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ONTOLOGY REPORT - ANNOTATIONS

Term:process utilizing autophagic mechanism
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Accession:GO:0061919 term browser browse the term
Definition:A cellular process involving delivery of a portion of the cytoplasm to lysosomes or to the plant or fungal vacuole that does not involve direct transport through the endocytic or vacuolar protein sorting (Vps) pathways. This process typically leads to degradation of the cargo; however, it can also be used to deliver resident proteins, such as in the cytoplasm-to-vacuole targeting (Cvt) pathway.


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aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg4a autophagy related 4A, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:109,453,712...109,553,758
Ensembl chr  X:109,453,689...109,553,760 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:101,729,772...101,761,456
Ensembl chr 9:101,726,782...101,761,622 		JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:118,977,594...119,050,894
Ensembl chr 5:118,982,918...119,052,695 		JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:28,083,902...28,093,491
Ensembl chr 8:28,083,936...28,093,491 		JBrowse link
G Atg5 autophagy related 5 involved_in IEA
IBA
ISO 		GO_REF:0000107
GO_REF:0000033
(PMID:22982048) 		Ensembl
GO_Central
RGD		 PMID:22982048 GO_REF:0000033 GO_REF:0000107 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:49,380,813...49,471,821 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 acts_upstream_of_or_within ISO (PMID:17580304), (PMID:22017874), (PMID:31857589) RGD PMID:17580304 PMID:22017874 PMID:31857589 NCBI chr 3:161,170,295...161,217,073
Ensembl chr 3:161,170,405...161,215,698 		JBrowse link
G Hdac6 histone deacetylase 6 acts_upstream_of_or_within ISO (PMID:17580304), (PMID:22017874), (PMID:31857589) RGD PMID:17580304 PMID:22017874 PMID:31857589 NCBI chr  X:17,222,538...17,244,373
Ensembl chr  X:17,222,856...17,244,370 		JBrowse link
G Kat5 lysine acetyltransferase 5 acts_upstream_of_or_within ISO (PMID:17580304), (PMID:22017874), (PMID:31857589) RGD PMID:17580304 PMID:22017874 PMID:31857589 NCBI chr 1:212,325,089...212,332,640
Ensembl chr 1:212,325,090...212,332,587 		JBrowse link
G Lypla1 lysophospholipase 1 acts_upstream_of_or_within ISO (PMID:17580304) RGD PMID:17580304 NCBI chr 5:19,477,408...19,506,568
Ensembl chr 5:19,477,409...19,506,522 		JBrowse link
G Sqstm1 sequestosome 1 involved_in
acts_upstream_of_or_within 		ISS
ISO
IEA
IBA 		GO_REF:0000024
(PMID:17580304)
GO_REF:0000107
(PMID:25723488), (PMID:33397898)
GO_REF:0000033
UniProtKB:Q562E7 (PMID:17580304), (PMID:22017874), (PMID:28404643), (PMID:29343546), (PMID:29507397), (PMID:31857589), (PMID:37306101), (PMID:37802024) 		UniProt
RGD
Ensembl
GO_Central		 PMID:17580304 PMID:22017874 PMID:25723488 PMID:28404643 PMID:29343546 More... GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:35,026,598...35,037,750
Ensembl chr10:35,026,598...35,037,750 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA
ISS
ISO 		GO_REF:0000107
GO_REF:0000024
(PMID:21143716) 		Ensembl
UniProt
RGD		 PMID:21143716 GO_REF:0000024 GO_REF:0000107 NCBI chr17:6,438,456...6,482,498
Ensembl chr17:6,444,124...6,482,499 		JBrowse link
G Wdfy3 WD repeat and FYVE domain containing 3 involved_in ISO
IEA
IBA 		(PMID:20168092), (PMID:20417604)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:20168092 PMID:20417604 GO_REF:0000033 GO_REF:0000107 NCBI chr14:7,873,946...8,115,002
Ensembl chr14:7,911,151...8,114,993 		JBrowse link
G Wdr81 WD repeat domain 81 involved_in ISS
IBA
IEA
ISO 		GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:28404643) 		UniProt
GO_Central
Ensembl
RGD		 PMID:28404643 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:60,780,268...60,793,671
Ensembl chr10:60,780,268...60,793,592 		JBrowse link
G Zdhhc19 zinc finger DHHC-type palmitoyltransferase 19 acts_upstream_of_or_within ISO (PMID:17580304) RGD PMID:17580304 NCBI chr11:81,782,899...81,794,105
Ensembl chr11:81,782,903...81,794,008 		JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:20921139), (PMID:25215947)
(PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:28890335), (PMID:30778222), (PMID:33637724)
GO_REF:0000107
GO_REF:0000033
(PMID:23524951) 		RGD
Ensembl
GO_Central		 PMID:20713597 PMID:20921139 PMID:23202584 PMID:23392225 PMID:23524951 More... GO_REF:0000033 GO_REF:0000107 NCBI chr 3:98,156,626...98,345,876
Ensembl chr 3:98,156,652...98,345,872 		JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in ISO
IEA
ISS 		(PMID:29180427)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:29180427 GO_REF:0000024 GO_REF:0000107 NCBI chr12:22,163,474...22,171,734
Ensembl chr12:22,163,466...22,171,731 		JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within ISO MGI:4460281 (PMID:30930081) RGD PMID:30930081 NCBI chr12:17,207,315...17,222,975
Ensembl chr12:17,207,315...17,222,467 		JBrowse link
G Atg10 autophagy related 10 involved_in
acts_upstream_of_or_within 		ISO
IBA 		(PMID:16963840)
(PMID:23202584)
GO_REF:0000033 		RGD
GO_Central		 PMID:16963840 PMID:23202584 GO_REF:0000033 NCBI chr 2:23,843,695...24,133,459
Ensembl chr 2:23,844,482...24,133,368 		JBrowse link
G Atg101 autophagy related 101 involved_in ISO
IBA 		(PMID:19225151), (PMID:19597335)
GO_REF:0000033 		RGD
GO_Central		 PMID:19225151 PMID:19597335 GO_REF:0000033 NCBI chr 7:134,277,223...134,286,387
Ensembl chr 7:134,272,847...134,286,379 		JBrowse link
G Atg12 autophagy related 12 involved_in IEA
IBA
ISO 		GO_REF:0000002
GO_REF:0000033
(PMID:11266458) 		InterPro
GO_Central
RGD		 PMID:11266458 GO_REF:0000002 GO_REF:0000033 NCBI chr18:41,638,841...41,649,311
Ensembl chr18:41,635,835...41,649,261 		JBrowse link
G Atg13 autophagy related 13 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:19211835), (PMID:19225151)
(PMID:19211835), (PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:28890335), (PMID:30778222), (PMID:33637724)
GO_REF:0000107
GO_REF:0000002
(PMID:19225151), (PMID:19258318) 		RGD
Ensembl
InterPro		 PMID:19211835 PMID:19225151 PMID:19258318 PMID:20713597 PMID:23202584 More... GO_REF:0000002 GO_REF:0000107 NCBI chr 3:98,102,831...98,136,741
Ensembl chr 3:98,101,552...98,136,743 		JBrowse link
G Atg14 autophagy related 14 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:19270696), (PMID:20713597)
(PMID:25891078), (PMID:33637724)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:19270696 PMID:20713597 PMID:25891078 PMID:33637724 GO_REF:0000033 GO_REF:0000107 NCBI chr15:23,275,457...23,306,817
Ensembl chr15:23,275,457...23,306,815 		JBrowse link
G Atg16l1 autophagy related 16-like 1 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:30778222)
(PMID:23202584)
GO_REF:0000117
GO_REF:0000107
GO_REF:0000002
(PMID:11266458)
GO_REF:0000033 		RGD
UniProt
Ensembl
InterPro
GO_Central		 PMID:11266458 PMID:23202584 PMID:30778222 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 9:95,869,839...95,905,354
Ensembl chr 9:95,869,865...95,905,357 		JBrowse link
G Atg16l2 autophagy related 16-like 2 NOT|involved_in ISO (PMID:22082872)
(PMID:11266458) 		RGD PMID:11266458 PMID:22082872 NCBI chr 1:165,100,946...165,123,307
Ensembl chr 1:165,102,936...165,115,473 		JBrowse link
G Atg2a autophagy related 2A involved_in ISO
IEA
IBA 		(PMID:28561066)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:28561066 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:212,971,822...212,991,505
Ensembl chr 1:212,971,844...212,991,528 		JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:130,286,979...130,357,109
Ensembl chr 6:130,286,986...130,357,109 		JBrowse link
G Atg3 autophagy related 3 involved_in
acts_upstream_of_or_within 		ISS
ISO
IBA
IEA 		GO_REF:0000024
(PMID:20723759), (PMID:24747438)
(PMID:21220506)
GO_REF:0000033
GO_REF:0000107
(PMID:33446636) 		UniProt
RGD
GO_Central
Ensembl		 PMID:20723759 PMID:21220506 PMID:24747438 PMID:33446636 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr11:69,130,948...69,159,280
Ensembl chr11:69,121,952...69,159,280 		JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in ISO
IEA
IBA 		(PMID:21177865)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:21177865 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:109,453,712...109,553,758
Ensembl chr  X:109,453,689...109,553,760 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:21177865)
(PMID:24290141)
GO_REF:0000107
(PMID:25578879)
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:21177865 PMID:24290141 PMID:25578879 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:101,729,772...101,761,456
Ensembl chr 9:101,726,782...101,761,622 		JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:21177865)
(PMID:24290141)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:21177865 PMID:24290141 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:118,977,594...119,050,894
Ensembl chr 5:118,982,918...119,052,695 		JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in
acts_upstream_of_or_within 		ISO
IBA 		(PMID:21177865)
(PMID:24290141)
GO_REF:0000033 		RGD
GO_Central		 PMID:21177865 PMID:24290141 GO_REF:0000033 NCBI chr 8:28,083,902...28,093,491
Ensembl chr 8:28,083,936...28,093,491 		JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within 		IMP
IEA
IBA
ISO 		GO_REF:0000117
GO_REF:0000033
(PMID:11266458)
(PMID:23704209)
GO_REF:0000107
(PMID:23202584) 		UniProt
GO_Central
RGD
Ensembl		 PMID:11266458 PMID:23202584 PMID:23704209 PMID:16420522 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117, RGD:1643189 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:49,380,813...49,471,821 		JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within 		ISO
IBA
IEA 		(PMID:22170151)
(PMID:33446636), (PMID:37943659)
GO_REF:0000033
(PMID:20080761)
(PMID:23704209)
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:20080761 PMID:22170151 PMID:23704209 PMID:33446636 PMID:37943659 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:149,391,390...149,598,319 		JBrowse link
G Atg9a autophagy related 9A acts_upstream_of_or_within
involved_in 		ISO
ISS 		(PMID:15755735), (PMID:22456507)
MGI:4417824 (PMID:22456507), (PMID:23402761)
GO_REF:0000024
(PMID:29180427), (PMID:29437695), (PMID:32513819), (PMID:33468622) 		RGD
UniProt		 PMID:15755735 PMID:22456507 PMID:23402761 PMID:29180427 PMID:29437695 More... GO_REF:0000024 NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:84,126,071...84,136,666 		JBrowse link
G Atg9b autophagy related 9B acts_upstream_of_or_within ISO
IEA 		(PMID:15755735)
GO_REF:0000107 		RGD
Ensembl		 PMID:15755735 GO_REF:0000107 NCBI chr 4:11,678,548...11,686,097
Ensembl chr 4:11,678,299...11,686,079 		JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO (PMID:22170151), (PMID:37943659) RGD PMID:22170151 PMID:37943659 NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:62,727,291...62,828,629 		JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISS
IBA
ISO 		GO_REF:0000024
GO_REF:0000033
(PMID:28890335) 		UniProt
GO_Central
RGD		 PMID:28890335 GO_REF:0000024 GO_REF:0000033 NCBI chr12:39,733,519...39,782,942
Ensembl chr12:39,733,458...39,782,934 		JBrowse link
G Bag3 BAG cochaperone 3 involved_in IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr 1:192,533,460...192,557,281
Ensembl chr 1:192,475,828...192,557,280 		JBrowse link
G Becn1 beclin 1 acts_upstream_of_or_within
involved_in 		IMP
ISO
IEA
IBA
ISS 		(PMID:33637724)
GO_REF:0000107
(PMID:23332761)
GO_REF:0000033
(PMID:25891078)
GO_REF:0000024 		RGD
Ensembl
GO_Central
UniProt		 PMID:23332761 PMID:25891078 PMID:33637724 PMID:16420522 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107, RGD:1643189 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,731,650...86,747,002 		JBrowse link
G Becn2 beclin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:90,375,186...90,424,533
Ensembl chr13:90,375,186...90,378,488 		JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 1:254,159,085...254,324,819
Ensembl chr 1:254,159,124...254,328,357 		JBrowse link
G Chek2 checkpoint kinase 2 acts_upstream_of_or_within ISO (PMID:22170151), (PMID:37943659) RGD PMID:22170151 PMID:37943659 NCBI chr12:51,448,838...51,481,159
Ensembl chr12:51,449,140...51,480,667 		JBrowse link
G Csnk1a1 casein kinase 1, alpha 1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr18:57,285,156...57,320,540
Ensembl chr18:57,287,412...57,320,538 		JBrowse link
G Ctsd cathepsin D acts_upstream_of_or_within ISO
IEA 		(PMID:15452145)
GO_REF:0000107 		RGD
Ensembl		 PMID:15452145 GO_REF:0000107 NCBI chr 1:206,956,945...206,968,821
Ensembl chr 1:206,956,944...206,968,821 		JBrowse link
G Cul1 cullin 1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 4:77,551,781...77,634,210
Ensembl chr 4:77,551,787...77,621,760 		JBrowse link
G Deptor DEP domain containing MTOR-interacting protein acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 7:88,404,745...88,574,065
Ensembl chr 7:88,404,620...88,574,041 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO
IEA
IBA 		(PMID:21072319)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:21072319 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:198,777,323...198,856,497
Ensembl chr 2:198,777,323...198,856,497 		JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in ISO
IBA 		(PMID:23182941)
GO_REF:0000033 		RGD
GO_Central		 PMID:23182941 GO_REF:0000033 NCBI chr10:58,292,584...58,293,850
Ensembl chr10:58,292,470...58,298,885 		JBrowse link
G Ep300 E1A binding protein p300 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 7:114,987,857...115,058,652
Ensembl chr 7:114,946,982...115,058,574 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO
IEA 		MGI:2182627 (PMID:24430976)
GO_REF:0000107 		RGD
Ensembl		 PMID:24430976 GO_REF:0000107 NCBI chr 1:7,547,369...7,673,449
Ensembl chr 1:7,547,342...7,669,604 		JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:55,213,465...55,216,787
Ensembl chr10:55,212,075...55,216,154 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:164,666,332...164,675,474
Ensembl chr 4:164,666,246...164,674,578 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:56,819,826...56,830,662
Ensembl chr19:56,819,791...56,830,660 		JBrowse link
G Gabarapl3 GABA type A receptor associated protein like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:98,126,056...98,127,013 JBrowse link
G Gabarapl4 gamma-aminobutyric acid receptor associated protein like 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:71,949,837...71,950,435 JBrowse link
G Ifgga2l1 interferon-gamma-inducible GTPase 2 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:56,031,907...56,040,627
Ensembl chr18:55,957,699...56,046,772 		JBrowse link
G Ifgga2l2 interferon-gamma-inducible GTPase 2 like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:56,141,281...56,160,578
Ensembl chr18:56,141,275...56,160,722 		JBrowse link
G Ifgga4l interferon-gamma-inducible GTPase 4 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:56,108,872...56,125,302
Ensembl chr18:56,108,872...56,125,302 		JBrowse link
G Ifi47 interferon gamma inducible protein 47 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:33,798,744...33,806,374
Ensembl chr10:33,776,399...33,806,372 		JBrowse link
G Igtp interferon gamma induced GTPase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:42,875,047...42,882,866
Ensembl chr10:42,876,790...42,882,858 		JBrowse link
G Irgm immunity-related GTPase M involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:16888103)
(PMID:28890335)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:16888103 PMID:28890335 GO_REF:0000033 GO_REF:0000107 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,732,961...33,743,228 		JBrowse link
G Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 1:165,684,001...165,689,698
Ensembl chr 1:165,684,091...165,703,178 		JBrowse link
G LOC134483037 interferon-inducible GTPase 1-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:55,993,009...55,995,850 JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO
IEA
IBA
IDA 		(PMID:24290141)
GO_REF:0000107
GO_REF:0000033
PMID:11060023 		RGD
Ensembl
GO_Central		 PMID:24290141 PMID:11060023 GO_REF:0000033 GO_REF:0000107, RGD:8554284 NCBI chr 3:164,243,204...164,244,850
Ensembl chr 3:164,243,093...164,244,850 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO
IBA 		(PMID:37943659)
GO_REF:0000033 		RGD
GO_Central		 PMID:37943659 GO_REF:0000033 NCBI chr19:66,571,631...66,582,270
Ensembl chr19:66,574,407...66,584,358
Ensembl chr16:66,574,407...66,584,358 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:190,797,185...190,803,411 		JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of ISO MGI:2450997 (PMID:23695157) RGD PMID:23695157 NCBI chr 6:6,234,917...6,252,874
Ensembl chr 6:6,234,922...6,252,961 		JBrowse link
G Mtor mechanistic target of rapamycin kinase acts_upstream_of_or_within ISO (PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:28890335), (PMID:30778222), (PMID:33637724) RGD PMID:20713597 PMID:23202584 PMID:23392225 PMID:23524951 PMID:25891078 More... NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:164,167,928...164,277,435 		JBrowse link
G Nsfl1c NSFL1 cofactor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:160,438,708...160,463,261
Ensembl chr 3:160,438,708...160,463,228 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO
IEA 		(PMID:23455425)
GO_REF:0000107 		RGD
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chr 6:137,918,040...137,977,767
Ensembl chr 6:137,918,051...137,977,767 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in
acts_upstream_of_or_within 		IMP
IEA
ISO
IBA 		GO_REF:0000117
GO_REF:0000107
(PMID:24098492)
GO_REF:0000033
(PMID:33637724) 		UniProt
Ensembl
RGD
GO_Central		 PMID:24098492 PMID:33637724 PMID:12453151 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117, RGD:2303129 NCBI chr18:22,119,677...22,203,546
Ensembl chr18:22,119,792...22,203,539 		JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 2:55,967,766...56,003,450
Ensembl chr 2:55,967,351...56,003,450 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO
IEA 		MGI:2149116 (PMID:15452145)
GO_REF:0000107 		RGD
Ensembl		 PMID:15452145 GO_REF:0000107 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:109,060,352...109,106,189 		JBrowse link
G Rab19 RAB19, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:69,123,962...69,133,691
Ensembl chr 4:69,123,924...69,134,383 		JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO
IBA
ISS 		(PMID:22939626)
GO_REF:0000033
GO_REF:0000024 		RGD
GO_Central
UniProt		 PMID:22939626 GO_REF:0000024 GO_REF:0000033 NCBI chr14:98,623,582...98,648,766
Ensembl chr14:98,623,635...98,661,582 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:211,835,133...211,843,408
Ensembl chr 1:211,835,073...211,843,337
Ensembl chr  X:211,835,073...211,843,337 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO
IEA
IBA 		(PMID:22452336)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:22452336 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:43,440,047...43,463,327
Ensembl chr 9:43,440,273...43,463,325 		JBrowse link
G Rab33a RAB33A, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:132,572,133...132,584,255
Ensembl chr  X:132,572,148...132,584,254 		JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in
acts_upstream_of_or_within 		ISO
IBA
IEA 		(PMID:18448665)
(PMID:23202584), (PMID:30778222)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:18448665 PMID:23202584 PMID:30778222 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:137,678,953...137,689,581
Ensembl chr 2:137,678,978...137,689,581 		JBrowse link
G Rab43 RAB43, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:121,806,992...121,826,694
Ensembl chr 4:121,806,992...121,854,561 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO
IEA 		(PMID:19956673)
GO_REF:0000107 		RGD
Ensembl		 PMID:19956673 GO_REF:0000107 NCBI chr 4:122,019,281...122,068,067
Ensembl chr 4:121,983,938...122,064,185 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:19225151), (PMID:28890335)
(PMID:23202584), (PMID:30778222)
GO_REF:0000117
GO_REF:0000107
GO_REF:0000002
(PMID:19225151), (PMID:19258318)
GO_REF:0000033
(PMID:23392225) 		RGD
UniProt
Ensembl
InterPro
GO_Central		 PMID:19225151 PMID:19258318 PMID:23202584 PMID:23392225 PMID:28890335 More... GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 5:17,948,522...18,012,434
Ensembl chr 5:17,948,522...18,012,434 		JBrowse link
G Rbx1 ring-box 1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 7:114,870,893...114,881,194
Ensembl chr 7:114,870,972...114,881,191 		JBrowse link
G RGD1309362 similar to interferon-inducible GTPase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:55,943,741...55,969,375
Ensembl chr18:55,943,264...55,994,435 		JBrowse link
G RGD1559575 similar to novel protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:33,752,208...33,777,536
Ensembl chr10:33,753,267...33,776,789 		JBrowse link
G Rheb Ras homolog, mTORC1 binding acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 4:11,012,173...11,053,860
Ensembl chr 4:11,012,643...11,053,931 		JBrowse link
G Rps6kb1 ribosomal protein S6 kinase B1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr10:71,817,794...71,865,211
Ensembl chr10:71,815,614...71,865,238 		JBrowse link
G Rptor regulatory associated protein of MTOR, complex 1 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr10:105,376,943...105,675,416
Ensembl chr10:105,376,943...105,675,413 		JBrowse link
G Rraga Ras-related GTP binding A acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 5:106,159,335...106,160,930
Ensembl chr 5:106,158,853...106,160,504 		JBrowse link
G Rragc Ras-related GTP binding C acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 5:141,433,014...141,452,546
Ensembl chr 5:141,433,040...141,452,548 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in ISO
IEA
IBA 		(PMID:26416964)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:26416964 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:83,152,139...83,172,683
Ensembl chr 9:83,154,445...83,172,897 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 8:119,390,207...119,475,863
Ensembl chr 8:119,390,207...119,475,863 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in
acts_upstream_of_or_within 		ISS
ISO
IEA
IBA 		GO_REF:0000024
(PMID:23202584)
GO_REF:0000107
(PMID:30568238)
GO_REF:0000033
(PMID:30568238), (PMID:30842662), (PMID:37535724) 		UniProt
RGD
Ensembl
GO_Central		 PMID:23202584 PMID:30568238 PMID:30842662 PMID:37535724 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr18:27,606,196...27,612,544
Ensembl chr18:27,606,196...27,611,947 		JBrowse link
G Stx12 syntaxin 12 involved_in ISO
IBA 		(PMID:24095276)
GO_REF:0000033 		RGD
GO_Central		 PMID:24095276 GO_REF:0000033 NCBI chr 5:150,347,554...150,376,426
Ensembl chr 5:150,334,836...150,376,346 		JBrowse link
G Syk spleen associated tyrosine kinase acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr17:12,756,493...12,830,927
Ensembl chr17:12,756,493...12,813,278 		JBrowse link
G Synpo2 synaptopodin 2 involved_in IMP PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chr 2:213,901,685...214,055,844
Ensembl chr 2:213,900,868...214,055,844 		JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO
IEA 		(PMID:23908015)
GO_REF:0000107 		RGD
Ensembl		 PMID:23908015 GO_REF:0000107 NCBI chr 1:210,556,270...210,568,021
Ensembl chr 1:210,556,270...210,568,033 		JBrowse link
G Tmem41b transmembrane protein 41B involved_in ISS
IEA
IBA
ISO 		GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
(PMID:30093494), (PMID:30126924), (PMID:30933966) 		UniProt
Ensembl
GO_Central
RGD		 PMID:30093494 PMID:30126924 PMID:30933966 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:173,447,362...173,461,760
Ensembl chr 1:173,447,367...173,461,597 		JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:29,051,267...29,069,486
Ensembl chr 5:29,051,264...29,069,484 		JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in ISO
IBA
IEA
ISS 		(PMID:19056683)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024 		RGD
GO_Central
Ensembl
UniProt		 PMID:19056683 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:164,341,618...164,350,270
Ensembl chr 3:164,343,205...164,350,225 		JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in
acts_upstream_of_or_within 		ISO (PMID:23524951)
(PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:28890335), (PMID:30778222), (PMID:33637724) 		RGD PMID:20713597 PMID:23202584 PMID:23392225 PMID:23524951 PMID:25891078 More... NCBI chr 3:108,418,537...108,443,330
Ensembl chr 3:108,418,513...108,443,328 		JBrowse link
G Trim21 tripartite motif-containing 21 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr 1:166,376,829...166,399,441
Ensembl chr 1:166,376,829...166,399,449 		JBrowse link
G Trim32 tripartite motif-containing 32 involved_in
acts_upstream_of_or_within 		ISO (PMID:37943659)
(PMID:22170151), (PMID:37943659) 		RGD PMID:22170151 PMID:37943659 NCBI chr 5:84,020,604...84,031,483
Ensembl chr 5:84,014,803...84,042,748 		JBrowse link
G Ube3c ubiquitin protein ligase E3C acts_upstream_of_or_within ISO (PMID:33637724) RGD PMID:33637724 NCBI chr 4:6,323,831...6,425,085
Ensembl chr 4:6,323,831...6,424,845 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO
IBA
IEA 		(PMID:20529957)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:20529957 GO_REF:0000033 GO_REF:0000107 NCBI chr17:6,438,456...6,482,498
Ensembl chr17:6,444,124...6,482,499 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:21,228,809...21,232,228
Ensembl chr  X:21,229,197...21,232,268 		JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:33,603,804...33,645,958
Ensembl chr 6:33,603,804...33,632,202
Ensembl chr20:33,603,804...33,632,202 		JBrowse link
G Ubxn2b UBX domain protein 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:24,101,187...24,129,205
Ensembl chr 5:24,101,209...24,129,199 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:19225151), (PMID:28890335)
(PMID:20713597), (PMID:23202584), (PMID:23392225), (PMID:23524951), (PMID:25891078), (PMID:30778222), (PMID:33637724)
GO_REF:0000107
GO_REF:0000033
(PMID:19225151), (PMID:19258318) 		RGD
Ensembl
GO_Central		 PMID:19225151 PMID:19258318 PMID:20713597 PMID:23202584 PMID:23392225 More... GO_REF:0000033 GO_REF:0000107 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:51,511,492...51,537,746 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:46,951,038...47,029,844
Ensembl chr10:46,951,038...47,029,844 		JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:66,888,820...66,895,380
Ensembl chr 8:66,888,788...66,895,379 		JBrowse link
G Usp7 ubiquitin specific peptidase 7 acts_upstream_of_or_within ISO (PMID:28890335) RGD PMID:28890335 NCBI chr10:7,335,508...7,432,018
Ensembl chr10:7,367,604...7,432,013 		JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO
IBA
IEA
ISS 		(PMID:28890335), (PMID:30093494), (PMID:30933966)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024 		RGD
GO_Central
Ensembl
UniProt		 PMID:28890335 PMID:30093494 PMID:30933966 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:71,903,223...72,002,337
Ensembl chr10:71,903,227...72,002,319 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
IEA
ISS 		(PMID:28561066)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:28561066 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:17,448,207...17,454,117 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in ISO
IEA 		(PMID:28561066)
GO_REF:0000107 		RGD
Ensembl		 PMID:28561066 GO_REF:0000107 NCBI chr10:107,097,655...107,127,839
Ensembl chr10:107,097,755...107,127,831 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO
IEA 		(PMID:28561066)
GO_REF:0000107 		RGD
Ensembl		 PMID:28561066 GO_REF:0000107 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:95,042,441...95,079,293 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:20505359), (PMID:28561066), (PMID:28890335) 		UniProt
Ensembl
RGD		 PMID:20505359 PMID:28561066 PMID:28890335 GO_REF:0000024 GO_REF:0000107 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:17,024,878...17,071,406 		JBrowse link
G Zranb1 zinc finger RANBP2-type containing 1 acts_upstream_of_or_within ISO (PMID:33637724) RGD PMID:33637724 NCBI chr 1:197,155,048...197,211,518
Ensembl chr 1:197,155,459...197,209,384 		JBrowse link
autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg2b AFG2 AAA ATPase homolog B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:130,148,061...130,162,458
Ensembl chr 3:130,148,301...130,162,112 		JBrowse link
G Atg12 autophagy related 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:41,638,841...41,649,311
Ensembl chr18:41,635,835...41,649,261 		JBrowse link
G Atg14 autophagy related 14 involved_in ISO
IEA 		(PMID:10625637)
GO_REF:0000107 		RGD
Ensembl		 PMID:10625637 GO_REF:0000107 NCBI chr15:23,275,457...23,306,817
Ensembl chr15:23,275,457...23,306,815 		JBrowse link
G Becn1 beclin 1 involved_in ISO
IEA 		(PMID:10625637)
GO_REF:0000107 		RGD
Ensembl		 PMID:10625637 GO_REF:0000107 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,731,650...86,747,002 		JBrowse link
G Chmp1a charged multivesicular body protein 1A involved_in ISO
IEA 		(PMID:17984323)
GO_REF:0000107 		RGD
Ensembl		 PMID:17984323 GO_REF:0000107 NCBI chr19:68,146,672...68,154,952
Ensembl chr19:68,146,672...68,154,952 		JBrowse link
G Chmp1b charged multivesicular body protein 1B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr18:63,010,270...63,012,800
Ensembl chr18:63,010,251...63,011,415 		JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 1:82,731,212...82,735,088
Ensembl chr 1:82,732,231...82,738,613 		JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in ISO
IEA 		(PMID:17984323)
GO_REF:0000107 		RGD
Ensembl		 PMID:17984323 GO_REF:0000107 NCBI chr11:16,783,971...16,810,500
Ensembl chr11:16,783,971...16,828,868 		JBrowse link
G Chmp3 charged multivesicular body protein 3 involved_in ISO
IEA 		(PMID:17984323)
GO_REF:0000107 		RGD
Ensembl		 PMID:17984323 GO_REF:0000107 NCBI chr 4:105,134,860...105,180,862
Ensembl chr 4:105,134,755...105,182,262 		JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 3:163,631,054...163,671,569
Ensembl chr 3:163,631,054...163,671,569 		JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 2:93,299,152...93,336,075
Ensembl chr 2:93,299,157...93,360,850 		JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in ISO
IEA 		(PMID:17984323)
GO_REF:0000107 		RGD
Ensembl		 PMID:17984323 GO_REF:0000107 NCBI chr 5:60,877,369...60,894,512
Ensembl chr 5:60,877,341...60,894,511 		JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in ISO
IEA 		(PMID:17984323)
GO_REF:0000107 		RGD
Ensembl		 PMID:17984323 GO_REF:0000107 NCBI chr10:105,690,400...105,696,070
Ensembl chr10:105,690,398...105,696,333 		JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in ISO
IEA 		(PMID:17984323)
GO_REF:0000107 		RGD
Ensembl		 PMID:17984323 GO_REF:0000107 NCBI chr15:51,200,759...51,215,992
Ensembl chr15:51,201,298...51,215,992 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin acts_upstream_of_or_within ISO
IEA 		MGI:2388888 (PMID:16714284)
GO_REF:0000107 		RGD
Ensembl		 PMID:16714284 GO_REF:0000107 NCBI chr 1:190,586,649...190,600,034
Ensembl chr 1:190,586,650...190,597,929 		JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within ISO (PMID:27715390) RGD PMID:27715390 NCBI chr 8:119,158,380...119,173,483
Ensembl chr 8:119,158,396...119,174,244 		JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:5505596 (PMID:23479740) 		GO_Central
Ensembl
RGD		 PMID:23479740 GO_REF:0000033 GO_REF:0000107 NCBI chr18:73,679,106...73,776,694
Ensembl chr18:73,679,116...73,776,677 		JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:55,213,465...55,216,787
Ensembl chr10:55,212,075...55,216,154 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:164,666,332...164,675,474
Ensembl chr 4:164,666,246...164,674,578 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:56,819,826...56,830,662
Ensembl chr19:56,819,791...56,830,660 		JBrowse link
G Gabarapl3 GABA type A receptor associated protein like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:98,126,056...98,127,013 JBrowse link
G Gabarapl4 gamma-aminobutyric acid receptor associated protein like 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:71,949,837...71,950,435 JBrowse link
G Irgm immunity-related GTPase M involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:21757726) 		UniProt
Ensembl
RGD		 PMID:21757726 GO_REF:0000024 GO_REF:0000107 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,732,961...33,743,228 		JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 involved_in ISS
ISO
IBA
IEA 		GO_REF:0000024
(PMID:27628032)
GO_REF:0000033
GO_REF:0000107 		UniProt
RGD
GO_Central
Ensembl		 PMID:27628032 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:122,038,734...122,087,745
Ensembl chr  X:121,922,187...122,087,675 		JBrowse link
G Lix1 limb and CNS expressed 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:66,802,044...66,859,040
Ensembl chr 1:66,802,272...66,860,627 		JBrowse link
G Lix1l limb and CNS expressed 1 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:186,824,864...186,850,761
Ensembl chr 2:186,824,884...186,850,759 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO
IEA
IBA 		(PMID:28223137)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:28223137 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:164,243,204...164,244,850
Ensembl chr 3:164,243,093...164,244,850 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO
IBA 		(PMID:28223137)
GO_REF:0000033 		RGD
GO_Central		 PMID:28223137 GO_REF:0000033 NCBI chr19:66,571,631...66,582,270
Ensembl chr19:66,574,407...66,584,358
Ensembl chr16:66,574,407...66,584,358 		JBrowse link
G Mcoln1 mucolipin TRP cation channel 1 acts_upstream_of_or_within ISO
IEA 		MGI:3794204 (PMID:20600908)
GO_REF:0000107 		RGD
Ensembl		 PMID:20600908 GO_REF:0000107 NCBI chr12:6,357,851...6,372,151
Ensembl chr12:6,357,807...6,372,151 		JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within
involved_in 		ISO
IEA
IBA 		(PMID:29514215)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:29514215 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:125,749,994...125,784,689
Ensembl chr 2:125,749,994...125,785,919 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in ISO
IEA 		(PMID:10625637)
GO_REF:0000107 		RGD
Ensembl		 PMID:10625637 GO_REF:0000107 NCBI chr18:22,119,677...22,203,546
Ensembl chr18:22,119,792...22,203,539 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 involved_in ISO
IEA 		(PMID:10625637)
GO_REF:0000107 		RGD
Ensembl		 PMID:10625637 GO_REF:0000107 NCBI chr 8:115,146,660...115,195,326
Ensembl chr 8:115,146,687...115,195,326 		JBrowse link
G Rubcnl rubicon like autophagy enhancer involved_in ISO
IEA
IBA 		(PMID:28306502), (PMID:30704899)
GO_REF:0000107
(PMID:30704899)
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:28306502 PMID:30704899 GO_REF:0000033 GO_REF:0000107 NCBI chr15:56,741,897...56,807,086
Ensembl chr15:56,741,869...56,779,649 		JBrowse link
G Snap29 synaptosome associated protein 29 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:23217709) 		UniProt
Ensembl
RGD		 PMID:23217709 GO_REF:0000024 GO_REF:0000107 NCBI chr11:97,082,721...97,113,195
Ensembl chr11:97,082,739...97,113,195 		JBrowse link
G Snapin SNAP-associated protein acts_upstream_of_or_within ISO MGI:3608768 (PMID:20920792), (PMID:22797916) RGD PMID:20920792 PMID:22797916 NCBI chr 2:178,269,157...178,271,746
Ensembl chr 2:178,269,166...178,272,041 		JBrowse link
G Snx14 sorting nexin 14 involved_in ISO
IEA
IBA 		(PMID:25848753)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:25848753 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:98,053,769...98,278,287
Ensembl chr 8:98,186,714...98,270,451 		JBrowse link
G Stx17 syntaxin 17 involved_in ISO
IEA
ISS 		(PMID:23217709), (PMID:24554770), (PMID:28306502)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:23217709 PMID:24554770 PMID:28306502 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:67,241,673...67,302,228
Ensembl chr 5:67,241,727...67,302,218 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISS
IEA
IBA
ISO 		GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
(PMID:22342342) 		UniProt
Ensembl
GO_Central
RGD		 PMID:22342342 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr12:15,504,456...15,534,541
Ensembl chr12:15,505,343...15,534,116 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:23459205) 		Ensembl
RGD		 PMID:23459205 GO_REF:0000107 NCBI chr17:6,438,456...6,482,498
Ensembl chr17:6,444,124...6,482,499 		JBrowse link
G Uvrag UV radiation resistance associated involved_in ISO
IEA 		(PMID:28306502)
GO_REF:0000107 		RGD
Ensembl		 PMID:28306502 GO_REF:0000107 NCBI chr 1:162,596,514...162,854,348
Ensembl chr 1:162,596,515...162,854,348 		JBrowse link
G Vamp7 vesicle-associated membrane protein 7 NOT|involved_in ISO (PMID:23217709) RGD PMID:23217709 NCBI chr12:21,842,206...21,958,556
Ensembl chr12:21,842,228...21,958,552 		JBrowse link
G Vamp8 vesicle-associated membrane protein 8 involved_in ISO
IEA
ISS 		(PMID:23217709)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:23217709 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:106,000,570...106,011,081
Ensembl chr 4:106,000,570...106,011,073 		JBrowse link
G Vcp valosin-containing protein involved_in ISO
IEA
IBA
ISS 		(PMID:20104022)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024 		RGD
Ensembl
GO_Central
UniProt		 PMID:20104022 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:62,005,984...62,025,387
Ensembl chr 5:62,005,985...62,025,387 		JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog NOT|involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 6:112,619,228...112,644,089
Ensembl chr 6:112,619,228...112,641,331 		JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes involved_in ISO
IEA 		(PMID:25783203)
GO_REF:0000107 		RGD
Ensembl		 PMID:25783203 GO_REF:0000107 NCBI chr 3:138,075,649...138,097,154
Ensembl chr 3:138,075,660...138,110,632 		JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in ISO
IEA 		(PMID:24554770), (PMID:25783203)
GO_REF:0000107 		RGD
Ensembl		 PMID:24554770 PMID:25783203 GO_REF:0000107 NCBI chr12:38,685,484...38,710,668
Ensembl chr12:38,685,538...38,712,277 		JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated NOT|involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 1:143,633,167...143,656,228
Ensembl chr 1:143,633,197...143,659,552 		JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B NOT|involved_in ISO (PMID:23217709) RGD PMID:23217709 NCBI chr 6:103,694,342...103,709,544
Ensembl chr 6:103,694,345...103,709,295 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 NOT|involved_in ISO (PMID:20505359) RGD PMID:20505359 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:17,024,878...17,071,406 		JBrowse link
autophagosome membrane docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 involved_in ISO
IEA
IBA 		(PMID:25686604)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:25686604 GO_REF:0000033 GO_REF:0000107 NCBI chr15:23,275,457...23,306,817
Ensembl chr15:23,275,457...23,306,815 		JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISO
ISS 		(PMID:28890335)
GO_REF:0000024 		RGD
UniProt		 PMID:28890335 GO_REF:0000024 NCBI chr12:39,733,519...39,782,942
Ensembl chr12:39,733,458...39,782,934 		JBrowse link
G Calm1 calmodulin 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:28890335) 		UniProt
Ensembl
RGD		 PMID:28890335 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:125,217,191...125,227,855
Ensembl chr 6:125,217,246...125,225,381 		JBrowse link
G Calm2 calmodulin 2 involved_in ISS
ISO 		GO_REF:0000024
(PMID:28890335) 		UniProt
RGD		 PMID:28890335 GO_REF:0000024 NCBI chr 6:12,845,170...12,857,830
Ensembl chr15:64,519,554...64,520,657
Ensembl chr 6:64,519,554...64,520,657 		JBrowse link
G Calm3 calmodulin 3 involved_in ISS
ISO 		GO_REF:0000024
(PMID:28890335) 		UniProt
RGD		 PMID:28890335 GO_REF:0000024 NCBI chr 1:86,718,761...86,725,869
Ensembl chr 1:86,717,321...86,725,960 		JBrowse link
G Snap29 synaptosome associated protein 29 involved_in ISO
IEA 		(PMID:25686604)
GO_REF:0000107 		RGD
Ensembl		 PMID:25686604 GO_REF:0000107 NCBI chr11:97,082,721...97,113,195
Ensembl chr11:97,082,739...97,113,195 		JBrowse link
G Stx17 syntaxin 17 involved_in ISO
IEA 		(PMID:25686604)
GO_REF:0000107 		RGD
Ensembl		 PMID:25686604 GO_REF:0000107 NCBI chr 5:67,241,673...67,302,228
Ensembl chr 5:67,241,727...67,302,218 		JBrowse link
G Vamp8 vesicle-associated membrane protein 8 involved_in ISO
IEA 		(PMID:25686604)
GO_REF:0000107 		RGD
Ensembl		 PMID:25686604 GO_REF:0000107 NCBI chr 4:106,000,570...106,011,081
Ensembl chr 4:106,000,570...106,011,073 		JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:28890335) 		UniProt
Ensembl
RGD		 PMID:28890335 GO_REF:0000024 GO_REF:0000107 NCBI chr10:71,903,223...72,002,337
Ensembl chr10:71,903,227...72,002,319 		JBrowse link
autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO
IEA 		(PMID:22186024)
GO_REF:0000107 		RGD
Ensembl		 PMID:22186024 GO_REF:0000107 NCBI chr 5:158,575,727...158,595,157
Ensembl chr 5:158,575,749...158,595,156 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO
IEA 		(PMID:23707074)
GO_REF:0000107 		RGD
Ensembl		 PMID:23707074 GO_REF:0000107 NCBI chr 2:176,902,141...176,916,015
Ensembl chr 2:176,907,154...176,916,985 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha acts_upstream_of_or_within ISO MGI:2685045 (PMID:24098492) RGD PMID:24098492 NCBI chr 1:180,012,248...180,117,786
Ensembl chr 1:180,012,248...180,117,773 		JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta acts_upstream_of_or_within ISO
IEA 		MGI:1203729 (PMID:24098492)
GO_REF:0000107 		RGD
Ensembl		 PMID:24098492 GO_REF:0000107 NCBI chr13:47,046,866...47,107,733
Ensembl chr13:47,047,127...47,107,725 		JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO
IEA 		(PMID:25365221)
GO_REF:0000107 		RGD
Ensembl		 PMID:25365221 GO_REF:0000107 NCBI chr 3:129,453,118...129,526,469
Ensembl chr 3:129,461,477...129,526,742 		JBrowse link
G Zfyve26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within ISO
IEA 		(PMID:25365221)
GO_REF:0000107 		RGD
Ensembl		 PMID:25365221 GO_REF:0000107 NCBI chr 6:103,764,864...103,828,520
Ensembl chr 6:103,765,510...103,828,463 		JBrowse link
autophagosome-endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rubcnl rubicon like autophagy enhancer involved_in ISO
IEA
IBA 		(PMID:28306502)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:28306502 GO_REF:0000033 GO_REF:0000107 NCBI chr15:56,741,897...56,807,086
Ensembl chr15:56,741,869...56,779,649 		JBrowse link
autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ARF like GTPase 8B involved_in ISO
IEA
ISS 		(PMID:28325809)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:28325809 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:143,304,597...143,348,580
Ensembl chr 4:143,304,621...143,349,068 		JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO
IEA
IBA 		(PMID:30538141)
GO_REF:0000117
GO_REF:0000107
GO_REF:0000033 		RGD
UniProt
Ensembl
GO_Central		 PMID:30538141 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 5:158,575,727...158,595,157
Ensembl chr 5:158,575,749...158,595,156 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO
IEA 		(PMID:26450516)
GO_REF:0000107 		RGD
Ensembl		 PMID:26450516 GO_REF:0000107 NCBI chr 1:190,586,649...190,600,034
Ensembl chr 1:190,586,650...190,597,929 		JBrowse link
G Diaph3 diaphanous-related formin 3 acts_upstream_of_or_within ISO
IEA 		(PMID:33036023)
GO_REF:0000107 		RGD
Ensembl		 PMID:33036023 GO_REF:0000107 NCBI chr15:68,951,992...69,421,623
Ensembl chr15:68,951,989...69,421,552 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of ISO (PMID:25915474) RGD PMID:25915474 NCBI chr 3:37,257,025...37,338,675
Ensembl chr 3:37,259,855...37,338,557 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000117
(PMID:29727621)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:29727621 GO_REF:0000024 GO_REF:0000107 GO_REF:0000117 NCBI chr17:86,405,080...86,576,597
Ensembl chr17:86,405,081...86,576,430 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000117
(PMID:29727621)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:29727621 GO_REF:0000024 GO_REF:0000107 GO_REF:0000117 NCBI chr10:83,202,379...83,231,292
Ensembl chr10:83,197,287...83,231,292 		JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 7:64,905,322...64,920,380
Ensembl chr 7:64,905,328...64,920,373 		JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 involved_in ISO
ISS 		(PMID:28325809)
GO_REF:0000024 		RGD
UniProt		 PMID:28325809 GO_REF:0000024 NCBI chr10:88,814,699...88,876,570
Ensembl chr10:88,814,699...88,862,544 		JBrowse link
G Rab2a RAB2A, member RAS oncogene family involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:37821429) 		UniProt
Ensembl
RGD		 PMID:37821429 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:26,473,424...26,537,441
Ensembl chr 5:26,473,548...26,538,488 		JBrowse link
G Rab39a RAB39A, member RAS oncogene family involved_in ISO
IEA 		(PMID:37821429)
GO_REF:0000107 		RGD
Ensembl		 PMID:37821429 GO_REF:0000107 NCBI chr 8:62,984,434...63,002,053
Ensembl chr 8:62,984,434...63,002,053 		JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:37821429) 		UniProt
Ensembl
RGD		 PMID:37821429 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:54,562,570...54,587,649
Ensembl chr 5:54,562,570...54,587,637 		JBrowse link
G Rubcnl rubicon like autophagy enhancer involved_in ISO
IEA
IBA 		(PMID:28306502)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:28306502 GO_REF:0000033 GO_REF:0000107 NCBI chr15:56,741,897...56,807,086
Ensembl chr15:56,741,869...56,779,649 		JBrowse link
G Stx17 syntaxin 17 involved_in
acts_upstream_of_positive_effect 		ISS
ISO
IEA 		GO_REF:0000024
(PMID:23217709)
GO_REF:0000107
(PMID:37821429) 		UniProt
RGD
Ensembl		 PMID:23217709 PMID:37821429 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:67,241,673...67,302,228
Ensembl chr 5:67,241,727...67,302,218 		JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO
IEA 		(PMID:23023224)
GO_REF:0000107 		RGD
Ensembl		 PMID:23023224 GO_REF:0000107 NCBI chr19:13,411,227...13,446,129
Ensembl chr19:13,411,157...13,446,110 		JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in ISO
IEA 		(PMID:33422265)
GO_REF:0000107 		RGD
Ensembl		 PMID:33422265 GO_REF:0000107 NCBI chr 3:127,721,076...127,758,658
Ensembl chr 3:127,721,076...127,758,768 		JBrowse link
autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001519.1 involved_in IEA GO_REF:0000043
GO_REF:0000104 		UniProt GO_REF:0000043 GO_REF:0000104
G AABR07025818.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G AABR07035218.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G AABR07040864.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:35,377,587...35,480,843
Ensembl chr 3:35,377,391...35,480,846 		JBrowse link
G Acbd5 acyl-CoA binding domain containing 5 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:90,114,250...90,156,286
Ensembl chr17:90,114,375...90,156,286 		JBrowse link
G Acbd5l1 acyl-CoA binding domain containing 5 like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:6,232,968...6,236,199
Ensembl chr 5:6,233,845...6,236,265 		JBrowse link
G Acvr2a activin A receptor type 2A IMP RGD PMID:27769861 RGD:329853763 NCBI chr 3:53,614,143...53,701,933
Ensembl chr 3:53,614,171...53,701,941 		JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:3715977 (PMID:17589504)
GO_REF:0000043
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:17589504 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 NCBI chr 3:98,156,626...98,345,876
Ensembl chr 3:98,156,652...98,345,872 		JBrowse link
G Anxa7 annexin A7 involved_in ISO
IEA 		(PMID:24007983)
GO_REF:0000107 		RGD
Ensembl		 PMID:24007983 GO_REF:0000107 NCBI chr15:3,869,180...3,897,827
Ensembl chr15:3,870,974...3,898,891 		JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within ISO MGI:4460281 (PMID:30930081) RGD PMID:30930081 NCBI chr12:17,207,315...17,222,975
Ensembl chr12:17,207,315...17,222,467 		JBrowse link
G Arfip2 ARF interacting protein 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:169,387,484...169,392,290
Ensembl chr 1:169,387,485...169,392,166 		JBrowse link
G Arsa arylsulfatase A IDA RGD PMID:8037 RGD:1599235 NCBI chr 7:122,422,971...122,426,971
Ensembl chr 7:122,422,982...122,428,401 		JBrowse link
G Arsb arylsulfatase B IDA RGD PMID:8037 RGD:1599235 NCBI chr 2:26,736,395...26,895,682
Ensembl chr 2:26,736,957...26,897,611 		JBrowse link
G Atg10 autophagy related 10 involved_in ISO
IEA 		(PMID:15657430), (PMID:17256008)
GO_REF:0000043 		RGD
UniProt		 PMID:15657430 PMID:17256008 GO_REF:0000043 NCBI chr 2:23,843,695...24,133,459
Ensembl chr 2:23,844,482...24,133,368 		JBrowse link
G Atg101 autophagy related 101 involved_in IEA GO_REF:0000043
GO_REF:0000002 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 7:134,277,223...134,286,387
Ensembl chr 7:134,272,847...134,286,379 		JBrowse link
G Atg12 autophagy related 12 involved_in IMP
IEA 		GO_REF:0000043
GO_REF:0000117 		UniProt
RGD		 PMID:18059433 GO_REF:0000043 GO_REF:0000117, RGD:2301217 NCBI chr18:41,638,841...41,649,311
Ensembl chr18:41,635,835...41,649,261 		JBrowse link
G Atg13 autophagy related 13 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:98,102,831...98,136,741
Ensembl chr 3:98,101,552...98,136,743 		JBrowse link
G Atg14 autophagy related 14 involved_in ISO
IEA 		(PMID:19270693), (PMID:19270696)
GO_REF:0000043
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:19270693 PMID:19270696 GO_REF:0000043 GO_REF:0000107 NCBI chr15:23,275,457...23,306,817
Ensembl chr15:23,275,457...23,306,815 		JBrowse link
G Atg16l1 autophagy related 16-like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:95,869,839...95,905,354
Ensembl chr 9:95,869,865...95,905,357 		JBrowse link
G Atg16l2 autophagy related 16-like 2 NOT|involved_in ISO (PMID:22082872) RGD PMID:22082872 NCBI chr 1:165,100,946...165,123,307
Ensembl chr 1:165,102,936...165,115,473 		JBrowse link
G Atg2a autophagy related 2A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:212,971,822...212,991,505
Ensembl chr 1:212,971,844...212,991,528 		JBrowse link
G Atg2b autophagy related 2B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:130,286,979...130,357,109
Ensembl chr 6:130,286,986...130,357,109 		JBrowse link
G Atg3 autophagy related 3 involved_in IEP
IEA
ISO
ISS 		GO_REF:0000043
GO_REF:0000107
(PMID:18768753)
GO_REF:0000117
GO_REF:0000024 		UniProt
Ensembl
RGD		 PMID:18768753 PMID:17110912 GO_REF:0000024 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117, RGD:1643237 NCBI chr11:69,130,948...69,159,280
Ensembl chr11:69,121,952...69,159,280 		JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in ISO
IEA 		(PMID:30661429)
GO_REF:0000107
GO_REF:0000043 		RGD
Ensembl
UniProt		 PMID:30661429 GO_REF:0000043 GO_REF:0000107 NCBI chr  X:109,453,712...109,553,758
Ensembl chr  X:109,453,689...109,553,760 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IEA 		(PMID:18387192), (PMID:26378241), (PMID:27527864), (PMID:28821708)
GO_REF:0000107
(PMID:20577052)
GO_REF:0000043 		RGD
Ensembl
UniProt		 PMID:18387192 PMID:20577052 PMID:26378241 PMID:27527864 PMID:28821708 GO_REF:0000043 GO_REF:0000107 NCBI chr 9:101,729,772...101,761,456
Ensembl chr 9:101,726,782...101,761,622 		JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in ISO
IEA 		(PMID:30661429)
GO_REF:0000107
GO_REF:0000043 		RGD
Ensembl
UniProt		 PMID:30661429 GO_REF:0000043 GO_REF:0000107 NCBI chr 5:118,977,594...119,050,894
Ensembl chr 5:118,982,918...119,052,695 		JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO
IEA 		(PMID:30661429)
GO_REF:0000107
GO_REF:0000043 		RGD
Ensembl
UniProt		 PMID:30661429 GO_REF:0000043 GO_REF:0000107 NCBI chr 8:28,083,902...28,093,491
Ensembl chr 8:28,083,936...28,093,491 		JBrowse link
G Atg5 autophagy related 5 involved_in IMP
IEA
ISO
ISS 		GO_REF:0000107
GO_REF:0000043
GO_REF:0000002
(PMID:11266458), (PMID:23878245)
UniProtKB:O95352 (PMID:26812546), (PMID:28389568)
GO_REF:0000024 		Ensembl
UniProt
InterPro
RGD		 PMID:11266458 PMID:23878245 PMID:26812546 PMID:28389568 PMID:18059433 GO_REF:0000002 GO_REF:0000024 GO_REF:0000043 GO_REF:0000107, RGD:2301217 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:49,380,813...49,471,821 		JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000117
GO_REF:0000107
(PMID:20080761), (PMID:29937374)
GO_REF:0000043
MGI:2137515|MGI:2176052|MGI:2176073|MGI:3587769|MGI:3587771 (PMID:15866887), (PMID:16885219), (PMID:17450150), (PMID:17726112), (PMID:20577052)
UniProtKB:Q9H1Y0 (PMID:20543840), (PMID:24681637), (PMID:28389568)
(PMID:25327288) 		UniProt
Ensembl
RGD		 PMID:15866887 PMID:16885219 PMID:17450150 PMID:17726112 PMID:20080761 More... GO_REF:0000024 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:149,391,390...149,598,319 		JBrowse link
G Atg9a autophagy related 9A acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:4417824 (PMID:19926846)
GO_REF:0000002
GO_REF:0000043
(PMID:27587839) 		RGD
InterPro
UniProt		 PMID:19926846 PMID:27587839 GO_REF:0000002 GO_REF:0000043 NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:84,126,071...84,136,666 		JBrowse link
G Atg9b autophagy related 9B involved_in IEA GO_REF:0000002
GO_REF:0000043 		InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr 4:11,678,548...11,686,097
Ensembl chr 4:11,678,299...11,686,079 		JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO
IEA 		(PMID:27278822)
GO_REF:0000107 		RGD
Ensembl		 PMID:27278822 GO_REF:0000107 NCBI chr 5:158,575,727...158,595,157
Ensembl chr 5:158,575,749...158,595,156 		JBrowse link
G Bcas3 BCAS3, microtubule associated cell migration factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:70,711,084...71,170,492
Ensembl chr10:70,711,525...71,170,803 		JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000043
(PMID:25891078) 		UniProt
RGD		 PMID:25891078 GO_REF:0000043 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:23,204,464...23,366,900 		JBrowse link
G Becn1 beclin 1 acts_upstream_of_or_within
involved_in 		IMP
ISO
IEA
ISS 		(PMID:12372286), (PMID:17589504), (PMID:28872463)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000043
(PMID:23364696), (PMID:23629966), (PMID:25891078)
GO_REF:0000117
(PMID:23184933), (PMID:23629966), (PMID:24056303), (PMID:25891078)
(PMID:28747345)
GO_REF:0000024 		RGD
Ensembl
InterPro
UniProt		 PMID:12372286 PMID:17589504 PMID:23184933 PMID:23364696 PMID:23629966 More... GO_REF:0000002 GO_REF:0000024 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117, RGD:1643194, RGD:11558011 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,731,650...86,747,002 		JBrowse link
G Becn2 beclin 2 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:23954414)
GO_REF:0000107
GO_REF:0000117
GO_REF:0000043
GO_REF:0000002
MGI:5550535 (PMID:23954414) 		RGD
Ensembl
UniProt
InterPro		 PMID:23954414 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 NCBI chr13:90,375,186...90,424,533
Ensembl chr13:90,375,186...90,378,488 		JBrowse link
G Bmal1 basic helix-loop-helix ARNT like 1 acts_upstream_of_or_within ISO MGI:2180361 (PMID:26945058) RGD PMID:26945058 NCBI chr 1:176,766,222...176,864,741
Ensembl chr 1:176,829,305...176,864,739 		JBrowse link
G C1h19orf12 similar to human chromosome 19 open reading frame 12 involved_in ISO
IEA 		(PMID:26136767)
GO_REF:0000107 		RGD
Ensembl		 PMID:26136767 GO_REF:0000107 NCBI chr 1:100,010,280...100,023,907
Ensembl chr 1:100,010,323...100,023,903 		JBrowse link
G C20h6orf89 similar to human chromosome 6 open reading frame 89 acts_upstream_of_or_within ISO
IEA 		(PMID:35820707)
GO_REF:0000107 		RGD
Ensembl		 PMID:35820707 GO_REF:0000107 NCBI chr20:7,324,105...7,368,482
Ensembl chr20:7,324,129...7,363,666 		JBrowse link
G Chmp1a charged multivesicular body protein 1A involved_in ISO
IEA 		(PMID:17984323)
GO_REF:0000107 		RGD
Ensembl		 PMID:17984323 GO_REF:0000107 NCBI chr19:68,146,672...68,154,952
Ensembl chr19:68,146,672...68,154,952 		JBrowse link
G Chmp1b charged multivesicular body protein 1B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr18:63,010,270...63,012,800
Ensembl chr18:63,010,251...63,011,415 		JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 1:82,731,212...82,735,088
Ensembl chr 1:82,732,231...82,738,613 		JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in ISO
IEA 		(PMID:17984323)
GO_REF:0000107 		RGD
Ensembl		 PMID:17984323 GO_REF:0000107 NCBI chr11:16,783,971...16,810,500
Ensembl chr11:16,783,971...16,828,868 		JBrowse link
G Chmp3 charged multivesicular body protein 3 involved_in ISO
IEA 		(PMID:17984323)
GO_REF:0000107 		RGD
Ensembl		 PMID:17984323 GO_REF:0000107 NCBI chr 4:105,134,860...105,180,862
Ensembl chr 4:105,134,755...105,182,262 		JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:17984323), (PMID:24095276) RGD PMID:17984323 PMID:24095276 NCBI chr 3:163,631,054...163,671,569
Ensembl chr 3:163,631,054...163,671,569 		JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 2:93,299,152...93,336,075
Ensembl chr 2:93,299,157...93,360,850 		JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in ISO
IEA 		(PMID:17984323)
GO_REF:0000107 		RGD
Ensembl		 PMID:17984323 GO_REF:0000107 NCBI chr 5:60,877,369...60,894,512
Ensembl chr 5:60,877,341...60,894,511 		JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in ISO
IEA 		(PMID:17984323)
GO_REF:0000107 		RGD
Ensembl		 PMID:17984323 GO_REF:0000107 NCBI chr10:105,690,400...105,696,070
Ensembl chr10:105,690,398...105,696,333 		JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in ISO
IEA 		(PMID:17984323)
GO_REF:0000107 		RGD
Ensembl		 PMID:17984323 GO_REF:0000107 NCBI chr15:51,200,759...51,215,992
Ensembl chr15:51,201,298...51,215,992 		JBrowse link
G Chuk component of inhibitor of nuclear factor kappa B kinase complex acts_upstream_of_or_within ISO (PMID:25891078) RGD PMID:25891078 NCBI chr 1:252,908,748...252,944,273
Ensembl chr 1:252,908,749...252,944,273 		JBrowse link
G Cisd2 CDGSH iron sulfur domain 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:226,502,517...226,527,325
Ensembl chr 2:226,502,517...226,540,080 		JBrowse link
G Clec16a C-type lectin domain containing 16A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:5,434,725...5,631,246
Ensembl chr10:5,434,725...5,630,619 		JBrowse link
G Cltc clathrin heavy chain involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:72,014,984...72,073,308
Ensembl chr10:72,014,986...72,070,691 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO
IEA 		MGI:2153356 (PMID:21037586), (PMID:22024752), (PMID:26565691)
GO_REF:0000107 		RGD
Ensembl		 PMID:21037586 PMID:22024752 PMID:26565691 GO_REF:0000107 NCBI chr20:11,905,690...11,924,111
Ensembl chr20:11,905,457...11,924,107 		JBrowse link
G Creg1 cellular repressor of E1A-stimulated genes 1 acts_upstream_of_or_within ISO MGI:7384603 (PMID:33966596) RGD PMID:33966596 NCBI chr13:80,552,779...80,565,272
Ensembl chr13:80,549,933...80,565,272 		JBrowse link
G Ctsb cathepsin B IEP RGD PMID:18567942 RGD:2315511 NCBI chr15:41,565,607...41,586,479
Ensembl chr15:41,565,611...41,586,478 		JBrowse link
G Dap death-associated protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:83,910,113...83,962,673
Ensembl chr 2:83,910,060...83,962,673 		JBrowse link
G Dnajc16 DnaJ heat shock protein family (Hsp40) member C16 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:159,355,279...159,389,267
Ensembl chr 5:159,361,314...159,389,298 		JBrowse link
G Dnm2 dynamin 2 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:29437695), (PMID:32315611)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:29437695 PMID:32315611 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:28,254,344...28,336,297
Ensembl chr 8:28,254,529...28,336,295 		JBrowse link
G Dram2 DNA damage regulated autophagy modulator 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:196,724,052...196,752,645
Ensembl chr 2:196,723,858...196,755,103 		JBrowse link
G Drd2 dopamine receptor D2 IDA RGD PMID:26649942 RGD:13506953 NCBI chr 8:58,605,403...58,669,339
Ensembl chr 8:58,605,403...58,669,339 		JBrowse link
G Drd3 dopamine receptor D3 IMP RGD PMID:26649942 RGD:13506953 NCBI chr11:70,385,586...70,437,793
Ensembl chr11:70,385,586...70,446,760 		JBrowse link
G Ei24 EI24, autophagy associated transmembrane protein acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:2176173|MGI:5475023 (PMID:23074225)
GO_REF:0000043
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:23074225 GO_REF:0000043 GO_REF:0000107 NCBI chr 8:44,683,138...44,699,502
Ensembl chr 8:44,683,144...44,695,214 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:198,777,323...198,856,497
Ensembl chr 2:198,777,323...198,856,497 		JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within ISO (PMID:27715390) RGD PMID:27715390 NCBI chr 8:119,158,380...119,173,483
Ensembl chr 8:119,158,396...119,174,244 		JBrowse link
G ENSRNOG00000062718 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G ENSRNOG00000063835 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G ENSRNOG00000066153 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G ENSRNOG00000067112 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G ENSRNOG00000069013 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G Epg5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:5505596 (PMID:23479740)
GO_REF:0000107
GO_REF:0000043 		RGD
Ensembl
UniProt		 PMID:23479740 GO_REF:0000043 GO_REF:0000107 NCBI chr18:73,679,106...73,776,694
Ensembl chr18:73,679,116...73,776,677 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:2182627 (PMID:24914213)
GO_REF:0000107
GO_REF:0000043 		RGD
Ensembl
UniProt		 PMID:24914213 GO_REF:0000043 GO_REF:0000107 NCBI chr 1:7,547,369...7,673,449
Ensembl chr 1:7,547,342...7,669,604 		JBrowse link
G Eva1a eva-1 homolog A, regulator of programmed cell death acts_upstream_of_or_within
involved_in 		ISO
IBA 		(PMID:28151473)
GO_REF:0000033 		RGD
GO_Central		 PMID:28151473 GO_REF:0000033 NCBI chr 4:116,151,595...116,200,827
Ensembl chr 4:116,151,173...116,200,827 		JBrowse link
G Fn1 fibronectin 1 acts_upstream_of_or_within ISO (PMID:25891078) RGD PMID:25891078 NCBI chr 9:80,645,507...80,714,200
Ensembl chr 9:80,645,507...80,714,137 		JBrowse link
G Fnbp1l formin binding protein 1-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:213,331,871...213,432,821
Ensembl chr 2:213,318,662...213,423,051 		JBrowse link
G Foxo1 forkhead box O1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:138,462,974...138,541,420
Ensembl chr 2:138,462,697...138,541,419 		JBrowse link
G Fundc1 FUN14 domain containing 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:7,666,787...7,683,443
Ensembl chr  X:7,666,759...7,683,441 		JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:55,213,465...55,216,787
Ensembl chr10:55,212,075...55,216,154 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:164,666,332...164,675,474
Ensembl chr 4:164,666,246...164,674,578 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:56,819,826...56,830,662
Ensembl chr19:56,819,791...56,830,660 		JBrowse link
G Gabarapl3 GABA type A receptor associated protein like 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:98,126,056...98,127,013 JBrowse link
G Gabarapl4 gamma-aminobutyric acid receptor associated protein like 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:71,949,837...71,950,435 JBrowse link
G Gba1 glucosylceramidase beta 1 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:27378698)
GO_REF:0000117
GO_REF:0000107
(PMID:23707074) 		RGD
UniProt
Ensembl		 PMID:23707074 PMID:27378698 GO_REF:0000107 GO_REF:0000117 NCBI chr 2:176,902,141...176,916,015
Ensembl chr 2:176,907,154...176,916,985 		JBrowse link
G Gimap6 GTPase, IMAP family member 6 acts_upstream_of_or_within ISO
IEA 		(PMID:35551368)
GO_REF:0000107 		RGD
Ensembl		 PMID:35551368 GO_REF:0000107 NCBI chr 4:78,984,597...78,990,006
Ensembl chr 4:78,983,504...78,990,010 		JBrowse link
G Gramd1a GRAM domain containing 1A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:95,494,378...95,520,730
Ensembl chr 1:95,494,378...95,520,716 		JBrowse link
G Gusb glucuronidase, beta acts_upstream_of_or_within ISO (PMID:28872463) RGD PMID:28872463 NCBI chr12:32,337,281...32,350,838
Ensembl chr12:32,334,075...32,363,024 		JBrowse link
G Hap1 huntingtin-associated protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:85,778,267...85,786,553
Ensembl chr10:85,778,267...85,786,503 		JBrowse link
G Haus8l2 HAUS augmin-like complex, subunit 8 like 2 involved_in IEA GO_REF:0000043
GO_REF:0000117 		UniProt GO_REF:0000043 GO_REF:0000117 NCBI chr11:19,074,905...19,077,014 JBrowse link
G Hdac10 histone deacetylase 10 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:122,078,768...122,084,457
Ensembl chr 7:122,078,768...122,083,870 		JBrowse link
G Hdac6 histone deacetylase 6 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:17,222,538...17,244,373
Ensembl chr  X:17,222,856...17,244,370 		JBrowse link
G Herc1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 acts_upstream_of ISO
IEA 		MGI:3613033 (PMID:20041218)
GO_REF:0000107 		RGD
Ensembl		 PMID:20041218 GO_REF:0000107 NCBI chr 8:75,796,347...75,965,347
Ensembl chr 8:75,796,357...75,965,347 		JBrowse link
G Hmga1 high mobility group AT-hook 1 acts_upstream_of_or_within ISO (PMID:32123163) RGD PMID:32123163 NCBI chr20:5,612,902...5,620,596
Ensembl chr20:5,613,471...5,620,593 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:11,009,236...11,015,941
Ensembl chr16:39,039,050...39,041,327
Ensembl chr12:39,039,050...39,041,327 		JBrowse link
G Hmgb1l2 high mobility group box 1 like 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:112,467,960...112,469,220
Ensembl chr  X:112,432,846...112,469,219
Ensembl chr16:112,432,846...112,469,219 		JBrowse link
G Hsc70-ps1 heat shock cognate protein 70, pseudogene 1 involved_in IEA GO_REF:0000117
GO_REF:0000043 		UniProt GO_REF:0000043 GO_REF:0000117 NCBI chr 2:166,342,557...166,344,675
Ensembl chr 2:166,342,657...166,344,897 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in IEA GO_REF:0000043
GO_REF:0000117 		UniProt GO_REF:0000043 GO_REF:0000117 NCBI chr 8:50,080,514...50,084,376
Ensembl chr 8:50,080,199...50,084,372 		JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta acts_upstream_of_or_within ISO (PMID:25891078) RGD PMID:25891078 NCBI chr16:76,021,968...76,075,717
Ensembl chr16:76,022,008...76,081,911 		JBrowse link
G Inhba inhibin subunit beta A IDA RGD PMID:27769861 RGD:329853763 NCBI chr17:53,787,159...53,810,942
Ensembl chr17:53,791,444...53,804,508 		JBrowse link
G Irgm immunity-related GTPase M involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000043
(PMID:25891078) 		UniProt
RGD		 PMID:25891078 GO_REF:0000043 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,732,961...33,743,228 		JBrowse link
G Itga5 integrin subunit alpha 5 acts_upstream_of_or_within ISO (PMID:25891078) RGD PMID:25891078 NCBI chr 7:136,358,097...136,381,305
Ensembl chr 7:136,358,097...136,381,305 		JBrowse link
G Itgb1 integrin subunit beta 1 acts_upstream_of_or_within ISO (PMID:25891078) RGD PMID:25891078 NCBI chr19:73,602,277...73,650,271
Ensembl chr19:73,602,126...73,650,269 		JBrowse link
G Itgb4 integrin subunit beta 4 involved_in IEA
ISO 		GO_REF:0000107
(PMID:24007983) 		Ensembl
RGD		 PMID:24007983 GO_REF:0000107 NCBI chr10:101,705,592...101,741,933
Ensembl chr10:101,705,587...101,741,932 		JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 involved_in ISO
IEA 		(PMID:12221139)
GO_REF:0000107
GO_REF:0000043 		RGD
Ensembl
UniProt		 PMID:12221139 GO_REF:0000043 GO_REF:0000107 NCBI chr  X:122,038,734...122,087,745
Ensembl chr  X:121,922,187...122,087,675 		JBrowse link
G Lgals8 galectin 8 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:62,716,368...62,744,272
Ensembl chr17:62,719,828...62,744,482 		JBrowse link
G LOC100363472 nuclear receptor-binding factor 2-like involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000043
GO_REF:0000002 		GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr14:9,288,591...9,290,533 JBrowse link
G LOC134483981 high mobility group protein B1-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:232,223,702...232,226,269
Ensembl chr 1:232,223,273...232,224,642
Ensembl chr16:232,223,273...232,224,642 		JBrowse link
G LOC134485624 high mobility group protein B1-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:152,634,059...152,634,929
Ensembl chr16:39,039,050...39,041,327 		JBrowse link
G Lrpprc leucine-rich pentatricopeptide repeat containing involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:15,612,638...15,695,113
Ensembl chr 6:15,612,655...15,695,116 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:124,706,246...124,867,234
Ensembl chr 7:124,706,080...124,867,239 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:36,621,042...36,661,932
Ensembl chr 3:36,621,042...36,661,825 		JBrowse link
G Lyn LYN proto-oncogene, Src family tyrosine kinase acts_upstream_of_or_within ISO
IEA 		MGI:2444304 (PMID:33941276)
GO_REF:0000107 		RGD
Ensembl		 PMID:33941276 GO_REF:0000107 NCBI chr 5:21,437,127...21,553,097
Ensembl chr 5:21,437,084...21,554,461 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in IDA
IEA 		GO_REF:0000043 UniProt
RGD		 PMID:16420522 GO_REF:0000043, RGD:1643189 NCBI chr 3:164,243,204...164,244,850
Ensembl chr 3:164,243,093...164,244,850 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO
IEA 		(PMID:23629966)
GO_REF:0000043 		RGD
UniProt		 PMID:23629966 GO_REF:0000043 NCBI chr19:66,571,631...66,582,270
Ensembl chr19:66,574,407...66,584,358
Ensembl chr16:66,574,407...66,584,358 		JBrowse link
G Mapk8 mitogen-activated protein kinase 8 acts_upstream_of_or_within ISO (PMID:25891078) RGD PMID:25891078 NCBI chr16:8,645,171...8,728,225
Ensembl chr16:8,645,198...8,728,427 		JBrowse link
G Mfn2 mitofusin 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:163,587,463...163,617,363
Ensembl chr 5:163,587,463...163,618,495 		JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within ISO
IEA 		(PMID:35087090)
GO_REF:0000107 		RGD
Ensembl		 PMID:35087090 GO_REF:0000107 NCBI chr 2:125,749,994...125,784,689
Ensembl chr 2:125,749,994...125,785,919 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO
IEA 		MGI:1934018 (PMID:26147524), (PMID:26607664)
GO_REF:0000107 		RGD
Ensembl		 PMID:26147524 PMID:26607664 GO_REF:0000107 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,501,836...86,509,315 		JBrowse link
G Nhlrc1 NHL repeat containing E3 ubiquitin protein ligase 1 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:3808349 (PMID:24914213)
GO_REF:0000043
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:24914213 GO_REF:0000043 GO_REF:0000107 NCBI chr17:17,880,570...17,883,411
Ensembl chr17:17,880,365...17,883,620 		JBrowse link
G Nipsnap1 nipsnap homolog 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:83,957,714...83,981,579
Ensembl chr14:83,957,702...83,981,576 		JBrowse link
G Nipsnap2 nipsnap homolog 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:32,542,171...32,580,345
Ensembl chr12:32,547,819...32,580,303 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:34,555,832...34,722,846 		JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of_or_within ISO
IEA 		UniProtKB:P10636 (PMID:19074461)
GO_REF:0000107 		RGD
Ensembl		 PMID:19074461 GO_REF:0000107 NCBI chr18:3,654,237...3,699,853
Ensembl chr18:3,654,237...3,699,800 		JBrowse link
G Nrbf2 nuclear receptor binding factor 2 involved_in ISO
IEA
IBA 		(PMID:24785657)
GO_REF:0000043
(PMID:24849286)
GO_REF:0000033
GO_REF:0000002 		RGD
UniProt
GO_Central
InterPro		 PMID:24785657 PMID:24849286 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr20:21,307,389...21,325,724
Ensembl chr20:21,290,787...21,325,724 		JBrowse link
G Nrbf2l1 nuclear receptor binding factor 2 like 1 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000043
GO_REF:0000002 		GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr 2:184,940,723...184,949,297
Ensembl chr 2:184,943,771...184,944,634 		JBrowse link
G Optn optineurin involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:78,118,847...78,169,543
Ensembl chr17:78,118,866...78,169,543 		JBrowse link
G Park7 Parkinsonism associated deglycase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:166,636,551...166,659,825
Ensembl chr 5:166,636,552...166,659,825 		JBrowse link
G Phf23 PHD finger protein 23 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:55,217,351...55,221,471
Ensembl chr10:55,217,351...55,221,471 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:25327288)
(PMID:28872463)
GO_REF:0000043
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:25327288 PMID:28872463 GO_REF:0000043 GO_REF:0000107 NCBI chr18:22,119,677...22,203,546
Ensembl chr18:22,119,792...22,203,539 		JBrowse link
G Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:108,474,017...108,579,140
Ensembl chr 8:108,474,019...108,579,331 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:155,813,838...155,825,950
Ensembl chr 5:155,813,838...155,825,950 		JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:88,814,699...88,876,570
Ensembl chr10:88,814,699...88,862,544 		JBrowse link
G Pmp22 peripheral myelin protein 22 acts_upstream_of_or_within ISO MGI:1856217|MGI:2447704 (PMID:14627652), (PMID:17174099), (PMID:25014022) RGD PMID:14627652 PMID:17174099 PMID:25014022 NCBI chr10:48,294,932...48,324,941
Ensembl chr10:48,297,437...48,324,940 		JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000043
(PMID:25891078) 		UniProt
RGD		 PMID:25891078 GO_REF:0000043 NCBI chr 2:55,967,766...56,003,450
Ensembl chr 2:55,967,351...56,003,450 		JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:125,036,945...125,109,010
Ensembl chr 5:125,042,179...125,108,324 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IEA GO_REF:0000043
GO_REF:0000104 		UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 1:51,236,410...52,430,242
Ensembl chr 1:51,210,330...52,430,304 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO
IEA 		MGI:1930934 (PMID:15123735)
GO_REF:0000107 		RGD
Ensembl		 PMID:15123735 GO_REF:0000107 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:109,060,352...109,106,189 		JBrowse link
G Rab12 RAB12, member RAS oncogene family involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:113,927,119...113,953,722
Ensembl chr 9:113,927,119...113,953,695 		JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO
IEA
ISS 		(PMID:22939626)
GO_REF:0000043
GO_REF:0000024 		RGD
UniProt		 PMID:22939626 GO_REF:0000024 GO_REF:0000043 NCBI chr14:98,623,582...98,648,766
Ensembl chr14:98,623,635...98,661,582 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:211,835,133...211,843,408
Ensembl chr 1:211,835,073...211,843,337
Ensembl chr  X:211,835,073...211,843,337 		JBrowse link
G Rab24 RAB24, member RAS oncogene family involved_in IEA
ISO 		GO_REF:0000043
(PMID:26325487) 		UniProt
RGD		 PMID:26325487 GO_REF:0000043 NCBI chr17:9,313,593...9,315,675
Ensembl chr17:9,313,593...9,316,575 		JBrowse link
G Rab39a RAB39A, member RAS oncogene family involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:62,984,434...63,002,053
Ensembl chr 8:62,984,434...63,002,053 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:122,019,281...122,068,067
Ensembl chr 4:121,983,938...122,064,185 		JBrowse link
G Rab8a RAB8A, member RAS oncogene family involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:17,688,049...17,709,412
Ensembl chr16:17,688,050...17,709,477 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:2176173|MGI:3526069 (PMID:31006538)
GO_REF:0000107
GO_REF:0000043
(PMID:18443221) 		RGD
Ensembl
UniProt		 PMID:18443221 PMID:31006538 GO_REF:0000043 GO_REF:0000107 NCBI chr 5:17,948,522...18,012,434
Ensembl chr 5:17,948,522...18,012,434 		JBrowse link
G Retreg1 reticulophagy regulator 1 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:31446166)
GO_REF:0000043 		RGD
UniProt		 PMID:31446166 GO_REF:0000043 NCBI chr 2:78,045,435...78,205,316
Ensembl chr 2:78,066,031...78,225,356 		JBrowse link
G Retreg2 reticulophagy regulator family member 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:84,088,935...84,095,072
Ensembl chr 9:84,088,964...84,094,837 		JBrowse link
G Retreg3 reticulophagy regulator family member 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:86,529,048...86,552,873
Ensembl chr10:86,529,055...86,552,990 		JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISO
IEA
IBA
ISS 		(PMID:24549040)
GO_REF:0000043
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024 		RGD
UniProt
GO_Central
Ensembl		 PMID:24549040 GO_REF:0000024 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 NCBI chr 5:54,562,570...54,587,649
Ensembl chr 5:54,562,570...54,587,637 		JBrowse link
G Rmc1 regulator of MON1-CCZ1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr18:3,634,604...3,654,519
Ensembl chr18:3,634,588...3,654,549 		JBrowse link
G Rnf166 ring finger protein 166 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:67,437,974...67,447,814
Ensembl chr19:67,437,974...67,447,814 		JBrowse link
G Rnf185 ring finger protein 185 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:82,516,153...82,554,199
Ensembl chr14:82,516,154...82,553,466 		JBrowse link
G Rubcn rubicon autophagy regulator involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:81,420,261...81,469,415
Ensembl chr11:81,412,617...81,469,424 		JBrowse link
G Rubcnl rubicon like autophagy enhancer involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:56,741,897...56,807,086
Ensembl chr15:56,741,869...56,779,649 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:83,152,139...83,172,683
Ensembl chr 9:83,154,445...83,172,897 		JBrowse link
G S100a8 S100 calcium binding protein A8 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000043
GO_REF:0000107
(PMID:19935772) 		UniProt
Ensembl
RGD		 PMID:19935772 GO_REF:0000024 GO_REF:0000043 GO_REF:0000107 NCBI chr 2:178,464,095...178,465,223
Ensembl chr 2:178,464,702...178,465,221 		JBrowse link
G S100a9 S100 calcium binding protein A9 involved_in IEA
ISS
ISO 		GO_REF:0000107
GO_REF:0000043
GO_REF:0000024
(PMID:19935772) 		Ensembl
UniProt
RGD		 PMID:19935772 GO_REF:0000024 GO_REF:0000043 GO_REF:0000107 NCBI chr 2:178,487,941...178,490,622
Ensembl chr 2:178,487,941...178,490,870 		JBrowse link
G Scarb2 scavenger receptor class B, member 2 involved_in ISO (PMID:25316793) RGD PMID:25316793 NCBI chr14:15,842,583...15,894,123
Ensembl chr14:15,842,515...15,896,671 		JBrowse link
G Sirt2 sirtuin 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:93,181,472...93,204,499
Ensembl chr 1:93,181,224...93,204,499 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:45,957,146...45,968,388
Ensembl chr10:45,957,104...45,968,389 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO (PMID:37330913) RGD PMID:37330913 NCBI chr12:14,748,717...14,840,273
Ensembl chr12:14,749,043...14,840,273 		JBrowse link
G Snap29 synaptosome associated protein 29 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:97,082,721...97,113,195
Ensembl chr11:97,082,739...97,113,195 		JBrowse link
G Sqstm1 sequestosome 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
GO_REF:0000043
(PMID:20173742), (PMID:20421418)
(PMID:17580304), (PMID:20452972) 		UniProt
Ensembl
RGD		 PMID:17580304 PMID:20173742 PMID:20421418 PMID:20452972 GO_REF:0000024 GO_REF:0000043 GO_REF:0000107 NCBI chr10:35,026,598...35,037,750
Ensembl chr10:35,026,598...35,037,750 		JBrowse link
G Srpx sushi-repeat-containing protein, X-linked acts_upstream_of_or_within ISO
IEA 		MGI:3706175 (PMID:19368996)
GO_REF:0000107 		RGD
Ensembl		 PMID:19368996 GO_REF:0000107 NCBI chr  X:15,349,498...15,420,389
Ensembl chr  X:15,349,440...15,420,392 		JBrowse link
G Stbd1 starch binding domain 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:15,754,769...15,758,174
Ensembl chr14:15,754,644...15,761,659 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr18:27,606,196...27,612,544
Ensembl chr18:27,606,196...27,611,947 		JBrowse link
G Stk11 serine/threonine kinase 11 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:10,225,204...10,241,965
Ensembl chr 7:10,225,204...10,241,965 		JBrowse link
G Stx17 syntaxin 17 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:67,241,673...67,302,228
Ensembl chr 5:67,241,727...67,302,218 		JBrowse link
G Syt11 synaptotagmin 11 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:27278822)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:27278822 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:176,503,845...176,530,354
Ensembl chr 2:176,503,845...176,529,775 		JBrowse link
G Tbc1d17 TBC1 domain family, member 17 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:104,461,266...104,469,615
Ensembl chr 1:104,461,267...104,469,489 		JBrowse link
G Tbc1d25 TBC1 domain family, member 25 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:16,986,629...17,010,228
Ensembl chr  X:16,986,269...17,010,230 		JBrowse link
G Tbc1d5 TBC1 domain family, member 5 involved_in ISO
IEA 		(PMID:22354992)
GO_REF:0000043 		RGD
UniProt		 PMID:22354992 GO_REF:0000043 NCBI chr 9:3,740,032...4,256,971
Ensembl chr 9:3,750,325...4,253,581 		JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO
IEA 		(PMID:23908015)
GO_REF:0000107 		RGD
Ensembl		 PMID:23908015 GO_REF:0000107 NCBI chr 1:210,556,270...210,568,021
Ensembl chr 1:210,556,270...210,568,033 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISO
IEA
ISS 		(PMID:21575909)
GO_REF:0000043
GO_REF:0000107
GO_REF:0000024 		RGD
UniProt
Ensembl		 PMID:21575909 GO_REF:0000024 GO_REF:0000043 GO_REF:0000107 NCBI chr12:15,504,456...15,534,541
Ensembl chr12:15,505,343...15,534,116 		JBrowse link
G Tgfbrap1 transforming growth factor, beta receptor associated protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:52,813,087...52,863,441
Ensembl chr 9:52,813,087...52,863,441 		JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:161,613,306...161,632,248
Ensembl chr 4:161,613,306...161,632,229 		JBrowse link
G Tm9sf1 transmembrane 9 superfamily member 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:33,097,541...33,108,106
Ensembl chr15:33,097,552...33,105,290 		JBrowse link
G Tmbim6 transmembrane BAX inhibitor motif containing 6 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:132,405,217...132,422,492
Ensembl chr 7:132,386,134...132,422,492 		JBrowse link
G Tmem150b transmembrane protein 150B involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:78,153,729...78,164,149
Ensembl chr 1:78,153,961...78,169,810 		JBrowse link
G Tmem39a transmembrane protein 39a involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:75,666,154...75,695,486
Ensembl chr11:75,666,154...75,695,486 		JBrowse link
G Tmem41b transmembrane protein 41B involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:173,447,362...173,461,760
Ensembl chr 1:173,447,367...173,461,597 		JBrowse link
G Tmem59 transmembrane protein 59 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:127,191,320...127,212,436
Ensembl chr 5:127,191,030...127,217,531 		JBrowse link
G Tollip toll interacting protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:206,391,120...206,413,809
Ensembl chr 1:206,380,308...206,411,988 		JBrowse link
G Tp53 tumor protein p53 involved_in ISO
IEA 		(PMID:23629966)
GO_REF:0000107 		RGD
Ensembl		 PMID:23629966 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,798,851...54,810,299 		JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:29,051,267...29,069,486
Ensembl chr 5:29,051,264...29,069,484 		JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:164,341,618...164,350,270
Ensembl chr 3:164,343,205...164,350,225 		JBrowse link
G Trappc4 trafficking protein particle complex subunit 4 involved_in ISO
IEA
ISS 		(PMID:31794024)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:31794024 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:53,626,382...53,630,042
Ensembl chr 8:53,625,474...53,630,241 		JBrowse link
G Trim17 tripartite motif-containing 17 involved_in ISO
IEA 		(PMID:25127057)
GO_REF:0000107 		RGD
Ensembl		 PMID:25127057 GO_REF:0000107 NCBI chr10:44,242,688...44,250,504
Ensembl chr10:44,240,184...44,250,494 		JBrowse link
G Trim5 tripartite motif-containing 5 involved_in ISO (PMID:25127057) RGD PMID:25127057 NCBI chr 1:168,132,277...168,149,263
Ensembl chr 1:168,132,308...168,141,657 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:6,438,456...6,482,498
Ensembl chr17:6,444,124...6,482,499 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:21,228,809...21,232,228
Ensembl chr  X:21,229,197...21,232,268 		JBrowse link
G Ubqln4 ubiquilin 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:176,310,524...176,325,724
Ensembl chr 2:176,310,568...176,325,924 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in
acts_upstream_of_or_within 		ISO
IEA 		UniProtKB:Q8IYT8 (PMID:17595159), (PMID:18936157), (PMID:25891078), (PMID:28389568)
(PMID:25891078)
GO_REF:0000107
GO_REF:0000043
GO_REF:0000104
GO_REF:0000117
(PMID:18443221), (PMID:21258367) 		RGD
Ensembl
UniProt		 PMID:17595159 PMID:18443221 PMID:18936157 PMID:21258367 PMID:25891078 More... GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 GO_REF:0000117 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:51,511,492...51,537,746 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in ISO
IEA 		UniProtKB:O75385 (PMID:18936157), (PMID:28389568)
GO_REF:0000043
GO_REF:0000107
GO_REF:0000117
(PMID:18443221) 		RGD
UniProt
Ensembl		 PMID:18443221 PMID:18936157 PMID:28389568 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 NCBI chr10:46,951,038...47,029,844
Ensembl chr10:46,951,038...47,029,844 		JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IEA GO_REF:0000117
GO_REF:0000043 		UniProt GO_REF:0000043 GO_REF:0000117 NCBI chr 8:66,888,820...66,895,380
Ensembl chr 8:66,888,788...66,895,379 		JBrowse link
G Umod uromodulin acts_upstream_of_or_within ISO
IEA 		(PMID:28990932)
GO_REF:0000107 		RGD
Ensembl		 PMID:28990932 GO_REF:0000107 NCBI chr 1:183,247,676...183,261,665
Ensembl chr 1:183,247,674...183,261,030 		JBrowse link
G Usp10 ubiquitin specific peptidase 10 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:64,881,255...64,923,522
Ensembl chr19:64,881,315...64,923,519 		JBrowse link
G Usp13 ubiquitin specific peptidase 13 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:117,502,811...117,617,049
Ensembl chr 2:117,505,122...117,630,161 		JBrowse link
G Uvrag UV radiation resistance associated involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:24056303)
(PMID:28872463)
GO_REF:0000107 		RGD
Ensembl		 PMID:24056303 PMID:28872463 GO_REF:0000107 NCBI chr 1:162,596,514...162,854,348
Ensembl chr 1:162,596,515...162,854,348 		JBrowse link
G Vamp8 vesicle-associated membrane protein 8 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:106,000,570...106,011,081
Ensembl chr 4:106,000,570...106,011,073 		JBrowse link
G Vcp valosin-containing protein involved_in ISO
IEA
ISS 		(PMID:20104022), (PMID:25125609)
GO_REF:0000043
GO_REF:0000107
GO_REF:0000024 		RGD
UniProt
Ensembl		 PMID:20104022 PMID:25125609 GO_REF:0000024 GO_REF:0000043 GO_REF:0000107 NCBI chr 5:62,005,984...62,025,387
Ensembl chr 5:62,005,985...62,025,387 		JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO
IEA
IDA 		(PMID:28890335)
GO_REF:0000107
GO_REF:0000043
(PMID:17940279) 		RGD
Ensembl
UniProt		 PMID:17940279 PMID:28890335 PMID:17940279 GO_REF:0000043 GO_REF:0000107, RGD:8554414 NCBI chr10:71,903,223...72,002,337
Ensembl chr10:71,903,227...72,002,319 		JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in IEA GO_REF:0000104
GO_REF:0000043 		UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 8:53,580,939...53,595,378
Ensembl chr 8:53,580,939...53,595,377 		JBrowse link
G Vps13a vacuolar protein sorting 13 homolog A acts_upstream_of_or_within
involved_in 		ISO
IEA
IBA 		(PMID:25996471)
GO_REF:0000107
GO_REF:0000033
MGI:96892 (PMID:33941276) 		RGD
Ensembl
GO_Central		 PMID:25996471 PMID:33941276 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:223,328,784...223,555,500
Ensembl chr 1:223,328,784...223,555,331 		JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in ISO
IEA
IBA 		(PMID:24554770)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:24554770 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:127,721,076...127,758,658
Ensembl chr 3:127,721,076...127,758,768 		JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:50,758,732...50,923,129
Ensembl chr17:50,758,734...50,923,133 		JBrowse link
G Vps51 VPS51 subunit of GARP complex involved_in ISO
IEA 		(PMID:20685960)
GO_REF:0000107 		RGD
Ensembl		 PMID:20685960 GO_REF:0000107 NCBI chr 1:212,789,721...212,799,708
Ensembl chr 1:212,789,721...212,799,708 		JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A involved_in ISO (PMID:24095276) RGD PMID:24095276 NCBI chr 1:264,361,538...264,667,171
Ensembl chr 1:264,361,522...264,668,727 		JBrowse link
G Wdfy3 WD repeat and FYVE domain containing 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:7,873,946...8,115,002
Ensembl chr14:7,911,151...8,114,993 		JBrowse link
G Wdr24 WD repeat domain 24 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:15,346,835...15,353,384
Ensembl chr10:15,348,241...15,353,582 		JBrowse link
G Wdr41 WD repeat domain 41 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:27,957,453...28,008,573
Ensembl chr 2:27,957,492...28,008,573 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
GO_REF:0000043
(PMID:23435086) 		UniProt
Ensembl
RGD		 PMID:23435086 GO_REF:0000024 GO_REF:0000043 GO_REF:0000107 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:17,448,207...17,454,117 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:107,097,655...107,127,839
Ensembl chr10:107,097,755...107,127,831 		JBrowse link
G Wdr47 WD repeat domain 47 acts_upstream_of_or_within ISO
IEA 		MGI:4433065 (PMID:29078390)
GO_REF:0000107 		RGD
Ensembl		 PMID:29078390 GO_REF:0000107 NCBI chr 2:198,914,977...198,975,844
Ensembl chr 2:198,914,940...198,975,841 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO
IEA 		(PMID:15602573), (PMID:17618624)
GO_REF:0000107
GO_REF:0000043 		RGD
Ensembl
UniProt		 PMID:15602573 PMID:17618624 GO_REF:0000043 GO_REF:0000107 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:95,042,441...95,079,293 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:17,024,878...17,071,406 		JBrowse link
autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:41,638,841...41,649,311
Ensembl chr18:41,635,835...41,649,261 		JBrowse link
G Atg2a autophagy related 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:212,971,822...212,991,505
Ensembl chr 1:212,971,844...212,991,528 		JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:130,286,979...130,357,109
Ensembl chr 6:130,286,986...130,357,109 		JBrowse link
G Atg3 autophagy related 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:69,130,948...69,159,280
Ensembl chr11:69,121,952...69,159,280 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:23981124) RGD PMID:23981124 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:149,391,390...149,598,319 		JBrowse link
G Capn10 calpain 10 IMP RGD PMID:22568896 RGD:7247732 NCBI chr 9:100,943,665...100,957,910
Ensembl chr 9:100,945,551...100,957,912 		JBrowse link
G Cdkn2a cyclin-dependent kinase inhibitor 2A involved_in ISO (PMID:25217637) RGD PMID:25217637 NCBI chr 5:109,100,763...109,114,448
Ensembl chr 5:109,100,772...109,119,248 		JBrowse link
G Cisd2 CDGSH iron sulfur domain 2 involved_in ISO
IBA 		(PMID:19451219)
GO_REF:0000033 		RGD
GO_Central		 PMID:19451219 GO_REF:0000033 NCBI chr 2:226,502,517...226,527,325
Ensembl chr 2:226,502,517...226,540,080 		JBrowse link
G Fbxl4 F-box and leucine-rich repeat protein 4 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:32525278)
GO_REF:0000117
GO_REF:0000107
MGI:6514034 (PMID:32525278) 		RGD
UniProt
Ensembl		 PMID:32525278 GO_REF:0000107 GO_REF:0000117 NCBI chr 5:40,752,513...40,826,154
Ensembl chr 5:40,752,521...40,850,826 		JBrowse link
G Fbxo7 F-box protein 7 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:23933751) 		UniProt
Ensembl
RGD		 PMID:23933751 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:19,696,951...19,725,180
Ensembl chr 7:19,696,961...19,725,180 		JBrowse link
G Fundc1 FUN14 domain containing 1 involved_in
acts_upstream_of_or_within 		ISS
IEA
IBA
ISO 		GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
UniProtKB:Q9H492 (PMID:22267086) 		UniProt
Ensembl
GO_Central
RGD		 PMID:22267086 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:7,666,787...7,683,443
Ensembl chr  X:7,666,759...7,683,441 		JBrowse link
G Fundc2 FUN14 domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:142,829...155,123
Ensembl chr18:142,640...155,674 		JBrowse link
G Fundc2b FUN14 domain containing 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:125,805,786...125,808,033
Ensembl chr 2:125,806,219...125,808,084 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha acts_upstream_of_or_within ISO
IEA 		UniProtKB:Q8IVP5 (PMID:22267086)
GO_REF:0000107 		RGD
Ensembl		 PMID:22267086 GO_REF:0000107 NCBI chr 3:164,243,204...164,244,850
Ensembl chr 3:164,243,093...164,244,850 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO
IEA
IBA 		(PMID:20798600), (PMID:23933751), (PMID:24896179)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:20798600 PMID:23933751 PMID:24896179 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:155,813,838...155,825,950
Ensembl chr 5:155,813,838...155,825,950 		JBrowse link
G Ppargc1a PPARG coactivator 1 alpha IEP RGD PMID:19783904 RGD:10059673 NCBI chr14:63,073,505...63,729,215
Ensembl chr14:63,273,189...63,729,213 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:19029340), (PMID:23933751), (PMID:24896179), (PMID:25621951) 		ParkinsonsUK-UCL
Ensembl
RGD
UniProt		 PMID:19029340 PMID:23933751 PMID:24896179 PMID:25621951 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:51,236,410...52,430,242
Ensembl chr 1:51,210,330...52,430,304 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:17,948,522...18,012,434
Ensembl chr 5:17,948,522...18,012,434 		JBrowse link
G Slc25a46 solute carrier family 25, member 46 acts_upstream_of_or_within ISO
IEA 		MGI:6358090 (PMID:28934388)
GO_REF:0000107 		RGD
Ensembl		 PMID:28934388 GO_REF:0000107 NCBI chr18:23,490,422...23,519,599
Ensembl chr18:23,490,425...23,518,730 		JBrowse link
G Usp30 ubiquitin specific peptidase 30 involved_in ISO
IEA 		(PMID:24896179), (PMID:25621951)
GO_REF:0000107 		RGD
Ensembl		 PMID:24896179 PMID:25621951 GO_REF:0000107 NCBI chr12:48,161,905...48,215,878
Ensembl chr12:48,161,908...48,215,968 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:17,448,207...17,454,117 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:107,097,655...107,127,839
Ensembl chr10:107,097,755...107,127,831 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:95,042,441...95,079,293 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:17,024,878...17,071,406 		JBrowse link
chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg5 autophagy related 5 involved_in IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:49,380,813...49,471,821 		JBrowse link
G Atg7 autophagy related 7 involved_in IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:149,391,390...149,598,319 		JBrowse link
G Bag3 BAG cochaperone 3 involved_in IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr 1:192,533,460...192,557,281
Ensembl chr 1:192,475,828...192,557,280 		JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 involved_in NAS PMID:18644871 ParkinsonsUK-UCL PMID:18644871 RGD:10412301 NCBI chr 6:135,523,604...135,529,687
Ensembl chr 6:135,523,616...135,528,499 		JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 involved_in NAS PMID:18644871 ParkinsonsUK-UCL PMID:18644871 RGD:10412301 NCBI chr 9:22,930,249...22,935,929
Ensembl chr 9:22,931,070...22,935,926 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in
acts_upstream_of_or_within 		IDA
ISO
IGI 		PMID:18644871
(PMID:36586411) 		RGD PMID:36586411 PMID:18644871 PMID:18644871 RGD:10412301, RGD:10412301 NCBI chr 8:50,080,514...50,084,376
Ensembl chr 8:50,080,199...50,084,372 		JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 involved_in
acts_upstream_of_or_within 		IDA
IEA
ISO 		PMID:11082038
GO_REF:0000107
UniProtKB:P13473 (PMID:18644871), (PMID:27628032)
(PMID:18579532)
(PMID:36586411)
(PMID:24880125), (PMID:27628032)
(PMID:8662539) 		Ensembl
RGD		 PMID:8662539 PMID:18579532 PMID:18644871 PMID:24880125 PMID:27628032 More... GO_REF:0000107, RGD:1581607 NCBI chr  X:122,038,734...122,087,745
Ensembl chr  X:121,922,187...122,087,675 		JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr10:15,355,278...15,357,559
Ensembl chr10:15,355,279...15,357,559 		JBrowse link
G Synpo2 synaptopodin 2 involved_in IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr 2:213,901,685...214,055,844
Ensembl chr 2:213,900,868...214,055,844 		JBrowse link
G Zdhhc12 zinc finger DHHC-type palmitoyltransferase 12 acts_upstream_of_or_within ISO (PMID:36586411) RGD PMID:36586411 NCBI chr 3:33,761,338...33,764,207
Ensembl chr 3:33,761,353...33,764,323 		JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO
IEA 		(PMID:22020285)
GO_REF:0000107 		RGD
Ensembl		 PMID:22020285 GO_REF:0000107 NCBI chr12:14,748,717...14,840,273
Ensembl chr12:14,749,043...14,840,273 		JBrowse link
glycophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:41,638,841...41,649,311
Ensembl chr18:41,635,835...41,649,261 		JBrowse link
G Atg2a autophagy related 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:212,971,822...212,991,505
Ensembl chr 1:212,971,844...212,991,528 		JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:130,286,979...130,357,109
Ensembl chr 6:130,286,986...130,357,109 		JBrowse link
G Atg3 autophagy related 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:69,130,948...69,159,280
Ensembl chr11:69,121,952...69,159,280 		JBrowse link
G Gaa alpha glucosidase involved_in ISO MGI:2148550 (PMID:12739885) RGD PMID:12739885 NCBI chr10:105,028,106...105,045,365
Ensembl chr10:105,028,307...105,045,366 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in ISO (PMID:20810658) RGD PMID:20810658 NCBI chr 4:164,666,332...164,675,474
Ensembl chr 4:164,666,246...164,674,578 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:17,948,522...18,012,434
Ensembl chr 5:17,948,522...18,012,434 		JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO
IEA
ISS 		(PMID:20810658)
GO_REF:0000117
GO_REF:0000107
GO_REF:0000024 		RGD
UniProt
Ensembl
GO_Central		 PMID:20810658 GO_REF:0000024 GO_REF:0000107 GO_REF:0000117 NCBI chr14:15,754,769...15,758,174
Ensembl chr14:15,754,644...15,761,659 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:17,448,207...17,454,117 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:107,097,655...107,127,839
Ensembl chr10:107,097,755...107,127,831 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:95,042,441...95,079,293 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:17,024,878...17,071,406 		JBrowse link
late endosomal microautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Haus8l2 HAUS augmin-like complex, subunit 8 like 2 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr11:19,074,905...19,077,014 JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in IEA
ISO 		GO_REF:0000107
(PMID:21238931) 		Ensembl
RGD		 PMID:21238931 GO_REF:0000107 NCBI chr 8:50,080,514...50,084,376
Ensembl chr 8:50,080,199...50,084,372 		JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in IEA
ISO 		GO_REF:0000107
(PMID:21238931) 		Ensembl
RGD		 PMID:21238931 GO_REF:0000107 NCBI chr19:51,838,411...51,858,639
Ensembl chr19:51,833,914...51,872,423 		JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B involved_in ISO (PMID:21238931) RGD PMID:21238931 NCBI chr13:23,421,758...23,446,848
Ensembl chr13:23,421,758...23,446,973 		JBrowse link
lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aup1 AUP1, lipid droplet regulating VLDL assembly factor involved_in ISO
IEA 		(PMID:29902443)
GO_REF:0000107 		RGD
Ensembl		 PMID:29902443 GO_REF:0000107 NCBI chr 4:117,118,035...117,121,063
Ensembl chr 4:117,117,999...117,121,061 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:23708524) 		GO_Central
Ensembl
RGD		 PMID:23708524 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:122,019,281...122,068,067
Ensembl chr 4:121,983,938...122,064,185 		JBrowse link
G Spart spartin involved_in ISO
IEA 		(PMID:37443287), (PMID:38190532)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:37443287 PMID:38190532 GO_REF:0000107 GO_REF:0000117 NCBI chr 2:141,442,770...141,469,388
Ensembl chr 2:141,442,737...141,469,382 		JBrowse link
macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in ISO (PMID:25484072)
(PMID:11266458) 		RGD PMID:11266458 PMID:25484072 NCBI chr18:41,638,841...41,649,311
Ensembl chr18:41,635,835...41,649,261 		JBrowse link
G Atg14 autophagy related 14 involved_in ISO
IEA 		(PMID:23878393)
GO_REF:0000107 		RGD
Ensembl		 PMID:23878393 GO_REF:0000107 NCBI chr15:23,275,457...23,306,817
Ensembl chr15:23,275,457...23,306,815 		JBrowse link
G Atg16l1 autophagy related 16-like 1 involved_in ISO
IEA 		(PMID:29317426), (PMID:33586810)
GO_REF:0000107
(PMID:11266458) 		RGD
Ensembl		 PMID:11266458 PMID:29317426 PMID:33586810 GO_REF:0000107 NCBI chr 9:95,869,839...95,905,354
Ensembl chr 9:95,869,865...95,905,357 		JBrowse link
G Atg16l2 autophagy related 16-like 2 involved_in ISO (PMID:11266458) RGD PMID:11266458 NCBI chr 1:165,100,946...165,123,307
Ensembl chr 1:165,102,936...165,115,473 		JBrowse link
G Atg3 autophagy related 3 acts_upstream_of_or_within ISO
IEA 		(PMID:24035364)
GO_REF:0000107 		RGD
Ensembl		 PMID:24035364 GO_REF:0000107 NCBI chr11:69,130,948...69,159,280
Ensembl chr11:69,121,952...69,159,280 		JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:25484072)
GO_REF:0000107
(PMID:11266458)
GO_REF:0000117
MGI:3612279 (PMID:20453062), (PMID:22496425), (PMID:23704209), (PMID:24035364) 		RGD
Ensembl
UniProt		 PMID:11266458 PMID:20453062 PMID:22496425 PMID:23704209 PMID:24035364 More... GO_REF:0000107 GO_REF:0000117 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:49,380,813...49,471,821 		JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:22354037)
GO_REF:0000107
MGI:1934631|MGI:3587769 (PMID:22496425), (PMID:23704209), (PMID:24035364) 		RGD
Ensembl		 PMID:22354037 PMID:22496425 PMID:23704209 PMID:24035364 GO_REF:0000107 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:149,391,390...149,598,319 		JBrowse link
G Becn1 beclin 1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:23332761)
MGI:1097712|MGI:2683833 (PMID:14657337), (PMID:17468177) 		UniProt
Ensembl
RGD		 PMID:14657337 PMID:17468177 PMID:23332761 GO_REF:0000024 GO_REF:0000107 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,731,650...86,747,002 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin acts_upstream_of_or_within ISO
IEA 		MGI:2388888 (PMID:16714284)
GO_REF:0000107 		RGD
Ensembl		 PMID:16714284 GO_REF:0000107 NCBI chr 1:190,586,649...190,600,034
Ensembl chr 1:190,586,650...190,597,929 		JBrowse link
G Ei24 EI24, autophagy associated transmembrane protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:44,683,138...44,699,502
Ensembl chr 8:44,683,144...44,695,214 		JBrowse link
G ENSRNOG00000067694 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G ENSRNOG00000067909 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Hdac10 histone deacetylase 10 involved_in ISO
ISS 		(PMID:23801752)
GO_REF:0000024 		RGD
UniProt		 PMID:23801752 GO_REF:0000024 NCBI chr 7:122,078,768...122,084,457
Ensembl chr 7:122,078,768...122,083,870 		JBrowse link
G Hmox1 heme oxygenase 1 acts_upstream_of ISO
IEA 		MGI:2429784 (PMID:20705711)
GO_REF:0000107 		RGD
Ensembl		 PMID:20705711 GO_REF:0000107 NCBI chr19:13,452,365...13,479,823
Ensembl chr19:13,472,884...13,479,818 		JBrowse link
G Ilrun inflammation and lipid regulator with UBA-like and NBR1-like domains involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:5,811,721...5,878,082
Ensembl chr20:5,811,734...5,877,978 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO
IEA 		(PMID:28223137)
GO_REF:0000107 		RGD
Ensembl		 PMID:28223137 GO_REF:0000107 NCBI chr 3:164,243,204...164,244,850
Ensembl chr 3:164,243,093...164,244,850 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO
IEA 		(PMID:28223137)
GO_REF:0000117 		RGD
UniProt		 PMID:28223137 GO_REF:0000117 NCBI chr19:66,571,631...66,582,270
Ensembl chr19:66,574,407...66,584,358
Ensembl chr16:66,574,407...66,584,358 		JBrowse link
G Mtor mechanistic target of rapamycin kinase acts_upstream_of ISO
IEA 		(PMID:16714284)
GO_REF:0000107 		RGD
Ensembl		 PMID:16714284 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:164,167,928...164,277,435 		JBrowse link
G Myo5a myosin VA IMP RGD PMID:29217155 RGD:42721980 NCBI chr 8:84,692,524...84,860,564
Ensembl chr 8:84,692,910...84,856,265 		JBrowse link
G Nbr1 NBR1, autophagy cargo receptor involved_in ISO
IBA
ISS 		(PMID:19250911)
GO_REF:0000033
GO_REF:0000024 		RGD
GO_Central
UniProt		 PMID:19250911 GO_REF:0000024 GO_REF:0000033 NCBI chr10:86,978,024...87,006,664
Ensembl chr10:86,977,885...87,007,012 		JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of ISO
IEA 		MGI:1857409|MGI:1891828 (PMID:17468177)
GO_REF:0000107 		RGD
Ensembl		 PMID:17468177 GO_REF:0000107 NCBI chr18:3,654,237...3,699,853
Ensembl chr18:3,654,237...3,699,800 		JBrowse link
G Pdcd6ip programmed cell death 6 interacting protein involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:25686249)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:25686249 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:122,469,223...122,524,993
Ensembl chr 8:122,469,223...122,524,993 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha acts_upstream_of_or_within ISO MGI:2685054 (PMID:24098492) RGD PMID:24098492 NCBI chr 1:180,012,248...180,117,786
Ensembl chr 1:180,012,248...180,117,773 		JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta acts_upstream_of_or_within ISO
IEA 		MGI:1203729 (PMID:24098492)
GO_REF:0000107 		RGD
Ensembl		 PMID:24098492 GO_REF:0000107 NCBI chr13:47,046,866...47,107,733
Ensembl chr13:47,047,127...47,107,725 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:23332761), (PMID:25578879) 		UniProt
Ensembl
RGD		 PMID:23332761 PMID:25578879 GO_REF:0000024 GO_REF:0000107 NCBI chr18:22,119,677...22,203,546
Ensembl chr18:22,119,792...22,203,539 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:115,146,660...115,195,326
Ensembl chr 8:115,146,687...115,195,326 		JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase acts_upstream_of ISO
IEA 		(PMID:17476689)
GO_REF:0000107 		RGD
Ensembl		 PMID:17476689 GO_REF:0000107 NCBI chr  X:17,289,509...17,294,778
Ensembl chr  X:17,289,509...17,294,778 		JBrowse link
G Plaa phospholipase A2, activating protein involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:27753622) 		UniProt
Ensembl
RGD		 PMID:27753622 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:114,544,327...114,576,023
Ensembl chr 5:114,544,325...114,576,109 		JBrowse link
G Rab2a RAB2A, member RAS oncogene family involved_in IEA
ISS
ISO 		GO_REF:0000107
GO_REF:0000024
(PMID:28063257)
(PMID:28483915) 		Ensembl
UniProt
RGD		 PMID:28063257 PMID:28483915 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:26,473,424...26,537,441
Ensembl chr 5:26,473,548...26,538,488 		JBrowse link
G Rab2b RAB2B, member RAS oncogene family involved_in ISO
IEA 		(PMID:28063257)
GO_REF:0000107 		RGD
Ensembl		 PMID:28063257 GO_REF:0000107 NCBI chr15:27,441,860...27,462,479
Ensembl chr15:27,442,816...27,462,479 		JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:99,288,984...99,362,817
Ensembl chr13:99,288,647...99,361,053 		JBrowse link
G Snf8 SNF8 subunit of ESCRT-II involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:38423010) 		UniProt
Ensembl
RGD		 PMID:38423010 GO_REF:0000024 GO_REF:0000107 NCBI chr10:81,481,054...81,493,430
Ensembl chr10:81,481,057...81,494,610 		JBrowse link
G Sqstm1 sequestosome 1 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:20168092), (PMID:22622177), (PMID:27498865)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:20168092 PMID:22622177 PMID:27498865 GO_REF:0000024 GO_REF:0000107 NCBI chr10:35,026,598...35,037,750
Ensembl chr10:35,026,598...35,037,750 		JBrowse link
G Stam signal transducing adaptor molecule involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr17:82,028,779...82,074,717
Ensembl chr17:82,028,703...82,075,013 		JBrowse link
G Stam2 signal transducing adaptor molecule 2 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 3:57,597,557...57,643,915
Ensembl chr 3:57,597,559...57,643,915 		JBrowse link
G Tbc1d5 TBC1 domain family, member 5 involved_in ISO (PMID:24603492) RGD PMID:24603492 NCBI chr 9:3,740,032...4,256,971
Ensembl chr 9:3,750,325...4,253,581 		JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO
IEA 		MGI:1856973 (PMID:23704209)
GO_REF:0000107 		RGD
Ensembl		 PMID:23704209 GO_REF:0000107 NCBI chr 1:210,556,270...210,568,021
Ensembl chr 1:210,556,270...210,568,033 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISO
IEA 		(PMID:25484072)
GO_REF:0000107 		RGD
Ensembl		 PMID:25484072 GO_REF:0000107 NCBI chr12:15,504,456...15,534,541
Ensembl chr12:15,505,343...15,534,116 		JBrowse link
G Tmem74 transmembrane protein 74 involved_in ISO (PMID:18294959) RGD PMID:18294959 NCBI chr 7:76,814,000...76,822,633
Ensembl chr 7:76,813,212...76,822,925 		JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:1931135|MGI:5637673 (PMID:24713655)
GO_REF:0000107 		RGD
Ensembl		 PMID:24713655 GO_REF:0000107 NCBI chr 3:164,341,618...164,350,270
Ensembl chr 3:164,343,205...164,350,225 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO
IEA 		(PMID:20529957)
GO_REF:0000107 		RGD
Ensembl		 PMID:20529957 GO_REF:0000107 NCBI chr17:6,438,456...6,482,498
Ensembl chr17:6,444,124...6,482,499 		JBrowse link
G Ubxn6 UBX domain protein 6 involved_in ISO
IEA 		(PMID:27753622)
GO_REF:0000107 		RGD
Ensembl		 PMID:27753622 GO_REF:0000107 NCBI chr 9:988,051...993,221
Ensembl chr 9:988,051...993,497 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:22354037)
GO_REF:0000107
UniProtKB:O70405 (PMID:21855797)
(PMID:21258367) 		RGD
Ensembl		 PMID:21258367 PMID:21855797 PMID:22354037 GO_REF:0000107 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:51,511,492...51,537,746 		JBrowse link
G Vcp valosin-containing protein involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:27753622) 		UniProt
Ensembl
RGD		 PMID:27753622 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:62,005,984...62,025,387
Ensembl chr 5:62,005,985...62,025,387 		JBrowse link
G Vps25 vacuolar protein sorting 25 homolog involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr10:86,696,330...86,701,871
Ensembl chr10:86,696,157...86,701,871 		JBrowse link
G Vps37b VPS37B subunit of ESCRT-I involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr12:38,220,973...38,249,935
Ensembl chr12:38,220,959...38,249,935 		JBrowse link
G Vps37c VPS37C subunit of ESCRT-I involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 1:216,760,675...216,787,198
Ensembl chr 1:216,761,612...216,787,203 		JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:50,758,732...50,923,129
Ensembl chr17:50,758,734...50,923,133 		JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:264,361,538...264,667,171
Ensembl chr 1:264,361,522...264,668,727 		JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:103,694,342...103,709,544
Ensembl chr 6:103,694,345...103,709,295 		JBrowse link
G Yod1 YOD1 deubiquitinase involved_in ISS
ISO 		GO_REF:0000024
(PMID:27753622) 		UniProt
RGD		 PMID:27753622 GO_REF:0000024 NCBI chr13:44,727,319...44,733,933 JBrowse link
G Zfyve1 zinc finger FYVE-type containing 1 involved_in ISO
IEA 		(PMID:25578879)
GO_REF:0000107 		RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr 6:108,916,062...108,965,231
Ensembl chr 6:108,916,062...108,965,160 		JBrowse link
microautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16-like 1 involved_in ISO
IEA 		(PMID:29317426), (PMID:33586810)
GO_REF:0000117
GO_REF:0000107
(PMID:33586810) 		RGD
UniProt
Ensembl		 PMID:29317426 PMID:33586810 GO_REF:0000107 GO_REF:0000117 NCBI chr 9:95,869,839...95,905,354
Ensembl chr 9:95,869,865...95,905,357 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IEA 		(PMID:33909989)
GO_REF:0000107 		RGD
Ensembl		 PMID:33909989 GO_REF:0000107 NCBI chr 9:101,729,772...101,761,456
Ensembl chr 9:101,726,782...101,761,622 		JBrowse link
G Zfp418 zinc finger protein 418 involved_in ISS
IEA
ISO
IMP 		GO_REF:0000024
GO_REF:0000117
(PMID:33249983) 		UniProt
RGD		 PMID:33249983 PMID:33249983 GO_REF:0000024 GO_REF:0000117, RGD:329955556 NCBI chr 1:75,614,531...75,627,367
Ensembl chr 1:75,614,581...75,627,362 		JBrowse link
mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001519.1 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117
G Abi2 abl-interactor 2 involved_in ISO (PMID:38081847) RGD PMID:38081847 NCBI chr 9:69,321,072...69,490,630
Ensembl chr 9:69,321,150...69,490,597 		JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO
IEA
IBA 		UniProtKB:O60260|UniProtKB:Q99MQ3 (PMID:21753002), (PMID:25215947)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:21753002 PMID:25215947 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:98,156,626...98,345,876
Ensembl chr 3:98,156,652...98,345,872 		JBrowse link
G Arfip2 ARF interacting protein 2 involved_in ISO
IEA
ISS 		(PMID:33773106)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:33773106 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:169,387,484...169,392,290
Ensembl chr 1:169,387,485...169,392,166 		JBrowse link
G Arhgap26 Rho GTPase activating protein 26 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:38081847)
GO_REF:0000107 		RGD
Ensembl		 PMID:38081847 GO_REF:0000107 NCBI chr18:30,702,602...31,489,047
Ensembl chr18:31,089,787...31,489,047 		JBrowse link
G Atg10 autophagy related 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:23,843,695...24,133,459
Ensembl chr 2:23,844,482...24,133,368 		JBrowse link
G Atg13 autophagy related 13 involved_in IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:21855797) 		GO_Central
Ensembl
RGD		 PMID:21855797 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:98,102,831...98,136,741
Ensembl chr 3:98,101,552...98,136,743 		JBrowse link
G Atg14 autophagy related 14 involved_in ISO
IEA
IBA 		(PMID:23878393)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:23878393 GO_REF:0000033 GO_REF:0000107 NCBI chr15:23,275,457...23,306,817
Ensembl chr15:23,275,457...23,306,815 		JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:109,453,712...109,553,758
Ensembl chr  X:109,453,689...109,553,760 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IBA
IEA 		(PMID:33773106)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:33773106 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:101,729,772...101,761,456
Ensembl chr 9:101,726,782...101,761,622 		JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:118,977,594...119,050,894
Ensembl chr 5:118,982,918...119,052,695 		JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO
IEA
IBA 		(PMID:33773106)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:33773106 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:28,083,902...28,093,491
Ensembl chr 8:28,083,936...28,093,491 		JBrowse link
G Atg5 autophagy related 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:49,380,813...49,471,821 		JBrowse link
G Atg7 autophagy related 7 involved_in IEA
IBA
ISO 		GO_REF:0000107
GO_REF:0000033
(PMID:20080761)
UniProtKB:Q9BXM7 (PMID:19279012) 		Ensembl
GO_Central
RGD		 PMID:19279012 PMID:20080761 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:149,391,390...149,598,319 		JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:84,126,071...84,136,666 		JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:11,678,548...11,686,097
Ensembl chr 4:11,678,299...11,686,079 		JBrowse link
G Bcl2l13 Bcl2-like 13 acts_upstream_of_or_within ISO
IEA 		(PMID:31266807)
GO_REF:0000107 		RGD
Ensembl		 PMID:31266807 GO_REF:0000107 NCBI chr 4:155,728,284...155,785,058
Ensembl chr 4:155,728,284...155,781,158 		JBrowse link
G Becn1 beclin 1 involved_in ISO
IEA
IBA 		(PMID:23878393), (PMID:25215947)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:23878393 PMID:25215947 GO_REF:0000033 GO_REF:0000107 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,731,650...86,747,002 		JBrowse link
G Becn2 beclin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:90,375,186...90,424,533
Ensembl chr13:90,375,186...90,378,488 		JBrowse link
G Bnip3 BCL2 interacting protein 3 involved_in ISO
IEA 		(PMID:22505714)
GO_REF:0000107 		RGD
Ensembl		 PMID:22505714 GO_REF:0000107 NCBI chr 1:203,137,778...203,154,962
Ensembl chr 1:203,137,778...203,154,962 		JBrowse link
G Clec16a C-type lectin domain containing 16A involved_in ISO
IEA 		(PMID:35604110)
GO_REF:0000107 		RGD
Ensembl		 PMID:35604110 GO_REF:0000107 NCBI chr10:5,434,725...5,631,246
Ensembl chr10:5,434,725...5,630,619 		JBrowse link
G Ctsk cathepsin K involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr 2:185,747,548...185,758,512
Ensembl chr 2:185,747,165...185,765,582 		JBrowse link
G Dele1 DAP3 binding cell death enhancer 1 acts_upstream_of_or_within ISO (PMID:38340717) RGD PMID:38340717 NCBI chr18:30,325,369...30,349,285
Ensembl chr18:30,336,308...30,349,938 		JBrowse link
G Eif2ak1 eukaryotic translation initiation factor 2 alpha kinase 1 acts_upstream_of_or_within ISO (PMID:38340717) RGD PMID:38340717 NCBI chr12:15,824,431...15,858,266
Ensembl chr12:15,825,124...15,858,281 		JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha involved_in ISO
IEA
ISS 		(PMID:38340717)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:38340717 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:103,405,880...103,430,549
Ensembl chr 6:103,405,788...103,431,649 		JBrowse link
G Fbxl4 F-box and leucine-rich repeat protein 4 acts_upstream_of_or_within ISO (PMID:22505714) RGD PMID:22505714 NCBI chr 5:40,752,513...40,826,154
Ensembl chr 5:40,752,521...40,850,826 		JBrowse link
G Fundc1 FUN14 domain containing 1 involved_in ISO
IEA 		UniProtKB:P09936 (PMID:34244144)
GO_REF:0000107 		RGD
Ensembl		 PMID:34244144 GO_REF:0000107 NCBI chr  X:7,666,787...7,683,443
Ensembl chr  X:7,666,759...7,683,441 		JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:55,213,465...55,216,787
Ensembl chr10:55,212,075...55,216,154 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:164,666,332...164,675,474
Ensembl chr 4:164,666,246...164,674,578 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:56,819,826...56,830,662
Ensembl chr19:56,819,791...56,830,660 		JBrowse link
G Gabarapl3 GABA type A receptor associated protein like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:98,126,056...98,127,013 JBrowse link
G Gabarapl4 gamma-aminobutyric acid receptor associated protein like 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:71,949,837...71,950,435 JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO
IEA 		(PMID:23707074)
GO_REF:0000107 		RGD
Ensembl		 PMID:23707074 GO_REF:0000107 NCBI chr 2:176,902,141...176,916,015
Ensembl chr 2:176,907,154...176,916,985 		JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) RGD PMID:33773106 NCBI chr 2:173,919,330...174,500,536
Ensembl chr 2:173,921,747...174,500,527 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:164,243,204...164,244,850
Ensembl chr 3:164,243,093...164,244,850 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISS
IBA
ISO 		GO_REF:0000024
GO_REF:0000033
UniProtKB:Q9BXM7 (PMID:19279012), (PMID:28017329) 		UniProt
GO_Central
RGD		 PMID:19279012 PMID:28017329 GO_REF:0000024 GO_REF:0000033 NCBI chr19:66,571,631...66,582,270
Ensembl chr19:66,574,407...66,584,358
Ensembl chr16:66,574,407...66,584,358 		JBrowse link
G Nipsnap1 nipsnap homolog 1 involved_in ISO
IEA 		(PMID:30982665)
GO_REF:0000107
GO_REF:0000117 		RGD
Ensembl
UniProt		 PMID:30982665 GO_REF:0000107 GO_REF:0000117 NCBI chr14:83,957,714...83,981,579
Ensembl chr14:83,957,702...83,981,576 		JBrowse link
G Nipsnap2 nipsnap homolog 2 involved_in ISO
IEA 		(PMID:30982665)
GO_REF:0000107
GO_REF:0000117 		RGD
Ensembl
UniProt		 PMID:30982665 GO_REF:0000107 GO_REF:0000117 NCBI chr12:32,542,171...32,580,345
Ensembl chr12:32,547,819...32,580,303 		JBrowse link
G Nipsnap3a nipsnap homolog 3A (C. elegans) involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 5:72,409,365...72,420,441
Ensembl chr 5:72,409,402...72,420,077 		JBrowse link
G Nipsnap3b nipsnap homolog 3B involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 5:72,446,945...72,465,090
Ensembl chr 5:72,432,957...72,465,544 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA
ISO 		GO_REF:0000107
(PMID:33406421) 		Ensembl
RGD		 PMID:33406421 GO_REF:0000107 NCBI chr  X:70,811,317...70,856,123
Ensembl chr  X:70,811,319...70,856,123 		JBrowse link
G Oma1 OMA1 zinc metallopeptidase acts_upstream_of_or_within ISO (PMID:38340717) RGD PMID:38340717 NCBI chr 5:123,312,038...123,455,540
Ensembl chr 5:123,312,766...123,366,005 		JBrowse link
G Phb2 prohibitin 2 involved_in ISO
IEA
ISS 		(PMID:28017329)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:28017329 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:159,203,948...159,208,561
Ensembl chr 4:159,203,926...159,209,231 		JBrowse link
G Pink1 PTEN induced kinase 1 acts_upstream_of_or_within
involved_in 		IMP
ISO
IEA 		(PMID:38081847)
GO_REF:0000107
UniProtKB:Q8CGY8 (PMID:33406421), (PMID:38081847) 		RGD
Ensembl		 PMID:33406421 PMID:38081847 PMID:25154397 GO_REF:0000107, RGD:12904014 NCBI chr 5:155,813,838...155,825,950
Ensembl chr 5:155,813,838...155,825,950 		JBrowse link
G Pptc7 protein phosphatase targeting COQ7 acts_upstream_of_or_within ISO (PMID:22505714) RGD PMID:22505714 NCBI chr12:39,910,728...39,949,101
Ensembl chr12:39,910,742...39,949,101 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within 		IDA
IEA
IBA
ISO 		PMID:20457763
GO_REF:0000117
GO_REF:0000107
GO_REF:0000033
(PMID:23685073), (PMID:28017329)
MGI:1921624 (PMID:24949970) 		UniProt
Ensembl
GO_Central
RGD		 PMID:23685073 PMID:24949970 PMID:28017329 PMID:20457763 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117, RGD:10047224 NCBI chr 1:51,236,410...52,430,242
Ensembl chr 1:51,210,330...52,430,304 		JBrowse link
G Rbx1 ring-box 1 acts_upstream_of_or_within ISO (PMID:22505714) RGD PMID:22505714 NCBI chr 7:114,870,893...114,881,194
Ensembl chr 7:114,870,972...114,881,191 		JBrowse link
G Retreg1 reticulophagy regulator 1 acts_upstream_of_or_within ISO (PMID:31446166) RGD PMID:31446166 NCBI chr 2:78,045,435...78,205,316
Ensembl chr 2:78,066,031...78,225,356 		JBrowse link
G Rimoc1 RAB7A interacting MON1-CCZ1 complex subunit 1 involved_in ISO
IEA 		(PMID:34432599)
GO_REF:0000107
GO_REF:0000002 		RGD
Ensembl
InterPro		 PMID:34432599 GO_REF:0000002 GO_REF:0000107 NCBI chr 2:54,917,383...54,931,577
Ensembl chr 2:54,917,383...54,931,874 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:79,478,804...79,608,118
Ensembl chr 5:79,478,912...79,607,052 		JBrowse link
G Snx7 sorting nexin 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:208,528,041...208,612,597
Ensembl chr 2:208,528,049...208,613,075 		JBrowse link
G Spata33 spermatogenesis associated 33 involved_in ISO (PMID:33087875) RGD PMID:33087875 NCBI chr19:68,155,033...68,167,415
Ensembl chr19:68,155,326...68,167,262 		JBrowse link
G Sqstm1 sequestosome 1 involved_in ISO
IEA
IBA 		UniProtKB:Q9JK66 (PMID:20457763)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:20457763 GO_REF:0000033 GO_REF:0000107 NCBI chr10:35,026,598...35,037,750
Ensembl chr10:35,026,598...35,037,750 		JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase acts_upstream_of ISO
IEA 		MGI:5319187 (PMID:22044588)
GO_REF:0000107 		RGD
Ensembl		 PMID:22044588 GO_REF:0000107 NCBI chr 4:161,613,306...161,632,248
Ensembl chr 4:161,613,306...161,632,229 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of ISO
IEA 		MGI:1857263 (PMID:22044588)
GO_REF:0000107 		RGD
Ensembl		 PMID:22044588 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,798,851...54,810,299 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO
IBA 		(PMID:21855797)
GO_REF:0000033 		RGD
GO_Central		 PMID:21855797 GO_REF:0000033 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:51,511,492...51,537,746 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:46,951,038...47,029,844
Ensembl chr10:46,951,038...47,029,844 		JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:66,888,820...66,895,380
Ensembl chr 8:66,888,788...66,895,379 		JBrowse link
mitophagy by internal vacuole formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata18 spermatogenesis associated 18 involved_in ISO
IBA
IEA 		(PMID:21264228)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:21264228 GO_REF:0000033 GO_REF:0000107 NCBI chr14:34,885,995...34,912,704
Ensembl chr14:34,885,995...34,912,736 		JBrowse link
negative regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac6 histone deacetylase 6 involved_in ISO
IEA 		(PMID:31857589)
GO_REF:0000107 		RGD
Ensembl		 PMID:31857589 GO_REF:0000107 NCBI chr  X:17,222,538...17,244,373
Ensembl chr  X:17,222,856...17,244,370 		JBrowse link
G Lypla1 lysophospholipase 1 involved_in ISO
IEA 		(PMID:37802024)
GO_REF:0000107 		RGD
Ensembl		 PMID:37802024 GO_REF:0000107 NCBI chr 5:19,477,408...19,506,568
Ensembl chr 5:19,477,409...19,506,522 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 acts_upstream_of_or_within ISO
IEA 		MGI:2683833 (PMID:27994061)
GO_REF:0000107 		RGD
Ensembl		 PMID:27994061 GO_REF:0000107 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,731,650...86,747,002 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (PMID:23918802) RGD PMID:23918802 NCBI chr20:3,924,263...3,941,238
Ensembl chr20:3,924,263...3,941,384 		JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in ISO
IEA
ISS 		(PMID:25495476)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
GO_Central		 PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:44,733,288...44,778,519
Ensembl chr 8:44,733,300...44,784,097 		JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:25495476) 		GO_Central
Ensembl
RGD		 PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:22,406,685...22,446,745
Ensembl chr 6:22,406,632...22,447,041 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO
IEA 		(PMID:23916833)
GO_REF:0000107 		RGD
Ensembl		 PMID:23916833 GO_REF:0000107 NCBI chr 7:124,706,246...124,867,234
Ensembl chr 7:124,706,080...124,867,239 		JBrowse link
G Mtm1 myotubularin 1 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2450997 (PMID:23695157) 		GO_Central
RGD		 PMID:23695157 GO_REF:0000033 NCBI chr 6:6,234,917...6,252,874
Ensembl chr 6:6,234,922...6,252,961 		JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:20181828) 		UniProt
Ensembl
RGD		 PMID:20181828 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:190,643,866...190,645,901
Ensembl chr 1:190,643,867...190,645,901 		JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO
IBA
IEA
ISS 		(PMID:25484098)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024 		RGD
GO_Central
Ensembl		 PMID:25484098 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:55,217,351...55,221,471
Ensembl chr10:55,217,351...55,221,471 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO
IEA 		(PMID:19279012)
GO_REF:0000107 		RGD
Ensembl		 PMID:19279012 GO_REF:0000107 NCBI chr 5:155,813,838...155,825,950
Ensembl chr 5:155,813,838...155,825,950 		JBrowse link
G Scfd1 sec1 family domain containing 1 involved_in ISO
IEA 		(PMID:21242315)
GO_REF:0000107 		RGD
Ensembl		 PMID:21242315 GO_REF:0000107 NCBI chr 6:74,531,225...74,609,463
Ensembl chr 6:74,531,276...74,633,750 		JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 2:188,188,783...188,209,565
Ensembl chr 2:188,188,751...188,211,600 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO
IEA 		(PMID:28195531)
GO_REF:0000107 		RGD
Ensembl		 PMID:28195531 GO_REF:0000107 NCBI chr10:45,957,146...45,968,388
Ensembl chr10:45,957,104...45,968,389 		JBrowse link
G Tmem39a transmembrane protein 39a involved_in ISO
IEA
IBA
ISS 		(PMID:31806350)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024 		RGD
Ensembl
GO_Central
UniProt		 PMID:31806350 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr11:75,666,154...75,695,486
Ensembl chr11:75,666,154...75,695,486 		JBrowse link
negative regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A involved_in ISO
IEA 		(PMID:28223137)
GO_REF:0000107 		RGD
Ensembl		 PMID:28223137 GO_REF:0000107 NCBI chr10:5,434,725...5,631,246
Ensembl chr10:5,434,725...5,630,619 		JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO
IBA
IEA
ISS 		(PMID:25484098)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024 		RGD
GO_Central
Ensembl		 PMID:25484098 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:55,217,351...55,221,471
Ensembl chr10:55,217,351...55,221,471 		JBrowse link
G Rubcn rubicon autophagy regulator involved_in ISO
IBA 		(PMID:21062745)
GO_REF:0000033 		RGD
GO_Central		 PMID:21062745 GO_REF:0000033 NCBI chr11:81,420,261...81,469,415
Ensembl chr11:81,412,617...81,469,424 		JBrowse link
G Tmem39a transmembrane protein 39a involved_in ISO
IEA
IBA
ISS 		(PMID:31806350)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024 		RGD
Ensembl
GO_Central
UniProt		 PMID:31806350 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr11:75,666,154...75,695,486
Ensembl chr11:75,666,154...75,695,486 		JBrowse link
G Ubqln4 ubiquilin 4 involved_in ISO
IEA 		(PMID:23459205)
GO_REF:0000107 		RGD
Ensembl		 PMID:23459205 GO_REF:0000107 NCBI chr 2:176,310,524...176,325,724
Ensembl chr 2:176,310,568...176,325,924 		JBrowse link
negative regulation of autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adra1a adrenoceptor alpha 1A acts_upstream_of_or_within ISO (PMID:27994061) RGD PMID:27994061 NCBI chr15:45,005,648...45,111,416
Ensembl chr15:45,005,799...45,102,534 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 involved_in ISO
IEA 		(PMID:18387192)
GO_REF:0000107 		RGD
Ensembl		 PMID:18387192 GO_REF:0000107 NCBI chr 6:137,534,810...137,555,131
Ensembl chr 6:137,535,390...137,552,610 		JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in ISO
ISS 		(PMID:21358617)
(PMID:36812915)
GO_REF:0000024 		RGD
UniProt		 PMID:21358617 PMID:36812915 GO_REF:0000024 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:23,204,464...23,366,900 		JBrowse link
G Becn1 beclin 1 acts_upstream_of_or_within ISO
IEA 		(PMID:27994061)
GO_REF:0000107 		RGD
Ensembl		 PMID:27994061 GO_REF:0000107 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,731,650...86,747,002 		JBrowse link
G Bmf Bcl2 modifying factor involved_in ISO
IBA 		(PMID:23629966)
GO_REF:0000033 		RGD
GO_Central		 PMID:23629966 GO_REF:0000033 NCBI chr 3:125,953,466...125,974,087
Ensembl chr 3:125,953,466...125,974,258 		JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (PMID:32561715) RGD PMID:32561715 NCBI chr 1:254,159,085...254,324,819
Ensembl chr 1:254,159,124...254,328,357 		JBrowse link
G Chuk component of inhibitor of nuclear factor kappa B kinase complex acts_upstream_of_or_within ISO (PMID:36812915) RGD PMID:36812915 NCBI chr 1:252,908,748...252,944,273
Ensembl chr 1:252,908,749...252,944,273 		JBrowse link
G Cptp ceramide-1-phosphate transfer protein involved_in ISS
ISO 		GO_REF:0000024
(PMID:29164996) 		UniProt
RGD		 PMID:29164996 GO_REF:0000024 NCBI chr 5:171,757,181...171,761,271
Ensembl chr 5:171,757,181...171,761,266 		JBrowse link
G Csnk1a1 casein kinase 1, alpha 1 acts_upstream_of_or_within ISO (PMID:32561715) RGD PMID:32561715 NCBI chr18:57,285,156...57,320,540
Ensembl chr18:57,287,412...57,320,538 		JBrowse link
G Cul1 cullin 1 acts_upstream_of_or_within ISO (PMID:32561715) RGD PMID:32561715 NCBI chr 4:77,551,781...77,634,210
Ensembl chr 4:77,551,787...77,621,760 		JBrowse link
G Dap death-associated protein involved_in ISO
IEA
IBA 		(PMID:20537536)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:20537536 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:83,910,113...83,962,673
Ensembl chr 2:83,910,060...83,962,673 		JBrowse link
G Dapl1 death associated protein-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:64,369,734...64,389,677
Ensembl chr 3:64,369,546...64,389,677 		JBrowse link
G Deptor DEP domain containing MTOR-interacting protein acts_upstream_of_or_within ISO (PMID:32561715) RGD PMID:32561715 NCBI chr 7:88,404,745...88,574,065
Ensembl chr 7:88,404,620...88,574,041 		JBrowse link
G Eif4e eukaryotic translation initiation factor 4E NOT|involved_in ISO (PMID:18426977) RGD PMID:18426977 NCBI chr 2:229,736,309...229,772,628
Ensembl chr 2:229,739,897...229,774,105 		JBrowse link
G Eif4g1 eukaryotic translation initiation factor 4 gamma 1 involved_in ISO (PMID:18426977) RGD PMID:18426977 NCBI chr11:93,726,322...93,746,387
Ensembl chr11:93,726,322...93,746,367 		JBrowse link
G Eif4g2 eukaryotic translation initiation factor 4, gamma 2 involved_in ISO (PMID:18426977) RGD PMID:18426977 NCBI chr 1:174,616,102...174,628,252
Ensembl chr 1:174,616,103...174,628,252 		JBrowse link
G Eif4g3 eukaryotic translation initiation factor 4 gamma, 3 NOT|involved_in ISO (PMID:18426977) RGD PMID:18426977 NCBI chr 5:155,481,378...155,702,194
Ensembl chr 5:155,481,378...155,702,194 		JBrowse link
G Ep300 E1A binding protein p300 involved_in
acts_upstream_of_or_within 		ISO (PMID:32561715) RGD PMID:32561715 NCBI chr 7:114,987,857...115,058,652
Ensembl chr 7:114,946,982...115,058,574 		JBrowse link
G Erfe erythroferrone involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:24187137) 		UniProt
Ensembl
RGD		 PMID:24187137 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:99,404,512...99,412,383
Ensembl chr 9:99,404,514...99,412,383 		JBrowse link
G Fn1 fibronectin 1 acts_upstream_of_or_within ISO (PMID:36812915) RGD PMID:36812915 NCBI chr 9:80,645,507...80,714,200
Ensembl chr 9:80,645,507...80,714,137 		JBrowse link
G Foxk1 forkhead box K1 involved_in ISO
IEA 		(PMID:25402684)
GO_REF:0000107 		RGD
Ensembl		 PMID:25402684 GO_REF:0000107 NCBI chr12:17,223,599...17,288,564
Ensembl chr12:17,229,430...17,288,564 		JBrowse link
G Foxk2 forkhead box K2 involved_in ISO (PMID:25402684) RGD PMID:25402684 NCBI chr10:107,040,933...107,090,860
Ensembl chr10:107,040,933...107,195,823 		JBrowse link
G Gata4 GATA binding protein 4 IMP RGD PMID:19901028 RGD:5131537 NCBI chr15:41,635,572...41,707,252
Ensembl chr15:41,635,572...41,681,609 		JBrowse link
G Golga2 golgin A2 involved_in ISO (PMID:22735382) RGD PMID:22735382 NCBI chr 3:35,981,783...36,002,023
Ensembl chr 3:35,981,499...36,002,022 		JBrowse link
G Herc1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 acts_upstream_of_or_within ISO
IEA 		MGI:3613033 (PMID:20041218)
GO_REF:0000107 		RGD
Ensembl		 PMID:20041218 GO_REF:0000107 NCBI chr 8:75,796,347...75,965,347
Ensembl chr 8:75,796,357...75,965,347 		JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta acts_upstream_of_or_within ISO (PMID:36812915) RGD PMID:36812915 NCBI chr16:76,021,968...76,075,717
Ensembl chr16:76,022,008...76,081,911 		JBrowse link
G Il10 interleukin 10 involved_in ISO
IEA 		(PMID:26962683)
GO_REF:0000107 		RGD
Ensembl		 PMID:26962683 GO_REF:0000107 NCBI chr13:45,024,921...45,029,586
Ensembl chr13:45,025,087...45,029,580 		JBrowse link
G Il10ra interleukin 10 receptor subunit alpha involved_in ISO
IEA 		(PMID:26962683)
GO_REF:0000107 		RGD
Ensembl		 PMID:26962683 GO_REF:0000107 NCBI chr 8:54,459,754...54,474,786
Ensembl chr 8:54,459,882...54,475,028 		JBrowse link
G Il3 interleukin 3 acts_upstream_of_or_within ISO (PMID:15680329) RGD PMID:15680329 NCBI chr10:38,906,460...38,908,810
Ensembl chr10:38,906,460...38,908,810 		JBrowse link
G Itga5 integrin subunit alpha 5 acts_upstream_of_or_within ISO (PMID:36812915) RGD PMID:36812915 NCBI chr 7:136,358,097...136,381,305
Ensembl chr 7:136,358,097...136,381,305 		JBrowse link
G Itgb1 integrin subunit beta 1 acts_upstream_of_or_within ISO (PMID:36812915) RGD PMID:36812915 NCBI chr19:73,602,277...73,650,271
Ensembl chr19:73,602,126...73,650,269 		JBrowse link
G Kdm4a lysine demethylase 4A involved_in ISO (PMID:25660547) RGD PMID:25660547 NCBI chr 5:136,958,178...137,004,942
Ensembl chr 5:136,958,178...137,004,951 		JBrowse link
G Klhl22 kelch-like family member 22 involved_in ISS
ISO 		GO_REF:0000024
(PMID:29769719) 		UniProt
RGD		 PMID:29769719 GO_REF:0000024 NCBI chr11:96,695,168...96,736,079
Ensembl chr11:96,695,171...96,738,065 		JBrowse link
G Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 acts_upstream_of_or_within ISO (PMID:32561715) RGD PMID:32561715 NCBI chr 1:165,684,001...165,689,698
Ensembl chr 1:165,684,091...165,703,178 		JBrowse link
G Lep leptin involved_in ISO
IEA
ISS 		(PMID:25060689)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:25060689 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:58,626,529...58,640,663
Ensembl chr 4:58,626,523...58,640,661 		JBrowse link
G Lepr leptin receptor involved_in ISO
IEA
ISS 		(PMID:25060689)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:25060689 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:121,409,735...121,593,201
Ensembl chr 5:121,474,099...121,591,215 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO (PMID:32561715) RGD PMID:32561715 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:190,797,185...190,803,411 		JBrowse link
G Mapk8 mitogen-activated protein kinase 8 acts_upstream_of_or_within ISO (PMID:36812915) RGD PMID:36812915 NCBI chr16:8,645,171...8,728,225
Ensembl chr16:8,645,198...8,728,427 		JBrowse link
G Mcl1 MCL1 apoptosis regulator, BCL2 family member involved_in ISO (PMID:24113155) RGD PMID:24113155 NCBI chr 2:185,884,840...185,912,532
Ensembl chr 2:185,908,168...185,938,782 		JBrowse link
G Mir223 microRNA 223 IDA RGD PMID:29608885 RGD:21408565 NCBI chr  X:65,151,383...65,151,492
Ensembl chr  X:65,151,383...65,151,492 		JBrowse link
G Mtmr9 myotubularin related protein 9 involved_in ISO
IEA 		UniProtKB:Q96EF0-1 (PMID:22647598)
GO_REF:0000107 		RGD
Ensembl		 PMID:22647598 GO_REF:0000107 NCBI chr15:41,945,102...41,967,136
Ensembl chr15:41,945,105...41,967,136 		JBrowse link
G Mtor mechanistic target of rapamycin kinase acts_upstream_of_or_within
involved_in 		IMP
ISO
IEA
ISS 		(PMID:32561715)
GO_REF:0000107
(PMID:21258367)
GO_REF:0000117
(PMID:22424946), (PMID:22576015), (PMID:30704899), (PMID:32561715)
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:21258367 PMID:22424946 PMID:22576015 PMID:30704899 PMID:32561715 More... GO_REF:0000024 GO_REF:0000107 GO_REF:0000117, RGD:10040964 NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:164,167,928...164,277,435 		JBrowse link
G Nampt nicotinamide phosphoribosyltransferase IMP RGD PMID:26601421 RGD:13781888 NCBI chr 6:55,152,756...55,189,547
Ensembl chr 6:55,151,926...55,189,544 		JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISS
IEA
ISO
IMP 		GO_REF:0000024
GO_REF:0000107
(PMID:20181828) 		UniProt
Ensembl
RGD		 PMID:20181828 PMID:20181828 GO_REF:0000024 GO_REF:0000107, RGD:14390062 NCBI chr 1:190,643,866...190,645,901
Ensembl chr 1:190,643,867...190,645,901 		JBrowse link
G Ptk2 protein tyrosine kinase 2 acts_upstream_of_or_within ISO (PMID:27994061) RGD PMID:27994061 NCBI chr 7:107,015,730...107,220,865
Ensembl chr 7:107,015,733...107,172,091 		JBrowse link
G Ptpn22 protein tyrosine phosphatase, non-receptor type 22 involved_in ISO (PMID:23991106) RGD PMID:23991106 NCBI chr 2:194,055,165...194,103,209
Ensembl chr 2:194,045,746...194,103,209 		JBrowse link
G Rasip1 Ras interacting protein 1 involved_in ISO
IEA 		(PMID:22354037)
GO_REF:0000107 		RGD
Ensembl		 PMID:22354037 GO_REF:0000107 NCBI chr 1:105,233,599...105,246,028
Ensembl chr 1:105,233,599...105,246,028 		JBrowse link
G Rbx1 ring-box 1 acts_upstream_of_or_within ISO (PMID:32561715) RGD PMID:32561715 NCBI chr 7:114,870,893...114,881,194
Ensembl chr 7:114,870,972...114,881,191 		JBrowse link
G Rheb Ras homolog, mTORC1 binding acts_upstream_of_or_within ISO (PMID:32561715) RGD PMID:32561715 NCBI chr 4:11,012,173...11,053,860
Ensembl chr 4:11,012,643...11,053,931 		JBrowse link
G Rnf5 ring finger protein 5 acts_upstream_of_or_within ISO
IEA 		MGI:3775796 (PMID:23093945)
GO_REF:0000107 		RGD
Ensembl		 PMID:23093945 GO_REF:0000107 NCBI chr20:4,150,032...4,152,593
Ensembl chr20:4,150,138...4,152,591 		JBrowse link
G Rps6kb1 ribosomal protein S6 kinase B1 acts_upstream_of_or_within ISO (PMID:32561715) RGD PMID:32561715 NCBI chr10:71,817,794...71,865,211
Ensembl chr10:71,815,614...71,865,238 		JBrowse link
G Rptor regulatory associated protein of MTOR, complex 1 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:32561715)
GO_REF:0000107 		RGD
Ensembl		 PMID:32561715 GO_REF:0000107 NCBI chr10:105,376,943...105,675,416
Ensembl chr10:105,376,943...105,675,413 		JBrowse link
G Rraga Ras-related GTP binding A involved_in
acts_upstream_of_or_within 		ISO
IBA
IEA
ISS 		(PMID:25936802)
(PMID:32561715)
(PMID:23263183)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024 		RGD
GO_Central
Ensembl
UniProt		 PMID:23263183 PMID:25936802 PMID:32561715 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:106,159,335...106,160,930
Ensembl chr 5:106,158,853...106,160,504 		JBrowse link
G Rragb Ras-related GTP binding B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:21,560,313...21,610,550
Ensembl chr  X:21,560,361...21,610,346 		JBrowse link
G Rragc Ras-related GTP binding C involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
(PMID:32561715) 		GO_Central
RGD		 PMID:32561715 GO_REF:0000033 NCBI chr 5:141,433,014...141,452,546
Ensembl chr 5:141,433,040...141,452,548 		JBrowse link
G Rragd Ras-related GTP binding D involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:52,170,234...52,205,700
Ensembl chr 5:52,169,783...52,209,000 		JBrowse link
G Rubcn rubicon autophagy regulator involved_in ISO (PMID:19270696) RGD PMID:19270696 NCBI chr11:81,420,261...81,469,415
Ensembl chr11:81,412,617...81,469,424 		JBrowse link
G Sirt2 sirtuin 2 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:20543840) 		UniProt
Ensembl
RGD		 PMID:20543840 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:93,181,472...93,204,499
Ensembl chr 1:93,181,224...93,204,499 		JBrowse link
G Slc7a5 solute carrier family 7 member 5 IMP RGD PMID:25049270 RGD:151361107 NCBI chr19:66,843,808...66,872,412
Ensembl chr19:66,843,808...66,872,412 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO
IEA 		(PMID:26962683)
GO_REF:0000107 		RGD
Ensembl		 PMID:26962683 GO_REF:0000107 NCBI chr10:86,311,528...86,363,513
Ensembl chr10:86,311,535...86,363,359 		JBrowse link
G Stk38l serine/threonine kinase 38 like involved_in
acts_upstream_of_or_within 		ISO (PMID:35670107) RGD PMID:35670107 NCBI chr 4:181,346,969...181,423,844
Ensembl chr 4:181,364,919...181,423,840 		JBrowse link
G Syk spleen associated tyrosine kinase acts_upstream_of_or_within ISO (PMID:32561715) RGD PMID:32561715 NCBI chr17:12,756,493...12,830,927
Ensembl chr17:12,756,493...12,813,278 		JBrowse link
G Tbc1d14 TBC1 domain family, member 14 involved_in IEA
ISO 		GO_REF:0000107
(PMID:22613832) 		Ensembl
RGD		 PMID:22613832 GO_REF:0000107 NCBI chr14:78,397,345...78,496,863
Ensembl chr14:78,397,355...78,496,865 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO UniProtKB:P05067|UniProtKB:P49768 (PMID:28802038) RGD PMID:28802038 NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:20,144,334...20,151,779 		JBrowse link
G Trim27 tripartite motif-containing 27 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:35670107)
GO_REF:0000107 		RGD
Ensembl		 PMID:35670107 GO_REF:0000107 NCBI chr17:48,233,999...48,246,348
Ensembl chr17:48,234,002...48,246,348 		JBrowse link
G Usp7 ubiquitin specific peptidase 7 acts_upstream_of_or_within ISO (PMID:32561715) RGD PMID:32561715 NCBI chr10:7,335,508...7,432,018
Ensembl chr10:7,367,604...7,432,013 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor involved_in ISO (PMID:30902965) RGD PMID:30902965 NCBI chr 4:148,328,099...148,334,992
Ensembl chr 4:148,328,079...148,334,991 		JBrowse link
G Washc1 WASH complex subunit 1 involved_in ISO
IEA 		(PMID:23974797)
GO_REF:0000107 		RGD
Ensembl		 PMID:23974797 GO_REF:0000107 NCBI chr 9:113,169,730...113,179,829
Ensembl chr 9:113,168,259...113,179,835 		JBrowse link
G Wdr6 WD repeat domain 6 involved_in ISO
IEA 		(PMID:22354037)
GO_REF:0000107 		RGD
Ensembl		 PMID:22354037 GO_REF:0000107 NCBI chr 8:118,146,608...118,153,024
Ensembl chr 8:118,146,608...118,153,092 		JBrowse link
G Wnk1 WNK lysine deficient protein kinase 1 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:27911840)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:27911840 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:154,800,590...154,926,147
Ensembl chr 4:154,800,590...154,926,147 		JBrowse link
G Zkscan3 zinc finger with KRAB and SCAN domains 3 involved_in ISO (PMID:23434374) RGD PMID:23434374 NCBI chr17:47,912,816...47,928,553
Ensembl chr17:47,912,912...47,928,551 		JBrowse link
negative regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsa cathepsin A involved_in ISO
IEA 		UniProtKB:P10619 (PMID:12505983)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:12505983 GO_REF:0000107 GO_REF:0000117 NCBI chr 3:173,988,443...173,994,320
Ensembl chr 3:173,988,460...173,995,539 		JBrowse link
G Snca synuclein alpha involved_in ISO
IEA 		(PMID:20697033)
GO_REF:0000107 		RGD
Ensembl		 PMID:20697033 GO_REF:0000107 NCBI chr 4:91,026,474...91,127,444
Ensembl chr 4:91,026,474...91,126,315 		JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 involved_in ISO (PMID:25719862) RGD PMID:25719862 NCBI chr 1:104,992,518...105,012,851
Ensembl chr 1:104,992,442...105,012,851 		JBrowse link
negative regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmox1 heme oxygenase 1 acts_upstream_of_or_within ISO
IEA 		MGI:2429784 (PMID:20705711)
GO_REF:0000107 		RGD
Ensembl		 PMID:20705711 GO_REF:0000107 NCBI chr19:13,452,365...13,479,823
Ensembl chr19:13,472,884...13,479,818 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO
IEA 		(PMID:19640926)
GO_REF:0000107 		RGD
Ensembl		 PMID:19640926 GO_REF:0000107 NCBI chr 7:124,706,246...124,867,234
Ensembl chr 7:124,706,080...124,867,239 		JBrowse link
G Lzts1 leucine zipper tumor suppressor 1 involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr16:25,309,502...25,364,942
Ensembl chr16:25,309,507...25,364,940 		JBrowse link
G Mtor mechanistic target of rapamycin kinase acts_upstream_of_or_within
involved_in 		ISO
IEA
IBA 		(PMID:25327288)
GO_REF:0000107
(PMID:16714284), (PMID:23274896)
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:16714284 PMID:23274896 PMID:25327288 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:164,167,928...164,277,435 		JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857409|MGI:1891828 (PMID:17468177)
GO_REF:0000107 		RGD
Ensembl		 PMID:17468177 GO_REF:0000107 NCBI chr18:3,654,237...3,699,853
Ensembl chr18:3,654,237...3,699,800 		JBrowse link
G Nrbp2 nuclear receptor binding protein 2 involved_in ISO
IEA 		(PMID:22354037)
GO_REF:0000107 		RGD
Ensembl		 PMID:22354037 GO_REF:0000107 NCBI chr 7:109,679,330...109,685,656
Ensembl chr 7:109,679,330...109,685,588 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO
IEA 		(PMID:19279012)
GO_REF:0000107 		RGD
Ensembl		 PMID:19279012 GO_REF:0000107 NCBI chr 5:155,813,838...155,825,950
Ensembl chr 5:155,813,838...155,825,950 		JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:4044390 (PMID:24797518)
GO_REF:0000107 		RGD
Ensembl		 PMID:24797518 GO_REF:0000107 NCBI chr10:63,905,287...63,915,655
Ensembl chr10:63,904,691...63,915,655 		JBrowse link
G Qsox1 quiescin sulfhydryl oxidase 1 involved_in ISO
IEA 		(PMID:24475161)
GO_REF:0000107 		RGD
Ensembl		 PMID:24475161 GO_REF:0000107 NCBI chr13:70,500,060...70,537,711
Ensembl chr13:70,500,060...70,537,733 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO
IEA 		(PMID:28195531)
GO_REF:0000107 		RGD
Ensembl		 PMID:28195531 GO_REF:0000107 NCBI chr10:45,957,146...45,968,388
Ensembl chr10:45,957,104...45,968,389 		JBrowse link
G Tsc1 TSC complex subunit 1 involved_in IMP PMID:23435171 ParkinsonsUK-UCL PMID:23435171 RGD:10448950 NCBI chr 3:32,367,434...32,416,565
Ensembl chr 3:32,367,670...32,416,568 		JBrowse link
G Tsc2 TSC complex subunit 2 IMP RGD PMID:24599401 RGD:11568679 NCBI chr10:14,125,679...14,160,317
Ensembl chr10:14,125,680...14,160,600 		JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISO
IEA 		(PMID:22622177)
GO_REF:0000107 		RGD
Ensembl		 PMID:22622177 GO_REF:0000107 NCBI chr10:103,995,970...104,027,492
Ensembl chr10:103,995,970...104,023,450 		JBrowse link
negative regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO MGI:5648633 (PMID:24949970) RGD PMID:24949970 NCBI chr10:5,434,725...5,631,246
Ensembl chr10:5,434,725...5,630,619 		JBrowse link
G Fbxl4 F-box and leucine-rich repeat protein 4 involved_in IEA
ISO 		GO_REF:0000107
(PMID:38992176) 		Ensembl
RGD		 PMID:38992176 GO_REF:0000107 NCBI chr 5:40,752,513...40,826,154
Ensembl chr 5:40,752,521...40,850,826 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO
IEA 		(PMID:19279012)
GO_REF:0000107 		RGD
Ensembl		 PMID:19279012 GO_REF:0000107 NCBI chr 5:155,813,838...155,825,950
Ensembl chr 5:155,813,838...155,825,950 		JBrowse link
G Pptc7 protein phosphatase targeting COQ7 involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000107
(PMID:38992176) 		Ensembl
RGD		 PMID:38992176 GO_REF:0000107 NCBI chr12:39,910,728...39,949,101
Ensembl chr12:39,910,742...39,949,101 		JBrowse link
G Rnf41 ring finger protein 41 acts_upstream_of_or_within ISO
IEA 		MGI:1921624 (PMID:24949970)
GO_REF:0000107 		RGD
Ensembl		 PMID:24949970 GO_REF:0000107 NCBI chr 7:1,422,651...1,461,700
Ensembl chr 7:1,426,408...1,448,164 		JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase acts_upstream_of_or_within ISO
IEA 		MGI:5319187 (PMID:22044588)
GO_REF:0000107 		RGD
Ensembl		 PMID:22044588 GO_REF:0000107 NCBI chr 4:161,613,306...161,632,248
Ensembl chr 4:161,613,306...161,632,229 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO
IEA 		MGI:1857263 (PMID:22044588)
GO_REF:0000107 		RGD
Ensembl		 PMID:22044588 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,798,851...54,810,299 		JBrowse link
G Tspo translocator protein involved_in ISO
IEA 		(PMID:25470454)
GO_REF:0000107 		RGD
Ensembl		 PMID:25470454 GO_REF:0000107 NCBI chr 7:116,600,214...116,610,461
Ensembl chr 7:116,600,210...116,610,460 		JBrowse link
G Usp30 ubiquitin specific peptidase 30 IMP RGD PMID:24896179 RGD:13208875 NCBI chr12:48,161,905...48,215,878
Ensembl chr12:48,161,908...48,215,968 		JBrowse link
negative regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htra2 HtrA serine peptidase 2 involved_in ISO
IEA 		(PMID:24709290)
GO_REF:0000107 		RGD
Ensembl		 PMID:24709290 GO_REF:0000107 NCBI chr 4:117,114,631...117,117,793
Ensembl chr 4:117,114,633...117,117,793 		JBrowse link
G Vps13c vacuolar protein sorting 13 homolog C involved_in ISO
IEA
ISS 		(PMID:26942284)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
ParkinsonsUK-UCL		 PMID:26942284 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:77,359,499...77,533,009
Ensembl chr 8:77,359,504...77,531,871 		JBrowse link
nucleophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg3 autophagy related 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:69,130,948...69,159,280
Ensembl chr11:69,121,952...69,159,280 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:17,448,207...17,454,117 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:107,097,655...107,127,839
Ensembl chr10:107,097,755...107,127,831 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:95,042,441...95,079,293 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:17,024,878...17,071,406 		JBrowse link
pexophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acbd5 acyl-CoA binding domain containing 5 involved_in IEA
ISO 		GO_REF:0000002
(PMID:24535825) 		InterPro
RGD		 PMID:24535825 GO_REF:0000002 NCBI chr17:90,114,250...90,156,286
Ensembl chr17:90,114,375...90,156,286 		JBrowse link
G Acbd5l1 acyl-CoA binding domain containing 5 like 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:6,232,968...6,236,199
Ensembl chr 5:6,233,845...6,236,265 		JBrowse link
G Atg2a autophagy related 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:212,971,822...212,991,505
Ensembl chr 1:212,971,844...212,991,528 		JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:130,286,979...130,357,109
Ensembl chr 6:130,286,986...130,357,109 		JBrowse link
G Atm ATM serine/threonine kinase involved_in
acts_upstream_of_or_within 		ISO (PMID:26344566)
(PMID:27597759) 		RGD PMID:26344566 PMID:27597759 NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:62,727,291...62,828,629 		JBrowse link
G Pex10 peroxisomal biogenesis factor 10 acts_upstream_of_or_within ISO (PMID:26344566), (PMID:27597759) RGD PMID:26344566 PMID:27597759 NCBI chr 5:170,910,136...170,915,302
Ensembl chr 5:170,910,157...170,916,685 		JBrowse link
G Pex12 peroxisomal biogenesis factor 12 acts_upstream_of_or_within ISO (PMID:26344566), (PMID:27597759) RGD PMID:26344566 PMID:27597759 NCBI chr10:68,593,307...68,596,938
Ensembl chr10:68,593,308...68,596,938 		JBrowse link
G Pex2 peroxisomal biogenesis factor 2 involved_in
acts_upstream_of_or_within 		ISS
ISO
IEA 		GO_REF:0000024
(PMID:26344566)
GO_REF:0000107
(PMID:26344566), (PMID:27597759) 		UniProt
RGD
Ensembl		 PMID:26344566 PMID:27597759 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:97,957,479...97,973,767
Ensembl chr 2:97,948,443...97,981,092 		JBrowse link
G Pex5 peroxisomal biogenesis factor 5 involved_in
acts_upstream_of_or_within 		ISS
ISO
IEA 		GO_REF:0000024
(PMID:27597759)
GO_REF:0000107
(PMID:26344566) 		UniProt
RGD
Ensembl		 PMID:26344566 PMID:27597759 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:158,956,973...158,983,581
Ensembl chr 4:158,956,974...158,982,733 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:22,119,677...22,203,546
Ensembl chr18:22,119,792...22,203,539 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:115,146,660...115,195,326
Ensembl chr 8:115,146,687...115,195,326 		JBrowse link
G Pjvk pejvakin involved_in ISO
IEA 		(PMID:30936319)
GO_REF:0000107 		RGD
Ensembl		 PMID:30936319 GO_REF:0000107 NCBI chr 3:82,002,106...82,012,273
Ensembl chr 3:82,002,368...82,012,451 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:17,948,522...18,012,434
Ensembl chr 5:17,948,522...18,012,434 		JBrowse link
G Sqstm1 sequestosome 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:26344566) 		UniProt
Ensembl
RGD		 PMID:26344566 GO_REF:0000024 GO_REF:0000107 NCBI chr10:35,026,598...35,037,750
Ensembl chr10:35,026,598...35,037,750 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:17,448,207...17,454,117 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:107,097,655...107,127,839
Ensembl chr10:107,097,755...107,127,831 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:95,042,441...95,079,293 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:17,024,878...17,071,406 		JBrowse link
piecemeal microautophagy of the nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:41,638,841...41,649,311
Ensembl chr18:41,635,835...41,649,261 		JBrowse link
G Atg13 autophagy related 13 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:98,102,831...98,136,741
Ensembl chr 3:98,101,552...98,136,743 		JBrowse link
G Atg2a autophagy related 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:212,971,822...212,991,505
Ensembl chr 1:212,971,844...212,991,528 		JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:130,286,979...130,357,109
Ensembl chr 6:130,286,986...130,357,109 		JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:109,453,712...109,553,758
Ensembl chr  X:109,453,689...109,553,760 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:101,729,772...101,761,456
Ensembl chr 9:101,726,782...101,761,622 		JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:118,977,594...119,050,894
Ensembl chr 5:118,982,918...119,052,695 		JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:28,083,902...28,093,491
Ensembl chr 8:28,083,936...28,093,491 		JBrowse link
G Atg5 autophagy related 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:49,380,813...49,471,821 		JBrowse link
G Atg7 autophagy related 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:149,391,390...149,598,319 		JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:84,126,071...84,136,666 		JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:11,678,548...11,686,097
Ensembl chr 4:11,678,299...11,686,079 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:17,948,522...18,012,434
Ensembl chr 5:17,948,522...18,012,434 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:79,478,804...79,608,118
Ensembl chr 5:79,478,912...79,607,052 		JBrowse link
G Snx7 sorting nexin 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:208,528,041...208,612,597
Ensembl chr 2:208,528,049...208,613,075 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:51,511,492...51,537,746 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:46,951,038...47,029,844
Ensembl chr10:46,951,038...47,029,844 		JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:66,888,820...66,895,380
Ensembl chr 8:66,888,788...66,895,379 		JBrowse link
positive regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag3 BAG cochaperone 3 involved_in ISO
IEA 		(PMID:18006506)
GO_REF:0000107 		RGD
Ensembl		 PMID:18006506 GO_REF:0000107 NCBI chr 1:192,533,460...192,557,281
Ensembl chr 1:192,475,828...192,557,280 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:22017874) 		UniProt
RGD		 PMID:22017874 GO_REF:0000024 NCBI chr 3:161,170,295...161,217,073
Ensembl chr 3:161,170,405...161,215,698 		JBrowse link
G Hspb8 heat shock protein family B (small) member 8 involved_in ISO
IEA 		(PMID:18006506)
GO_REF:0000107 		RGD
Ensembl		 PMID:18006506 GO_REF:0000107 NCBI chr12:45,835,899...45,866,449
Ensembl chr12:45,837,066...45,851,937 		JBrowse link
G Htt huntingtin involved_in IEA
ISO 		GO_REF:0000107
(PMID:25686248) 		Ensembl
RGD		 PMID:25686248 GO_REF:0000107 NCBI chr14:80,070,456...80,219,668
Ensembl chr14:80,070,456...80,219,668 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IEA
ISO 		GO_REF:0000107
(PMID:31857589) 		Ensembl
RGD		 PMID:31857589 GO_REF:0000107 NCBI chr 1:212,325,089...212,332,640
Ensembl chr 1:212,325,090...212,332,587 		JBrowse link
G Zdhhc19 zinc finger DHHC-type palmitoyltransferase 19 involved_in ISO
IEA 		(PMID:37802024)
GO_REF:0000107 		RGD
Ensembl		 PMID:37802024 GO_REF:0000107 NCBI chr11:81,782,899...81,794,105
Ensembl chr11:81,782,903...81,794,008 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in ISO
IEA 		(PMID:30952800), (PMID:31271352)
GO_REF:0000107 		RGD
Ensembl		 PMID:30952800 PMID:31271352 GO_REF:0000107 NCBI chr 1:212,971,822...212,991,505
Ensembl chr 1:212,971,844...212,991,528 		JBrowse link
G Atg7 autophagy related 7 IMP RGD PMID:33372336 RGD:407571673 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:149,391,390...149,598,319 		JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:62,727,291...62,828,629 		JBrowse link
G Becn1 beclin 1 IMP RGD PMID:25561470 RGD:11561937 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,731,650...86,747,002 		JBrowse link
G Chek2 checkpoint kinase 2 acts_upstream_of_or_within ISO (PMID:37943659) RGD PMID:37943659 NCBI chr12:51,448,838...51,481,159
Ensembl chr12:51,449,140...51,480,667 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO
IEA 		(PMID:21072319)
GO_REF:0000107 		RGD
Ensembl		 PMID:21072319 GO_REF:0000107 NCBI chr 2:198,777,323...198,856,497
Ensembl chr 2:198,777,323...198,856,497 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO
IEA 		(PMID:25484098)
GO_REF:0000107 		RGD
Ensembl		 PMID:25484098 GO_REF:0000107 NCBI chr 3:36,621,042...36,661,932
Ensembl chr 3:36,621,042...36,661,825 		JBrowse link
G Moap1 modulator of apoptosis 1 involved_in ISO (PMID:33783314) RGD PMID:33783314 NCBI chr 6:127,647,389...127,649,324
Ensembl chr 6:127,613,488...127,669,324 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO
IEA 		(PMID:25578879)
GO_REF:0000107 		RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr17:86,405,080...86,576,597
Ensembl chr17:86,405,081...86,576,430 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO
IEA 		(PMID:25578879)
GO_REF:0000107 		RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr10:83,202,379...83,231,292
Ensembl chr10:83,197,287...83,231,292 		JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO
IEA 		(PMID:25578879)
GO_REF:0000107 		RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr 7:64,905,322...64,920,380
Ensembl chr 7:64,905,328...64,920,373 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
ISS
IEA
IBA 		(PMID:25495476)
GO_REF:0000024
GO_REF:0000107
GO_REF:0000033 		RGD
GO_Central
Ensembl		 PMID:25495476 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:41,908,179...41,981,611
Ensembl chr13:41,908,051...41,981,611 		JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:25495476)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr13:99,288,984...99,362,817
Ensembl chr13:99,288,647...99,361,053 		JBrowse link
G Ralb RAS like proto-oncogene B involved_in ISO
IEA 		(PMID:24056301)
GO_REF:0000107 		RGD
Ensembl		 PMID:24056301 GO_REF:0000107 NCBI chr13:33,140,834...33,176,997
Ensembl chr13:33,140,835...33,176,998 		JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 involved_in ISO
IEA 		(PMID:21068542)
GO_REF:0000107 		RGD
Ensembl		 PMID:21068542 GO_REF:0000107 NCBI chr 2:236,411,194...236,445,225
Ensembl chr 2:236,410,436...236,445,140 		JBrowse link
G Snx18 sorting nexin 18 involved_in ISO
IEA 		(PMID:29437695)
GO_REF:0000107 		RGD
Ensembl		 PMID:29437695 GO_REF:0000107 NCBI chr 2:46,965,498...46,991,516
Ensembl chr 2:46,965,498...46,991,516 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in ISO
IEA 		(PMID:32513819)
GO_REF:0000107 		RGD
Ensembl		 PMID:32513819 GO_REF:0000107 NCBI chr 5:79,478,804...79,608,118
Ensembl chr 5:79,478,912...79,607,052 		JBrowse link
G Snx4 sorting nexin 4 involved_in ISO
IBA
IEA 		(PMID:32513819), (PMID:33468622)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:32513819 PMID:33468622 GO_REF:0000033 GO_REF:0000107 NCBI chr11:80,965,965...81,023,234
Ensembl chr11:80,965,967...81,028,448 		JBrowse link
G Snx7 sorting nexin 7 involved_in ISO
IEA 		(PMID:32513819)
GO_REF:0000107 		RGD
Ensembl		 PMID:32513819 GO_REF:0000107 NCBI chr 2:208,528,041...208,612,597
Ensembl chr 2:208,528,049...208,613,075 		JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 5:84,020,604...84,031,483
Ensembl chr 5:84,014,803...84,042,748 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 IMP RGD PMID:23448468 RGD:13208863 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:51,511,492...51,537,746 		JBrowse link
G Usp33 ubiquitin specific peptidase 33 involved_in ISO (PMID:24056301) RGD PMID:24056301 NCBI chr 2:243,938,958...243,988,424
Ensembl chr 2:243,943,175...243,988,424 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
ISS
IEA 		(PMID:31271352)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:31271352 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:17,448,207...17,454,117 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO
IEA 		(PMID:31271352)
GO_REF:0000107 		RGD
Ensembl		 PMID:31271352 GO_REF:0000107 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:95,042,441...95,079,293 		JBrowse link
positive regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 involved_in ISO
IEA
ISS 		(PMID:23708524)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
GO_Central		 PMID:23708524 GO_REF:0000024 GO_REF:0000107 NCBI chr18:57,912,760...57,914,802
Ensembl chr18:57,911,348...57,914,803 		JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 involved_in ISO (PMID:25771791) RGD PMID:25771791 NCBI chr10:81,552,084...81,568,266 JBrowse link
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO MGI:5648633 (PMID:24949970) RGD PMID:24949970 NCBI chr10:5,434,725...5,631,246
Ensembl chr10:5,434,725...5,630,619 		JBrowse link
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in ISO
IEA
IBA 		(PMID:26468287)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:26468287 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:132,289,538...132,356,810
Ensembl chr 8:132,289,539...132,356,451 		JBrowse link
G Irgm immunity-related GTPase M involved_in ISO
IEA 		(PMID:16888103)
GO_REF:0000107 		RGD
Ensembl		 PMID:16888103 GO_REF:0000107 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,732,961...33,743,228 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO
IEA 		(PMID:28195531)
GO_REF:0000107 		RGD
Ensembl		 PMID:28195531 GO_REF:0000107 NCBI chr10:45,957,146...45,968,388
Ensembl chr10:45,957,104...45,968,389 		JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO
IEA 		(PMID:23023224)
GO_REF:0000107 		RGD
Ensembl		 PMID:23023224 GO_REF:0000107 NCBI chr19:13,411,227...13,446,129
Ensembl chr19:13,411,157...13,446,110 		JBrowse link
positive regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elavl1 ELAV like RNA binding protein 1 IMP RGD PMID:33372336 RGD:407571673 NCBI chr12:7,441,699...7,482,625
Ensembl chr12:7,441,699...7,482,631 		JBrowse link
positive regulation of autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Znrf1 zinc and ring finger 1 involved_in ISO
IEA 		FB:FBgn0029911 (PMID:38360932)
GO_REF:0000107 		RGD
Ensembl		 PMID:38360932 GO_REF:0000107 NCBI chr19:56,403,816...56,490,901
Ensembl chr19:56,405,728...56,490,881 		JBrowse link
G Znrf2 zinc and ring finger 2 involved_in ISO FB:FBgn0029911 (PMID:38360932) RGD PMID:38360932 NCBI chr 4:85,274,626...85,358,083
Ensembl chr 4:85,280,702...85,358,083 		JBrowse link
positive regulation of autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07035218.1 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117
G AC108595.1 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117
G Ager advanced glycosylation end product-specific receptor IMP RGD PMID:22293957 RGD:7245565 NCBI chr20:4,152,758...4,155,956
Ensembl chr20:4,151,965...4,155,685 		JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 involved_in IMP
IEA
ISO 		GO_REF:0000117
GO_REF:0000107
(PMID:24980959)
(PMID:21358617), (PMID:31123703), (PMID:32333458) 		UniProt
Ensembl
RGD		 PMID:21358617 PMID:24980959 PMID:31123703 PMID:32333458 PMID:25117440 GO_REF:0000107 GO_REF:0000117, RGD:11552604 NCBI chr 3:98,156,626...98,345,876
Ensembl chr 3:98,156,652...98,345,872 		JBrowse link
G Atf6 activating transcription factor 6 acts_upstream_of_or_within ISO
IEA 		(PMID:28747345)
GO_REF:0000107 		RGD
Ensembl		 PMID:28747345 GO_REF:0000107 NCBI chr13:85,460,312...85,639,959
Ensembl chr13:85,462,840...85,640,033 		JBrowse link
G Atg101 autophagy related 101 involved_in ISO (PMID:19225151) RGD PMID:19225151 NCBI chr 7:134,277,223...134,286,387
Ensembl chr 7:134,272,847...134,286,379 		JBrowse link
G Atg13 autophagy related 13 involved_in ISO
IEA 		(PMID:29487085)
GO_REF:0000107
(PMID:19225151) 		RGD
Ensembl		 PMID:19225151 PMID:29487085 GO_REF:0000107 NCBI chr 3:98,102,831...98,136,741
Ensembl chr 3:98,101,552...98,136,743 		JBrowse link
G Atg16l1 autophagy related 16-like 1 involved_in ISO
IEA 		(PMID:30208760)
GO_REF:0000107 		RGD
Ensembl		 PMID:30208760 GO_REF:0000107 NCBI chr 9:95,869,839...95,905,354
Ensembl chr 9:95,869,865...95,905,357 		JBrowse link
G Atg2a autophagy related 2A involved_in ISO
IEA 		(PMID:32483132)
GO_REF:0000107 		RGD
Ensembl		 PMID:32483132 GO_REF:0000107 NCBI chr 1:212,971,822...212,991,505
Ensembl chr 1:212,971,844...212,991,528 		JBrowse link
G Atg5 autophagy related 5 IMP RGD PMID:30715741 RGD:407445920 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:49,380,813...49,471,821 		JBrowse link
G Atg7 autophagy related 7 IDA
IMP 		RGD PMID:24674959 PMID:33372336 PMID:22498478 PMID:25639566 RGD:11553823, RGD:407571673, RGD:407532701, RGD:11553824 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:149,391,390...149,598,319 		JBrowse link
G Becn1 beclin 1 involved_in IMP
IEA
ISS
ISO 		GO_REF:0000107
GO_REF:0000024
(PMID:21358617) 		Ensembl
UniProt
RGD		 PMID:21358617 PMID:21490676 PMID:22498478 PMID:24674959 GO_REF:0000024 GO_REF:0000107, RGD:6483070, RGD:407532701, RGD:11553823 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,731,650...86,747,002 		JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (PMID:22017875), (PMID:22017876) RGD PMID:22017875 PMID:22017876 NCBI chr 1:254,159,085...254,324,819
Ensembl chr 1:254,159,124...254,328,357 		JBrowse link
G Ccny cyclin Y involved_in ISO (PMID:32098961) RGD PMID:32098961 NCBI chr17:62,079,925...62,207,780
Ensembl chr17:62,079,925...62,207,979 		JBrowse link
G Cdk16 cyclin-dependent kinase 16 involved_in ISO (PMID:32098961) RGD PMID:32098961 NCBI chr  X:4,046,330...4,057,825
Ensembl chr  X:4,026,866...4,057,380 		JBrowse link
G Csnk1a1 casein kinase 1, alpha 1 acts_upstream_of_or_within ISO (PMID:22017875), (PMID:22017876) RGD PMID:22017875 PMID:22017876 NCBI chr18:57,285,156...57,320,540
Ensembl chr18:57,287,412...57,320,538 		JBrowse link
G Cul1 cullin 1 acts_upstream_of_or_within ISO (PMID:22017875), (PMID:22017876) RGD PMID:22017875 PMID:22017876 NCBI chr 4:77,551,781...77,634,210
Ensembl chr 4:77,551,787...77,621,760 		JBrowse link
G Dapk1 death associated protein kinase 1 involved_in ISO (PMID:22095288) RGD PMID:22095288 NCBI chr17:3,935,826...4,096,858
Ensembl chr17:3,935,625...4,096,581 		JBrowse link
G Dcn decorin involved_in ISO (PMID:23798385) RGD PMID:23798385 NCBI chr 7:34,167,973...34,208,004
Ensembl chr 7:34,163,011...34,218,926 		JBrowse link
G Depdc5 DEP domain containing 5, GATOR1 subcomplex subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:81,956,777...82,087,392
Ensembl chr14:81,956,777...82,087,246 		JBrowse link
G Deptor DEP domain containing MTOR-interacting protein involved_in ISO
IEA 		(PMID:22017875), (PMID:22017876), (PMID:22017877)
GO_REF:0000107 		RGD
Ensembl		 PMID:22017875 PMID:22017876 PMID:22017877 GO_REF:0000107 NCBI chr 7:88,404,745...88,574,065
Ensembl chr 7:88,404,620...88,574,041 		JBrowse link
G Dhrsx dehydrogenase/reductase X-linked involved_in ISO
IBA 		(PMID:25076851)
GO_REF:0000033 		RGD
GO_Central		 PMID:25076851 GO_REF:0000033 NCBI chr12:21,413,563...21,418,319
Ensembl chr12:21,413,575...21,418,319 		JBrowse link
G Elavl1 ELAV like RNA binding protein 1 IMP RGD PMID:33372336 RGD:407571673 NCBI chr12:7,441,699...7,482,625
Ensembl chr12:7,441,699...7,482,631 		JBrowse link
G Endog endonuclease G involved_in ISO
IEA 		(PMID:33473107)
GO_REF:0000107 		RGD
Ensembl		 PMID:33473107 GO_REF:0000107 NCBI chr 3:33,846,935...33,849,531
Ensembl chr 3:33,846,885...33,849,573 		JBrowse link
G Fbxw10 F-box and WD repeat domain containing 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:48,012,555...48,051,136
Ensembl chr10:47,958,677...48,051,136 		JBrowse link
G Flcn folliculin involved_in ISO
IEA
ISS 		(PMID:25126726)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:25126726 GO_REF:0000024 GO_REF:0000107 NCBI chr10:45,088,164...45,107,581
Ensembl chr10:45,088,167...45,107,309 		JBrowse link
G Foxo1 forkhead box O1 involved_in ISO
ISS 		(PMID:20543840)
GO_REF:0000024 		RGD
UniProt		 PMID:20543840 GO_REF:0000024 NCBI chr 2:138,462,974...138,541,420
Ensembl chr 2:138,462,697...138,541,419 		JBrowse link
G Foxo3 forkhead box O3 involved_in ISO
IEA 		(PMID:18054315), (PMID:18054316)
GO_REF:0000107 		RGD
Ensembl		 PMID:18054315 PMID:18054316 GO_REF:0000107 NCBI chr20:47,251,968...47,348,254
Ensembl chr20:47,255,878...47,346,845 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in ISS
IBA
ISO 		GO_REF:0000024
GO_REF:0000033
(PMID:22539723) 		UniProt
GO_Central
RGD		 PMID:22539723 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:89,943,669...89,953,514
Ensembl chr 1:89,943,669...89,953,593 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in ISS
IBA
ISO 		GO_REF:0000024
GO_REF:0000033
RNAcentral:URS0000554A4F_10090 (PMID:22539723), (PMID:26160071) 		UniProt
GO_Central
RGD		 PMID:22539723 PMID:26160071 GO_REF:0000024 GO_REF:0000033 NCBI chr11:76,004,502...76,154,665
Ensembl chr11:76,009,507...76,153,249 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in IMP
IEA
ISO 		GO_REF:0000117
(PMID:20819940) 		UniProt
RGD		 PMID:20819940 PMID:23604926 GO_REF:0000117, RGD:10402086 NCBI chr12:11,009,236...11,015,941
Ensembl chr16:39,039,050...39,041,327
Ensembl chr12:39,039,050...39,041,327 		JBrowse link
G Hmgb1-ps34 high mobility group box 1, pseudogene 34 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr  X:75,429,080...75,430,340
Ensembl chr  X:75,429,084...75,430,406 		JBrowse link
G Hmgb1l1 high mobility group box 1 like 1 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 1:88,942,974...88,944,444
Ensembl chr 1:88,927,881...88,944,025
Ensembl chr19:88,927,881...88,944,025 		JBrowse link
G Hmgb1l2 high mobility group box 1 like 2 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr  X:112,467,960...112,469,220
Ensembl chr  X:112,432,846...112,469,219
Ensembl chr16:112,432,846...112,469,219 		JBrowse link
G Hmgb1l3 high mobility group box 1 like 3 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 3:163,238,867...163,253,134
Ensembl chr19:71,943,082...71,944,278 		JBrowse link
G Hmgb1l5 high mobility group box 1 like 5 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr10:40,269,191...40,270,053
Ensembl chr10:40,268,954...40,270,059
Ensembl chr19:40,268,954...40,270,059 		JBrowse link
G Ifnb1 interferon beta 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:26451483) 		UniProt
RGD		 PMID:26451483 GO_REF:0000024 NCBI chr 5:108,066,650...108,067,487
Ensembl chr 5:108,066,650...108,067,487 		JBrowse link
G Ifng interferon gamma involved_in ISO
ISS 		(PMID:23629966), (PMID:26347139)
GO_REF:0000024 		RGD
UniProt		 PMID:23629966 PMID:26347139 GO_REF:0000024 NCBI chr 7:55,789,180...55,793,216
Ensembl chr 7:55,761,736...55,793,216 		JBrowse link
G Irgm immunity-related GTPase M involved_in
acts_upstream_of_or_within 		ISS
ISO
IEA 		GO_REF:0000024
(PMID:25891078)
GO_REF:0000107
(PMID:16888103), (PMID:19620982), (PMID:22874556), (PMID:24751652)
(PMID:16888103), (PMID:25891078), (PMID:28389568), (PMID:29420192) 		UniProt
RGD
Ensembl		 PMID:16888103 PMID:19620982 PMID:22874556 PMID:24751652 PMID:25891078 More... GO_REF:0000024 GO_REF:0000107 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,732,961...33,743,228 		JBrowse link
G Irgq immunity-related GTPase Q involved_in ISO (PMID:39481378) RGD PMID:39481378 NCBI chr 1:89,251,846...89,259,799
Ensembl chr 1:89,239,205...89,259,799 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:22539723)
(PMID:30704899) 		UniProt
Ensembl
RGD		 PMID:22539723 PMID:30704899 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:212,325,089...212,332,640
Ensembl chr 1:212,325,090...212,332,587 		JBrowse link
G LOC108349532 high mobility group protein B1 pseudogene involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 1:172,484,907...172,486,209
Ensembl chr 1:172,484,897...172,486,146 		JBrowse link
G LOC108350839 high mobility group protein B1-like involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 4:92,636,679...92,646,909
Ensembl chr19:71,943,082...71,944,278 		JBrowse link
G LOC134478941 high mobility group protein B1-like involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 5:37,705,069...37,706,161
Ensembl chr19:71,943,082...71,944,278 		JBrowse link
G LOC134483981 high mobility group protein B1-like involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 1:232,223,702...232,226,269
Ensembl chr 1:232,223,273...232,224,642
Ensembl chr16:232,223,273...232,224,642 		JBrowse link
G LOC134485624 high mobility group protein B1-like involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 2:152,634,059...152,634,929
Ensembl chr16:39,039,050...39,041,327 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO
IEA
IBA 		(PMID:22012985)
GO_REF:0000117
GO_REF:0000107
GO_REF:0000033
(PMID:20457918) 		RGD
UniProt
Ensembl
GO_Central		 PMID:20457918 PMID:22012985 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 7:124,706,246...124,867,234
Ensembl chr 7:124,706,080...124,867,239 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IDA RGD PMID:26581593 RGD:12879823 NCBI chr 8:73,578,747...73,650,184
Ensembl chr 8:73,578,752...73,650,184 		JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 involved_in IMP
IEA 		GO_REF:0000117 UniProt
RGD		 PMID:35078016 GO_REF:0000117, RGD:155804282 NCBI chr 5:51,149,524...51,212,012
Ensembl chr 5:51,154,352...51,212,012 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO (PMID:22017875), (PMID:22017876) RGD PMID:22017875 PMID:22017876 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:190,797,185...190,803,411 		JBrowse link
G Mefv MEFV innate immunity regulator, pyrin involved_in ISS
ISO 		GO_REF:0000024
(PMID:26347139) 		UniProt
RGD		 PMID:26347139 GO_REF:0000024 NCBI chr10:12,288,514...12,303,337
Ensembl chr10:12,293,782...12,303,333 		JBrowse link
G Mid2 midline 2 involved_in ISO
IEA 		(PMID:26347139)
GO_REF:0000107 		RGD
Ensembl		 PMID:26347139 GO_REF:0000107 NCBI chr  X:109,143,057...109,245,257
Ensembl chr  X:109,143,253...109,245,255 		JBrowse link
G Mir222 microRNA 222 IMP RGD PMID:33792838 RGD:152025536 NCBI chr  X:6,022,621...6,022,723
Ensembl chr  X:6,022,621...6,022,723 		JBrowse link
G Mtdh metadherin involved_in ISO
IEA 		(PMID:21127263)
GO_REF:0000107 		RGD
Ensembl		 PMID:21127263 GO_REF:0000107 NCBI chr 7:67,192,592...67,250,819
Ensembl chr 7:67,192,393...67,249,584 		JBrowse link
G Mtor mechanistic target of rapamycin kinase acts_upstream_of_or_within ISO (PMID:22017875), (PMID:22017876) RGD PMID:22017875 PMID:22017876 NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:164,167,928...164,277,435 		JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 involved_in ISO
IEA 		(PMID:19898471)
GO_REF:0000107 		RGD
Ensembl		 PMID:19898471 GO_REF:0000107 NCBI chr 4:85,391,142...85,442,281
Ensembl chr 4:85,391,151...85,441,674 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in ISO (PMID:19898471), (PMID:19966812) RGD PMID:19898471 PMID:19966812 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:34,555,832...34,722,846 		JBrowse link
G Nprl2 NPR2-like, GATOR1 complex subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:117,094,443...117,097,639
Ensembl chr 8:117,094,441...117,097,637 		JBrowse link
G Nprl3 NPR3-like, GATOR1 complex subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:15,859,739...15,900,261
Ensembl chr10:15,859,789...15,902,332 		JBrowse link
G Optn optineurin involved_in ISO
IEA 		(PMID:21617041)
GO_REF:0000107 		RGD
Ensembl		 PMID:21617041 GO_REF:0000107 NCBI chr17:78,118,847...78,169,543
Ensembl chr17:78,118,866...78,169,543 		JBrowse link
G Ormdl3 ORMDL sphingolipid biosynthesis regulator 3 acts_upstream_of_or_within ISO (PMID:28747345)
MGI:6369059 (PMID:28747345) 		RGD PMID:28747345 NCBI chr10:84,086,317...84,092,673
Ensembl chr10:84,086,317...84,093,548 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha involved_in ISO (PMID:28910396) RGD PMID:28910396 NCBI chr 1:180,012,248...180,117,786
Ensembl chr 1:180,012,248...180,117,773 		JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase involved_in ISO
IEA 		(PMID:17476689)
GO_REF:0000107 		RGD
Ensembl		 PMID:17476689 GO_REF:0000107 NCBI chr  X:17,289,509...17,294,778
Ensembl chr  X:17,289,509...17,294,778 		JBrowse link
G Plekhf1 pleckstrin homology and FYVE domain containing 1 involved_in ISO
IBA 		(PMID:22115783)
GO_REF:0000033 		RGD
GO_Central		 PMID:22115783 GO_REF:0000033 NCBI chr 1:100,045,340...100,046,817
Ensembl chr 1:100,027,056...100,053,452 		JBrowse link
G Plk2 polo-like kinase 2 involved_in ISO
IEA 		(PMID:23983262)
GO_REF:0000107 		RGD
Ensembl		 PMID:23983262 GO_REF:0000107 NCBI chr 2:43,702,536...43,708,305
Ensembl chr 2:43,701,865...43,708,296 		JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISS
IEA
IBA
ISO 		GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
(PMID:21258367)
(PMID:22012985), (PMID:25891078), (PMID:26103054) 		UniProt
Ensembl
GO_Central
RGD		 PMID:21258367 PMID:22012985 PMID:25891078 PMID:26103054 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:55,967,766...56,003,450
Ensembl chr 2:55,967,351...56,003,450 		JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA
IBA
ISO
ISS 		GO_REF:0000107
GO_REF:0000033
(PMID:21258367)
GO_REF:0000024 		Ensembl
GO_Central
RGD
UniProt		 PMID:21258367 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:125,036,945...125,109,010
Ensembl chr 5:125,042,179...125,108,324 		JBrowse link
G Prkd1 protein kinase D1 involved_in ISO
IEA 		(PMID:22095288)
GO_REF:0000107 		RGD
Ensembl		 PMID:22095288 GO_REF:0000107 NCBI chr 6:73,460,640...73,774,433
Ensembl chr 6:73,460,640...73,836,509 		JBrowse link
G Rab37 RAB37, member RAS oncogene family involved_in IEA
ISO 		GO_REF:0000107
(PMID:38536817) 		Ensembl
RGD		 PMID:38536817 GO_REF:0000107 NCBI chr10:100,833,240...100,900,950
Ensembl chr10:100,833,397...100,900,944 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in ISO
IEA 		(PMID:19225151)
GO_REF:0000107 		RGD
Ensembl		 PMID:19225151 GO_REF:0000107 NCBI chr 5:17,948,522...18,012,434
Ensembl chr 5:17,948,522...18,012,434 		JBrowse link
G Rbx1 ring-box 1 acts_upstream_of_or_within ISO (PMID:22017875), (PMID:22017876) RGD PMID:22017875 PMID:22017876 NCBI chr 7:114,870,893...114,881,194
Ensembl chr 7:114,870,972...114,881,191 		JBrowse link
G Rnf152 ring finger protein 152 involved_in ISO
IEA
IBA
ISS 		(PMID:25936802)
GO_REF:0000002
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024 		RGD
InterPro
Ensembl
GO_Central
UniProt		 PMID:25936802 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:21,838,634...21,918,000
Ensembl chr13:21,838,075...21,962,703 		JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 involved_in ISO
IEA 		UniProtKB:Q14457 (PMID:27853422)
GO_REF:0000107 		RGD
Ensembl		 PMID:27853422 GO_REF:0000107 NCBI chr18:1,387,360...1,509,218
Ensembl chr18:1,387,360...1,509,147 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator involved_in IEA
ISO 		GO_REF:0000107
(PMID:38536817) 		Ensembl
RGD		 PMID:38536817 GO_REF:0000107 NCBI chr  X:15,238,961...15,299,004
Ensembl chr  X:15,239,159...15,298,999 		JBrowse link
G Rps6kb1 ribosomal protein S6 kinase B1 acts_upstream_of_or_within ISO (PMID:22017875), (PMID:22017876) RGD PMID:22017875 PMID:22017876 NCBI chr10:71,817,794...71,865,211
Ensembl chr10:71,815,614...71,865,238 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO
IEA 		(PMID:36359729)
GO_REF:0000107 		RGD
Ensembl		 PMID:36359729 GO_REF:0000107 NCBI chr 8:119,390,207...119,475,863
Ensembl chr 8:119,390,207...119,475,863 		JBrowse link
G Sh3bp4 SH3-domain binding protein 4 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:22575674) 		UniProt
Ensembl
RGD		 PMID:22575674 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:97,107,877...97,186,878
Ensembl chr 9:97,107,877...97,186,878 		JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 involved_in ISO
IEA 		(PMID:17891140)
GO_REF:0000107 		RGD
Ensembl		 PMID:17891140 GO_REF:0000107 NCBI chr 2:236,411,194...236,445,225
Ensembl chr 2:236,410,436...236,445,140 		JBrowse link
G Slc35d3 solute carrier family 35, member D3 involved_in ISO
IEA 		(PMID:27171858)
GO_REF:0000107 		RGD
Ensembl		 PMID:27171858 GO_REF:0000107 NCBI chr 1:16,389,308...16,392,780
Ensembl chr 1:16,389,308...16,392,780 		JBrowse link
G Smo smoothened, frizzled class receptor IDA RGD PMID:31221056 RGD:150521664 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:59,311,041...59,341,281 		JBrowse link
G Sqstm1 sequestosome 1 involved_in ISO
IEA 		(PMID:28871090)
GO_REF:0000107 		RGD
Ensembl		 PMID:28871090 GO_REF:0000107 NCBI chr10:35,026,598...35,037,750
Ensembl chr10:35,026,598...35,037,750 		JBrowse link
G Stk11 serine/threonine kinase 11 involved_in ISO (PMID:23878245) RGD PMID:23878245 NCBI chr 7:10,225,204...10,241,965
Ensembl chr 7:10,225,204...10,241,965 		JBrowse link
G Stk38l serine/threonine kinase 38 like acts_upstream_of_or_within ISO (PMID:35670107) RGD PMID:35670107 NCBI chr 4:181,346,969...181,423,844
Ensembl chr 4:181,364,919...181,423,840 		JBrowse link
G Svip small VCP interacting protein involved_in ISO
IBA 		(PMID:21909394)
GO_REF:0000033 		RGD
GO_Central		 PMID:21909394 GO_REF:0000033 NCBI chr 1:110,723,051...110,728,741
Ensembl chr 1:110,723,051...110,729,075 		JBrowse link
G Syk spleen associated tyrosine kinase acts_upstream_of_or_within ISO (PMID:22017875), (PMID:22017876) RGD PMID:22017875 PMID:22017876 NCBI chr17:12,756,493...12,830,927
Ensembl chr17:12,756,493...12,813,278 		JBrowse link
G Tbk1 TANK-binding kinase 1 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:28871090)
GO_REF:0000107 		RGD
Ensembl		 PMID:28871090 GO_REF:0000107 NCBI chr 7:58,963,319...58,996,357
Ensembl chr 7:58,963,325...58,996,357 		JBrowse link
G Tfeb transcription factor EB involved_in ISO
IEA 		(PMID:21617040), (PMID:22576015), (PMID:23434374)
GO_REF:0000107 		RGD
Ensembl		 PMID:21617040 PMID:22576015 PMID:23434374 GO_REF:0000107 NCBI chr 9:20,696,440...20,752,265
Ensembl chr 9:20,696,441...20,727,863 		JBrowse link
G Ticam1 TIR domain containing adaptor molecule 1 involved_in ISO (PMID:17658277) RGD PMID:17658277 NCBI chr 9:1,189,717...1,197,730
Ensembl chr 9:1,172,963...1,196,892 		JBrowse link
G Tlr9 toll-like receptor 9 IDA RGD PMID:18632594 RGD:2301341 NCBI chr 8:115,743,407...115,747,523
Ensembl chr 8:115,742,889...115,750,148 		JBrowse link
G Tmem59 transmembrane protein 59 involved_in ISO
IEA
IBA 		(PMID:23376921)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:23376921 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:127,191,320...127,212,436
Ensembl chr 5:127,191,030...127,217,531 		JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in ISO
IEA
ISS 		(PMID:22421968), (PMID:22470510)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:22421968 PMID:22470510 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:29,051,267...29,069,486
Ensembl chr 5:29,051,264...29,069,484 		JBrowse link
G Tpcn1 two pore segment channel 1 involved_in ISO
IEA 		(PMID:22012985)
GO_REF:0000107 		RGD
Ensembl		 PMID:22012985 GO_REF:0000107 NCBI chr12:41,633,399...41,690,200
Ensembl chr12:41,633,398...41,690,200 		JBrowse link
G Trim21 tripartite motif-containing 21 involved_in ISO
IEA
IBA 		(PMID:26347139)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:26347139 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:166,376,829...166,399,441
Ensembl chr 1:166,376,829...166,399,449 		JBrowse link
G Trim23 tripartite motif-containing 23 involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000107
(PMID:28871090) 		Ensembl
RGD		 PMID:28871090 GO_REF:0000107 NCBI chr 2:37,036,193...37,069,024
Ensembl chr 2:37,035,477...37,069,526 		JBrowse link
G Trim27 tripartite motif-containing 27 acts_upstream_of_or_within ISO (PMID:35670107) RGD PMID:35670107 NCBI chr17:48,233,999...48,246,348
Ensembl chr17:48,234,002...48,246,348 		JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO
IBA 		(PMID:31123703)
GO_REF:0000033 		RGD
GO_Central		 PMID:31123703 GO_REF:0000033 NCBI chr 5:84,020,604...84,031,483
Ensembl chr 5:84,014,803...84,042,748 		JBrowse link
G Trim65 tripartite motif-containing 65 involved_in ISO
IEA
IBA 		(PMID:26347139)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:26347139 GO_REF:0000033 GO_REF:0000107 NCBI chr10:101,847,822...101,863,052
Ensembl chr10:101,856,819...101,863,251 		JBrowse link
G Trim8 tripartite motif-containing 8 involved_in ISO (PMID:26347139) RGD PMID:26347139 NCBI chr 1:255,311,039...255,325,937
Ensembl chr 1:255,310,457...255,325,937 		JBrowse link
G Tsc2 TSC complex subunit 2 involved_in ISO (PMID:23878245) RGD PMID:23878245 NCBI chr10:14,125,679...14,160,317
Ensembl chr10:14,125,680...14,160,600 		JBrowse link
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:23431188)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:23431188 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:156,919,029...157,027,127
Ensembl chr 5:156,919,085...157,027,127 		JBrowse link
G Ufl1 Ufm1-specific ligase 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:25952549) 		UniProt
Ensembl
RGD		 PMID:25952549 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:43,759,271...43,791,682
Ensembl chr 5:43,758,098...43,791,682 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:25126726), (PMID:29487085), (PMID:35670107)
(PMID:29487085)
GO_REF:0000107
(PMID:19225151), (PMID:22539723) 		RGD
Ensembl		 PMID:19225151 PMID:22539723 PMID:25126726 PMID:29487085 PMID:35670107 GO_REF:0000107 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:51,511,492...51,537,746 		JBrowse link
G Usp20 ubiquitin specific peptidase 20 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:29487085)
GO_REF:0000107 		RGD
Ensembl		 PMID:29487085 GO_REF:0000107 NCBI chr 3:34,670,613...34,704,156
Ensembl chr 3:34,670,685...34,704,156 		JBrowse link
G Usp7 ubiquitin specific peptidase 7 acts_upstream_of_or_within ISO (PMID:22017875), (PMID:22017876) RGD PMID:22017875 PMID:22017876 NCBI chr10:7,335,508...7,432,018
Ensembl chr10:7,367,604...7,432,013 		JBrowse link
G Xbp1 X-box binding protein 1 involved_in ISO (PMID:23184933) RGD PMID:23184933 NCBI chr14:84,604,623...84,609,707
Ensembl chr14:84,604,107...84,609,706 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISO
IEA 		(PMID:22739135)
GO_REF:0000107 		RGD
Ensembl		 PMID:22739135 GO_REF:0000107 NCBI chr 5:142,661,193...142,670,051
Ensembl chr 5:142,661,199...142,669,985 		JBrowse link
positive regulation of autophagy in response to ER overload term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2l11 Bcl2-like 11 IMP RGD PMID:25772147 RGD:13782257 NCBI chr 3:135,820,042...135,857,330
Ensembl chr 3:135,817,562...135,960,695 		JBrowse link
G Bid BH3 interacting domain death agonist IMP RGD PMID:25772147 RGD:13782257 NCBI chr 4:155,785,366...155,808,775
Ensembl chr 4:155,785,377...155,808,275 		JBrowse link
G Ddit3 DNA-damage inducible transcript 3 IMP RGD PMID:25772147 RGD:13782257 NCBI chr 7:65,001,695...65,006,517
Ensembl chr 7:65,005,501...65,006,509 		JBrowse link
positive regulation of autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2 interacting protein 3 IMP RGD PMID:23698117 RGD:11561968 NCBI chr 1:203,137,778...203,154,962
Ensembl chr 1:203,137,778...203,154,962 		JBrowse link
G Camkk2 calcium/calmodulin-dependent protein kinase kinase 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:26103054) 		Ensembl
RGD		 PMID:26103054 GO_REF:0000107 NCBI chr12:39,451,828...39,505,719
Ensembl chr12:39,451,834...39,514,964 		JBrowse link
G Fbxo7 F-box protein 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:19,696,951...19,725,180
Ensembl chr 7:19,696,961...19,725,180 		JBrowse link
positive regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plk3 polo-like kinase 3 involved_in ISO
IEA 		(PMID:27344333)
GO_REF:0000107 		RGD
Ensembl		 PMID:27344333 GO_REF:0000107 NCBI chr 5:135,843,725...135,848,900
Ensembl chr 5:135,843,725...135,848,900 		JBrowse link
positive regulation of lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:23708524)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:23708524 GO_REF:0000024 GO_REF:0000107 NCBI chr18:57,912,760...57,914,802
Ensembl chr18:57,911,348...57,914,803 		JBrowse link
G Htt huntingtin involved_in ISO
IEA 		(PMID:25686248)
GO_REF:0000107 		RGD
Ensembl		 PMID:25686248 GO_REF:0000107 NCBI chr14:80,070,456...80,219,668
Ensembl chr14:80,070,456...80,219,668 		JBrowse link
G Sesn2 sestrin 2 acts_upstream_of_or_within ISO
IEA 		MGI:3587950 (PMID:22958918)
GO_REF:0000107 		RGD
Ensembl		 PMID:22958918 GO_REF:0000107 NCBI chr 5:149,986,304...150,005,255
Ensembl chr 5:149,986,317...150,005,255 		JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 acts_upstream_of_or_within ISO (PMID:25332431) RGD PMID:25332431 NCBI chr17:12,029,189...12,068,234
Ensembl chr17:12,029,189...12,068,234 		JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 acts_upstream_of_or_within ISO
IEA 		(PMID:25332431)
GO_REF:0000107 		RGD
Ensembl		 PMID:25332431 GO_REF:0000107 NCBI chr 6:112,679,623...112,762,470
Ensembl chr 6:112,679,623...112,762,640 		JBrowse link
positive regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2 interacting protein 3 acts_upstream_of_or_within ISO
IEA 		UniProtKB:O60238 (PMID:19273585)
GO_REF:0000107 		RGD
Ensembl		 PMID:19273585 GO_REF:0000107 NCBI chr 1:203,137,778...203,154,962
Ensembl chr 1:203,137,778...203,154,962 		JBrowse link
G Bnip3l BCL2 interacting protein 3 like acts_upstream_of_or_within ISO
IEA 		UniProtKB:Q12983 (PMID:19273585)
GO_REF:0000107 		RGD
Ensembl		 PMID:19273585 GO_REF:0000107 NCBI chr15:45,350,081...45,373,213
Ensembl chr15:45,334,537...45,373,282 		JBrowse link
G Dcn decorin acts_upstream_of_or_within ISO UniProtKB:P35968 (PMID:23798385) RGD PMID:23798385 NCBI chr 7:34,167,973...34,208,004
Ensembl chr 7:34,163,011...34,218,926 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO
IEA 		(PMID:20453062)
GO_REF:0000107
MGI:102548|MGI:2182627 (PMID:20453062) 		RGD
Ensembl		 PMID:20453062 GO_REF:0000107 NCBI chr 1:7,547,369...7,673,449
Ensembl chr 1:7,547,342...7,669,604 		JBrowse link
G Gnai3 G protein subunit alpha i3 involved_in ISO (PMID:12642577) RGD PMID:12642577 NCBI chr 2:198,430,920...198,468,874 JBrowse link
G Gpsm1 G-protein signaling modulator 1 involved_in ISO (PMID:12642577) RGD PMID:12642577 NCBI chr 3:29,538,929...29,565,921
Ensembl chr 3:29,526,802...29,565,920 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO
IEA 		MGI:2386679 (PMID:19273585)
GO_REF:0000107 		RGD
Ensembl		 PMID:19273585 GO_REF:0000107 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:98,359,910...98,405,323 		JBrowse link
G Hmox1 heme oxygenase 1 acts_upstream_of_or_within ISO
IEA 		MGI:2429784 (PMID:20705711)
GO_REF:0000107 		RGD
Ensembl		 PMID:20705711 GO_REF:0000107 NCBI chr19:13,452,365...13,479,823
Ensembl chr19:13,472,884...13,479,818 		JBrowse link
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma involved_in ISO (PMID:23778976) RGD PMID:23778976 NCBI chr  X:157,358,279...157,397,563
Ensembl chr  X:157,367,639...157,392,757 		JBrowse link
G Il4 interleukin 4 involved_in ISS
ISO 		GO_REF:0000024
(PMID:26416964) 		UniProt
RGD		 PMID:26416964 GO_REF:0000024 NCBI chr10:38,272,003...38,277,549
Ensembl chr10:38,272,003...38,277,549 		JBrowse link
G Kdr kinase insert domain receptor acts_upstream_of_or_within ISO
IEA 		UniProtKB:P07585 (PMID:23798385)
GO_REF:0000107 		RGD
Ensembl		 PMID:23798385 GO_REF:0000107 NCBI chr14:32,572,031...32,615,204
Ensembl chr14:32,572,049...32,615,192 		JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator involved_in ISO
IEA 		(PMID:22354037)
GO_REF:0000107 		RGD
Ensembl		 PMID:22354037 GO_REF:0000107 NCBI chr10:42,691,833...42,746,816
Ensembl chr10:42,691,600...42,746,816 		JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 involved_in ISO (PMID:23778976) RGD PMID:23778976 NCBI chr 5:51,149,524...51,212,012
Ensembl chr 5:51,154,352...51,212,012 		JBrowse link
G Pafah1b2 platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 involved_in ISO
IEA 		(PMID:22354037)
GO_REF:0000107 		RGD
Ensembl		 PMID:22354037 GO_REF:0000107 NCBI chr 8:55,156,778...55,208,800
Ensembl chr 8:55,156,779...55,176,836 		JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase acts_upstream_of_or_within ISO
IEA 		(PMID:17476689)
GO_REF:0000107 		RGD
Ensembl		 PMID:17476689 GO_REF:0000107 NCBI chr  X:17,289,509...17,294,778
Ensembl chr  X:17,289,509...17,294,778 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO
IEA 		(PMID:20871098)
GO_REF:0000107 		RGD
Ensembl		 PMID:20871098 GO_REF:0000107 NCBI chr 5:155,813,838...155,825,950
Ensembl chr 5:155,813,838...155,825,950 		JBrowse link
G Rab12 RAB12, member RAS oncogene family involved_in ISO (PMID:23357852) RGD PMID:23357852 NCBI chr 9:113,927,119...113,953,722
Ensembl chr 9:113,927,119...113,953,695 		JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISO
IEA
ISS 		UniProtKB:Q96DA2 (PMID:27103069), (PMID:27334615)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:27103069 PMID:27334615 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:54,562,570...54,587,649
Ensembl chr 5:54,562,570...54,587,637 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in ISO
IEA
IBA 		(PMID:26416964)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000033 		RGD
Ensembl
InterPro
GO_Central		 PMID:26416964 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:83,152,139...83,172,683
Ensembl chr 9:83,154,445...83,172,897 		JBrowse link
G Scoc short coiled-coil protein involved_in ISO
ISS 		(PMID:22354037)
GO_REF:0000024 		RGD
GO_Central		 PMID:22354037 GO_REF:0000024 NCBI chr19:41,564,166...41,593,932
Ensembl chr19:41,564,112...41,597,912 		JBrowse link
G Sesn1 sestrin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:46,876,918...46,970,010
Ensembl chr20:46,876,895...46,970,010 		JBrowse link
G Sesn2 sestrin 2 involved_in ISO
IEA
IBA 		(PMID:23274085)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:23274085 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:149,986,304...150,005,255
Ensembl chr 5:149,986,317...150,005,255 		JBrowse link
G Sesn3 sestrin 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:19,415,307...19,470,943
Ensembl chr 8:19,415,347...19,466,904 		JBrowse link
G Sirt1 sirtuin 1 involved_in ISO
IEA 		(PMID:18296641)
GO_REF:0000107
(PMID:18296641), (PMID:21189328) 		RGD
Ensembl		 PMID:18296641 PMID:21189328 GO_REF:0000107 NCBI chr20:25,305,953...25,328,000
Ensembl chr20:25,305,476...25,328,000 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISS
IEA
ISO
IBA 		GO_REF:0000024
GO_REF:0000107
(PMID:30568238)
GO_REF:0000033
(PMID:30568238), (PMID:30842662), (PMID:37535724) 		UniProt
Ensembl
RGD
GO_Central		 PMID:30568238 PMID:30842662 PMID:37535724 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr18:27,606,196...27,612,544
Ensembl chr18:27,606,196...27,611,947 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in ISO
IEA 		(PMID:22354037)
GO_REF:0000107 		RGD
Ensembl		 PMID:22354037 GO_REF:0000107 NCBI chr 1:92,714,276...92,745,489
Ensembl chr 1:92,714,281...92,744,445 		JBrowse link
G Tbk1 TANK-binding kinase 1 involved_in ISO
IEA 		(PMID:27103069)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:27103069 GO_REF:0000107 GO_REF:0000117 NCBI chr 7:58,963,319...58,996,357
Ensembl chr 7:58,963,325...58,996,357 		JBrowse link
G Trim13 tripartite motif-containing 13 involved_in ISO
IBA
IEA 		(PMID:22178386)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:22178386 GO_REF:0000033 GO_REF:0000107 NCBI chr15:39,909,587...39,948,719
Ensembl chr15:39,902,284...39,958,892 		JBrowse link
G Tsc1 TSC complex subunit 1 IDA RGD PMID:23435171 RGD:10448950 NCBI chr 3:32,367,434...32,416,565
Ensembl chr 3:32,367,670...32,416,568 		JBrowse link
G Tsc2 TSC complex subunit 2 involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000107
(PMID:23778976)
(PMID:20453062)
UniProtKB:Q61037 (PMID:23778976) 		Ensembl
RGD		 PMID:20453062 PMID:23778976 GO_REF:0000107 NCBI chr10:14,125,679...14,160,317
Ensembl chr10:14,125,680...14,160,600 		JBrowse link
G Wac WW domain containing adaptor with coiled-coil involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr17:60,617,702...60,677,771
Ensembl chr17:60,617,544...60,679,267 		JBrowse link
G Wdr24 WD repeat domain 24 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:15,346,835...15,353,384
Ensembl chr10:15,348,241...15,353,582 		JBrowse link
positive regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO
IEA 		(PMID:30217973)
GO_REF:0000107 		RGD
Ensembl		 PMID:30217973 GO_REF:0000107 NCBI chr 3:98,156,626...98,345,876
Ensembl chr 3:98,156,652...98,345,872 		JBrowse link
G Atg7 autophagy related 7 IMP RGD PMID:37042059 RGD:407532700 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:149,391,390...149,598,319 		JBrowse link
G Cers1 ceramide synthase 1 involved_in ISO (PMID:22922758) RGD PMID:22922758 NCBI chr16:19,131,271...19,146,480
Ensembl chr16:19,131,276...19,146,480 		JBrowse link
G Dele1 DAP3 binding cell death enhancer 1 involved_in ISO
IEA 		(PMID:38340717)
GO_REF:0000107 		RGD
Ensembl		 PMID:38340717 GO_REF:0000107 NCBI chr18:30,325,369...30,349,285
Ensembl chr18:30,336,308...30,349,938 		JBrowse link
G Eif2ak1 eukaryotic translation initiation factor 2 alpha kinase 1 involved_in ISO
IEA
ISS 		(PMID:38340717)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:38340717 GO_REF:0000024 GO_REF:0000107 NCBI chr12:15,824,431...15,858,266
Ensembl chr12:15,825,124...15,858,281 		JBrowse link
G Fbxo7 F-box protein 7 involved_in IMP
IEA
ISO 		PMID:26310625
GO_REF:0000107
(PMID:26310625) 		Ensembl
RGD		 PMID:26310625 PMID:26310625 GO_REF:0000107, RGD:11536096 NCBI chr 7:19,696,951...19,725,180
Ensembl chr 7:19,696,961...19,725,180 		JBrowse link
G Gdf1 growth differentiation factor 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr16:19,131,271...19,146,480
Ensembl chr16:19,131,276...19,146,480 		JBrowse link
G Htt huntingtin involved_in IEA
ISO 		GO_REF:0000107
(PMID:25686248) 		Ensembl
RGD		 PMID:25686248 GO_REF:0000107 NCBI chr14:80,070,456...80,219,668
Ensembl chr14:80,070,456...80,219,668 		JBrowse link
G Irgm immunity-related GTPase M involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:33510463)
(PMID:21102437)
(PMID:32939830) 		UniProt
Ensembl
RGD		 PMID:21102437 PMID:32939830 PMID:33510463 GO_REF:0000024 GO_REF:0000107 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,732,961...33,743,228 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in ISO (PMID:31919280) RGD PMID:31919280 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:34,555,832...34,722,846 		JBrowse link
G Oma1 OMA1 zinc metallopeptidase acts_upstream_of_or_within ISO (PMID:38340717) RGD PMID:38340717 NCBI chr 5:123,312,038...123,455,540
Ensembl chr 5:123,312,766...123,366,005 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IMP
IEA
ISO 		GO_REF:0000107
(PMID:26310625) 		Ensembl
RGD		 PMID:26310625 PMID:28608965 GO_REF:0000107, RGD:13432560 NCBI chr 1:51,236,410...52,430,242
Ensembl chr 1:51,210,330...52,430,304 		JBrowse link
G Slc25a4 solute carrier family 25 member 4 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:31618756)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:31618756 GO_REF:0000024 GO_REF:0000107 NCBI chr16:52,805,521...52,809,316
Ensembl chr16:52,805,523...52,811,700 		JBrowse link
G Slc25a5 solute carrier family 25 member 5 involved_in ISS
ISO 		GO_REF:0000024
(PMID:31618756) 		UniProt
RGD		 PMID:31618756 GO_REF:0000024 NCBI chr  X:120,897,616...120,900,683
Ensembl chr  X:120,897,563...120,900,688 		JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in IMP PMID:29934347 UniProt PMID:29934347 RGD:405650300 NCBI chr10:15,355,278...15,357,559
Ensembl chr10:15,355,279...15,357,559 		JBrowse link
G Ube2a ubiquitin-conjugating enzyme E2A involved_in ISO
IEA 		(PMID:23685073)
GO_REF:0000107 		RGD
Ensembl		 PMID:23685073 GO_REF:0000107 NCBI chr  X:120,979,993...120,990,773
Ensembl chr  X:120,978,790...120,990,750 		JBrowse link
G Vps13d vacuolar protein sorting 13 homolog D involved_in ISO
IEA 		(PMID:29307555)
GO_REF:0000107 		RGD
Ensembl		 PMID:29307555 GO_REF:0000107 NCBI chr 5:162,113,732...162,339,121
Ensembl chr 5:162,113,732...162,339,099 		JBrowse link
positive regulation of reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 involved_in ISO
IEA
ISS 		(PMID:32851973), (PMID:36543799)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:32851973 PMID:36543799 GO_REF:0000024 GO_REF:0000107 NCBI chr10:82,390,845...82,402,814
Ensembl chr10:82,390,845...82,400,001 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO
IEA 		(PMID:36543799)
GO_REF:0000107 		RGD
Ensembl		 PMID:36543799 GO_REF:0000107 NCBI chr 3:138,315,006...138,336,691
Ensembl chr 3:138,315,282...138,335,766 		JBrowse link
G Ufl1 Ufm1-specific ligase 1 involved_in ISO
IEA
ISS 		(PMID:36543799)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:36543799 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:43,759,271...43,791,682
Ensembl chr 5:43,758,098...43,791,682 		JBrowse link
positive regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5if1 ATP synthase inhibitory factor subunit 1 involved_in ISO (PMID:24005319) RGD PMID:24005319 NCBI chr 5:150,022,960...150,026,677
Ensembl chr 5:150,022,960...150,026,677 		JBrowse link
G Cdc37 cell division cycle 37, HSP90 cochaperone involved_in ISO (PMID:21855797) RGD PMID:21855797 NCBI chr 8:27,954,292...27,966,935
Ensembl chr 8:27,948,016...27,983,931 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO
IEA 		(PMID:23707074)
GO_REF:0000107 		RGD
Ensembl		 PMID:23707074 GO_REF:0000107 NCBI chr 2:176,902,141...176,916,015
Ensembl chr 2:176,907,154...176,916,985 		JBrowse link
G Hdac6 histone deacetylase 6 involved_in ISO
IEA 		UniProtKB:Q9JK66 (PMID:20457763)
GO_REF:0000107 		RGD
Ensembl		 PMID:20457763 GO_REF:0000107 NCBI chr  X:17,222,538...17,244,373
Ensembl chr  X:17,222,856...17,244,370 		JBrowse link
G Hk2 hexokinase 2 involved_in ISO
IEA 		(PMID:23962723)
GO_REF:0000107 		RGD
Ensembl		 PMID:23962723 GO_REF:0000107 NCBI chr 4:116,792,258...116,841,275
Ensembl chr 4:116,792,258...116,841,275 		JBrowse link
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in ISO (PMID:30217973) RGD PMID:30217973 NCBI chr  X:24,350,708...24,480,798
Ensembl chr  X:24,353,217...24,480,798 		JBrowse link
G Mul1 mitochondrial E3 ubiquitin protein ligase 1 involved_in ISO
IEA 		(PMID:24709290)
GO_REF:0000107 		RGD
Ensembl		 PMID:24709290 GO_REF:0000107 NCBI chr 5:155,936,112...155,945,163
Ensembl chr 5:155,936,111...155,945,163 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO
IEA 		(PMID:20871098)
GO_REF:0000107 		RGD
Ensembl		 PMID:20871098 GO_REF:0000107 NCBI chr 5:155,813,838...155,825,950
Ensembl chr 5:155,813,838...155,825,950 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO
IEA 		(PMID:20457763), (PMID:20871098), (PMID:23212910)
GO_REF:0000107 		RGD
Ensembl		 PMID:20457763 PMID:20871098 PMID:23212910 GO_REF:0000107 NCBI chr 1:51,236,410...52,430,242
Ensembl chr 1:51,210,330...52,430,304 		JBrowse link
G Tomm7 translocase of outer mitochondrial membrane 7 involved_in ISO (PMID:24270810) RGD PMID:24270810 NCBI chr 4:12,197,503...12,204,344
Ensembl chr 4:12,197,491...12,204,343 		JBrowse link
G Vdac1 voltage-dependent anion channel 1 involved_in ISO
IEA 		(PMID:32047033)
GO_REF:0000107 		RGD
Ensembl		 PMID:32047033 GO_REF:0000107 NCBI chr10:37,029,377...37,060,542
Ensembl chr10:37,023,145...37,060,541 		JBrowse link
positive regulation of xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irgm immunity-related GTPase M involved_in ISO (PMID:25891078) RGD PMID:25891078 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,732,961...33,743,228 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO
IEA 		(PMID:23245322)
GO_REF:0000107 		RGD
Ensembl		 PMID:23245322 GO_REF:0000107 NCBI chr 3:36,621,042...36,661,932
Ensembl chr 3:36,621,042...36,661,825 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO MGI:1346858 (PMID:22033934) RGD PMID:22033934 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:190,797,185...190,803,411 		JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 acts_upstream_of_or_within ISO
IEA 		MGI:2674231 (PMID:22033934)
GO_REF:0000107 		RGD
Ensembl		 PMID:22033934 GO_REF:0000107 NCBI chr 4:85,391,142...85,442,281
Ensembl chr 4:85,391,151...85,441,674 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 acts_upstream_of_or_within ISO MGI:3529594 (PMID:22033934) RGD PMID:22033934 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:34,555,832...34,722,846 		JBrowse link
G Optn optineurin involved_in ISO
IEA 		(PMID:21617041)
GO_REF:0000107 		RGD
Ensembl		 PMID:21617041 GO_REF:0000107 NCBI chr17:78,118,847...78,169,543
Ensembl chr17:78,118,866...78,169,543 		JBrowse link
G Ripk2 receptor-interacting serine-threonine kinase 2 acts_upstream_of_or_within ISO
IEA 		MGI:2660793 (PMID:22033934)
GO_REF:0000107 		RGD
Ensembl		 PMID:22033934 GO_REF:0000107 NCBI chr 5:34,428,573...34,459,808
Ensembl chr 5:34,428,573...34,459,663 		JBrowse link
G Rnf31 ring finger protein 31 involved_in ISO
IEA 		(PMID:28481331)
GO_REF:0000107 		RGD
Ensembl		 PMID:28481331 GO_REF:0000107 NCBI chr15:33,053,450...33,065,285
Ensembl chr15:33,053,607...33,065,284 		JBrowse link
G Tbk1 TANK-binding kinase 1 involved_in ISO
IEA 		(PMID:21617041)
GO_REF:0000107 		RGD
Ensembl		 PMID:21617041 GO_REF:0000107 NCBI chr 7:58,963,319...58,996,357
Ensembl chr 7:58,963,325...58,996,357 		JBrowse link
G Tlr2 toll-like receptor 2 acts_upstream_of_or_within ISO MGI:2674036 (PMID:22033934) RGD PMID:22033934 NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:171,497,060...171,520,194 		JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within ISO (PMID:24954904) RGD PMID:24954904 NCBI chr 9:95,869,839...95,905,354
Ensembl chr 9:95,869,865...95,905,357 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within ISO (PMID:23918802) RGD PMID:23918802 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:49,380,813...49,471,821 		JBrowse link
G Irgm immunity-related GTPase M involved_in ISO (PMID:28389568) RGD PMID:28389568 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,732,961...33,743,228 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) RGD PMID:24954904 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:17,024,878...17,071,406 		JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfip2 ARF interacting protein 2 involved_in ISO
IEA
ISS 		(PMID:33773106)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:33773106 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:169,387,484...169,392,290
Ensembl chr 1:169,387,485...169,392,166 		JBrowse link
G Atg13 autophagy related 13 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:98,102,831...98,136,741
Ensembl chr 3:98,101,552...98,136,743 		JBrowse link
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within
involved_in 		ISO
IEA 		PR:Q80W47 (PMID:24954904)
(PMID:32960676)
GO_REF:0000107 		RGD
Ensembl		 PMID:24954904 PMID:32960676 GO_REF:0000107 NCBI chr 9:95,869,839...95,905,354
Ensembl chr 9:95,869,865...95,905,357 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IEA 		(PMID:33773106)
GO_REF:0000107 		RGD
Ensembl		 PMID:33773106 GO_REF:0000107 NCBI chr 9:101,729,772...101,761,456
Ensembl chr 9:101,726,782...101,761,622 		JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO
IEA 		(PMID:33773106)
GO_REF:0000107 		RGD
Ensembl		 PMID:33773106 GO_REF:0000107 NCBI chr 8:28,083,902...28,093,491
Ensembl chr 8:28,083,936...28,093,491 		JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:84,126,071...84,136,666 		JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:11,678,548...11,686,097
Ensembl chr 4:11,678,299...11,686,079 		JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) RGD PMID:33773106 NCBI chr 2:173,919,330...174,500,536
Ensembl chr 2:173,921,747...174,500,527 		JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within ISO
IEA 		(PMID:23455425)
GO_REF:0000107 		RGD
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chr 5:163,587,463...163,617,363
Ensembl chr 5:163,587,463...163,618,495 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO
IEA 		(PMID:23455425)
GO_REF:0000107 		RGD
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chr 6:137,918,040...137,977,767
Ensembl chr 6:137,918,051...137,977,767 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 acts_upstream_of_or_within ISO
IEA 		(PMID:24098492)
GO_REF:0000107 		RGD
Ensembl		 PMID:24098492 GO_REF:0000107 NCBI chr18:22,119,677...22,203,546
Ensembl chr18:22,119,792...22,203,539 		JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in IEA
ISO 		GO_REF:0000107
(PMID:32960676) 		Ensembl
RGD		 PMID:32960676 GO_REF:0000107 NCBI chr 2:137,678,953...137,689,581
Ensembl chr 2:137,678,978...137,689,581 		JBrowse link
G Stx17 syntaxin 17 acts_upstream_of_or_within ISO
IEA 		(PMID:23455425)
GO_REF:0000107 		RGD
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chr 5:67,241,673...67,302,228
Ensembl chr 5:67,241,727...67,302,218 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:17,448,207...17,454,117 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:107,097,655...107,127,839
Ensembl chr10:107,097,755...107,127,831 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000117 		GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000117 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:95,042,441...95,079,293 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA
ISS 		(PMID:28561066)
GO_REF:0000117
GO_REF:0000107
PR:Q8C0J2 (PMID:24954904)
GO_REF:0000033
GO_REF:0000024 		RGD
UniProt
Ensembl
GO_Central		 PMID:24954904 PMID:28561066 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:17,024,878...17,071,406 		JBrowse link
protein targeting to lysosome involved in chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clu clusterin involved_in ISO
IEA 		(PMID:9228033)
GO_REF:0000107 		RGD
Ensembl		 PMID:9228033 GO_REF:0000107 NCBI chr15:44,336,619...44,375,861
Ensembl chr15:44,359,914...44,375,860 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in ISS
ISO 		GO_REF:0000024
(PMID:11559757), (PMID:26212789), (PMID:36586411) 		UniProt
RGD		 PMID:11559757 PMID:26212789 PMID:36586411 GO_REF:0000024 NCBI chr 8:50,080,514...50,084,376
Ensembl chr 8:50,080,199...50,084,372 		JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA
IGI
IMP
ISS 		(PMID:27628032)
GO_REF:0000117
GO_REF:0000033
GO_REF:0000107
PMID:18644871
GO_REF:0000024 		RGD
UniProt
GO_Central
Ensembl		 PMID:27628032 PMID:18644871 PMID:18644871 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117, RGD:10412301, RGD:10412301 NCBI chr  X:122,038,734...122,087,745
Ensembl chr  X:121,922,187...122,087,675 		JBrowse link
G Zdhhc12 zinc finger DHHC-type palmitoyltransferase 12 acts_upstream_of_or_within ISO (PMID:36586411) RGD PMID:36586411 NCBI chr 3:33,761,338...33,764,207
Ensembl chr 3:33,761,353...33,764,323 		JBrowse link
protein targeting to vacuole involved in autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ate1 arginyltransferase 1 acts_upstream_of_or_within ISO (PMID:34893540) RGD PMID:34893540 NCBI chr 1:194,391,843...194,514,284
Ensembl chr 1:194,391,843...194,511,348 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 acts_upstream_of_or_within ISO (PMID:37802024) RGD PMID:37802024 NCBI chr 3:161,170,295...161,217,073
Ensembl chr 3:161,170,405...161,215,698 		JBrowse link
G Hdac6 histone deacetylase 6 acts_upstream_of_or_within ISO (PMID:37802024) RGD PMID:37802024 NCBI chr  X:17,222,538...17,244,373
Ensembl chr  X:17,222,856...17,244,370 		JBrowse link
G Irgm immunity-related GTPase M involved_in
acts_upstream_of_or_within 		ISO (PMID:29420192)
(PMID:36221902) 		RGD PMID:29420192 PMID:36221902 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,732,961...33,743,228 		JBrowse link
G Kat5 lysine acetyltransferase 5 acts_upstream_of_or_within ISO (PMID:37802024) RGD PMID:37802024 NCBI chr 1:212,325,089...212,332,640
Ensembl chr 1:212,325,090...212,332,587 		JBrowse link
G Kcmf1 potassium channel modulatory factor 1 acts_upstream_of_or_within ISO (PMID:34893540) RGD PMID:34893540 NCBI chr 4:106,447,974...106,508,359
Ensembl chr 4:106,447,981...106,508,359 		JBrowse link
G Lypla1 lysophospholipase 1 acts_upstream_of_or_within ISO (PMID:37802024) RGD PMID:37802024 NCBI chr 5:19,477,408...19,506,568
Ensembl chr 5:19,477,409...19,506,522 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO
IEA 		(PMID:22020285)
GO_REF:0000107 		RGD
Ensembl		 PMID:22020285 GO_REF:0000107 NCBI chr12:14,748,717...14,840,273
Ensembl chr12:14,749,043...14,840,273 		JBrowse link
G Sqstm1 sequestosome 1 involved_in
acts_upstream_of_or_within 		ISS
ISO
IEA 		GO_REF:0000024
(PMID:37802024)
GO_REF:0000107
(PMID:27498865), (PMID:34893540), (PMID:36221902), (PMID:37802024) 		UniProt
RGD
Ensembl		 PMID:27498865 PMID:34893540 PMID:36221902 PMID:37802024 GO_REF:0000024 GO_REF:0000107 NCBI chr10:35,026,598...35,037,750
Ensembl chr10:35,026,598...35,037,750 		JBrowse link
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 acts_upstream_of_or_within ISO (PMID:34893540) RGD PMID:34893540 NCBI chr 5:156,919,029...157,027,127
Ensembl chr 5:156,919,085...157,027,127 		JBrowse link
G Zdhhc19 zinc finger DHHC-type palmitoyltransferase 19 acts_upstream_of_or_within ISO (PMID:37802024) RGD PMID:37802024 NCBI chr11:81,782,899...81,794,105
Ensembl chr11:81,782,903...81,794,008 		JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:62,727,291...62,828,629 		JBrowse link
G Chek2 checkpoint kinase 2 involved_in ISO
IEA 		(PMID:37943659)
GO_REF:0000107 		RGD
Ensembl		 PMID:37943659 GO_REF:0000107 NCBI chr12:51,448,838...51,481,159
Ensembl chr12:51,449,140...51,480,667 		JBrowse link
G Efnb1 ephrin B1 acts_upstream_of_positive_effect ISO
IEA 		(PMID:33280498)
GO_REF:0000107 		RGD
Ensembl		 PMID:33280498 GO_REF:0000107 NCBI chr  X:68,297,529...68,310,335
Ensembl chr  X:68,297,492...68,349,546 		JBrowse link
G Ephb2 Eph receptor B2 acts_upstream_of_positive_effect ISO
IEA 		(PMID:33280498)
GO_REF:0000107 		RGD
Ensembl		 PMID:33280498 GO_REF:0000107 NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:154,179,065...154,360,615 		JBrowse link
G Ift20 intraflagellar transport 20 involved_in ISO
IEA 		(PMID:24089209)
GO_REF:0000107 		RGD
Ensembl		 PMID:24089209 GO_REF:0000107 NCBI chr10:63,930,629...63,936,174
Ensembl chr10:63,930,681...63,936,172 		JBrowse link
G Ift88 intraflagellar transport 88 involved_in ISO (PMID:24089209) RGD PMID:24089209 NCBI chr15:35,685,678...35,786,875
Ensembl chr15:35,688,927...35,781,634 		JBrowse link
G Mtmr3 myotubularin related protein 3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:25578879) 		Ensembl
RGD		 PMID:25578879 GO_REF:0000107 NCBI chr14:83,564,065...83,684,573
Ensembl chr14:83,564,065...83,684,473 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO
IEA 		(PMID:23524951)
GO_REF:0000107 		RGD
Ensembl		 PMID:23524951 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:164,167,928...164,277,435 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO
IEA 		(PMID:25578879)
GO_REF:0000107 		RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr 9:74,057,488...74,151,610
Ensembl chr 9:74,057,514...74,151,610 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in ISO (PMID:20545908) RGD PMID:20545908 NCBI chr 1:211,835,133...211,843,408
Ensembl chr 1:211,835,073...211,843,337
Ensembl chr  X:211,835,073...211,843,337 		JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISO
IEA
ISS 		(PMID:27334615)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:27334615 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:54,562,570...54,587,649
Ensembl chr 5:54,562,570...54,587,637 		JBrowse link
G Rnf186 ring finger protein 186 acts_upstream_of_positive_effect ISO
IEA 		(PMID:33280498)
GO_REF:0000107 		RGD
Ensembl		 PMID:33280498 GO_REF:0000107 NCBI chr 5:156,493,750...156,494,974
Ensembl chr 5:156,493,752...156,494,978 		JBrowse link
G Rnf5 ring finger protein 5 acts_upstream_of_or_within ISO
IEA 		MGI:3775796 (PMID:23093945)
GO_REF:0000107 		RGD
Ensembl		 PMID:23093945 GO_REF:0000107 NCBI chr20:4,150,032...4,152,593
Ensembl chr20:4,150,138...4,152,591 		JBrowse link
G Tbc1d12 TBC1 domain family, member 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:246,015,985...246,098,241
Ensembl chr 1:246,015,994...246,098,241 		JBrowse link
G Tbc1d14 TBC1 domain family, member 14 involved_in ISO
IBA
IEA 		(PMID:22613832)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:22613832 GO_REF:0000033 GO_REF:0000107 NCBI chr14:78,397,345...78,496,863
Ensembl chr14:78,397,355...78,496,865 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:20529957) RGD PMID:20529957 NCBI chr  X:21,228,809...21,232,228
Ensembl chr  X:21,229,197...21,232,268 		JBrowse link
regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in ISO (PMID:22342342) RGD PMID:22342342 NCBI chr18:41,638,841...41,649,311
Ensembl chr18:41,635,835...41,649,261 		JBrowse link
G Atg5 autophagy related 5 involved_in ISO
IEA 		(PMID:22342342)
GO_REF:0000107 		RGD
Ensembl		 PMID:22342342 GO_REF:0000107 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:49,380,813...49,471,821 		JBrowse link
G Clec16a C-type lectin domain containing 16A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:5,434,725...5,631,246
Ensembl chr10:5,434,725...5,630,619 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO
IEA 		(PMID:26450516)
GO_REF:0000107 		RGD
Ensembl		 PMID:26450516 GO_REF:0000107 NCBI chr 1:190,586,649...190,600,034
Ensembl chr 1:190,586,650...190,597,929 		JBrowse link
G Tbc1d25 TBC1 domain family, member 25 involved_in ISO
IEA
IBA 		(PMID:21383079)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:21383079 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:16,986,629...17,010,228
Ensembl chr  X:16,986,269...17,010,230 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISO
IEA 		(PMID:22342342)
GO_REF:0000107 		RGD
Ensembl		 PMID:22342342 GO_REF:0000107 NCBI chr12:15,504,456...15,534,541
Ensembl chr12:15,505,343...15,534,116 		JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in IMP
IEA
IBA
ISO 		GO_REF:0000107
GO_REF:0000033
(PMID:22186024) 		Ensembl
GO_Central
RGD		 PMID:22186024 PMID:22186024 GO_REF:0000033 GO_REF:0000107, RGD:13442482 NCBI chr 5:158,575,727...158,595,157
Ensembl chr 5:158,575,749...158,595,156 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO
IEA 		(PMID:25878248)
GO_REF:0000107 		RGD
Ensembl		 PMID:25878248 GO_REF:0000107 NCBI chr 1:190,586,649...190,600,034
Ensembl chr 1:190,586,650...190,597,929 		JBrowse link
G Dnajc16 DnaJ heat shock protein family (Hsp40) member C16 involved_in ISS
ISO 		GO_REF:0000024
(PMID:32492081) 		UniProt
RGD		 PMID:32492081 GO_REF:0000024 NCBI chr 5:159,355,279...159,389,267
Ensembl chr 5:159,361,314...159,389,298 		JBrowse link
regulation of autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acer2 alkaline ceramidase 2 involved_in ISO (PMID:28294157) RGD PMID:28294157 NCBI chr 5:106,437,773...106,488,572
Ensembl chr 5:106,437,796...106,488,583 		JBrowse link
G Atm ATM serine/threonine kinase involved_in ISO
IEA 		(PMID:23878245)
GO_REF:0000117 		RGD
UniProt		 PMID:23878245 GO_REF:0000117 NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:62,727,291...62,828,629 		JBrowse link
G Bckdk branched chain ketoacid dehydrogenase kinase acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:191,945,809...191,950,480
Ensembl chr 1:191,946,471...191,953,453 		JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in ISO (PMID:22258505) RGD PMID:22258505 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:23,204,464...23,366,900 		JBrowse link
G Becn1 beclin 1 involved_in ISO
IEA 		(PMID:16799551), (PMID:18797192)
GO_REF:0000107 		RGD
Ensembl		 PMID:16799551 PMID:18797192 GO_REF:0000107 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,731,650...86,747,002 		JBrowse link
G Bok BCL2 family apoptosis regulator BOK involved_in ISO
IEA 		(PMID:24113155)
GO_REF:0000107 		RGD
Ensembl		 PMID:24113155 GO_REF:0000107 NCBI chr 9:101,670,729...101,681,834
Ensembl chr 9:101,670,625...101,681,833 		JBrowse link
G Casp1 caspase 1 acts_upstream_of_or_within ISO MGI:2158744 (PMID:24581500) RGD PMID:24581500 NCBI chr 8:10,746,338...10,882,295
Ensembl chr 8:10,746,333...10,882,275 		JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:17683935) RGD PMID:17683935 NCBI chr 3:163,631,054...163,671,569
Ensembl chr 3:163,631,054...163,671,569 		JBrowse link
G Cisd1 CDGSH iron sulfur domain 1 involved_in IEA GO_REF:0000002
GO_REF:0000104 		InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr20:17,254,462...17,267,843
Ensembl chr20:17,254,187...17,271,042 		JBrowse link
G Cisd2 CDGSH iron sulfur domain 2 involved_in ISO
IEA 		(PMID:20010695)
GO_REF:0000002
GO_REF:0000104 		RGD
InterPro
UniProt		 PMID:20010695 GO_REF:0000002 GO_REF:0000104 NCBI chr 2:226,502,517...226,527,325
Ensembl chr 2:226,502,517...226,540,080 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO
IEA 		(PMID:27101989)
GO_REF:0000107 		RGD
Ensembl		 PMID:27101989 GO_REF:0000107 NCBI chr 1:190,586,649...190,600,034
Ensembl chr 1:190,586,650...190,597,929 		JBrowse link
G Cryba1 crystallin, beta A1 IMP RGD PMID:21266465 RGD:126925759 NCBI chr10:63,106,465...63,113,020
Ensembl chr10:63,106,475...63,112,817 		JBrowse link
G Dcaf12 DDB1 and CUL4 associated factor 12 acts_upstream_of ISO
IEA 		(PMID:31267705)
GO_REF:0000107 		RGD
Ensembl		 PMID:31267705 GO_REF:0000107 NCBI chr 5:61,256,353...61,278,155
Ensembl chr 5:61,256,353...61,278,119 		JBrowse link
G Ddit3 DNA-damage inducible transcript 3 involved_in IMP PMID:28694771 UniProt PMID:28694771 RGD:14390049 NCBI chr 7:65,001,695...65,006,517
Ensembl chr 7:65,005,501...65,006,509 		JBrowse link
G Depp1 DEPP autophagy regulator 1 involved_in ISO
IBA
IEA 		(PMID:28545464)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:28545464 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:151,583,105...151,585,455
Ensembl chr 4:151,581,502...151,586,233 		JBrowse link
G Dram1 DNA-damage regulated autophagy modulator 1 involved_in ISO
IEA
IBA 		(PMID:19895784)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:19895784 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:24,630,233...24,665,270
Ensembl chr 7:24,630,238...24,664,354 		JBrowse link
G Dram2 DNA damage regulated autophagy modulator 2 involved_in ISO
IEA
IBA 		(PMID:19895784)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:19895784 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:196,724,052...196,752,645
Ensembl chr 2:196,723,858...196,755,103 		JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit acts_upstream_of_or_within ISO MGI:3028660 (PMID:18443001) RGD PMID:18443001 NCBI chr10:2,926,085...2,958,176
Ensembl chr10:2,920,455...2,955,539 		JBrowse link
G Fbxl2 F-box and leucine-rich repeat protein 2 involved_in ISO
IEA 		(PMID:23604317)
GO_REF:0000107 		RGD
Ensembl		 PMID:23604317 GO_REF:0000107 NCBI chr 8:122,794,870...122,843,265
Ensembl chr 8:122,794,870...122,854,798 		JBrowse link
G Gpr137 G protein-coupled receptor 137 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:213,558,846...213,562,422
Ensembl chr 1:213,558,846...213,563,966 		JBrowse link
G Gpr137b G protein-coupled receptor 137B involved_in ISO
IBA 		(PMID:31036939)
GO_REF:0000033 		RGD
GO_Central		 PMID:31036939 GO_REF:0000033 NCBI chr17:92,987,792...93,026,003
Ensembl chr17:92,942,559...93,025,911 		JBrowse link
G Kat8 lysine acetyltransferase 8 acts_upstream_of_or_within ISO
IEA 		(PMID:23863932)
GO_REF:0000107 		RGD
Ensembl		 PMID:23863932 GO_REF:0000107 NCBI chr 1:191,954,827...191,967,107
Ensembl chr 1:191,954,438...191,967,105 		JBrowse link
G Keap1 Kelch-like ECH-associated protein 1 involved_in ISO
IEA
ISS 		(PMID:20452972)
(PMID:20173742), (PMID:20421418)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:20173742 PMID:20421418 PMID:20452972 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:28,044,555...28,054,042
Ensembl chr 8:28,044,555...28,054,042 		JBrowse link
G Lamp3 lysosomal-associated membrane protein 3 involved_in ISO (PMID:25681212) RGD PMID:25681212 NCBI chr11:94,657,817...94,726,451
Ensembl chr11:94,661,399...94,726,195 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO
IEA 		(PMID:24211199)
GO_REF:0000107 		RGD
Ensembl		 PMID:24211199 GO_REF:0000107 NCBI chr 7:124,706,246...124,867,234
Ensembl chr 7:124,706,080...124,867,239 		JBrowse link
G Mapk15 mitogen-activated protein kinase 15 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:22948227) 		UniProt
Ensembl
RGD		 PMID:22948227 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:109,575,619...109,595,339
Ensembl chr 7:109,575,561...109,595,346 		JBrowse link
G Mapt microtubule-associated protein tau acts_upstream_of_or_within ISO UniProtKB:O15118 (PMID:19074461) RGD PMID:19074461 NCBI chr10:89,638,618...89,736,108
Ensembl chr10:89,638,599...89,736,108 		JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within ISO
IEA 		MGI:4456699 (PMID:26681805)
GO_REF:0000107 		RGD
Ensembl		 PMID:26681805 GO_REF:0000107 NCBI chr 2:125,749,994...125,784,689
Ensembl chr 2:125,749,994...125,785,919 		JBrowse link
G Mtcl1 microtubule crosslinking factor 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:113,722,138...113,888,413
Ensembl chr 9:113,753,000...113,888,098 		JBrowse link
G Mtcl2 microtubule crosslinking factor 2 involved_in ISO
IEA 		(PMID:20813965)
GO_REF:0000002
GO_REF:0000107 		RGD
InterPro
Ensembl		 PMID:20813965 GO_REF:0000002 GO_REF:0000107 NCBI chr 3:166,089,141...166,161,043
Ensembl chr 3:166,095,480...166,161,102 		JBrowse link
G Mtcl3 MTCL family member 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:30,469,698...30,530,205
Ensembl chr 1:30,453,046...30,529,122 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:24011591) 		UniProt
Ensembl
RGD		 PMID:24011591 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:164,167,928...164,277,435 		JBrowse link
G Nlrp6 NLR family, pyrin domain containing 6 acts_upstream_of_or_within ISO
IEA 		MGI:5085850 (PMID:24581500)
GO_REF:0000107 		RGD
Ensembl		 PMID:24581500 GO_REF:0000107 NCBI chr 1:205,434,484...205,441,245
Ensembl chr 1:205,434,484...205,441,245 		JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in IMP PMID:28694771 UniProt PMID:28694771 RGD:14390049 NCBI chr 1:190,643,866...190,645,901
Ensembl chr 1:190,643,867...190,645,901 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in ISO
IEA 		(PMID:16799551)
GO_REF:0000107 		RGD
Ensembl		 PMID:16799551 GO_REF:0000107 NCBI chr18:22,119,677...22,203,546
Ensembl chr18:22,119,792...22,203,539 		JBrowse link
G Pik3r2 phosphoinositide-3-kinase regulatory subunit 2 involved_in ISO
IEA
ISS 		(PMID:23604317)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:23604317 GO_REF:0000024 GO_REF:0000107 NCBI chr16:18,699,389...18,708,045
Ensembl chr16:18,699,448...18,709,665 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 involved_in ISO
IEA 		(PMID:16799551)
GO_REF:0000107 		RGD
Ensembl		 PMID:16799551 GO_REF:0000107 NCBI chr 8:115,146,660...115,195,326
Ensembl chr 8:115,146,687...115,195,326 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000117
GO_REF:0000107
(PMID:29727621)
(PMID:25578879) 		UniProt
Ensembl
RGD		 PMID:25578879 PMID:29727621 GO_REF:0000024 GO_REF:0000107 GO_REF:0000117 NCBI chr17:86,405,080...86,576,597
Ensembl chr17:86,405,081...86,576,430 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000117
GO_REF:0000107
(PMID:29727621)
(PMID:25578879) 		UniProt
Ensembl
RGD		 PMID:25578879 PMID:29727621 GO_REF:0000024 GO_REF:0000107 GO_REF:0000117 NCBI chr10:83,202,379...83,231,292
Ensembl chr10:83,197,287...83,231,292 		JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO
IEA 		(PMID:25578879)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:25578879 GO_REF:0000107 GO_REF:0000117 NCBI chr 7:64,905,322...64,920,380
Ensembl chr 7:64,905,328...64,920,373 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO
IEA
ISS 		(PMID:20889974)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:20889974 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:51,236,410...52,430,242
Ensembl chr 1:51,210,330...52,430,304 		JBrowse link
G Pycard PYD and CARD domain containing acts_upstream_of_or_within ISO
IEA 		MGI:3686870 (PMID:24581500)
GO_REF:0000107 		RGD
Ensembl		 PMID:24581500 GO_REF:0000107 NCBI chr 1:192,032,124...192,033,419
Ensembl chr 1:192,032,124...192,033,419 		JBrowse link
G Rab8a RAB8A, member RAS oncogene family involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:27103069) 		UniProt
Ensembl
RGD		 PMID:27103069 GO_REF:0000024 GO_REF:0000107 NCBI chr16:17,688,049...17,709,412
Ensembl chr16:17,688,050...17,709,477 		JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISO
IEA
ISS 		(PMID:27103069)
GO_REF:0000107
(PMID:27193190), (PMID:27617292), (PMID:27875531)
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:27103069 PMID:27193190 PMID:27617292 PMID:27875531 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:54,562,570...54,587,649
Ensembl chr 5:54,562,570...54,587,637 		JBrowse link
G Rmc1 regulator of MON1-CCZ1 involved_in ISO
IEA
IBA 		(PMID:29038162)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000033 		RGD
Ensembl
InterPro
GO_Central		 PMID:29038162 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr18:3,634,604...3,654,519
Ensembl chr18:3,634,588...3,654,549 		JBrowse link
G Rptor regulatory associated protein of MTOR, complex 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:105,376,943...105,675,416
Ensembl chr10:105,376,943...105,675,413 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO
IEA 		(PMID:27103069)
GO_REF:0000107
(PMID:27617292) 		RGD
Ensembl		 PMID:27103069 PMID:27617292 GO_REF:0000107 NCBI chr10:45,957,146...45,968,388
Ensembl chr10:45,957,104...45,968,389 		JBrowse link
G Tpcn2 two pore segment channel 2 involved_in ISO
IEA 		UniProtKB:Q5S007 (PMID:22012985)
GO_REF:0000107 		RGD
Ensembl		 PMID:22012985 GO_REF:0000107 NCBI chr 1:209,845,827...209,875,561
Ensembl chr 1:209,845,835...209,875,457 		JBrowse link
G Trib3 tribbles pseudokinase 3 involved_in IMP PMID:28694771 UniProt PMID:28694771 RGD:14390049 NCBI chr 3:161,269,939...161,275,533
Ensembl chr 3:161,269,955...161,274,802 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:51,511,492...51,537,746 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr10:46,951,038...47,029,844
Ensembl chr10:46,951,038...47,029,844 		JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IEA
IBA 		GO_REF:0000002
GO_REF:0000033 		InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 8:66,888,820...66,895,380
Ensembl chr 8:66,888,788...66,895,379 		JBrowse link
G Usp10 ubiquitin specific peptidase 10 involved_in ISS
IBA
IEA
ISO 		GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:21962518) 		UniProt
GO_Central
Ensembl
RGD		 PMID:21962518 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr19:64,881,255...64,923,522
Ensembl chr19:64,881,315...64,923,519 		JBrowse link
G Usp13 ubiquitin specific peptidase 13 involved_in ISO (PMID:21962518) RGD PMID:21962518 NCBI chr 2:117,502,811...117,617,049
Ensembl chr 2:117,505,122...117,630,161 		JBrowse link
G Usp33 ubiquitin specific peptidase 33 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:243,938,958...243,988,424
Ensembl chr 2:243,943,175...243,988,424 		JBrowse link
G Uvrag UV radiation resistance associated involved_in ISO
IEA 		(PMID:16799551)
GO_REF:0000107 		RGD
Ensembl		 PMID:16799551 GO_REF:0000107 NCBI chr 1:162,596,514...162,854,348
Ensembl chr 1:162,596,515...162,854,348 		JBrowse link
G Vps29 VPS29 retromer complex component NOT|involved_in ISO (PMID:24603492) RGD PMID:24603492 NCBI chr12:39,869,688...39,878,732
Ensembl chr12:39,869,688...39,878,848 		JBrowse link
G Wac WW domain containing adaptor with coiled-coil involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:60,617,702...60,677,771
Ensembl chr17:60,617,544...60,679,267 		JBrowse link
G Wdr24 WD repeat domain 24 involved_in ISO
IEA 		(PMID:27166823)
GO_REF:0000107 		RGD
Ensembl		 PMID:27166823 GO_REF:0000107 NCBI chr10:15,346,835...15,353,384
Ensembl chr10:15,348,241...15,353,582 		JBrowse link
G Wdr41 WD repeat domain 41 involved_in ISO
IEA 		(PMID:27103069)
GO_REF:0000107
GO_REF:0000002 		RGD
Ensembl
InterPro		 PMID:27103069 GO_REF:0000002 GO_REF:0000107 NCBI chr 2:27,957,453...28,008,573
Ensembl chr 2:27,957,492...28,008,573 		JBrowse link
G Xbp1 X-box binding protein 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:24753614) 		UniProt
Ensembl
RGD		 PMID:24753614 GO_REF:0000024 GO_REF:0000107 NCBI chr14:84,604,623...84,609,707
Ensembl chr14:84,604,107...84,609,706 		JBrowse link
G Xpa XPA, DNA damage recognition and repair factor acts_upstream_of_or_within ISO MGI:1857939 (PMID:18443001) RGD PMID:18443001 NCBI chr 5:65,227,281...65,275,784
Ensembl chr 5:65,227,281...65,272,425 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO
IEA 		MGI:2180033 (PMID:18443001)
GO_REF:0000107 		RGD
Ensembl		 PMID:18443001 GO_REF:0000107 NCBI chr 5:139,912,395...139,945,532
Ensembl chr 5:139,913,671...139,945,532 		JBrowse link
regulation of autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htra2 HtrA serine peptidase 2 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 4:117,114,631...117,117,793
Ensembl chr 4:117,114,633...117,117,793 		JBrowse link
regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gfap glial fibrillary acidic protein involved_in ISO
IEA
IBA
IMP 		(PMID:20797626)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:20797626 PMID:20797626 GO_REF:0000033 GO_REF:0000107, RGD:10412296 NCBI chr10:88,352,987...88,361,661
Ensembl chr10:88,352,986...88,361,685 		JBrowse link
regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 involved_in ISO
IEA 		(PMID:10625637)
GO_REF:0000107 		RGD
Ensembl		 PMID:10625637 GO_REF:0000107 NCBI chr15:23,275,457...23,306,817
Ensembl chr15:23,275,457...23,306,815 		JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO
IEA 		(PMID:22198378)
GO_REF:0000107 		RGD
Ensembl		 PMID:22198378 GO_REF:0000107 NCBI chr 5:158,575,727...158,595,157
Ensembl chr 5:158,575,749...158,595,156 		JBrowse link
G Atp6v0a1 ATPase H+ transporting V0 subunit a1 involved_in ISO (PMID:22982048) RGD PMID:22982048 NCBI chr10:86,436,089...86,490,185
Ensembl chr10:86,436,141...86,490,181 		JBrowse link
G Becn1 beclin 1 involved_in ISO
IEA 		(PMID:10625637)
GO_REF:0000107 		RGD
Ensembl		 PMID:10625637 GO_REF:0000107 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,731,650...86,747,002 		JBrowse link
G Gba1 glucosylceramidase beta 1 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 2:176,902,141...176,916,015
Ensembl chr 2:176,907,154...176,916,985 		JBrowse link
G Hdac6 histone deacetylase 6 involved_in ISO
IEA 		(PMID:16192271)
GO_REF:0000107 		RGD
Ensembl		 PMID:16192271 GO_REF:0000107 NCBI chr  X:17,222,538...17,244,373
Ensembl chr  X:17,222,856...17,244,370 		JBrowse link
G Nat8b N-acetyltransferase 8B involved_in ISS
ISO 		GO_REF:0000024
(PMID:33846551) 		UniProt
RGD		 PMID:33846551 GO_REF:0000024 NCBI chr 4:119,916,909...119,923,544
Ensembl chr 4:119,915,525...119,921,887 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in ISO
IEA 		(PMID:10625637)
GO_REF:0000107 		RGD
Ensembl		 PMID:10625637 GO_REF:0000107 NCBI chr18:22,119,677...22,203,546
Ensembl chr18:22,119,792...22,203,539 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 involved_in ISO
IEA 		(PMID:10625637)
GO_REF:0000107 		RGD
Ensembl		 PMID:10625637 GO_REF:0000107 NCBI chr 8:115,146,660...115,195,326
Ensembl chr 8:115,146,687...115,195,326 		JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:23332761)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:23332761 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:125,036,945...125,109,010
Ensembl chr 5:125,042,179...125,108,324 		JBrowse link
G Tsc2 TSC complex subunit 2 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr10:14,125,679...14,160,317
Ensembl chr10:14,125,680...14,160,600 		JBrowse link
G Tsc2_v1 TSC complex subunit 2, variant 1 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117
G Tsc2_v2 TSC complex subunit 2, variant 2 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117
G Ubqln1 ubiquilin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:6,438,456...6,482,498
Ensembl chr17:6,444,124...6,482,499 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO
IBA 		(PMID:20529957)
GO_REF:0000033 		RGD
GO_Central		 PMID:20529957 GO_REF:0000033 NCBI chr  X:21,228,809...21,232,228
Ensembl chr  X:21,229,197...21,232,268 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO
IEA 		(PMID:20921139)
GO_REF:0000107 		RGD
Ensembl		 PMID:20921139 GO_REF:0000107 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:51,511,492...51,537,746 		JBrowse link
regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy10 adenylate cyclase 10 IMP RGD PMID:31172217 RGD:329403053 NCBI chr13:80,280,595...80,366,939
Ensembl chr13:80,284,295...80,366,926 		JBrowse link
G Bnip3l BCL2 interacting protein 3 like involved_in ISO
IEA 		UniProtKB:Q9Z2F7 (PMID:20200478)
GO_REF:0000107 		RGD
Ensembl		 PMID:20200478 GO_REF:0000107 NCBI chr15:45,350,081...45,373,213
Ensembl chr15:45,334,537...45,373,282 		JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr19:9,562,340...9,602,136
Ensembl chr19:9,562,321...9,602,136 		JBrowse link
G Cttn cortactin involved_in IEA
ISO 		GO_REF:0000107
(PMID:20457763) 		Ensembl
RGD		 PMID:20457763 GO_REF:0000107 NCBI chr 1:209,029,048...209,064,577
Ensembl chr 1:209,029,048...209,058,211 		JBrowse link
G Dnm1l dynamin 1-like involved_in ISO UniProtKB:Q9BXM7 (PMID:19279012) RGD PMID:19279012 NCBI chr11:98,084,049...98,135,663
Ensembl chr11:98,085,397...98,137,420 		JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in ISO
IEA 		(PMID:24912190)
GO_REF:0000107 		RGD
Ensembl		 PMID:24912190 GO_REF:0000107 NCBI chr 2:172,447,738...172,609,591
Ensembl chr 2:172,447,738...172,609,591 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 involved_in ISO
IEA 		(PMID:28381481), (PMID:31908024)
GO_REF:0000107 		RGD
Ensembl		 PMID:28381481 PMID:31908024 GO_REF:0000107 NCBI chr16:18,929,581...18,936,621
Ensembl chr16:18,929,582...18,936,543 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:73,606,860...73,618,612 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in ISO (PMID:24912190) RGD PMID:24912190 NCBI chr 1:89,943,669...89,953,514
Ensembl chr 1:89,943,669...89,953,593 		JBrowse link
G Parl presenilin associated, rhomboid-like involved_in ISO (PMID:21355049) RGD PMID:21355049 NCBI chr11:94,097,559...94,124,915
Ensembl chr11:94,097,934...94,148,287 		JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 involved_in ISO
IEA 		(PMID:24912190)
GO_REF:0000107 		RGD
Ensembl		 PMID:24912190 GO_REF:0000107 NCBI chr10:45,507,152...45,529,164
Ensembl chr10:45,507,152...45,529,164 		JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr 7:115,542,774...115,600,945
Ensembl chr 7:115,543,290...115,600,943 		JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr10:103,995,970...104,027,492
Ensembl chr10:103,995,970...104,023,450 		JBrowse link
G Vdac1 voltage-dependent anion channel 1 involved_in ISO
IEA 		(PMID:25470454)
GO_REF:0000107 		RGD
Ensembl		 PMID:25470454 GO_REF:0000107 NCBI chr10:37,029,377...37,060,542
Ensembl chr10:37,023,145...37,060,541 		JBrowse link
regulation of reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nat8b N-acetyltransferase 8B involved_in ISS
ISO 		GO_REF:0000024
(PMID:33846551) 		UniProt
RGD		 PMID:33846551 GO_REF:0000024 NCBI chr 4:119,916,909...119,923,544
Ensembl chr 4:119,915,525...119,921,887 		JBrowse link
reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:212,971,822...212,991,505
Ensembl chr 1:212,971,844...212,991,528 		JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:130,286,979...130,357,109
Ensembl chr 6:130,286,986...130,357,109 		JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:84,126,071...84,136,666 		JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:11,678,548...11,686,097
Ensembl chr 4:11,678,299...11,686,079 		JBrowse link
G Bnip3 BCL2 interacting protein 3 involved_in ISO
IEA 		(PMID:22505714)
GO_REF:0000107 		RGD
Ensembl		 PMID:22505714 GO_REF:0000107 NCBI chr 1:203,137,778...203,154,962
Ensembl chr 1:203,137,778...203,154,962 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO
IEA 		(PMID:32160526)
GO_REF:0000107 		RGD
Ensembl		 PMID:32160526 GO_REF:0000107 NCBI chr 3:138,315,006...138,336,691
Ensembl chr 3:138,315,282...138,335,766 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2176173|MGI:3526069 (PMID:31006538) 		GO_Central
Ensembl
RGD		 PMID:31006538 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:17,948,522...18,012,434
Ensembl chr 5:17,948,522...18,012,434 		JBrowse link
G Retreg1 reticulophagy regulator 1 involved_in
acts_upstream_of_or_within 		ISS
ISO
IBA
IEA 		GO_REF:0000024
(PMID:26040720)
(PMID:34338405)
GO_REF:0000033
GO_REF:0000002
(PMID:26040720), (PMID:31930741) 		GO_Central
RGD
InterPro		 PMID:26040720 PMID:31930741 PMID:34338405 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 NCBI chr 2:78,045,435...78,205,316
Ensembl chr 2:78,066,031...78,225,356 		JBrowse link
G Retreg2 reticulophagy regulator family member 2 acts_upstream_of_or_within ISO
IEA 		(PMID:34338405)
GO_REF:0000107 		RGD
Ensembl		 PMID:34338405 GO_REF:0000107 NCBI chr 9:84,088,935...84,095,072
Ensembl chr 9:84,088,964...84,094,837 		JBrowse link
G Retreg3 reticulophagy regulator family member 3 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:33826365)
GO_REF:0000107
GO_REF:0000002
(PMID:34338405) 		RGD
Ensembl
InterPro		 PMID:33826365 PMID:34338405 GO_REF:0000002 GO_REF:0000107 NCBI chr10:86,529,048...86,552,873
Ensembl chr10:86,529,055...86,552,990 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:79,478,804...79,608,118
Ensembl chr 5:79,478,912...79,607,052 		JBrowse link
G Snx7 sorting nexin 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:208,528,041...208,612,597
Ensembl chr 2:208,528,049...208,613,075 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISS
IEA
ISO
IBA 		GO_REF:0000024
GO_REF:0000107
(PMID:29056340)
GO_REF:0000033 		UniProt
Ensembl
RGD
GO_Central		 PMID:29056340 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr18:27,606,196...27,612,544
Ensembl chr18:27,606,196...27,611,947 		JBrowse link
G Tex264 testis expressed 264 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:31006537), (PMID:31006538)
GO_REF:0000107
GO_REF:0000033
(PMID:31006538) 		RGD
Ensembl
GO_Central		 PMID:31006537 PMID:31006538 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:116,174,517...116,201,578
Ensembl chr 8:116,174,518...116,201,667 		JBrowse link
G Uba5 ubiquitin-like modifier activating enzyme 5 involved_in ISO
IEA
ISS 		(PMID:32160526)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:32160526 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:113,544,037...113,559,711
Ensembl chr 8:113,544,037...113,559,711 		JBrowse link
G Ufc1 ubiquitin-fold modifier conjugating enzyme 1 involved_in ISS
IEA
IBA
ISO 		GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
(PMID:32160526) 		UniProt
Ensembl
GO_Central
RGD		 PMID:32160526 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:86,241,779...86,280,513
Ensembl chr13:86,241,779...86,248,522 		JBrowse link
G Ufl1 Ufm1-specific ligase 1 involved_in ISO
IEA
IBA
ISS 		(PMID:32160526)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024 		RGD
Ensembl
GO_Central
UniProt		 PMID:32160526 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:43,759,271...43,791,682
Ensembl chr 5:43,758,098...43,791,682 		JBrowse link
G Ufm1 ubiquitin-fold modifier 1 involved_in ISS
IEA
IBA
ISO 		GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
(PMID:32160526) 		UniProt
Ensembl
GO_Central
RGD		 PMID:32160526 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:140,119,722...140,127,866
Ensembl chr 2:140,119,725...140,127,866 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:51,511,492...51,537,746 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:46,951,038...47,029,844
Ensembl chr10:46,951,038...47,029,844 		JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:66,888,820...66,895,380
Ensembl chr 8:66,888,788...66,895,379 		JBrowse link
ribophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Armc3 armadillo repeat containing 3 involved_in ISO (PMID:34428398) RGD PMID:34428398 NCBI chr17:86,722,436...86,825,899
Ensembl chr17:86,722,441...86,825,899 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:17,948,522...18,012,434
Ensembl chr 5:17,948,522...18,012,434 		JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2 interacting protein 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:203,137,778...203,154,962
Ensembl chr 1:203,137,778...203,154,962 		JBrowse link
G Irgq immunity-related GTPase Q involved_in ISO (PMID:39481378) RGD PMID:39481378 NCBI chr 1:89,251,846...89,259,799
Ensembl chr 1:89,239,205...89,259,799 		JBrowse link
G Retreg1 reticulophagy regulator 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:78,045,435...78,205,316
Ensembl chr 2:78,066,031...78,225,356 		JBrowse link
G Retreg2 reticulophagy regulator family member 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:84,088,935...84,095,072
Ensembl chr 9:84,088,964...84,094,837 		JBrowse link
G Retreg3 reticulophagy regulator family member 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:86,529,048...86,552,873
Ensembl chr10:86,529,055...86,552,990 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO
IEA 		(PMID:22020285)
GO_REF:0000107 		RGD
Ensembl		 PMID:22020285 GO_REF:0000107 NCBI chr12:14,748,717...14,840,273
Ensembl chr12:14,749,043...14,840,273 		JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO
IEA 		MGI:6356543 (PMID:20810658), (PMID:27358407)
GO_REF:0000107 		RGD
Ensembl		 PMID:20810658 PMID:27358407 GO_REF:0000107 NCBI chr14:15,754,769...15,758,174
Ensembl chr14:15,754,644...15,761,659 		JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO
IEA 		(PMID:23023224)
GO_REF:0000107 		RGD
Ensembl		 PMID:23023224 GO_REF:0000107 NCBI chr19:13,411,227...13,446,129
Ensembl chr19:13,411,157...13,446,110 		JBrowse link
type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac6 histone deacetylase 6 involved_in ISO
IEA 		UniProtKB:Q9JK66|UniProtKB:Q9Z2V5 (PMID:20457763)
GO_REF:0000107 		RGD
Ensembl		 PMID:20457763 GO_REF:0000107 NCBI chr  X:17,222,538...17,244,373
Ensembl chr  X:17,222,856...17,244,370 		JBrowse link
G Mfn2 mitofusin 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:23620051) 		Ensembl
RGD		 PMID:23620051 GO_REF:0000107 NCBI chr 5:163,587,463...163,617,363
Ensembl chr 5:163,587,463...163,618,495 		JBrowse link
G Optn optineurin involved_in ISO
IEA 		(PMID:25294927)
GO_REF:0000107 		RGD
Ensembl		 PMID:25294927 GO_REF:0000107 NCBI chr17:78,118,847...78,169,543
Ensembl chr17:78,118,866...78,169,543 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO
IEA 		(PMID:19029340)
GO_REF:0000107 		RGD
Ensembl		 PMID:19029340 GO_REF:0000107 NCBI chr 1:51,236,410...52,430,242
Ensembl chr 1:51,210,330...52,430,304 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:14,748,717...14,840,273
Ensembl chr12:14,749,043...14,840,273 		JBrowse link
G Timm23 translocase of inner mitochondrial membrane 23 involved_in ISS
ISO 		GO_REF:0000024
(PMID:37160114) 		UniProt
RGD		 PMID:37160114 GO_REF:0000024 NCBI chr16:7,416,590...7,442,681
Ensembl chr16:7,416,597...7,442,658
Ensembl chr 3:7,416,597...7,442,658
Ensembl chr 6:7,416,597...7,442,658 		JBrowse link
xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within ISO
IEA 		PR:Q80W47 (PMID:24954904)
GO_REF:0000107 		RGD
Ensembl		 PMID:24954904 GO_REF:0000107 NCBI chr 9:95,869,839...95,905,354
Ensembl chr 9:95,869,865...95,905,357 		JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 involved_in ISO (PMID:23022382), (PMID:25771791) RGD PMID:23022382 PMID:25771791 NCBI chr10:81,552,084...81,568,266 JBrowse link
G Lgals8 galectin 8 involved_in ISO
ISS 		(PMID:22246324), (PMID:28077878)
GO_REF:0000024 		RGD
GO_Central		 PMID:22246324 PMID:28077878 GO_REF:0000024 NCBI chr17:62,716,368...62,744,272
Ensembl chr17:62,719,828...62,744,482 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of ISO MGI:1346858 (PMID:22033934) RGD PMID:22033934 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:190,797,185...190,803,411 		JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 acts_upstream_of ISO
IEA 		MGI:2674231 (PMID:22033934)
GO_REF:0000107 		RGD
Ensembl		 PMID:22033934 GO_REF:0000107 NCBI chr 4:85,391,142...85,442,281
Ensembl chr 4:85,391,151...85,441,674 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 acts_upstream_of ISO MGI:3529594 (PMID:22033934) RGD PMID:22033934 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:34,555,832...34,722,846 		JBrowse link
G Ripk2 receptor-interacting serine-threonine kinase 2 acts_upstream_of ISO
IEA 		MGI:2660793 (PMID:22033934)
GO_REF:0000107 		RGD
Ensembl		 PMID:22033934 GO_REF:0000107 NCBI chr 5:34,428,573...34,459,808
Ensembl chr 5:34,428,573...34,459,663 		JBrowse link
G Rnf213 ring finger protein 213 involved_in ISO (PMID:34012115) RGD PMID:34012115 NCBI chr10:105,154,873...105,254,148
Ensembl chr10:105,157,904...105,254,148 		JBrowse link
G Tlr2 toll-like receptor 2 acts_upstream_of ISO MGI:2674036 (PMID:22033934) RGD PMID:22033934 NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:171,497,060...171,520,194 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO PR:Q8C0J2 (PMID:24954904) RGD PMID:24954904 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:17,024,878...17,071,406 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20668
    cellular process 19605
      process utilizing autophagic mechanism 604
        autophagy + 604
        cytoplasm to vacuole targeting by the Cvt pathway + 0
paths to the root