAACCTTCTAA
CCCAGAGCCTCTTACCCTGTAGCCTAGGAGGGAGCCAGGGCAAGGGCAACTGGGGACCCAACTT
CTGAGAGAGAGAGACACCATCACTCTGAGGGCAGAAGCGGAAACCAGAGCACAGGGTCTCGGGC
GGGACACGGTGGCCGCCCGCATACTTGAATGTACATGCATATTTATTGCTTACACGTGTTTGCC
ATGTTGTTCACGGGTCCTTTCCAACCCGAGAGGTACGTTTGTTTTGTTTTACCCAAAAATAAAA
AAATCTGCCAAGTGGAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006233670 ⟹ XP_006233732

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	29,543,547 - 29,565,919 (+)	NCBI
mRatBN7.2	3	9,144,692 - 9,167,828 (+)	NCBI
Rnor_6.0	3	3,771,938 - 3,794,358 (+)	NCBI
Rnor_5.0	3	9,127,874 - 9,155,507 (+)	NCBI

Sequence:

show sequence

TTATACCCTGGGACAGACGGAGGGACTGTTAGAGAGCTGGGGTCTCCTATAGCCCAGCCTTAAG
GTCCTGAGATTGGCGCATCCCCTGGGACTACGCCTAGAGCCCTGTGATGCTGGCCTCTGCCATG
GAGGGCCAGCCTCTGGCCCTGAGCTTGGCAGAGAAGGCTGTGTGCAAGGTGGTGTATGGTGCCC
CTCGCCCTCGCCCGTTGCTGCTGCCTGTGGGCCTGGAGCTGTGGCTGTATGTGCAGAAGATGCG
TAACCTCCAGAGAAAGAGGATGGAGGCCTCCTGTCTGGAGCTGGCACTGGAAGGTGAGCGGCTG
TGCAAGGCGGGGGACTTCAAGGCAGGTGTGGCCTTCTTTGAGGCTGCCGTGCAGGTGGGCACTG
AGGACCTGAAGACACTGAGTGCTATCTACAGCCAGCTGGGCAATGCCTACTTCTACCTGAAGGA
GTATGCCAGGGCCCTGCAGTTCCACAAACATGACTTGCTGCTGGCACGGACCATTGGCGACCGC
ATGGGGGAAGCCAAGGCCAGTGGGAACCTGGGCAACACACTCAAGGTCCTGGGCCGATTCGATG
AGGCAATTGTCTGTTGCCAGCGACACTTGGACATTGCCCAGGAGCAGGGGGACAAGGTTGGGGA
AGCGAGAGCACTCTACAACATTGGAAATGTGTACCATGCCAAGGGCAAACAGCTATCCTGGAAC
GCTGCACAGGACCCTGGGCACCTGCCACCTGATGTCCGTGAGACACTGCACAGGGCCTCTGAGT
TCTATGAGAGGAACCTGTCCTTGGTGAAGGAGCTAGGCGATCGGGCAGCCCAGGGCAGAGCCTA
TGGCAACCTGGGTAACACCCACTACCTGCTGGGGAACTTCACAGAAGCTACAACCTTCCACAAA
GAGCGCCTGGCCATTGCTAAGGAGTTTGGAGACAAGGCAGCTGAGAGGAGAGCCTACAGCAACT
TGGGCAATGCTCACATCTTCCTGGGGCGCTTTGATGTGGCTGCTGAACATTACAAGAAGACGCT
GCAGCTGTCTCGGCAGCTCCGGGACCAGGCCGTGGAAGCACAGGCTTGCTACAGTCTGGGGAAC
ACCTACACACTGCTGCAGGACTACGAGCGGGCTGCTGAGTACCACCTGCGGCACCTTGTCATTG
CCCAGGAGCTGGCTGATAGGGTGGGAGAGGGCCGAGCTTGCTGGAGCCTGGGGAACGCCTACGT
GTCCATGGGGAGCCCCGCACAGGCCTTGACCTTTGCCAAAAAACATCTGCAGATCTCCCAGGAG
ATTGGAGACCGAAATGGAGAGCTCACGGCCCGCATGAATATTGCTCACCTGCAGCTGGCACTGG
GCCGGCTGACTAGCCCTGCGGCGGCAGAGAAGCCAGATCTGGCTGGCTATGAGGCACAAGGAGC
AAGACCCAAAAGGACACAGAGGCTGAGTGCGGAGACCTGGGACCTGCTGCGGCTCCCCCTGGAC
CGGGAGCAAAATGGAGAGACCCACCACACAGGGGACTGGAGGGGTCCAAGCAGGGACTCGCTTC
CTCTCCCCATGAGGAGCAGGAAGTACCAGGAAGGTCCAGATGCCATTGAGAGGAGACCCCGGGA
GGGTAGCCACTCTCCACTGGACAGTGCTGATGTAAGGGTACAGGTGCCTCGCACGGGTATCCCC
AGGGCCCCGTCCTCTGACGAGGAGTGTTTCTTCGATCTGCTGAGTAAGTTCCAGAGCAGTCGTA
TGGATGACCAACGCTGTCCCCTGGAGGAAGGCCAGGCTGGGGCTGCTGAGGCTACAGCTGCCCC
AACCCTGGAGGAGAGAGCGGCTCAGCCCTCTGTAACAGCTTCACCACAGACTGAAGAGTTCTTT
GACCTCATTGCCAGCTCCCAGAGCCGCCGGCTGGATGACCAGAGGGCTAGCGTAGGCAGCCTGC
CTGGGCTTCGCATCACCCTCAACAACGTGGGGCACCTCCGAGGCGACGGGGACCCCCAGGAGCC
AGGGGATGAGTTTTTCAACATGCTTATCAAATACCAGTCCTCCAGGATTGATGACCAGCGCTGT
CCACCCCCTGATGTGCTGCCCCGAGGCCCCACCATGCCTGATGAGGATTTCTTCAGCCTTATCC
AGAGGGTGCAGGCTAAGCGGATGGATGAGCAGCGTGTGGACCTGGCTGGGAGTCCAGACCAAGA
GGCCAGTGGGCTGCCTGATCCCCGGCAGCAATGTCCGCCAGGTGCCAGCTAAGGCCTCACCCCT
ACAGCCAGCCATGCCCTACTCTGGACTCTGTAGGCTCACAGTTGTCCACAGTGGCCATGACCCC
CCAGTAAGCCAAATCCTCCCAAGGCCATGATGGAGAGCCAGCTCAGCCCCAACCCCTTCCTCCC
ACTGAGCCAGATGGTGGGCACACACCCCTCAAGAACCCCCCACCCTAGGTGGTGGGCTCAGGCT
AGAGCTGCTGTATGGGGGAGGGCATGCTTCTGTCCCCATATGATCCACAGCTTAACTGCAGGCC
CTGCCCTGCCCTGTCCTGCCCCAGGCCGGGCCTTCAGCATGTTGGCCCCAAGCCCCGGTGCTGT
CCAGAGTCTTCTCCCTCAAGCCCTGCCCTGCCAAATGTGAAATTCTGCCAACTCTCCCAAGCTC
CCCAGAGGGGTTTCAAAGACTTCTGGTGGGGGCTACAGTGGCAAGGCATCTTCTGTCCCCCAGC
TGGTCCTGGGACGGCTATGAAGGAGGTACACTGCTCTGCCTCACCTCCCCAGGGCAGGCCTATC
CTGGTTGTGGCAGGCCTGGCTGTGCCCAACCCTGCTGTGGGAGATTGGCGGCTGTGAAGTCCAG
ATACCCTGACCTGATAGTCTCCAGACTTGTACTTGGCCTTTGAGAAAAGCTGGACCCCGCCTCT
GGCAGCGGGAAGAGGCAAGCCTCCAAGCCAAGAGCATAGGGTCTTGTCCTAGGAGTGCTTGGCT
GGCAGTGGACATTCATGAGGAATCTGCTCTACTAGATCCTCCAGGCCTCTTGGTGAACATCTAC
CTTGGATTACTAGGGAGATGGTATCTTGGCTTTCTCCCCAAGGAGGGGTCCAGCTGCAATATCT
GAGTTGGACATAGGGCACTATAGCTGGGGTGGAGAGACTCAGGCAGAACTGAGAACTACATCCA
TGAGATAGACCCTTGGGGACCGTGGTCCTATTTCTTGCCTGCAGGCACTATAGGCAGCCCTCCT
GGAGGGCTCTGTACAACCTTCTAACCCAGAGCCTCTTACCCTGTAGCCTAGGAGGGAGCCAGGG
CAAGGGCAACTGGGGACCCAACTTCTGAGAGAGAGAGACACCATCACTCTGAGGGCAGAAGCGG
AAACCAGAGCACAGGGTCTCGGGCGGGACACGGTGGCCGCCCGCATACTTGAATGTACATGCAT
ATTTATTGCTTACACGTGTTTGCCATGTTGTTCACGGGTCCTTTCCAACCCGAGAGGTACGTTT
GTTTTGTTTTACCCAAAAATAAAAAAATCTGCCAAGTG

hide sequence

RefSeq Acc Id:

XM_008761620 ⟹ XP_008759842

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	29,553,391 - 29,565,919 (+)	NCBI
mRatBN7.2	3	9,155,290 - 9,167,828 (+)	NCBI
Rnor_6.0	3	3,781,786 - 3,794,360 (+)	NCBI

Sequence:

show sequence

GAGTGTACAGGATCGGGAAGCAGGGAGAGAACTGGGCTTGGCTGAGGCAGTTGAGATGGGCTGG
GCCCGCCTCCTGTGGACTGTCCGGAGCTAGGCTAGGCAGGTGCACATCCAGAGTCAGTGAGAGT
GGTTCTGGTACAGGGGGCTAGGCGGGCACCCCAAAGAGCACACACCCAGAAGGGTTGGGGATGG
ATGGCCTCCTGGGGTTAGGGAATTCGTTCTGCCTGGGCCAGAGGGAAGTCAGAGCCAGAGAGCA
TGGCATTCCGTTGTTGGGCTCAGTCTGGTACGATATTTACATGAGGCTGTGGCCTGTGGGACTT
CAGGACAAGGTACTCATTGATGGCTTGAAAGAGTGGGAGTGGTTTGAGTGGGCAGCAGGCAGAA
CCATGTATGTGGGCGTTGGGCAGGGAGTGCTGTGTGTTTTGTAGAGTGGTACTTGGAGCATGGT
GGGCATTGTAGGTGTGATGGTGACTTGAGGCAGGGCAAAGGCACAGTCTTGTTTTTTATTTCGT
TTGTATGTTTTTCTGATTTGATCGGTGTAAACAAGGGACTCTTGTGCAGGAGGATAGATCCTGA
CAGCCGGAGGCCTTACCTCCCCTTGGTGGTGCATTCTCAGTCAATAAAGCAGCAGCAGACTGTG
TTCTAGTCAGTGGGGATTCTACCCTGCCCTCTGCTTCCCCTGCTCAGTCTCTCTGGTCGTGTGG
CTGTCTGAGACCCTGATATACGGCACACTTGTGCCGTGCGTAGGCTGTAGTAGTACAAGGAGCA
TGCAGGCAGTTTCTGTTTGCCCTTTGAGGAACATGCAAGGGAGAAGGGATGCTAGCCTTGGCTA
GCCCTGGCTAGCCCTGCCAGACTTGATGGGCCTGGGTTAAACCGCCCCCTTCCCAGTGACAAAA
TATAAGCCCTCTGCTCTGATGGTCTGCAGTCCTTCTCATCCTTTGGGCTCAGTATTGCAGTATC
AGCCTAGGGCAGCTCCCTGAGGTCCTGTGTCCTACAGGCCTTTCTTCACCTCTGGGTCAGGGAT
ATGCTTGGCATGGTGTCTGAGGGGAGGTGTAGGCTGTGGGCTCTACAGCCCTGGCCCTGTCTGC
TGCAGTCCCCATACCTCAGTGCCCTATCCAGGAGGAGGGTTCACTAATAGTGCTGAGGGTGACA
GGGGCAACCGGCCTGAGTGCTGAGCCTCCTATGCAGAAGTGTCTGCCGCTGTTGGGGGCCCTGT
GGAGGGCCTTATGGGCCTGCAGACCCAGTAGAGGGGAGATCTGTAGGTCTATCCAGGAGCTCAC
TGTACTTCTAGCATGGAGAAGGGACTAAAAGGACAGGCGAGGGACTGACACAGGGAGAAAGGGG
CCAGTGTCTAGATCTGTATAGTTAAGACTACCAGTAAGAGCCACCATGAACTCTGGATGCATTG
GAGCGAGGACTGGACGAGGAACACTCGTGGGTTTGGATGGTCCCCCTCAGACGTAAAGGACAGG
GGCCTCCACGAGACAGTGACCATCCACCTTGGGCAGATAGGCATAATGGAGAAGTGTCCAGATC
TTGTACTGTAGGCAGGAAGCTGAAGGAGGGGTCAAGGTCTGAGGCCTCAGTGGGTGTGGCTCAG
CCGAGGAGGCATGGTCATTTGCACTGGCCTGACCTGACTTTTGACTCTAGACAGAGGATCCATT
CATTTAACTGGGCTCAGCAGGCTTCCCGCCCTGTCTGTCTGTGCACAAGGAGGTGCCCTTCCCG
AGCCAGCTTGTAGGCTCTGGTTCAGAAAGACTGCTTGGGCCCTCTCTGCTCTCCAGAGGACACA
TCTAGTAGTTCAGAGCAAGACCCAAAAGGACACAGAGGCTGAGTGCGGAGACCTGGGACCTGCT
GCGGCTCCCCCTGGACCGGGAGCAAAATGGAGAGACCCACCACACAGGGGACTGGAGGGGTCCA
AGCAGGGACTCGCTTCCTCTCCCCATGAGGAGCAGGAAGTACCAGGAAGGTCCAGATGCCATTG
AGAGGAGACCCCGGGAGGGTAGCCACTCTCCACTGGACAGTGCTGATGTAAGGGTACAGGTGCC
TCGCACGGGTATCCCCAGGGCCCCGTCCTCTGACGAGGAGTGTTTCTTCGATCTGCTGAGTAAG
TTCCAGAGCAGTCGTATGGATGACCAACGCTGTCCCCTGGAGGAAGGCCAGGCTGGGGCTGCTG
AGGCTACAGCTGCCCCAACCCTGGAGGAGAGAGCGGCTCAGCCCTCTGTAACAGCTTCACCACA
GACTGAAGAGTTCTTTGACCTCATTGCCAGCTCCCAGAGCCGCCGGCTGGATGACCAGAGGGCT
AGCGTAGGCAGCCTGCCTGGGCTTCGCATCACCCTCAACAACGTGGGGCACCTCCGAGGCGACG
GGGACCCCCAGGAGCCAGGGGATGAGTTTTTCAACATGCTTATCAAATACCAGTCCTCCAGGAT
TGATGACCAGCGCTGTCCACCCCCTGATGTGCTGCCCCGAGGCCCCACCATGCCTGATGAGGAT
TTCTTCAGCCTTATCCAGAGGGTGCAGGCTAAGCGGATGGATGAGCAGCGTGTGGACCTGGCTG
GGAGTCCAGACCAAGAGGCCAGTGGGCTGCCTGATCCCCGGCAGCAATGTCCGCCAGGTGCCAG
CTAAGGCCTCACCCCTACAGCCAGCCATGCCCTACTCTGGACTCTGTAGGCTCACAGTTGTCCA
CAGTGGCCATGACCCCCCAGTAAGCCAAATCCTCCCAAGGCCATGATGGAGAGCCAGCTCAGCC
CCAACCCCTTCCTCCCACTGAGCCAGATGGTGGGCACACACCCCTCAAGAACCCCCCACCCTAG
GTGGTGGGCTCAGGCTAGAGCTGCTGTATGGGGGAGGGCATGCTTCTGTCCCCATATGATCCAC
AGCTTAACTGCAGGCCCTGCCCTGCCCTGTCCTGCCCCAGGCCGGGCCTTCAGCATGTTGGCCC
CAAGCCCCGGTGCTGTCCAGAGTCTTCTCCCTCAAGCCCTGCCCTGCCAAATGTGAAATTCTGC
CAACTCTCCCAAGCTCCCCAGAGGGGTTTCAAAGACTTCTGGTGGGGGCTACAGTGGCAAGGCA
TCTTCTGTCCCCCAGCTGGTCCTGGGACGGCTATGAAGGAGGTACACTGCTCTGCCTCACCTCC
CCAGGGCAGGCCTATCCTGGTTGTGGCAGGCCTGGCTGTGCCCAACCCTGCTGTGGGAGATTGG
CGGCTGTGAAGTCCAGATACCCTGACCTGATAGTCTCCAGACTTGTACTTGGCCTTTGAGAAAA
GCTGGACCCCGCCTCTGGCAGCGGGAAGAGGCAAGCCTCCAAGCCAAGAGCATAGGGTCTTGTC
CTAGGAGTGCTTGGCTGGCAGTGGACATTCATGAGGAATCTGCTCTACTAGATCCTCCAGGCCT
CTTGGTGAACATCTACCTTGGATTACTAGGGAGATGGTATCTTGGCTTTCTCCCCAAGGAGGGG
TCCAGCTGCAATATCTGAGTTGGACATAGGGCACTATAGCTGGGGTGGAGAGACTCAGGCAGAA
CTGAGAACTACATCCATGAGATAGACCCTTGGGGACCGTGGTCCTATTTCTTGCCTGCAGGCAC
TATAGGCAGCCCTCCTGGAGGGCTCTGTACAACCTTCTAACCCAGAGCCTCTTACCCTGTAGCC
TAGGAGGGAGCCAGGGCAAGGGCAACTGGGGACCCAACTTCTGAGAGAGAGAGACACCATCACT
CTGAGGGCAGAAGCGGAAACCAGAGCACAGGGTCTCGGGCGGGACACGGTGGCCGCCCGCATAC
TTGAATGTACATGCATATTTATTGCTTACACGTGTTTGCCATGTTGTTCACGGGTCCTTTCCAA
CCCGAGAGGTACGTTTGTTTTGTTTTACCCAAAAATAAAAAAATCTGCCAAGTGGA

hide sequence

RefSeq Acc Id:

XM_017591463 ⟹ XP_017446952

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	29,551,363 - 29,565,919 (+)	NCBI
mRatBN7.2	3	9,153,262 - 9,167,828 (+)	NCBI
Rnor_6.0	3	3,780,409 - 3,794,360 (+)	NCBI

Sequence:

show sequence

CAACAAGGCCACACCCCTCCAAGGCCACACCTCCTCCAACAAGGCCACCCTTCTTAATCTTTCC
TAGACAATTCCACTATCAGGGATACAAATGTGTCCATGAGGGCCATTCTTGTTCAAACCACCAC
AAAGGACAGCTGAAAGGTGGGGCCAGAATGATAGGTCATAGGGTAGTAACACCAGTGGCAGAGG
GCTGGTGGTCAGTTATTCATACCCTTGAGAGAAAGAGACGCTGGTCTCCTAGAGCCCCTCCCTC
CCATGATCCTAATTTACCACAGGACTGCTGGTAAGAAGACAGAAAATGACACCTTCCTAAGCAG
CCCGGCAGGCAGCGCCCATCATCATACTCTGGGGAAGGGGCTGTCGTCTGGGAAGCTGGAGGGC
GTCTGAGAGGCTGGAGGGAGCCGGTCAGTACCTGCCTGGAGTACTAATCAGGCTGAGGCACTTC
AGTGACCTCATTCAGACTGCTGACTGTCCCCATGCGGGTCAGACCCATAGTGAATGAATAAGAG
GACAGAATGTTCCCCACAGAGCAAATACATTAGTACGTACATAGGAGGGGCTGAGTGGATGCAG
GGTGTCATGCTGACTTGGCTTCTTGAGGCCCATAAGGCTCTAAGAGGAAGCGAGCGTCATCAGG
GAGCCCAGCCAGCTGCCCCCTGCTTATCATTGAGTTTGCCAAGAATGGAGCCCCAGCTCCTCGT
GAGTTTTTCCAGGAGCGCCCACCGACTCCAGCCTCTTAGGCCATTCAGAAGGGACACTTCCTAC
CATGAGAACCCCTGGTTCCTCAAGCCTGGAATTTCTCAGTATGACCTGGCCTGGATAATAAGGC
TGGGGACAGAGGGGAGGAGCAAAGGCTTCTGGGACCCTTAGCCACTCGGTGCGGCAAGAGATAC
AGTGGCTAATGTGTGGGATGGGGTTGCACAGGCTGTGGTTTCCCAGGGTAGATAGATCTGTACA
AAGCCTCTAGCACAGCCCTCAGCCCCCGTAGCCTGAGCAGAGCTGGCCAGCTTCTGGAAAGATT
CCCACAGAGGCGGCCAGCTCCTCATCCTAACTGAACCTCCAAGCTAAGCGAAAAGGGGGGGTAA
GTCACAAGTAAATGGTGAGGGACAAGGCAGCTCTGTCCTCCCCACGTTGGCTCCTCTGCTCTGC
CTTGCATGCCAGACCCTTCCCAGCTGGGGCCCCCGGAAGCCACCTCCCCGCAGGGCTTCTTGTG
TCCAACGGCTGGGTCCTGGATGCTGGGAAATAGTCTGTCCAAGGAGGACATCGGGGAGAGGGCT
CTGCTACCCTGAATTTCTGGGATGCAGTTGCTGAAGGCAGGCCGGCACTGTGAGAGTCTGAGTG
GTCCTGAGGGAGCCCCCTACTCAGGAGCAAGACCCAAAAGGACACAGAGGCTGAGTGCGGAGAC
CTGGGACCTGCTGCGGCTCCCCCTGGACCGGGAGCAAAATGGAGAGACCCACCACACAGGGGAC
TGGAGGGGTCCAAGCAGGGACTCGCTTCCTCTCCCCATGAGGAGCAGGAAGTACCAGGAAGGTC
CAGATGCCATTGAGAGGAGACCCCGGGAGGGTAGCCACTCTCCACTGGACAGTGCTGATGTAAG
GGTACAGGTGCCTCGCACGGGTATCCCCAGGGCCCCGTCCTCTGACGAGGAGTGTTTCTTCGAT
CTGCTGAGTAAGTTCCAGAGCAGTCGTATGGATGACCAACGCTGTCCCCTGGAGGAAGGCCAGG
CTGGGGCTGCTGAGGCTACAGCTGCCCCAACCCTGGAGGAGAGAGCGGCTCAGCCCTCTGTAAC
AGCTTCACCACAGACTGAAGAGTTCTTTGACCTCATTGCCAGCTCCCAGAGCCGCCGGCTGGAT
GACCAGAGGGCTAGCGTAGGCAGCCTGCCTGGGCTTCGCATCACCCTCAACAACGTGGGGCACC
TCCGAGGCGACGGGGACCCCCAGGAGCCAGGGGATGAGTTTTTCAACATGCTTATCAAATACCA
GTCCTCCAGGATTGATGACCAGCGCTGTCCACCCCCTGATGTGCTGCCCCGAGGCCCCACCATG
CCTGATGAGGATTTCTTCAGCCTTATCCAGAGGGTGCAGGCTAAGCGGATGGATGAGCAGCGTG
TGGACCTGGCTGGGAGTCCAGACCAAGAGGCCAGTGGGCTGCCTGATCCCCGGCAGCAATGTCC
GCCAGGTGCCAGCTAAGGCCTCACCCCTACAGCCAGCCATGCCCTACTCTGGACTCTGTAGGCT
CACAGTTGTCCACAGTGGCCATGACCCCCCAGTAAGCCAAATCCTCCCAAGGCCATGATGGAGA
GCCAGCTCAGCCCCAACCCCTTCCTCCCACTGAGCCAGATGGTGGGCACACACCCCTCAAGAAC
CCCCCACCCTAGGTGGTGGGCTCAGGCTAGAGCTGCTGTATGGGGGAGGGCATGCTTCTGTCCC
CATATGATCCACAGCTTAACTGCAGGCCCTGCCCTGCCCTGTCCTGCCCCAGGCCGGGCCTTCA
GCATGTTGGCCCCAAGCCCCGGTGCTGTCCAGAGTCTTCTCCCTCAAGCCCTGCCCTGCCAAAT
GTGAAATTCTGCCAACTCTCCCAAGCTCCCCAGAGGGGTTTCAAAGACTTCTGGTGGGGGCTAC
AGTGGCAAGGCATCTTCTGTCCCCCAGCTGGTCCTGGGACGGCTATGAAGGAGGTACACTGCTC
TGCCTCACCTCCCCAGGGCAGGCCTATCCTGGTTGTGGCAGGCCTGGCTGTGCCCAACCCTGCT
GTGGGAGATTGGCGGCTGTGAAGTCCAGATACCCTGACCTGATAGTCTCCAGACTTGTACTTGG
CCTTTGAGAAAAGCTGGACCCCGCCTCTGGCAGCGGGAAGAGGCAAGCCTCCAAGCCAAGAGCA
TAGGGTCTTGTCCTAGGAGTGCTTGGCTGGCAGTGGACATTCATGAGGAATCTGCTCTACTAGA
TCCTCCAGGCCTCTTGGTGAACATCTACCTTGGATTACTAGGGAGATGGTATCTTGGCTTTCTC
CCCAAGGAGGGGTCCAGCTGCAATATCTGAGTTGGACATAGGGCACTATAGCTGGGGTGGAGAG
ACTCAGGCAGAACTGAGAACTACATCCATGAGATAGACCCTTGGGGACCGTGGTCCTATTTCTT
GCCTGCAGGCACTATAGGCAGCCCTCCTGGAGGGCTCTGTACAACCTTCTAACCCAGAGCCTCT
TACCCTGTAGCCTAGGAGGGAGCCAGGGCAAGGGCAACTGGGGACCCAACTTCTGAGAGAGAGA
GACACCATCACTCTGAGGGCAGAAGCGGAAACCAGAGCACAGGGTCTCGGGCGGGACACGGTGG
CCGCCCGCATACTTGAATGTACATGCATATTTATTGCTTACACGTGTTTGCCATGTTGTTCACG
GGTCCTTTCCAACCCGAGAGGTACGTTTGTTTTGTTTTACCCAAAAATAAAAAAATCTGCCAAG
TGGA

hide sequence

RefSeq Acc Id:

XM_039104257 ⟹ XP_038960185

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	29,538,929 - 29,564,440 (+)	NCBI
mRatBN7.2	3	9,140,816 - 9,166,347 (+)	NCBI

RefSeq Acc Id:

XM_039104258 ⟹ XP_038960186

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	29,547,452 - 29,565,919 (+)	NCBI
mRatBN7.2	3	9,149,359 - 9,167,828 (+)	NCBI

RefSeq Acc Id:

XM_063283082 ⟹ XP_063139152

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	29,560,277 - 29,565,919 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001138941	(Get FASTA)	NCBI Sequence Viewer
	NP_653346	(Get FASTA)	NCBI Sequence Viewer
	XP_006233732	(Get FASTA)	NCBI Sequence Viewer
	XP_008759842	(Get FASTA)	NCBI Sequence Viewer
	XP_017446952	(Get FASTA)	NCBI Sequence Viewer
	XP_038960185	(Get FASTA)	NCBI Sequence Viewer
	XP_038960186	(Get FASTA)	NCBI Sequence Viewer
	XP_063139152	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF08683	(Get FASTA)	NCBI Sequence Viewer
	AAH86535	(Get FASTA)	NCBI Sequence Viewer
	AAN01268	(Get FASTA)	NCBI Sequence Viewer
	EDL93512	(Get FASTA)	NCBI Sequence Viewer
	EDL93513	(Get FASTA)	NCBI Sequence Viewer
	EDL93514	(Get FASTA)	NCBI Sequence Viewer
	EDL93515	(Get FASTA)	NCBI Sequence Viewer
	EDL93516	(Get FASTA)	NCBI Sequence Viewer
	EDL93517	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000062075.1
	ENSRNOP00000070079.2
	ENSRNOP00000079739.1
	ENSRNOP00000084484.1
	ENSRNOP00000089684.1
	ENSRNOP00000094743.1
GenBank Protein	Q9R080	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_653346 ⟸ NM_144745
- Peptide Label:	isoform a
- UniProtKB:	Q8K3E2 (UniProtKB/Swiss-Prot), Q9R080 (UniProtKB/Swiss-Prot), G3V9X2 (UniProtKB/TrEMBL), A6JTD0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASPAPPAAEELPGPAARRLYSRMEASCLELALEGERLCKAGDFKAGVAFFEAAVQVGTEDLKT LSAIYSQLGNAYFYLKEYARALQFHKHDLLLARTIGDRMGEAKASGNLGNTLKVLGRFDEAIVC CQRHLDIAQEQGDKVGEARALYNIGNVYHAKGKQLSWNAAQDPGHLPPDVRETLHRASEFYERN LSLVKELGDRAAQGRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDKAAERRAYSNLGNAH IFLGRFDVAAEHYKKTLQLSRQLRDQAVEAQACYSLGNTYTLLQDYERAAEYHLRHLVIAQELA DRVGEGRACWSLGNAYVSMGSPAQALTFAKKHLQISQEIGDRNGELTARMNIAHLQLALGRLTS PAAAEKPDLAGYEAQGARPKRTQRLSAETWDLLRLPLDREQNGETHHTGDWRGPSRDSLPLPMR SRKYQEGPDAIERRPREGSHSPLDSADVRVQVPRTGIPRAPSSDEECFFDLLSKFQSSRMDDQR CPLEEGQAGAAEATAAPTLEERAAQPSVTASPQTEEFFDLIASSQSRRLDDQRASVGSLPGLRI TLNNVGHLRGDGDPQEPGDEFFNMLIKYQSSRIDDQRCPPPDVLPRGPTMPDEDFFSLIQRVQA KRMDEQRVDLAGSPDQEASGLPDPRQQCPPGAS hide sequence

RefSeq Acc Id:	NP_001138941 ⟸ NM_001145469
- Peptide Label:	isoform b
- UniProtKB:	A6JTD5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDDQRCPLEEGQAGAAEATAAPTLEERAAQPSVTASPQTEEFFDLIASSQSRRLDDQRASVGSL PGLRITLNNVGHLRGDGDPQEPGDEFFNMLIKYQSSRIDDQRCPPPDVLPRGPTMPDEDFFSLI QRVQAKRMDEQRVDLAGSPDQEASGLPDPRQQCPPGAS hide sequence

RefSeq Acc Id:	XP_006233732 ⟸ XM_006233670
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6AC91 (UniProtKB/TrEMBL), A6JTD2 (UniProtKB/TrEMBL), A6JTD4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLASAMEGQPLALSLAEKAVCKVVYGAPRPRPLLLPVGLELWLYVQKMRNLQRKRMEASCLELA LEGERLCKAGDFKAGVAFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLKEYARALQFHKHDLLLA RTIGDRMGEAKASGNLGNTLKVLGRFDEAIVCCQRHLDIAQEQGDKVGEARALYNIGNVYHAKG KQLSWNAAQDPGHLPPDVRETLHRASEFYERNLSLVKELGDRAAQGRAYGNLGNTHYLLGNFTE ATTFHKERLAIAKEFGDKAAERRAYSNLGNAHIFLGRFDVAAEHYKKTLQLSRQLRDQAVEAQA CYSLGNTYTLLQDYERAAEYHLRHLVIAQELADRVGEGRACWSLGNAYVSMGSPAQALTFAKKH LQISQEIGDRNGELTARMNIAHLQLALGRLTSPAAAEKPDLAGYEAQGARPKRTQRLSAETWDL LRLPLDREQNGETHHTGDWRGPSRDSLPLPMRSRKYQEGPDAIERRPREGSHSPLDSADVRVQV PRTGIPRAPSSDEECFFDLLSKFQSSRMDDQRCPLEEGQAGAAEATAAPTLEERAAQPSVTASP QTEEFFDLIASSQSRRLDDQRASVGSLPGLRITLNNVGHLRGDGDPQEPGDEFFNMLIKYQSSR IDDQRCPPPDVLPRGPTMPDEDFFSLIQRVQAKRMDEQRVDLAGSPDQEASGLPDPRQQCPPGA S hide sequence

RefSeq Acc Id:	XP_008759842 ⟸ XM_008761620
- Peptide Label:	isoform X3
- UniProtKB:	A0A8L2R2Q0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSRKYQEGPDAIERRPREGSHSPLDSADVRVQVPRTGIPRAPSSDEECFFDLLSKFQSSRMDD QRCPLEEGQAGAAEATAAPTLEERAAQPSVTASPQTEEFFDLIASSQSRRLDDQRASVGSLPGL RITLNNVGHLRGDGDPQEPGDEFFNMLIKYQSSRIDDQRCPPPDVLPRGPTMPDEDFFSLIQRV QAKRMDEQRVDLAGSPDQEASGLPDPRQQCPPGAS hide sequence

RefSeq Acc Id:

XP_017446952 ⟸ XM_017591463

- Peptide Label:

isoform X2

- Sequence:

show sequence

MQLLKAGRHCESLSGPEGAPYSGARPKRTQRLSAETWDLLRLPLDREQNGETHHTGDWRGPSRD
SLPLPMRSRKYQEGPDAIERRPREGSHSPLDSADVRVQVPRTGIPRAPSSDEECFFDLLSKFQS
SRMDDQRCPLEEGQAGAAEATAAPTLEERAAQPSVTASPQTEEFFDLIASSQSRRLDDQRASVG
SLPGLRITLNNVGHLRGDGDPQEPGDEFFNMLIKYQSSRIDDQRCPPPDVLPRGPTMPDEDFFS
LIQRVQAKRMDEQRVDLAGSPDQEASGLPDPRQQCPPGAS

hide sequence

Ensembl Acc Id:

ENSRNOP00000062075 ⟸ ENSRNOT00000067840

Ensembl Acc Id:

ENSRNOP00000070079 ⟸ ENSRNOT00000084567

RefSeq Acc Id:	XP_038960185 ⟸ XM_039104257
- Peptide Label:	isoform X1
- UniProtKB:	Q9R080 (UniProtKB/Swiss-Prot), Q8K3E2 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038960186 ⟸ XM_039104258
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000079739 ⟸ ENSRNOT00000097564

Ensembl Acc Id:

ENSRNOP00000084484 ⟸ ENSRNOT00000118478

Ensembl Acc Id:

ENSRNOP00000089684 ⟸ ENSRNOT00000102548

Ensembl Acc Id:

ENSRNOP00000094743 ⟸ ENSRNOT00000111577

RefSeq Acc Id:	XP_063139152 ⟸ XM_063283082
- Peptide Label:	isoform X4
- UniProtKB:	A6JTD5 (UniProtKB/TrEMBL)

Protein Domains

GoLoco

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9R080-F1-model_v2	AlphaFold	Q9R080	1-673	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691900

Promoter ID:

EPDNEW_R2425

Type:

single initiation site

Name:

Gpsm1_1

Description:

G-protein signaling modulator 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	3,788,566 - 3,788,626	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:628682	AgrOrtholog
BioCyc Gene	G2FUF-50388	BioCyc
Ensembl Genes	ENSRNOG00000018666	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000067840.3	UniProtKB/TrEMBL
	ENSRNOT00000084567.2	UniProtKB/TrEMBL
	ENSRNOT00000097564.1	UniProtKB/TrEMBL
	ENSRNOT00000102548.1	UniProtKB/TrEMBL
	ENSRNOT00000111577.1	UniProtKB/TrEMBL
	ENSRNOT00000118478.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	GoLoco_motif	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPSM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TPR-like_helical_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TPR_repeat	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:246254	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	246254	ENTREZGENE
PANTHER	G-PROTEIN-SIGNALING MODULATOR 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LD33695P	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	GoLoco	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TPR_10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TPR_12	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Gpsm1	PhenoGen
PROSITE	GOLOCO	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TPR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TPR_REGION	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000018666	RatGTEx
SMART	GoLoco	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TPR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF48452	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZNN7_RAT	UniProtKB/TrEMBL
	A0A8I5ZZF6_RAT	UniProtKB/TrEMBL
	A0A8I6AC91	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AMW5_RAT	UniProtKB/TrEMBL
	A0A8L2R2Q0	ENTREZGENE, UniProtKB/TrEMBL
	A6JTD0	ENTREZGENE, UniProtKB/TrEMBL
	A6JTD1_RAT	UniProtKB/TrEMBL
	A6JTD2	ENTREZGENE, UniProtKB/TrEMBL
	A6JTD3_RAT	UniProtKB/TrEMBL
	A6JTD4	ENTREZGENE, UniProtKB/TrEMBL
	A6JTD5	ENTREZGENE, UniProtKB/TrEMBL
	G3V9X2	ENTREZGENE, UniProtKB/TrEMBL
	GPSM1_RAT	UniProtKB/Swiss-Prot
	Q8K3E2	ENTREZGENE
	Q9R080	ENTREZGENE
UniProt Secondary	Q8K3E2	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-02	Gpsm1	G-protein signaling modulator 1	Gpsm1	G-protein signaling modulator 1 (AGS3-like, C. elegans)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-30	Gpsm1	G-protein signaling modulator 1 (AGS3-like, C. elegans)	Gpsm1	G-protein signalling modulator 1 (AGS3-like, C. elegans)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Gpsm1	G-protein signalling modulator 1 (AGS3-like, C. elegans)	Ags3	activator of G-protein signaling 3	Symbol and Name updated	1299863	APPROVED
2003-02-27	Ags3	activator of G-protein signaling 3			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains four G-protein regulatory motifs that may bind G-protein alpha subunits	631949
gene_physical_interaction	binds to Galpha and showed a preference for GalphaGDP versus GalphaGTPgammaS	631950

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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