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ONTOLOGY REPORT - ANNOTATIONS

Term:process utilizing autophagic mechanism
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Accession:GO:0061919 term browser browse the term
Definition:A cellular process involving delivery of a portion of the cytoplasm to lysosomes or to the plant or fungal vacuole that does not involve direct transport through the endocytic or vacuolar protein sorting (Vps) pathways. This process typically leads to degradation of the cargo; however, it can also be used to deliver resident proteins, such as in the cytoplasm-to-vacuole targeting (Cvt) pathway.

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aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acbd5 acyl-CoA binding domain containing 5 NOT ISO (PMID:24535825) RGD PMID:24535825 NCBI chr17:89,882,465...89,923,982
Ensembl chr17:89,883,615...89,923,423 		JBrowse link
G Atg5 autophagy related 5 ISO
IEA		 (PMID:22982048)
GO_REF:0000107
(MGI:MGI:5751672|PMID:22982048)		 RGD
Ensembl		 PMID:22982048 GO_REF:0000107, MGI:MGI:5751672 NCBI chr20:49,301,783...49,393,147
Ensembl chr20:49,318,308...49,393,140 		JBrowse link
G Sqstm1 sequestosome 1 ISO
IBA
ISS		 UniProtKB:Q562E7 (PMID:28404643)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:28404643, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:35,704,728...35,716,316
Ensembl chr10:35,704,730...35,716,294 		JBrowse link
G Ubqln1 ubiquilin 1 IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:21143716)		 Ensembl
UniProt
RGD		 PMID:21143716 GO_REF:0000024, GO_REF:0000107 NCBI chr17:6,840,441...6,878,842
Ensembl chr17:6,840,463...6,878,844 		JBrowse link
G Wdfy3 WD repeat and FYVE domain containing 3 ISO (PMID:20168092), (PMID:20417604) RGD PMID:20168092, PMID:20417604 NCBI chr14:9,169,409...9,384,835
Ensembl chr14:9,141,512...9,381,870 		JBrowse link
G Wdr81 WD repeat domain 81 ISO
ISS		 (PMID:28404643)
GO_REF:0000024		 RGD
UniProt		 PMID:28404643 GO_REF:0000024 NCBI chr10:62,273,817...62,287,213
Ensembl chr10:62,273,800...62,287,189 		JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001519.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:49,290,112...49,844,547 JBrowse link
G AABR07048308.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:71,999,926...72,000,318 JBrowse link
G AABR07072668.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:59,991,111...59,991,590 JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 ISO (PMID:25215947) RGD PMID:25215947 NCBI chr 3:80,634,470...80,830,068
Ensembl chr 3:80,634,470...80,830,068 		JBrowse link
G Atg101 autophagy related 101 ISO
IBA		 (PMID:19597335)
PMID:21873635		 RGD PMID:19597335, PMID:21873635 RGD:13792537 NCBI chr 7:142,929,381...142,938,559
Ensembl chr 7:142,929,400...142,938,554 		JBrowse link
G Atg12 autophagy related 12 ISO
IBA		 (MGI:MGI:2137756|PMID:11266458)
PMID:21873635		 RGD PMID:11266458, PMID:21873635 MGI:MGI:2137756, RGD:13792537 NCBI chr18:40,721,799...40,732,143
Ensembl chr18:40,721,800...40,732,126 		JBrowse link
G Atg13 autophagy related 13 ISO
IBA		 (PMID:19211835)
PMID:21873635
(MGI:MGI:3849242|PMID:19258318)		 RGD PMID:19211835, PMID:19258318, PMID:21873635 MGI:MGI:3849242, RGD:13792537 NCBI chr 3:80,580,549...80,614,554
Ensembl chr 3:80,581,247...80,601,410 		JBrowse link
G Atg14 autophagy related 14 ISO
IBA		 (PMID:19270696)
PMID:21873635		 RGD PMID:19270696, PMID:21873635 RGD:13792537 NCBI chr15:24,343,418...24,374,776
Ensembl chr15:24,343,314...24,374,753 		JBrowse link
G Atg16l1 autophagy related 16-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:94,879,876...94,915,231
Ensembl chr 9:94,879,745...94,915,228 		JBrowse link
G Atg16l2 autophagy related 16-like 2 NOT IBA
ISO		 PMID:21873635
(MGI:MGI:6436405|PMID:22082872)		 RGD PMID:22082872, PMID:21873635 MGI:MGI:6436405, RGD:13792537 NCBI chr 1:166,401,271...166,415,078
Ensembl chr 1:166,401,271...166,413,564 		JBrowse link
G Atg2a autophagy related 2A ISO
IBA		 (PMID:28561066)
PMID:21873635		 RGD PMID:28561066, PMID:21873635 RGD:13792537 NCBI chr 1:221,612,584...221,632,291
Ensembl chr 1:221,612,584...221,632,267 		JBrowse link
G Atg2b autophagy related 2B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:129,449,451...129,519,599
Ensembl chr 6:129,449,449...129,509,720 		JBrowse link
G Atg3 autophagy related 3 ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(MGI:MGI:4835103|PMID:20723759), (MGI:MGI:4880808|PMID:21220506)		 UniProt
RGD		 PMID:20723759, PMID:21220506, PMID:21873635 GO_REF:0000024, MGI:MGI:4835103, MGI:MGI:4880808, RGD:13792537 NCBI chr11:60,585,192...60,613,706
Ensembl chr11:60,585,171...60,613,718 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase ISO (MGI:MGI:5630037|PMID:25578879) RGD PMID:25578879 MGI:MGI:5630037 NCBI chr 9:100,888,457...100,920,123
Ensembl chr 9:100,888,501...100,918,637 		JBrowse link
G Atg5 autophagy related 5 IMP
IBA
ISO		 PMID:21873635
(MGI:MGI:2137756|PMID:11266458), (MGI:MGI:5500861|PMID:23704209)		 RGD PMID:11266458, PMID:23704209, PMID:16420522, PMID:21873635 MGI:MGI:2137756, MGI:MGI:5500861, RGD:1643189, RGD:13792537 NCBI chr20:49,301,783...49,393,147
Ensembl chr20:49,318,308...49,393,140 		JBrowse link
G Atg7 autophagy related 7 ISO
IBA		 (MGI:MGI:4420830|PMID:20080761), (MGI:MGI:5500861|PMID:23704209)
PMID:21873635		 RGD PMID:20080761, PMID:23704209, PMID:21873635 MGI:MGI:4420830, MGI:MGI:5500861, RGD:13792537 NCBI chr 4:146,570,113...146,777,093
Ensembl chr 4:146,598,413...146,777,124 		JBrowse link
G Atg9a autophagy related 9A ISO
IBA		 (PMID:15755735), (PMID:22456507)
PMID:21873635
MGI:MGI:4417824 (MGI:MGI:5494547|PMID:22456507), (MGI:MGI:5509287|PMID:23402761)		 RGD PMID:15755735, PMID:22456507, PMID:23402761, PMID:21873635 MGI:MGI:5494547, MGI:MGI:5509287, RGD:13792537 NCBI chr 9:82,382,800...82,393,429
Ensembl chr 9:82,382,800...82,393,382 		JBrowse link
G Atg9b autophagy related 9B ISO
IBA		 (PMID:15755735)
PMID:21873635		 RGD PMID:15755735, PMID:21873635 RGD:13792537 NCBI chr 4:7,314,369...7,322,095
Ensembl chr 4:7,314,369...7,321,029 		JBrowse link
G Bag3 BAG cochaperone 3 IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr 1:199,941,258...199,965,191
Ensembl chr 1:199,941,161...199,965,191 		JBrowse link
G Becn1 beclin 1 IMP
IBA
ISS
ISO		 PMID:21873635
GO_REF:0000024
(MGI:MGI:5619439|PMID:23332761)		 UniProt
RGD		 PMID:23332761, PMID:16420522, PMID:21873635 GO_REF:0000024, MGI:MGI:5619439, RGD:1643189, RGD:13792537 NCBI chr10:89,209,944...89,225,297
Ensembl chr10:89,209,940...89,225,297 		JBrowse link
G Becn2 beclin 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:93,971,720...93,974,467
Ensembl chr13:93,972,426...93,974,410 		JBrowse link
G Ctsd cathepsin D ISO (MGI:MGI:3057045|PMID:15452145) RGD PMID:15452145 MGI:MGI:3057045 NCBI chr 1:215,541,570...215,553,446
Ensembl chr 1:215,541,542...215,553,451 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 ISO
IEA		 (PMID:21072319)
GO_REF:0000107		 RGD
Ensembl		 PMID:21072319 GO_REF:0000107 NCBI chr 2:211,243,398...211,323,283
Ensembl chr 2:211,246,068...211,322,719 		JBrowse link
G Emc6 ER membrane protein complex subunit 6 ISO
IBA		 (PMID:23182941)
PMID:21873635		 RGD PMID:23182941, PMID:21873635 RGD:13792537 NCBI chr10:59,741,772...59,743,338
Ensembl chr10:59,741,772...59,743,315 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin ISO MGI:MGI:2182627 (MGI:MGI:5913112|PMID:24430976) RGD PMID:24430976 MGI:MGI:5913112 NCBI chr 1:5,448,958...5,571,512
Ensembl chr 1:5,448,958...5,571,512 		JBrowse link
G Gabarap GABA type A receptor-associated protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:56,601,288...56,604,223
Ensembl chr10:56,601,288...56,604,221 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:163,293,724...163,302,866
Ensembl chr 4:163,293,724...163,302,858 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:44,164,935...44,175,771
Ensembl chr19:44,164,935...44,175,770 		JBrowse link
G Irgm immunity-related GTPase M ISO (PMID:16888103)
(MGI:MGI:3656111|PMID:16888103)		 RGD PMID:16888103 MGI:MGI:3656111 NCBI chr10:34,213,885...34,221,968
Ensembl chr10:34,213,936...34,221,928 		JBrowse link
G LOC100359937 GABA(A) receptor-associated protein-like 2-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:95,943,674...95,944,604
Ensembl chr19:44,164,935...44,175,770 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha IDA
IBA
ISO		 PMID:11060023
PMID:21873635
(PMID:24290141)		 RGD PMID:24290141, PMID:11060023, PMID:21873635 RGD:8554284, RGD:13792537 NCBI chr 3:150,801,289...150,802,935
Ensembl chr 3:150,801,289...150,802,935 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:53,635,449...53,643,970
Ensembl chr19:53,629,779...53,646,058 		JBrowse link
G Map1lc3b2 microtubule-associated protein 1 light chain 3 beta 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,864,144...75,874,567
Ensembl chr16:75,873,881...75,874,519 		JBrowse link
G Nsfl1c NSFL1 cofactor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:146,980,923...147,005,478
Ensembl chr 3:146,980,923...147,005,439 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 6:137,824,136...137,889,144
Ensembl chr 6:137,824,213...137,887,418 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 IMP
IBA
ISO		 PMID:21873635
(MGI:MGI:5565574|PMID:24098492)		 RGD PMID:24098492, PMID:12453151, PMID:21873635 MGI:MGI:5565574, RGD:2303129, RGD:13792537 NCBI chr18:22,964,121...23,047,896
Ensembl chr18:22,964,210...23,047,895 		JBrowse link
G Psen1 presenilin 1 ISO MGI:MGI:2149116 (MGI:MGI:3057045|PMID:15452145) RGD PMID:15452145 MGI:MGI:3057045 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798 		JBrowse link
G Rab19 RAB19, member RAS oncogene family IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:67,166,412...67,176,141
Ensembl chr 4:67,165,883...67,176,363 		JBrowse link
G Rab1a RAB1A, member RAS oncogene family ISO
IBA
ISS		 (PMID:22939626)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:22939626, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr14:104,475,082...104,500,176
Ensembl chr14:104,475,082...104,501,020 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:220,483,529...220,491,469
Ensembl chr 1:220,480,834...220,491,469 		JBrowse link
G Rab23 RAB23, member RAS oncogene family ISO
IBA		 (PMID:22452336)
PMID:21873635		 RGD PMID:22452336, PMID:21873635 RGD:13792537 NCBI chr 9:38,469,784...38,496,185
Ensembl chr 9:38,470,298...38,495,176 		JBrowse link
G Rab33b RAB33B, member RAS oncogene family ISO (MGI:MGI:5447922|PMID:18448665) RGD PMID:18448665 MGI:MGI:5447922 NCBI chr 2:140,541,619...140,552,220
Ensembl chr 2:140,541,619...140,552,220 		JBrowse link
G Rab43 RAB43, member RAS oncogene family IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:119,695,012...119,714,490
Ensembl chr 4:119,695,013...119,714,302 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family ISO (PMID:19956673) RGD PMID:19956673 NCBI chr 4:119,910,461...119,963,065
Ensembl chr 4:119,910,478...119,959,173 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 ISO
IBA		 (MGI:MGI:3849242|PMID:19258318)
PMID:21873635		 RGD PMID:19258318, PMID:21873635 MGI:MGI:3849242, RGD:13792537 NCBI chr 5:13,033,918...13,097,369
Ensembl chr 5:13,033,918...13,097,341 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 ISO
IBA		 (PMID:26416964)
PMID:21873635		 RGD PMID:26416964, PMID:21873635 RGD:13792537 NCBI chr 9:81,401,080...81,422,016
Ensembl chr 9:81,402,124...81,421,990 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(MGI:MGI:6305034|PMID:30568238)
(PMID:30568238), (PMID:30842662)		 UniProt
RGD		 PMID:30568238, PMID:30842662, PMID:21873635 GO_REF:0000024, MGI:MGI:6305034, RGD:13792537 NCBI chr18:28,529,537...28,535,828
Ensembl chr18:28,529,576...28,535,828 		JBrowse link
G Stx12 syntaxin 12 ISO
IEA		 (PMID:24095276)
GO_REF:0000107		 RGD
Ensembl		 PMID:24095276 GO_REF:0000107 NCBI chr 5:151,044,050...151,072,893
Ensembl chr 5:151,044,329...151,072,904 		JBrowse link
G Synpo2 synaptopodin 2 IMP PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chr 2:227,255,243...227,411,924
Ensembl chr 2:227,255,902...227,411,964 		JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 ISO (MGI:MGI:6296816|PMID:23908015) RGD PMID:23908015 MGI:MGI:6296816 NCBI chr 1:219,126,687...219,139,466
Ensembl chr 1:219,127,602...219,139,464 		JBrowse link
G Tmem41b transmembrane protein 41B ISO
ISS		 (PMID:30093494), (PMID:30126924), (PMID:30933966)
GO_REF:0000024		 RGD
UniProt		 PMID:30093494, PMID:30126924, PMID:30933966 GO_REF:0000024 NCBI chr 1:174,605,833...174,620,192
Ensembl chr 1:174,605,834...174,620,064 		JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:24,402,895...24,419,651
Ensembl chr 5:24,410,863...24,416,888 		JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 ISO
IBA
ISS
IEA		 (PMID:19056683)
PMID:21873635
GO_REF:0000024
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:19056683, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 3:150,910,398...150,918,525
Ensembl chr 3:150,910,398...150,918,525 		JBrowse link
G Trappc8 trafficking protein particle complex 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:15,298,673...15,375,034
Ensembl chr18:15,298,978...15,375,031 		JBrowse link
G Ubqln1 ubiquilin 1 ISO
IBA
IEA		 (PMID:20529957)
PMID:21873635
GO_REF:0000107		 RGD
Ensembl		 PMID:20529957, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr17:6,840,441...6,878,842
Ensembl chr17:6,840,463...6,878,844 		JBrowse link
G Ubqln2 ubiquilin 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:18,723,313...18,726,732
Ensembl chr  X:18,723,341...18,726,732 		JBrowse link
G Ubxn2a UBX domain protein 2A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:28,969,471...28,997,987
Ensembl chr 6:28,973,025...28,994,519 		JBrowse link
G Ubxn2b UBX domain protein 2B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:19,285,368...19,314,199
Ensembl chr 5:19,284,548...19,311,088 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO (MGI:MGI:3849242|PMID:19258318) RGD PMID:19258318 MGI:MGI:3849242 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702 		JBrowse link
G Vmp1 vacuole membrane protein 1 ISS
ISO		 GO_REF:0000024
(PMID:30093494), (PMID:30933966)		 UniProt
RGD		 PMID:30093494, PMID:30933966 GO_REF:0000024 NCBI chr10:73,901,988...74,001,900
Ensembl chr10:73,902,837...74,001,895 		JBrowse link
G Wdr45 WD repeat domain 45 ISS
IEA
IBA
ISO		 GO_REF:0000024
GO_REF:0000107
PMID:21873635
(PMID:28561066)		 UniProt
Ensembl
RGD		 PMID:28561066, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr  X:15,621,249...15,627,159
Ensembl chr  X:15,621,209...15,627,235 		JBrowse link
G Wdr45b WD repeat domain 45B ISO
IBA		 (PMID:28561066)
PMID:21873635		 RGD PMID:28561066, PMID:21873635 RGD:13792537 NCBI chr10:110,523,843...110,555,769
Ensembl chr10:110,525,749...110,555,761 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 ISO
IBA		 (PMID:28561066)
PMID:21873635		 RGD PMID:28561066, PMID:21873635 RGD:13792537 NCBI chr10:97,859,730...97,896,949
Ensembl chr10:97,859,727...97,896,525 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(PMID:20505359), (PMID:28561066)		 UniProt
RGD		 PMID:20505359, PMID:28561066, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr12:13,969,704...13,998,134
Ensembl chr12:13,969,586...13,998,172 		JBrowse link
autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO MGI:MGI:2388888 (MGI:MGI:3690270|PMID:16714284) RGD PMID:16714284 MGI:MGI:3690270 NCBI chr 1:197,986,384...197,999,726
Ensembl chr 1:197,986,385...197,997,664 		JBrowse link
G Epg5 ectopic P-granules autophagy protein 5 homolog ISO
IBA		 MGI:MGI:5505596 (MGI:MGI:5488852|PMID:23479740)
PMID:21873635		 RGD PMID:23479740, PMID:21873635 MGI:MGI:5488852, RGD:13792537 NCBI chr18:74,299,965...74,397,115
Ensembl chr18:74,299,931...74,395,547 		JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 ISO
IBA
ISS		 (MGI:MGI:5805578|PMID:27628032)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:27628032, PMID:21873635 GO_REF:0000024, MGI:MGI:5805578, RGD:13792537 NCBI chr  X:124,722,628...124,766,079
Ensembl chr  X:124,722,628...124,766,044 		JBrowse link
G Lix1 limb and CNS expressed 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:59,156,021...59,212,878
Ensembl chr 1:59,156,251...59,214,452 		JBrowse link
G Lix1l limb and CNS expressed 1 like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:198,726,110...198,751,987
Ensembl chr 2:198,726,118...198,751,985 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha ISO
IBA		 (PMID:28223137)
PMID:21873635		 RGD PMID:28223137, PMID:21873635 RGD:13792537 NCBI chr 3:150,801,289...150,802,935
Ensembl chr 3:150,801,289...150,802,935 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta ISO
IBA		 (PMID:28223137)
PMID:21873635		 RGD PMID:28223137, PMID:21873635 RGD:13792537 NCBI chr19:53,635,449...53,643,970
Ensembl chr19:53,629,779...53,646,058 		JBrowse link
G Map1lc3b2 microtubule-associated protein 1 light chain 3 beta 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,864,144...75,874,567
Ensembl chr16:75,873,881...75,874,519 		JBrowse link
G Mcoln1 mucolipin 1 ISO MGI:MGI:3794204 (MGI:MGI:4839416|PMID:20600908) RGD PMID:20600908 MGI:MGI:4839416 NCBI chr12:2,054,629...2,068,682
Ensembl chr12:2,054,680...2,068,682 		JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 ISO (MGI:MGI:6155546|PMID:29514215) RGD PMID:29514215 MGI:MGI:6155546 NCBI chr 2:127,706,618...127,784,129
Ensembl chr 2:127,699,761...127,781,003 		JBrowse link
G Rubcnl rubicon like autophagy enhancer ISO
IBA		 (PMID:28306502), (PMID:30704899)
PMID:21873635
(MGI:MGI:6282647|PMID:30704899)		 RGD PMID:28306502, PMID:30704899, PMID:21873635 MGI:MGI:6282647, RGD:13792537 NCBI chr15:57,065,512...57,109,197
Ensembl chr15:57,065,428...57,102,599 		JBrowse link
G Snap29 synaptosome associated protein 29 ISO
ISS		 (PMID:23217709)
GO_REF:0000024		 RGD
UniProt		 PMID:23217709 GO_REF:0000024 NCBI chr11:87,827,633...87,858,107
Ensembl chr11:87,827,651...87,858,107 		JBrowse link
G Snapin SNAP-associated protein ISO MGI:MGI:3608768 (MGI:MGI:4879078|PMID:20920792), (MGI:MGI:5504339|PMID:22797916) RGD PMID:20920792, PMID:22797916 MGI:MGI:4879078, MGI:MGI:5504339 NCBI chr 2:189,878,159...189,880,743
Ensembl chr 2:189,878,168...189,880,743 		JBrowse link
G Snx14 sorting nexin 14 ISO (PMID:25848753) RGD PMID:25848753 NCBI chr 8:96,018,943...96,088,405
Ensembl chr 8:96,023,445...96,088,405 		JBrowse link
G Stx17 syntaxin 17 ISS
ISO		 GO_REF:0000024
(PMID:23217709), (PMID:24554770), (PMID:28306502)		 UniProt
RGD		 PMID:23217709, PMID:24554770, PMID:28306502 GO_REF:0000024 NCBI chr 5:63,866,346...63,926,276
Ensembl chr 5:63,870,432...63,922,730 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 ISO
ISS		 (PMID:22342342)
GO_REF:0000024		 RGD
UniProt		 PMID:22342342 GO_REF:0000024 NCBI chr12:12,374,132...12,403,382
Ensembl chr12:12,374,790...12,402,552 		JBrowse link
G Ubqln1 ubiquilin 1 ISO
IEA		 (PMID:23459205)
GO_REF:0000107		 RGD
Ensembl		 PMID:23459205 GO_REF:0000107 NCBI chr17:6,840,441...6,878,842
Ensembl chr17:6,840,463...6,878,844 		JBrowse link
G Uvrag UV radiation resistance associated ISO (PMID:28306502) RGD PMID:28306502 NCBI chr 1:163,844,804...164,101,568
Ensembl chr 1:163,844,818...164,101,578 		JBrowse link
G Vamp7 vesicle-associated membrane protein 7 NOT ISO (PMID:23217709) RGD PMID:23217709 NCBI chr12:18,996,566...19,033,714
Ensembl chr12:18,996,591...19,030,381 		JBrowse link
G Vamp8 vesicle-associated membrane protein 8 ISO
ISS		 (PMID:23217709)
GO_REF:0000024		 RGD
UniProt		 PMID:23217709 GO_REF:0000024 NCBI chr 4:100,250,301...100,252,756
Ensembl chr 4:100,250,301...100,252,755 		JBrowse link
G Vcp valosin-containing protein ISO
IBA
ISS		 (PMID:20104022)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:20104022, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953 		JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog NOT ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 6:111,271,283...111,296,013
Ensembl chr 6:111,271,240...111,295,994 		JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 3:122,947,887...122,969,543
Ensembl chr 3:122,947,913...122,969,541 		JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes ISO (PMID:24554770), (PMID:25783203) RGD PMID:24554770, PMID:25783203 NCBI chr12:38,459,816...38,482,903
Ensembl chr12:38,459,832...38,484,512 		JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated NOT ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 1:142,060,955...142,083,955
Ensembl chr 1:142,060,955...142,083,953 		JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B NOT ISO (PMID:23217709) RGD PMID:23217709 NCBI chr 6:102,340,261...102,353,612
Ensembl chr 6:102,339,857...102,353,403 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 NOT ISO (PMID:20505359) RGD PMID:20505359 NCBI chr12:13,969,704...13,998,134
Ensembl chr12:13,969,586...13,998,172 		JBrowse link
autophagosome membrane docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 ISO (PMID:25686604) RGD PMID:25686604 NCBI chr15:24,343,418...24,374,776
Ensembl chr15:24,343,314...24,374,753 		JBrowse link
G Snap29 synaptosome associated protein 29 IEA
ISO		 GO_REF:0000107
(PMID:25686604)		 Ensembl
RGD		 PMID:25686604 GO_REF:0000107 NCBI chr11:87,827,633...87,858,107
Ensembl chr11:87,827,651...87,858,107 		JBrowse link
G Stx17 syntaxin 17 ISO (PMID:25686604) RGD PMID:25686604 NCBI chr 5:63,866,346...63,926,276
Ensembl chr 5:63,870,432...63,922,730 		JBrowse link
G Vamp8 vesicle-associated membrane protein 8 IEA
ISO		 GO_REF:0000107
(PMID:25686604)		 Ensembl
RGD		 PMID:25686604 GO_REF:0000107 NCBI chr 4:100,250,301...100,252,756
Ensembl chr 4:100,250,301...100,252,755 		JBrowse link
autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 ISO (PMID:22186024) RGD PMID:22186024 NCBI chr 5:159,512,208...159,531,631
Ensembl chr 5:159,512,285...159,531,637 		JBrowse link
G Gba glucosylceramidase beta ISO (MGI:MGI:5501380|PMID:23707074) RGD PMID:23707074 MGI:MGI:5501380 NCBI chr 2:188,511,781...188,522,602
Ensembl chr 2:188,516,582...188,522,601 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha ISO MGI:MGI:2685045 (MGI:MGI:5565574|PMID:24098492) RGD PMID:24098492 MGI:MGI:5565574 NCBI chr 1:185,210,922...185,326,314
Ensembl chr 1:185,210,922...185,326,314 		JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta ISO MGI:MGI:1203729 (MGI:MGI:5565574|PMID:24098492) RGD PMID:24098492 MGI:MGI:5565574 NCBI chr13:49,848,939...49,909,404
Ensembl chr13:49,850,189...49,911,202 		JBrowse link
autophagosome-endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rubcnl rubicon like autophagy enhancer ISO
IBA		 (PMID:28306502)
PMID:21873635		 RGD PMID:28306502, PMID:21873635 RGD:13792537 NCBI chr15:57,065,512...57,109,197
Ensembl chr15:57,065,428...57,102,599 		JBrowse link
autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 ISO (PMID:30538141)
(MGI:MGI:6273736|PMID:30538141)		 RGD PMID:30538141 MGI:MGI:6273736 NCBI chr 5:159,512,208...159,531,631
Ensembl chr 5:159,512,285...159,531,637 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO (MGI:MGI:5698740|PMID:26450516) RGD PMID:26450516 MGI:MGI:5698740 NCBI chr 1:197,986,384...197,999,726
Ensembl chr 1:197,986,385...197,997,664 		JBrowse link
G Rubcnl rubicon like autophagy enhancer ISO
IBA		 (PMID:28306502)
PMID:21873635		 RGD PMID:28306502, PMID:21873635 RGD:13792537 NCBI chr15:57,065,512...57,109,197
Ensembl chr15:57,065,428...57,102,599 		JBrowse link
autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07040864.1 IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr  X:112,358,748...112,402,262 JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 ISO
IBA		 MGI:MGI:3715977 (MGI:MGI:3715542|PMID:17589504)
PMID:21873635		 RGD PMID:17589504, PMID:21873635 MGI:MGI:3715542, RGD:13792537 NCBI chr 3:80,634,470...80,830,068
Ensembl chr 3:80,634,470...80,830,068 		JBrowse link
G Anxa7 annexin A7 ISO (PMID:24007983) RGD PMID:24007983 NCBI chr15:4,254,470...4,281,296
Ensembl chr15:4,254,499...4,281,287 		JBrowse link
G Arfip2 ADP-ribosylation factor interacting protein 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:170,464,995...170,471,138
Ensembl chr 1:170,466,395...170,471,076 		JBrowse link
G Arsa arylsulfatase A IDA RGD PMID:8037 RGD:1599235 NCBI chr 7:130,446,644...130,452,632
Ensembl chr 7:130,446,668...130,451,283 		JBrowse link
G Arsb arylsulfatase B IDA RGD PMID:8037 RGD:1599235 NCBI chr 2:23,385,154...23,543,028
Ensembl chr 2:23,385,183...23,544,963 		JBrowse link
G Atg10 autophagy related 10 ISO
IBA		 (PMID:15657430), (PMID:17256008)
PMID:21873635		 RGD PMID:15657430, PMID:17256008, PMID:21873635 RGD:13792537 NCBI chr 2:19,853,546...20,152,918
Ensembl chr 2:19,853,546...20,152,884 		JBrowse link
G Atg12 autophagy related 12 IMP RGD PMID:18059433 RGD:2301217 NCBI chr18:40,721,799...40,732,143
Ensembl chr18:40,721,800...40,732,126 		JBrowse link
G Atg14 autophagy related 14 ISO (MGI:MGI:4438180|PMID:19270696), (MGI:MGI:5619471|PMID:19270693) RGD PMID:19270693, PMID:19270696 MGI:MGI:4438180, MGI:MGI:5619471 NCBI chr15:24,343,418...24,374,776
Ensembl chr15:24,343,314...24,374,753 		JBrowse link
G Atg16l2 autophagy related 16-like 2 NOT ISO (MGI:MGI:6436405|PMID:22082872) RGD PMID:22082872 MGI:MGI:6436405 NCBI chr 1:166,401,271...166,415,078
Ensembl chr 1:166,401,271...166,413,564 		JBrowse link
G Atg3 autophagy related 3 IEP RGD PMID:17110912 RGD:1643237 NCBI chr11:60,585,192...60,613,706
Ensembl chr11:60,585,171...60,613,718 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase ISO (PMID:18387192) RGD PMID:18387192 NCBI chr 9:100,888,457...100,920,123
Ensembl chr 9:100,888,501...100,918,637 		JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:117,861,517...117,932,116
Ensembl chr 5:117,877,594...117,931,003 		JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:22,291,445...22,301,331
Ensembl chr 8:22,291,445...22,301,331 		JBrowse link
G Atg5 autophagy related 5 IMP
IEA
ISO
ISS		 GO_REF:0000043
(MGI:MGI:2137756|PMID:11266458), (MGI:MGI:5509101|PMID:23878245)
GO_REF:0000024
(PMID:26812546)		 UniProt
RGD		 PMID:11266458, PMID:23878245, PMID:26812546, PMID:18059433 GO_REF:0000024, GO_REF:0000043, MGI:MGI:2137756, MGI:MGI:5509101, RGD:2301217 NCBI chr20:49,301,783...49,393,147
Ensembl chr20:49,318,308...49,393,140 		JBrowse link
G Atg7 autophagy related 7 ISS
ISO		 GO_REF:0000024
MGI:MGI:2137515|MGI:MGI:2176052|MGI:MGI:2176073|MGI:MGI:3587769|MGI:MGI:3587771 (MGI:MGI:3587473|PMID:15866887), (MGI:MGI:3653078|PMID:16885219), (MGI:MGI:3711608|PMID:17450150), (MGI:MGI:3722981|PMID:17726112), (MGI:MGI:4420830|PMID:20080761), (MGI:MGI:4829568|PMID:20577052), (MGI:MGI:6208175|PMID:29937374)
(PMID:20543840), (PMID:24681637), (PMID:25327288)		 GO_Central
RGD
UniProt		 PMID:15866887, PMID:16885219, PMID:17450150, PMID:17726112, PMID:20080761, PMID:20543840, PMID:20577052, PMID:24681637, PMID:25327288, PMID:29937374 GO_REF:0000024, MGI:MGI:3587473, MGI:MGI:3653078, MGI:MGI:3711608, MGI:MGI:3722981, MGI:MGI:4420830, MGI:MGI:4829568, MGI:MGI:6208175 NCBI chr 4:146,570,113...146,777,093
Ensembl chr 4:146,598,413...146,777,124 		JBrowse link
G Atg9a autophagy related 9A ISO MGI:MGI:4417824 (MGI:MGI:4414713|PMID:19926846) RGD PMID:19926846 MGI:MGI:4414713 NCBI chr 9:82,382,800...82,393,429
Ensembl chr 9:82,382,800...82,393,382 		JBrowse link
G Atp13a2 ATPase cation transporting 13A2 ISO (PMID:27278822)
(MGI:MGI:5881999|PMID:27278822)		 RGD PMID:27278822 MGI:MGI:5881999 NCBI chr 5:159,512,208...159,531,631
Ensembl chr 5:159,512,285...159,531,637 		JBrowse link
G Becn1 beclin 1 IMP
ISO
ISS		 (PMID:23184933), (PMID:23629966), (PMID:24056303), (PMID:28747345)
(MGI:MGI:2385984|PMID:12372286), (MGI:MGI:3715542|PMID:17589504), (MGI:MGI:5490676|PMID:23629966), (MGI:MGI:5619437|PMID:23364696)
GO_REF:0000024		 RGD
GO_Central		 PMID:12372286, PMID:17589504, PMID:23184933, PMID:23364696, PMID:23629966, PMID:24056303, PMID:28747345, PMID:16697404, PMID:25238224 GO_REF:0000024, MGI:MGI:2385984, MGI:MGI:3715542, MGI:MGI:5490676, MGI:MGI:5619437, RGD:1643194, RGD:11558011 NCBI chr10:89,209,944...89,225,297
Ensembl chr10:89,209,940...89,225,297 		JBrowse link
G Becn2 beclin 2 ISO (PMID:23954414)
MGI:MGI:5550535 (MGI:MGI:5528919|PMID:23954414)		 RGD PMID:23954414 MGI:MGI:5528919 NCBI chr13:93,971,720...93,974,467
Ensembl chr13:93,972,426...93,974,410 		JBrowse link
G Chmp4b charged multivesicular body protein 4B ISO (PMID:24095276) RGD PMID:24095276 NCBI chr 3:150,188,275...150,227,453
Ensembl chr 3:150,188,455...150,227,405 		JBrowse link
G Cltc clathrin heavy chain IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:74,014,560...74,070,578
Ensembl chr10:74,014,562...74,070,266 		JBrowse link
G Ctsb cathepsin B IEP RGD PMID:18567942 RGD:2315511 NCBI chr15:46,316,741...46,337,613
Ensembl chr15:46,316,741...46,337,612 		JBrowse link
G Dap death-associated protein IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:84,275,884...84,328,998
Ensembl chr 2:84,275,884...84,328,998 		JBrowse link
G Dram2 DNA-damage regulated autophagy modulator 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:209,160,901...209,189,641
Ensembl chr 2:209,161,047...209,188,622 		JBrowse link
G Drd2 dopamine receptor D2 IDA RGD PMID:26649942 RGD:13506953 NCBI chr 8:53,678,777...53,743,643
Ensembl chr 8:53,678,777...53,743,642 		JBrowse link
G Drd3 dopamine receptor D3 IMP RGD PMID:26649942 RGD:13506953 NCBI chr11:61,819,102...61,883,223
Ensembl chr11:61,822,077...61,874,327 		JBrowse link
G Ei24 EI24, autophagy associated transmembrane protein ISO MGI:MGI:2176173|MGI:MGI:5475023 (MGI:MGI:5468390|PMID:23074225) RGD PMID:23074225 MGI:MGI:5468390 NCBI chr 8:39,254,883...39,271,238
Ensembl chr 8:39,254,889...39,266,959 		JBrowse link
G Epg5 ectopic P-granules autophagy protein 5 homolog ISO
IBA		 MGI:MGI:5505596 (MGI:MGI:5488852|PMID:23479740)
PMID:21873635		 RGD PMID:23479740, PMID:21873635 MGI:MGI:5488852, RGD:13792537 NCBI chr18:74,299,965...74,397,115
Ensembl chr18:74,299,931...74,395,547 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin ISO MGI:MGI:2182627 (MGI:MGI:5607479|PMID:24914213) RGD PMID:24914213 MGI:MGI:5607479 NCBI chr 1:5,448,958...5,571,512
Ensembl chr 1:5,448,958...5,571,512 		JBrowse link
G Fnbp1l formin binding protein 1-like IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:226,691,435...226,742,081
Ensembl chr 2:226,688,844...226,779,440 		JBrowse link
G Foxo1 forkhead box O1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:141,451,234...141,527,016
Ensembl chr 2:141,451,234...141,527,016 		JBrowse link
G Gba glucosylceramidase beta ISO (PMID:27378698)
(MGI:MGI:5817293|PMID:27378698)		 RGD PMID:27378698 MGI:MGI:5817293 NCBI chr 2:188,511,781...188,522,602
Ensembl chr 2:188,516,582...188,522,601 		JBrowse link
G Gramd1a GRAM domain containing 1A IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:89,563,982...89,590,406
Ensembl chr 1:89,563,976...89,590,490 		JBrowse link
G Hap1 huntingtin-associated protein 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:88,257,975...88,266,210
Ensembl chr10:88,257,976...88,266,210 		JBrowse link
G Hmgb1 high mobility group box 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237 		JBrowse link
G Itgb4 integrin subunit beta 4 IEA
ISO		 GO_REF:0000107
(PMID:24007983)		 Ensembl
RGD		 PMID:24007983 GO_REF:0000107 NCBI chr10:104,524,000...104,560,180
Ensembl chr10:104,523,996...104,561,078 		JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 ISO (MGI:MGI:3038873|PMID:12221139) RGD PMID:12221139 MGI:MGI:3038873 NCBI chr  X:124,722,628...124,766,079
Ensembl chr  X:124,722,628...124,766,044 		JBrowse link
G Lix1 limb and CNS expressed 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:59,156,021...59,212,878
Ensembl chr 1:59,156,251...59,214,452 		JBrowse link
G Lix1l limb and CNS expressed 1 like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:198,726,110...198,751,987
Ensembl chr 2:198,726,118...198,751,985 		JBrowse link
G LOC690000 similar to CG3740-PA ISO (PMID:26136767) RGD PMID:26136767 NCBI chr 1:94,572,714...94,587,842
Ensembl chr 1:94,579,080...94,587,219 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha IDA RGD PMID:16420522 RGD:1643189 NCBI chr 3:150,801,289...150,802,935
Ensembl chr 3:150,801,289...150,802,935 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta ISO
IEA		 (PMID:23629966)
GO_REF:0000043
(MGI:MGI:5490676|PMID:23629966)		 RGD
UniProt		 PMID:23629966 GO_REF:0000043, MGI:MGI:5490676 NCBI chr19:53,635,449...53,643,970
Ensembl chr19:53,629,779...53,646,058 		JBrowse link
G Nhlrc1 NHL repeat containing E3 ubiquitin protein ligase 1 ISO MGI:MGI:3808349 (MGI:MGI:5607479|PMID:24914213) RGD PMID:24914213 MGI:MGI:5607479 NCBI chr17:18,059,382...18,060,572
Ensembl chr17:18,059,382...18,060,572 		JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 ISO UniProtKB:P10636 (PMID:19074461) RGD PMID:19074461 NCBI chr18:3,616,878...3,662,656
Ensembl chr18:3,616,878...3,662,683 		JBrowse link
G Nrbf2 nuclear receptor binding factor 2 IEA
IBA
ISO		 GO_REF:0000107
PMID:21873635
(MGI:MGI:5634877|PMID:24849286)
(PMID:24785657)		 Ensembl
RGD		 PMID:24785657, PMID:24849286, PMID:21873635 GO_REF:0000107, MGI:MGI:5634877, RGD:13792537 NCBI chr20:22,728,145...22,746,477
Ensembl chr20:22,728,208...22,746,474 		JBrowse link
G Optn optineurin IEA GO_REF:0000002
GO_REF:0000043		 InterPro
UniProt		 GO_REF:0000002, GO_REF:0000043 NCBI chr17:77,167,700...77,218,374
Ensembl chr17:77,167,740...77,218,389 		JBrowse link
G Park7 Parkinsonism associated deglycase IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:167,982,438...168,004,724
Ensembl chr 5:167,982,439...168,004,724 		JBrowse link
G Phf23 PHD finger protein 23 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:56,605,078...56,609,236
Ensembl chr10:56,605,140...56,609,233 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 ISO (PMID:25327288) RGD PMID:25327288 NCBI chr18:22,964,121...23,047,896
Ensembl chr18:22,964,210...23,047,895 		JBrowse link
G Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:107,275,849...107,381,088
Ensembl chr 8:107,275,725...107,380,933 		JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:91,451,890...91,500,675
Ensembl chr10:91,451,865...91,500,661 		JBrowse link
G Pmp22 peripheral myelin protein 22 ISO MGI:MGI:1856217|MGI:MGI:2447704 (MGI:MGI:3575390|PMID:14627652), (MGI:MGI:3701167|PMID:17174099), (MGI:MGI:5605930|PMID:25014022) RGD PMID:14627652, PMID:17174099, PMID:25014022 MGI:MGI:3575390, MGI:MGI:3701167, MGI:MGI:5605930 NCBI chr10:49,538,588...49,568,583
Ensembl chr10:49,538,588...49,568,583 		JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:54,857,688...54,893,404
Ensembl chr 2:54,857,688...54,893,404 		JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:124,568,845...124,642,569
Ensembl chr 5:124,574,079...124,642,569 		JBrowse link
G Psen1 presenilin 1 ISO MGI:MGI:1930934 (MGI:MGI:3044229|PMID:15123735) RGD PMID:15123735 MGI:MGI:3044229 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798 		JBrowse link
G Rab12 RAB12, member RAS oncogene family IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:114,683,985...114,709,613
Ensembl chr 9:114,684,039...114,709,546 		JBrowse link
G Rab1a RAB1A, member RAS oncogene family ISO
ISS		 (PMID:22939626)
GO_REF:0000024		 RGD
UniProt		 PMID:22939626 GO_REF:0000024 NCBI chr14:104,475,082...104,500,176
Ensembl chr14:104,475,082...104,501,020 		JBrowse link
G Rab39a RAB39A, member RAS oncogene family IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:58,275,984...58,292,995
Ensembl chr 8:58,272,098...58,293,102 		JBrowse link
G Rab8a RAB8A, member RAS oncogene family IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:19,355,047...19,376,776
Ensembl chr16:19,355,048...19,376,776 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 ISO MGI:MGI:2176173|MGI:MGI:3526069 (MGI:MGI:3796758|PMID:18443221), (MGI:MGI:6323456|PMID:31006538) RGD PMID:18443221, PMID:31006538 MGI:MGI:3796758, MGI:MGI:6323456 NCBI chr 5:13,033,918...13,097,369
Ensembl chr 5:13,033,918...13,097,341 		JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 IEA
IBA
ISS
ISO		 GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:24549040)		 Ensembl
UniProt
RGD		 PMID:24549040, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 5:50,666,444...50,691,523
Ensembl chr 5:50,668,040...50,684,409 		JBrowse link
G Rnf166 ring finger protein 166 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:55,290,563...55,300,403
Ensembl chr19:55,290,563...55,300,403 		JBrowse link
G Rnf185 ring finger protein 185 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:83,648,400...83,685,273
Ensembl chr14:83,648,402...83,685,273 		JBrowse link
G Rubcn rubicon autophagy regulator IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:71,150,506...71,199,254
Ensembl chr11:71,151,132...71,197,035 		JBrowse link
G S100a8 S100 calcium binding protein A8 ISO
ISS		 (PMID:19935772)
GO_REF:0000024		 RGD
UniProt		 PMID:19935772 GO_REF:0000024 NCBI chr 2:190,073,239...190,074,333
Ensembl chr 2:190,073,815...190,074,354 		JBrowse link
G S100a9 S100 calcium binding protein A9 IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:19935772)		 Ensembl
UniProt
RGD		 PMID:19935772 GO_REF:0000024, GO_REF:0000107 NCBI chr 2:190,097,436...190,100,209
Ensembl chr 2:190,097,554...190,100,276 		JBrowse link
G Sirt2 sirtuin 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:86,948,866...86,971,954
Ensembl chr 1:86,948,918...86,971,952 		JBrowse link
G Sqstm1 sequestosome 1 ISS
ISO		 GO_REF:0000024
(MGI:MGI:4819475|PMID:20421418), (MGI:MGI:5009358|PMID:20173742)
(PMID:17580304), (PMID:20452972)		 UniProt
RGD		 PMID:17580304, PMID:20173742, PMID:20421418, PMID:20452972 GO_REF:0000024, MGI:MGI:4819475, MGI:MGI:5009358 NCBI chr10:35,704,728...35,716,316
Ensembl chr10:35,704,730...35,716,294 		JBrowse link
G Srpx sushi-repeat-containing protein, X-linked ISO MGI:MGI:3706175 (MGI:MGI:3852261|PMID:19368996) RGD PMID:19368996 MGI:MGI:3852261 NCBI chr  X:14,146,618...14,220,756
Ensembl chr  X:14,150,038...14,220,662 		JBrowse link
G Stk11 serine/threonine kinase 11 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:12,440,751...12,457,513
Ensembl chr 7:12,440,751...12,457,513 		JBrowse link
G Syt11 synaptotagmin 11 ISO
ISS		 (PMID:27278822)
(MGI:MGI:5881999|PMID:27278822)
GO_REF:0000024		 RGD
UniProt		 PMID:27278822 GO_REF:0000024, MGI:MGI:5881999 NCBI chr 2:188,112,301...188,138,180
Ensembl chr 2:188,112,286...188,138,177 		JBrowse link
G Tbc1d5 TBC1 domain family, member 5 ISO (PMID:22354992) RGD PMID:22354992 NCBI chr 9:1,144,641...1,747,732
Ensembl chr 9:1,145,700...1,746,397 		JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 ISO (MGI:MGI:6296816|PMID:23908015) RGD PMID:23908015 MGI:MGI:6296816 NCBI chr 1:219,126,687...219,139,466
Ensembl chr 1:219,127,602...219,139,464 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 ISO
ISS		 (PMID:21575909)
GO_REF:0000024		 RGD
UniProt		 PMID:21575909 GO_REF:0000024 NCBI chr12:12,374,132...12,403,382
Ensembl chr12:12,374,790...12,402,552 		JBrowse link
G Tgfbrap1 transforming growth factor, beta receptor associated protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:49,852,560...49,902,943
Ensembl chr 9:49,852,560...49,902,943 		JBrowse link
G Tm9sf1 transmembrane 9 superfamily member 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:34,314,645...34,322,172
Ensembl chr15:34,314,656...34,322,115 		JBrowse link
G Tmbim6 transmembrane BAX inhibitor motif containing 6 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:141,039,433...141,070,269
Ensembl chr 7:141,034,982...141,069,989 		JBrowse link
G Tmem39a transmembrane protein 39a IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:64,723,181...64,752,514
Ensembl chr11:64,723,186...64,752,544 		JBrowse link
G Tollip toll interacting protein IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:214,823,993...214,844,861
Ensembl chr 1:214,823,978...214,844,858 		JBrowse link
G Tp53 tumor protein p53 ISO (PMID:23629966) RGD PMID:23629966 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449 		JBrowse link
G Trappc4 trafficking protein particle complex 4 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:31794024)		 UniProt
Ensembl
RGD		 PMID:31794024 GO_REF:0000024, GO_REF:0000107 NCBI chr 8:48,723,755...48,727,182
Ensembl chr 8:48,723,191...48,727,154 		JBrowse link
G Trim17 tripartite motif-containing 17 IEA
ISO		 GO_REF:0000107
(PMID:25127057)		 Ensembl
RGD		 PMID:25127057 GO_REF:0000107 NCBI chr10:45,307,007...45,314,823
Ensembl chr10:45,297,937...45,314,837 		JBrowse link
G Trim30c tripartite motif-containing 30C IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:169,492,786...169,514,195
Ensembl chr 1:169,491,920...169,513,537 		JBrowse link
G Trim5 tripartite motif-containing 5 ISO (PMID:25127057) RGD PMID:25127057 NCBI chr 1:169,446,774...169,463,760
Ensembl chr 1:169,446,805...169,534,896 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO (PMID:17595159), (PMID:18936157)
(MGI:MGI:3796758|PMID:18443221), (MGI:MGI:5285135|PMID:21258367)		 RGD PMID:17595159, PMID:18443221, PMID:18936157, PMID:21258367 MGI:MGI:3796758, MGI:MGI:5285135 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 ISO (PMID:18936157)
(MGI:MGI:3796758|PMID:18443221)		 RGD PMID:18443221, PMID:18936157 MGI:MGI:3796758 NCBI chr10:48,050,079...48,129,377
Ensembl chr10:48,050,803...48,129,377 		JBrowse link
G Ulk3 unc-51 like kinase 3 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:62,368,548...62,375,229
Ensembl chr 8:62,368,998...62,374,504 		JBrowse link
G Umod uromodulin ISO
IEA		 (MGI:MGI:6107740|PMID:28990932)
GO_REF:0000107		 RGD
Ensembl		 PMID:28990932 GO_REF:0000107, MGI:MGI:6107740 NCBI chr 1:189,186,027...189,199,939
Ensembl chr 1:189,186,026...189,199,376 		JBrowse link
G Usp10 ubiquitin specific peptidase 10 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:52,566,274...52,608,820
Ensembl chr19:52,566,607...52,608,817 		JBrowse link
G Uvrag UV radiation resistance associated ISO (PMID:24056303) RGD PMID:24056303 NCBI chr 1:163,844,804...164,101,568
Ensembl chr 1:163,844,818...164,101,578 		JBrowse link
G Vcp valosin-containing protein ISS
ISO		 GO_REF:0000024
(PMID:20104022), (PMID:25125609)		 UniProt
RGD		 PMID:20104022, PMID:25125609 GO_REF:0000024 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953 		JBrowse link
G Vmp1 vacuole membrane protein 1 IDA
IBA
ISO		 PMID:17940279
PMID:21873635
(MGI:MGI:3768504|PMID:17940279)		 RGD PMID:17940279, PMID:17940279, PMID:21873635 MGI:MGI:3768504, RGD:8554414, RGD:13792537 NCBI chr10:73,901,988...74,001,900
Ensembl chr10:73,902,837...74,001,895 		JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:48,677,492...48,692,295
Ensembl chr 8:48,677,492...48,692,295 		JBrowse link
G Vps13a vacuolar protein sorting 13 homolog A ISO (PMID:25996471) RGD PMID:25996471 NCBI chr 1:235,352,513...235,813,597
Ensembl chr 1:235,653,121...235,813,030 		JBrowse link
G Vps39 VPS39 subunit of HOPS complex ISO
IBA		 (PMID:24554770)
PMID:21873635		 RGD PMID:24554770, PMID:21873635 RGD:13792537 NCBI chr 3:112,087,213...112,125,307
Ensembl chr 3:112,087,677...112,125,318 		JBrowse link
G Vps51 VPS51 subunit of GARP complex ISO
IEA		 (PMID:20685960)
GO_REF:0000107		 RGD
Ensembl		 PMID:20685960 GO_REF:0000107 Ensembl chr 1:221,430,648...221,440,467 JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A ISO
IEA		 (PMID:24095276)
GO_REF:0000107		 RGD
Ensembl		 PMID:24095276 GO_REF:0000107 NCBI chr 1:276,310,072...276,508,635
Ensembl chr 1:276,309,927...276,490,602 		JBrowse link
G Wdr45 WD repeat domain 45 ISO
ISS		 (PMID:23435086)
GO_REF:0000024		 RGD
UniProt		 PMID:23435086 GO_REF:0000024 NCBI chr  X:15,621,249...15,627,159
Ensembl chr  X:15,621,209...15,627,235 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 ISO (PMID:15602573), (PMID:17618624) RGD PMID:15602573, PMID:17618624 NCBI chr10:97,859,730...97,896,949
Ensembl chr10:97,859,727...97,896,525 		JBrowse link
autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07048308.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:71,999,926...72,000,318 JBrowse link
G AABR07072668.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:59,991,111...59,991,590 JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 ISO UniProtKB:O60260|UniProtKB:Q99MQ3 (PMID:25215947) RGD PMID:25215947 NCBI chr 3:80,634,470...80,830,068
Ensembl chr 3:80,634,470...80,830,068 		JBrowse link
G Atg12 autophagy related 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:40,721,799...40,732,143
Ensembl chr18:40,721,800...40,732,126 		JBrowse link
G Atg13 autophagy related 13 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:80,580,549...80,614,554
Ensembl chr 3:80,581,247...80,601,410 		JBrowse link
G Atg2a autophagy related 2A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:221,612,584...221,632,291
Ensembl chr 1:221,612,584...221,632,267 		JBrowse link
G Atg2b autophagy related 2B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:129,449,451...129,519,599
Ensembl chr 6:129,449,449...129,509,720 		JBrowse link
G Atg3 autophagy related 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:60,585,192...60,613,706
Ensembl chr11:60,585,171...60,613,718 		JBrowse link
G Atg5 autophagy related 5 ISO
IBA
IEA		 (MGI:MGI:3796473|PMID:18281291)
PMID:21873635
GO_REF:0000107		 RGD
Ensembl		 PMID:18281291, PMID:21873635 GO_REF:0000107, MGI:MGI:3796473, RGD:13792537 NCBI chr20:49,301,783...49,393,147
Ensembl chr20:49,318,308...49,393,140 		JBrowse link
G Atg7 autophagy related 7 ISO
IBA		 UniProtKB:Q9BXM7 (PMID:19279012)
PMID:21873635
(MGI:MGI:4420830|PMID:20080761), (MGI:MGI:5529208|PMID:23981124)		 RGD PMID:19279012, PMID:20080761, PMID:23981124, PMID:21873635 MGI:MGI:4420830, MGI:MGI:5529208, RGD:13792537 NCBI chr 4:146,570,113...146,777,093
Ensembl chr 4:146,598,413...146,777,124 		JBrowse link
G Atg9a autophagy related 9A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:82,382,800...82,393,429
Ensembl chr 9:82,382,800...82,393,382 		JBrowse link
G Atg9b autophagy related 9B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:7,314,369...7,322,095
Ensembl chr 4:7,314,369...7,321,029 		JBrowse link
G Becn1 beclin 1 ISO (MGI:MGI:3796473|PMID:18281291)
(PMID:25215947)		 RGD PMID:18281291, PMID:25215947 MGI:MGI:3796473 NCBI chr10:89,209,944...89,225,297
Ensembl chr10:89,209,940...89,225,297 		JBrowse link
G Capn10 calpain 10 IMP RGD PMID:22568896 RGD:7247732 NCBI chr 9:100,104,000...100,112,833
Ensembl chr 9:100,104,000...100,112,832 		JBrowse link
G Cdkn2a cyclin-dependent kinase inhibitor 2A ISO (PMID:25217637) RGD PMID:25217637 NCBI chr 5:107,823,323...107,832,405
Ensembl chr 5:107,823,330...107,841,175 		JBrowse link
G Cisd2 CDGSH iron sulfur domain 2 ISO
IBA		 (MGI:MGI:3845412|PMID:19451219)
PMID:21873635		 RGD PMID:19451219, PMID:21873635 MGI:MGI:3845412, RGD:13792537 NCBI chr 2:240,586,754...240,611,560
Ensembl chr 2:240,586,754...240,611,560 		JBrowse link
G Ctsk cathepsin K ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr 2:196,655,469...196,666,447
Ensembl chr 2:196,655,469...196,666,446 		JBrowse link
G Fbxo7 F-box protein 7 ISO
ISS		 (PMID:23933751)
GO_REF:0000024		 RGD
UniProt		 PMID:23933751 GO_REF:0000024 NCBI chr 7:23,815,246...23,843,505
Ensembl chr 7:23,815,245...23,843,634 		JBrowse link
G Fis1 fission, mitochondrial 1 ISO
IBA		 (PMID:18515060)
PMID:21873635		 RGD PMID:18515060, PMID:21873635 RGD:13792537 NCBI chr12:22,750,485...22,765,324
Ensembl chr12:22,750,485...22,765,308 		JBrowse link
G Fundc1 FUN14 domain containing 1 ISO
IBA
ISS		 UniProtKB:Q9H492 (PMID:22267086)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:22267086, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr  X:5,549,468...5,566,125
Ensembl chr  X:5,549,419...5,566,127 		JBrowse link
G Fundc2 FUN14 domain containing 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:401,878...407,954
Ensembl chr18:402,295...407,954 		JBrowse link
G Gabarap GABA type A receptor-associated protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:56,601,288...56,604,223
Ensembl chr10:56,601,288...56,604,221 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:163,293,724...163,302,866
Ensembl chr 4:163,293,724...163,302,858 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:44,164,935...44,175,771
Ensembl chr19:44,164,935...44,175,770 		JBrowse link
G LOC100359937 GABA(A) receptor-associated protein-like 2-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:95,943,674...95,944,604
Ensembl chr19:44,164,935...44,175,770 		JBrowse link
G LOC365778 similar to RIKEN cDNA 1700034I23 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:127,776,103...127,778,350
Ensembl chr 2:127,770,767...127,778,350 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha ISO
IBA		 UniProtKB:Q8IVP5 (PMID:22267086)
PMID:21873635		 RGD PMID:22267086, PMID:21873635 RGD:13792537 NCBI chr 3:150,801,289...150,802,935
Ensembl chr 3:150,801,289...150,802,935 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta ISO
IBA		 UniProtKB:Q9BXM7 (PMID:19279012)
PMID:21873635		 RGD PMID:19279012, PMID:21873635 RGD:13792537 NCBI chr19:53,635,449...53,643,970
Ensembl chr19:53,629,779...53,646,058 		JBrowse link
G Map1lc3b2 microtubule-associated protein 1 light chain 3 beta 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,864,144...75,874,567
Ensembl chr16:75,873,881...75,874,519 		JBrowse link
G Pink1 PTEN induced kinase 1 ISO
IBA		 (PMID:20798600), (PMID:23933751), (PMID:24896179)
PMID:21873635		 RGD PMID:20798600, PMID:23933751, PMID:24896179, PMID:21873635 RGD:13792537 NCBI chr 5:156,677,146...156,689,258
Ensembl chr 5:156,677,146...156,689,415 		JBrowse link
G Ppargc1a PPARG coactivator 1 alpha IEP RGD PMID:19783904 RGD:10059673 NCBI chr14:63,095,291...63,190,688
Ensembl chr14:63,095,720...63,187,009 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase IDA
IBA
ISO
ISS		 PMID:20457763
PMID:21873635
(PMID:19029340), (PMID:23933751), (PMID:24896179), (PMID:25621951)
GO_REF:0000024		 RGD
ParkinsonsUK-UCL
UniProt		 PMID:19029340, PMID:23933751, PMID:24896179, PMID:25621951, PMID:20457763, PMID:21873635 GO_REF:0000024, RGD:10047224, RGD:13792537 NCBI chr 1:48,880,015...50,069,998 JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:13,033,918...13,097,369
Ensembl chr 5:13,033,918...13,097,341 		JBrowse link
G Slc25a46 solute carrier family 25, member 46 ISO MGI:MGI:6358090 (MGI:MGI:5921109|PMID:28934388) RGD PMID:28934388 MGI:MGI:5921109 NCBI chr18:24,369,104...24,397,412
Ensembl chr18:24,369,125...24,397,551 		JBrowse link
G Usp30 ubiquitin specific peptidase 30 ISO (PMID:24896179), (PMID:25621951) RGD PMID:24896179, PMID:25621951 NCBI chr12:48,262,663...48,316,580
Ensembl chr12:48,262,658...48,316,722 		JBrowse link
G Wdr45 WD repeat domain 45 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:15,621,249...15,627,159
Ensembl chr  X:15,621,209...15,627,235 		JBrowse link
G Wdr45b WD repeat domain 45B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:110,523,843...110,555,769
Ensembl chr10:110,525,749...110,555,761 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:97,859,730...97,896,949
Ensembl chr10:97,859,727...97,896,525 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:13,969,704...13,998,134
Ensembl chr12:13,969,586...13,998,172 		JBrowse link
autophagy of nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:40,721,799...40,732,143
Ensembl chr18:40,721,800...40,732,126 		JBrowse link
G Atg13 autophagy related 13 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:80,580,549...80,614,554
Ensembl chr 3:80,581,247...80,601,410 		JBrowse link
G Atg3 autophagy related 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:60,585,192...60,613,706
Ensembl chr11:60,585,171...60,613,718 		JBrowse link
G Atg5 autophagy related 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:49,301,783...49,393,147
Ensembl chr20:49,318,308...49,393,140 		JBrowse link
G Wdr45 WD repeat domain 45 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:15,621,249...15,627,159
Ensembl chr  X:15,621,209...15,627,235 		JBrowse link
G Wdr45b WD repeat domain 45B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:110,523,843...110,555,769
Ensembl chr10:110,525,749...110,555,761 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:97,859,730...97,896,949
Ensembl chr10:97,859,727...97,896,525 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:13,969,704...13,998,134
Ensembl chr12:13,969,586...13,998,172 		JBrowse link
autophagy of peroxisome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028887.1 IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr17:89,880,042...89,923,990 JBrowse link
G Acbd5 acyl-CoA binding domain containing 5 IEA
ISO		 GO_REF:0000002
(PMID:24535825)		 InterPro
RGD		 PMID:24535825 GO_REF:0000002 NCBI chr17:89,882,465...89,923,982
Ensembl chr17:89,883,615...89,923,423 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:22,964,121...23,047,896
Ensembl chr18:22,964,210...23,047,895 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:114,300,248...114,350,686
Ensembl chr 8:114,300,257...114,350,681 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:13,033,918...13,097,369
Ensembl chr 5:13,033,918...13,097,341 		JBrowse link
G Trappc8 trafficking protein particle complex 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:15,298,673...15,375,034
Ensembl chr18:15,298,978...15,375,031 		JBrowse link
chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg5 autophagy related 5 IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr20:49,301,783...49,393,147
Ensembl chr20:49,318,308...49,393,140 		JBrowse link
G Atg7 autophagy related 7 IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr 4:146,570,113...146,777,093
Ensembl chr 4:146,598,413...146,777,124 		JBrowse link
G Bag3 BAG cochaperone 3 IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr 1:199,941,258...199,965,191
Ensembl chr 1:199,941,161...199,965,191 		JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 NAS PMID:18644871 ParkinsonsUK-UCL PMID:18644871 RGD:10412301 NCBI chr 6:135,107,262...135,112,793
Ensembl chr 6:135,107,271...135,112,775 		JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 NAS PMID:18644871 ParkinsonsUK-UCL PMID:18644871 RGD:10412301 NCBI chr 9:17,817,791...17,823,163
Ensembl chr 9:17,817,721...17,823,243 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IDA PMID:18644871 ParkinsonsUK-UCL PMID:18644871 RGD:10412301 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179 		JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 IDA
ISO		 PMID:11082038
UniProtKB:P13473 (MGI:MGI:3813410|PMID:18644871), (MGI:MGI:3813419|PMID:18579532), (MGI:MGI:5805578|PMID:27628032)
(PMID:24880125), (PMID:27628032), (PMID:8662539)		 RGD PMID:8662539, PMID:18579532, PMID:18644871, PMID:24880125, PMID:27628032, PMID:11082038 MGI:MGI:3813410, MGI:MGI:3813419, MGI:MGI:5805578, RGD:1581607 NCBI chr  X:124,722,628...124,766,079
Ensembl chr  X:124,722,628...124,766,044 		JBrowse link
G LOC103692716 heat shock protein HSP 90-alpha NAS PMID:18644871 ParkinsonsUK-UCL PMID:18644871 RGD:10412301 NCBI chr 6:135,044,833...135,050,417
Ensembl chr 6:135,045,363...135,049,728 		JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr10:15,197,754...15,200,035
Ensembl chr10:15,197,803...15,200,117 		JBrowse link
G Synpo2 synaptopodin 2 IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr 2:227,255,243...227,411,924
Ensembl chr 2:227,255,902...227,411,964 		JBrowse link
chaperone-mediated protein transport involved in chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07011951.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:177,651,241...177,653,288 JBrowse link
G AABR07033324.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr11:17,336,444...17,340,373 JBrowse link
G AABR07048992.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:99,031,013...99,033,107 JBrowse link
G Hsc70-ps1 heat shock cognate protein 70, pseudogene 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:177,651,231...177,653,349 JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 NAS PMID:18644871 ParkinsonsUK-UCL PMID:18644871 RGD:10412301 NCBI chr 6:135,107,262...135,112,793
Ensembl chr 6:135,107,271...135,112,775 		JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 NAS PMID:18644871 ParkinsonsUK-UCL PMID:18644871 RGD:10412301 NCBI chr 9:17,817,791...17,823,163
Ensembl chr 9:17,817,721...17,823,243 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IGI
IBA		 PMID:18644871
PMID:21873635		 MGI
GO_Central		 PMID:18644871, PMID:21873635 RGD:10412301, RGD:13792537 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179 		JBrowse link
G LOC100363133 heat shock cognate 71 kDa protein-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:99,030,998...99,033,110 JBrowse link
G LOC103692716 heat shock protein HSP 90-alpha NAS PMID:18644871 ParkinsonsUK-UCL PMID:18644871 RGD:10412301 NCBI chr 6:135,044,833...135,050,417
Ensembl chr 6:135,045,363...135,049,728 		JBrowse link
G LOC680121 similar to heat shock protein 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:13,499,168...13,501,271
Ensembl chr11:13,499,164...13,501,263 		JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:11,433,815...11,526,465
Ensembl chr12:11,407,213...11,526,465 		JBrowse link
glycophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rb1cc1 RB1-inducible coiled-coil 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:13,033,918...13,097,369
Ensembl chr 5:13,033,918...13,097,341 		JBrowse link
G Stbd1 starch binding domain 1 ISO
ISS		 (PMID:20810658)
GO_REF:0000024		 RGD
GO_Central		 PMID:20810658 GO_REF:0000024 NCBI chr14:16,976,355...16,979,760
Ensembl chr14:16,976,356...16,979,760 		JBrowse link
induction by virus of host autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 ISO (MGI:MGI:5544501|PMID:24310610) RGD PMID:24310610 MGI:MGI:5544501 NCBI chr 3:110,159,624...110,245,382
Ensembl chr 3:110,159,708...110,249,217 		JBrowse link
G Phb2 prohibitin 2 ISO
IEA		 (PMID:32276428)
GO_REF:0000107		 RGD
Ensembl		 PMID:32276428 GO_REF:0000107 NCBI chr 4:157,230,769...157,235,375
Ensembl chr 4:157,230,769...157,235,367 		JBrowse link
late endosomal microautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07011951.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:177,651,241...177,653,288 JBrowse link
G AABR07033324.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr11:17,336,444...17,340,373 JBrowse link
G AABR07048992.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:99,031,013...99,033,107 JBrowse link
G Hsc70-ps1 heat shock cognate protein 70, pseudogene 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:177,651,231...177,653,349 JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 ISO
IBA		 (MGI:MGI:5700294|PMID:21238931)
PMID:21873635		 RGD PMID:21238931, PMID:21873635 MGI:MGI:5700294, RGD:13792537 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179 		JBrowse link
G LOC100363133 heat shock cognate 71 kDa protein-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:99,030,998...99,033,110 JBrowse link
G LOC680121 similar to heat shock protein 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:13,499,168...13,501,271
Ensembl chr11:13,499,164...13,501,263 		JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A ISO
IEA		 (MGI:MGI:5700294|PMID:21238931)
GO_REF:0000107		 RGD
Ensembl		 PMID:21238931 GO_REF:0000107, MGI:MGI:5700294 NCBI chr19:39,230,050...39,243,298
Ensembl chr19:39,229,754...39,243,496 		JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B ISO (MGI:MGI:5700294|PMID:21238931) RGD PMID:21238931 MGI:MGI:5700294 NCBI chr13:26,825,261...26,850,460
Ensembl chr13:26,825,261...26,850,460 		JBrowse link
late nucleophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:221,612,584...221,632,291
Ensembl chr 1:221,612,584...221,632,267 		JBrowse link
G Atg2b autophagy related 2B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:129,449,451...129,519,599
Ensembl chr 6:129,449,449...129,509,720 		JBrowse link
G Atg7 autophagy related 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:146,570,113...146,777,093
Ensembl chr 4:146,598,413...146,777,124 		JBrowse link
G Atg9a autophagy related 9A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:82,382,800...82,393,429
Ensembl chr 9:82,382,800...82,393,382 		JBrowse link
G Atg9b autophagy related 9B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:7,314,369...7,322,095
Ensembl chr 4:7,314,369...7,321,029 		JBrowse link
lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aup1 AUP1, lipid droplet regulating VLDL assembly factor ISO
IEA		 (PMID:29902443)
GO_REF:0000107		 RGD
Ensembl		 PMID:29902443 GO_REF:0000107 NCBI chr 4:113,887,030...113,890,103
Ensembl chr 4:113,887,115...113,890,101 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family ISO
ISS		 (MGI:MGI:5689086|PMID:23708524)
GO_REF:0000024		 RGD
GO_Central		 PMID:23708524 GO_REF:0000024, MGI:MGI:5689086 NCBI chr 4:119,910,461...119,963,065
Ensembl chr 4:119,910,478...119,959,173 		JBrowse link
macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07048308.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:71,999,926...72,000,318 JBrowse link
G AABR07072668.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:59,991,111...59,991,590 JBrowse link
G Acbd5 acyl-CoA binding domain containing 5 NOT ISO (PMID:24535825) RGD PMID:24535825 NCBI chr17:89,882,465...89,923,982
Ensembl chr17:89,883,615...89,923,423 		JBrowse link
G Atg10 autophagy related 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:19,853,546...20,152,918
Ensembl chr 2:19,853,546...20,152,884 		JBrowse link
G Atg13 autophagy related 13 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:80,580,549...80,614,554
Ensembl chr 3:80,581,247...80,601,410 		JBrowse link
G Atg14 autophagy related 14 ISO (PMID:23878393) RGD PMID:23878393 NCBI chr15:24,343,418...24,374,776
Ensembl chr15:24,343,314...24,374,753 		JBrowse link
G Atg3 autophagy related 3 ISO (MGI:MGI:5562485|PMID:24035364) RGD PMID:24035364 MGI:MGI:5562485 NCBI chr11:60,585,192...60,613,706
Ensembl chr11:60,585,171...60,613,718 		JBrowse link
G Atg5 autophagy related 5 ISO MGI:MGI:3612279 (MGI:MGI:4457987|PMID:20453062), (MGI:MGI:5494529|PMID:22496425), (MGI:MGI:5500861|PMID:23704209), (MGI:MGI:5562485|PMID:24035364) RGD PMID:20453062, PMID:22496425, PMID:23704209, PMID:24035364 MGI:MGI:4457987, MGI:MGI:5494529, MGI:MGI:5500861, MGI:MGI:5562485 NCBI chr20:49,301,783...49,393,147
Ensembl chr20:49,318,308...49,393,140 		JBrowse link
G Atg7 autophagy related 7 ISO (PMID:22354037)
MGI:MGI:1934631|MGI:MGI:3587769 (MGI:MGI:5494529|PMID:22496425), (MGI:MGI:5500861|PMID:23704209), (MGI:MGI:5562485|PMID:24035364)		 RGD PMID:22354037, PMID:22496425, PMID:23704209, PMID:24035364 MGI:MGI:5494529, MGI:MGI:5500861, MGI:MGI:5562485 NCBI chr 4:146,570,113...146,777,093
Ensembl chr 4:146,598,413...146,777,124 		JBrowse link
G Becn1 beclin 1 ISS
ISO		 GO_REF:0000024
MGI:MGI:1097712|MGI:MGI:2683833 (MGI:MGI:2682527|PMID:14657337), (MGI:MGI:3723543|PMID:17468177), (MGI:MGI:5619439|PMID:23332761)		 UniProt
RGD		 PMID:14657337, PMID:17468177, PMID:23332761 GO_REF:0000024, MGI:MGI:2682527, MGI:MGI:3723543, MGI:MGI:5619439 NCBI chr10:89,209,944...89,225,297
Ensembl chr10:89,209,940...89,225,297 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO MGI:MGI:2388888 (MGI:MGI:3690270|PMID:16714284) RGD PMID:16714284 MGI:MGI:3690270 NCBI chr 1:197,986,384...197,999,726
Ensembl chr 1:197,986,385...197,997,664 		JBrowse link
G Ei24 EI24, autophagy associated transmembrane protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:39,254,883...39,271,238
Ensembl chr 8:39,254,889...39,266,959 		JBrowse link
G Gabarap GABA type A receptor-associated protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:56,601,288...56,604,223
Ensembl chr10:56,601,288...56,604,221 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:163,293,724...163,302,866
Ensembl chr 4:163,293,724...163,302,858 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:44,164,935...44,175,771
Ensembl chr19:44,164,935...44,175,770 		JBrowse link
G Hdac10 histone deacetylase 10 ISS
ISO		 GO_REF:0000024
(PMID:23801752)		 UniProt
RGD		 PMID:23801752 GO_REF:0000024 NCBI chr 7:130,102,335...130,109,036
Ensembl chr 7:130,102,347...130,107,437 		JBrowse link
G Ilrun inflammation and lipid regulator with UBA-like and NBR1-like domains IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:7,331,321...7,397,588
Ensembl chr20:7,331,326...7,397,448 		JBrowse link
G LOC100359937 GABA(A) receptor-associated protein-like 2-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:95,943,674...95,944,604
Ensembl chr19:44,164,935...44,175,770 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha ISO
IBA		 (PMID:28223137)
PMID:21873635		 RGD PMID:28223137, PMID:21873635 RGD:13792537 NCBI chr 3:150,801,289...150,802,935
Ensembl chr 3:150,801,289...150,802,935 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta ISO
IBA		 (PMID:28223137)
PMID:21873635		 RGD PMID:28223137, PMID:21873635 RGD:13792537 NCBI chr19:53,635,449...53,643,970
Ensembl chr19:53,629,779...53,646,058 		JBrowse link
G Map1lc3b2 microtubule-associated protein 1 light chain 3 beta 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,864,144...75,874,567
Ensembl chr16:75,873,881...75,874,519 		JBrowse link
G Nbr1 NBR1, autophagy cargo receptor IEA
IBA
ISS
ISO		 GO_REF:0000107
GO_REF:0000002
PMID:21873635
GO_REF:0000024
(PMID:19250911)		 Ensembl
InterPro
UniProt
RGD		 PMID:19250911, PMID:21873635 GO_REF:0000002, GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr10:89,455,202...89,483,791
Ensembl chr10:89,459,650...89,484,080 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha ISO MGI:MGI:2685054 (MGI:MGI:5565574|PMID:24098492) RGD PMID:24098492 MGI:MGI:5565574 NCBI chr 1:185,210,922...185,326,314
Ensembl chr 1:185,210,922...185,326,314 		JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta ISO MGI:MGI:1203729 (MGI:MGI:5565574|PMID:24098492) RGD PMID:24098492 MGI:MGI:5565574 NCBI chr13:49,848,939...49,909,404
Ensembl chr13:49,850,189...49,911,202 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 ISS
ISO		 GO_REF:0000024
(MGI:MGI:5619439|PMID:23332761), (MGI:MGI:5630037|PMID:25578879)		 UniProt
RGD		 PMID:23332761, PMID:25578879 GO_REF:0000024, MGI:MGI:5619439, MGI:MGI:5630037 NCBI chr18:22,964,121...23,047,896
Ensembl chr18:22,964,210...23,047,895 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:114,300,248...114,350,686
Ensembl chr 8:114,300,257...114,350,681 		JBrowse link
G Plaa phospholipase A2, activating protein ISO
ISS		 (PMID:27753622)
GO_REF:0000024		 RGD
UniProt		 PMID:27753622 GO_REF:0000024 NCBI chr 5:113,548,913...113,578,928
Ensembl chr 5:113,548,913...113,578,928 		JBrowse link
G Sqstm1 sequestosome 1 ISO
ISS		 (PMID:20168092)
GO_REF:0000024		 RGD
UniProt		 PMID:20168092 GO_REF:0000024 NCBI chr10:35,704,728...35,716,316
Ensembl chr10:35,704,730...35,716,294 		JBrowse link
G Tbc1d5 TBC1 domain family, member 5 ISO (PMID:24603492) RGD PMID:24603492 NCBI chr 9:1,144,641...1,747,732
Ensembl chr 9:1,145,700...1,746,397 		JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 ISO MGI:MGI:1856973 (MGI:MGI:5500861|PMID:23704209) RGD PMID:23704209 MGI:MGI:5500861 NCBI chr 1:219,126,687...219,139,466
Ensembl chr 1:219,127,602...219,139,464 		JBrowse link
G Tmem74 transmembrane protein 74 ISO (PMID:18294959) RGD PMID:18294959 NCBI chr 7:82,684,666...82,689,753
Ensembl chr 7:82,686,213...82,687,130 		JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 ISO MGI:MGI:1931135|MGI:MGI:5637673 (MGI:MGI:5582129|PMID:24713655) RGD PMID:24713655 MGI:MGI:5582129 NCBI chr 3:150,910,398...150,918,525
Ensembl chr 3:150,910,398...150,918,525 		JBrowse link
G Ubqln1 ubiquilin 1 ISO (PMID:20529957) RGD PMID:20529957 NCBI chr17:6,840,441...6,878,842
Ensembl chr17:6,840,463...6,878,844 		JBrowse link
G Ubxn6 UBX domain protein 6 ISO (PMID:27753622) RGD PMID:27753622 NCBI chr 9:10,995,516...11,000,643
Ensembl chr 9:10,995,198...11,000,642 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO (PMID:22354037)
UniProtKB:O70405 (MGI:MGI:5285135|PMID:21258367), (MGI:MGI:5607224|PMID:21855797)		 RGD PMID:21258367, PMID:21855797, PMID:22354037 MGI:MGI:5285135, MGI:MGI:5607224 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702 		JBrowse link
G Vcp valosin-containing protein ISO
IBA
ISS		 (PMID:27753622)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:27753622, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953 		JBrowse link
G Vps41 VPS41 subunit of HOPS complex IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:48,643,754...48,810,633
Ensembl chr17:48,648,879...48,810,991 		JBrowse link
G Yod1 YOD1 deubiquitinase ISO
ISS		 (PMID:27753622)
GO_REF:0000024		 RGD
UniProt		 PMID:27753622 GO_REF:0000024 NCBI chr13:47,441,296...47,443,013
Ensembl chr13:47,440,803...47,443,188 		JBrowse link
G Zfyve1 zinc finger FYVE-type containing 1 ISO (PMID:25578879) RGD PMID:25578879 NCBI chr 6:107,031,411...107,080,590
Ensembl chr 6:107,031,412...107,080,524 		JBrowse link
mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 ISO (PMID:21753002), (PMID:25215947) RGD PMID:21753002, PMID:25215947 NCBI chr 3:80,634,470...80,830,068
Ensembl chr 3:80,634,470...80,830,068 		JBrowse link
G Atg13 autophagy related 13 ISO
IBA		 (MGI:MGI:5607224|PMID:21855797)
PMID:21873635		 RGD PMID:21855797, PMID:21873635 MGI:MGI:5607224, RGD:13792537 NCBI chr 3:80,580,549...80,614,554
Ensembl chr 3:80,581,247...80,601,410 		JBrowse link
G Atg14 autophagy related 14 ISO
IBA		 (PMID:23878393)
PMID:21873635		 RGD PMID:23878393, PMID:21873635 RGD:13792537 NCBI chr15:24,343,418...24,374,776
Ensembl chr15:24,343,314...24,374,753 		JBrowse link
G Becn1 beclin 1 ISO (PMID:23878393) RGD PMID:23878393 NCBI chr10:89,209,944...89,225,297
Ensembl chr10:89,209,940...89,225,297 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta ISO
ISS		 (PMID:28017329)
GO_REF:0000024		 RGD
UniProt		 PMID:28017329 GO_REF:0000024 NCBI chr19:53,635,449...53,643,970
Ensembl chr19:53,629,779...53,646,058 		JBrowse link
G Phb2 prohibitin 2 ISO
ISS		 (PMID:28017329)
(MGI:MGI:6436385|PMID:28017329)
GO_REF:0000024		 RGD
UniProt		 PMID:28017329 GO_REF:0000024, MGI:MGI:6436385 NCBI chr 4:157,230,769...157,235,375
Ensembl chr 4:157,230,769...157,235,367 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase ISO MGI:MGI:1921624 (MGI:MGI:5603233|PMID:24949970)
(PMID:28017329)		 RGD PMID:24949970, PMID:28017329 MGI:MGI:5603233 NCBI chr 1:48,880,015...50,069,998 JBrowse link
G Sqstm1 sequestosome 1 ISO
IBA		 UniProtKB:Q9JK66 (PMID:20457763)
PMID:21873635		 RGD PMID:20457763, PMID:21873635 RGD:13792537 NCBI chr10:35,704,728...35,716,316
Ensembl chr10:35,704,730...35,716,294 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO (MGI:MGI:5607224|PMID:21855797) RGD PMID:21855797 MGI:MGI:5607224 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702 		JBrowse link
mitophagy by induced vacuole formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata18 spermatogenesis associated 18 IEA
IBA
ISS
ISO		 GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:21264228)		 Ensembl
UniProt
RGD		 PMID:21264228, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr14:37,081,529...37,108,245
Ensembl chr14:37,081,427...37,108,341 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 ISO MGI:MGI:2683833 (MGI:MGI:5888970|PMID:27994061) RGD PMID:27994061 MGI:MGI:5888970 NCBI chr10:89,209,944...89,225,297
Ensembl chr10:89,209,940...89,225,297 		JBrowse link
G Chmp4b charged multivesicular body protein 4B ISO (PMID:21975012) RGD PMID:21975012 NCBI chr 3:150,188,275...150,227,453
Ensembl chr 3:150,188,455...150,227,405 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 ISO (MGI:MGI:5543871|PMID:23918802) RGD PMID:23918802 MGI:MGI:5543871 NCBI chr20:4,576,033...4,592,980
Ensembl chr20:4,576,057...4,592,980 		JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 ISO
ISS		 (PMID:25495476)
GO_REF:0000024		 RGD
GO_Central		 PMID:25495476 GO_REF:0000024 NCBI chr 8:39,305,128...39,350,270
Ensembl chr 8:39,305,128...39,350,270 		JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 ISO
ISS
IEA		 (PMID:25495476)
GO_REF:0000024
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:25495476 GO_REF:0000024, GO_REF:0000107 NCBI chr 6:963,903...1,003,955
Ensembl chr 6:963,907...1,004,001 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 ISO
IBA		 (PMID:23916833)
PMID:21873635		 RGD PMID:23916833, PMID:21873635 RGD:13792537 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584 		JBrowse link
G Mtm1 myotubularin 1 ISO
IBA		 MGI:MGI:2450997 (MGI:MGI:5510937|PMID:23695157)
PMID:21873635		 RGD PMID:23695157, PMID:21873635 MGI:MGI:5510937, RGD:13792537 NCBI chr 6:18,821,821...18,840,449
Ensembl chr 6:18,821,815...18,839,409 		JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator ISS
ISO		 GO_REF:0000024
(PMID:20181828)		 UniProt
RGD		 PMID:20181828 GO_REF:0000024 NCBI chr 1:194,767,484...194,769,519
Ensembl chr 1:194,767,474...194,769,524 		JBrowse link
G Phf23 PHD finger protein 23 ISO
IBA
ISS		 (PMID:25484098)
PMID:21873635
GO_REF:0000024		 RGD
GO_Central		 PMID:25484098, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:56,605,078...56,609,236
Ensembl chr10:56,605,140...56,609,233 		JBrowse link
G Pink1 PTEN induced kinase 1 ISO (PMID:19279012) RGD PMID:19279012 NCBI chr 5:156,677,146...156,689,258
Ensembl chr 5:156,677,146...156,689,415 		JBrowse link
G Scfd1 sec1 family domain containing 1 ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 6:72,124,408...72,202,703
Ensembl chr 6:72,124,417...72,202,713 		JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 2:200,076,079...200,096,861
Ensembl chr 2:200,076,054...200,098,076 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:47,019,326...47,026,465
Ensembl chr10:47,018,974...47,026,465 		JBrowse link
G Tmem39a transmembrane protein 39a ISO
IBA
ISS		 (PMID:31806350)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:31806350, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr11:64,723,181...64,752,514
Ensembl chr11:64,723,186...64,752,544 		JBrowse link
negative regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A ISO (PMID:28223137) RGD PMID:28223137 NCBI chr10:5,002,196...5,196,914
Ensembl chr10:5,009,826...5,196,892 		JBrowse link
G Phf23 PHD finger protein 23 ISO
IBA
ISS		 (PMID:25484098)
PMID:21873635
GO_REF:0000024		 RGD
GO_Central		 PMID:25484098, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:56,605,078...56,609,236
Ensembl chr10:56,605,140...56,609,233 		JBrowse link
G Rubcn rubicon autophagy regulator ISO
IBA		 (PMID:21062745)
PMID:21873635		 RGD PMID:21062745, PMID:21873635 RGD:13792537 NCBI chr11:71,150,506...71,199,254
Ensembl chr11:71,151,132...71,197,035 		JBrowse link
G Tmem39a transmembrane protein 39a ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(PMID:31806350)		 UniProt
RGD		 PMID:31806350, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr11:64,723,181...64,752,514
Ensembl chr11:64,723,186...64,752,544 		JBrowse link
G Ubqln4 ubiquilin 4 ISO (PMID:23459205) RGD PMID:23459205 NCBI chr 2:187,915,701...187,931,035
Ensembl chr 2:187,915,751...187,931,035 		JBrowse link
negative regulation of autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adra1a adrenoceptor alpha 1A ISO (MGI:MGI:5888970|PMID:27994061) RGD PMID:27994061 MGI:MGI:5888970 NCBI chr15:43,296,997...43,398,314
Ensembl chr15:43,298,794...43,392,451 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO (PMID:18387192) RGD PMID:18387192 NCBI chr 6:137,218,398...137,239,970
Ensembl chr 6:137,218,376...137,236,258 		JBrowse link
G Bcl2 BCL2, apoptosis regulator ISO
IEA		 (MGI:MGI:3796473|PMID:18281291)
GO_REF:0000107		 RGD
Ensembl		 PMID:18281291 GO_REF:0000107, MGI:MGI:3796473 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374 		JBrowse link
G Becn1 beclin 1 ISO (MGI:MGI:5888970|PMID:27994061) RGD PMID:27994061 MGI:MGI:5888970 NCBI chr10:89,209,944...89,225,297
Ensembl chr10:89,209,940...89,225,297 		JBrowse link
G Bmf Bcl2 modifying factor ISO
IBA		 (PMID:23629966)
PMID:21873635
(MGI:MGI:5490676|PMID:23629966)		 RGD PMID:23629966, PMID:21873635 MGI:MGI:5490676, RGD:13792537 NCBI chr 3:110,303,515...110,324,125
Ensembl chr 3:110,306,067...110,324,084 		JBrowse link
G Cptp ceramide-1-phosphate transfer protein ISS
ISO		 GO_REF:0000024
(PMID:29164996)		 UniProt
RGD		 PMID:29164996 GO_REF:0000024 NCBI chr 5:173,314,219...173,318,384
Ensembl chr 5:173,314,228...173,318,313 		JBrowse link
G Dap death-associated protein ISO
IBA		 (PMID:20537536)
PMID:21873635		 RGD PMID:20537536, PMID:21873635 RGD:13792537 NCBI chr 2:84,275,884...84,328,998
Ensembl chr 2:84,275,884...84,328,998 		JBrowse link
G Dapl1 death associated protein-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:45,538,408...45,559,281
Ensembl chr 3:45,538,797...45,559,331 		JBrowse link
G Eif4e eukaryotic translation initiation factor 4E NOT ISO (PMID:18426977) RGD PMID:18426977 NCBI chr 2:243,819,616...243,853,987
Ensembl chr 2:243,820,661...243,852,631 		JBrowse link
G Eif4g1 eukaryotic translation initiation factor 4 gamma, 1 ISO (PMID:18426977) RGD PMID:18426977 NCBI chr11:83,907,659...83,927,683
Ensembl chr11:83,908,109...83,926,524 		JBrowse link
G Eif4g2 eukaryotic translation initiation factor 4, gamma 2 ISO (PMID:18426977) RGD PMID:18426977 NCBI chr 1:175,883,362...175,895,510
Ensembl chr 1:175,883,363...175,895,510 		JBrowse link
G Eif4g3 eukaryotic translation initiation factor 4 gamma, 3 NOT ISO (PMID:18426977) RGD PMID:18426977 NCBI chr 5:156,343,663...156,564,037
Ensembl chr 5:156,396,695...156,564,037 		JBrowse link
G Foxk1 forkhead box K1 ISO (PMID:25402684) RGD PMID:25402684 NCBI chr12:14,183,436...14,244,634
Ensembl chr12:14,180,029...14,244,316 		JBrowse link
G Foxk2 forkhead box K2 ISO (MGI:MGI:5615527|PMID:25402684) RGD PMID:25402684 MGI:MGI:5615527 NCBI chr10:110,468,905...110,518,854
Ensembl chr10:110,469,290...110,518,848 		JBrowse link
G Gata4 GATA binding protein 4 IMP RGD PMID:19901028 RGD:5131537 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965 		JBrowse link
G Golga2 golgin A2 ISO (PMID:22735382) RGD PMID:22735382 NCBI chr 3:11,317,328...11,337,569
Ensembl chr 3:11,317,183...11,336,458 		JBrowse link
G Herc1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 ISO MGI:MGI:3613033 (MGI:MGI:4461108|PMID:20041218) RGD PMID:20041218 MGI:MGI:4461108 NCBI chr 8:72,029,550...72,198,363
Ensembl chr 8:72,029,489...72,198,358 		JBrowse link
G Htr2b 5-hydroxytryptamine receptor 2B IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:20099302)		 Ensembl
UniProt
RGD		 PMID:20099302 GO_REF:0000024, GO_REF:0000107 NCBI chr 9:93,112,781...93,130,135
Ensembl chr 9:93,112,805...93,125,014 		JBrowse link
G Il10 interleukin 10 ISO (PMID:26962683) RGD PMID:26962683 NCBI chr13:47,738,933...47,743,392
Ensembl chr13:47,739,526...47,743,392 		JBrowse link
G Il10ra interleukin 10 receptor subunit alpha ISO (PMID:26962683) RGD PMID:26962683 NCBI chr 8:49,558,062...49,573,891
Ensembl chr 8:49,560,035...49,573,742 		JBrowse link
G Il3 interleukin 3 ISO (MGI:MGI:3575206|PMID:15680329) RGD PMID:15680329 MGI:MGI:3575206 NCBI chr10:39,620,535...39,622,973
Ensembl chr10:39,620,563...39,622,973 		JBrowse link
G Kdm4a lysine demethylase 4A ISO (PMID:25660547) RGD PMID:25660547 NCBI chr 5:136,967,650...137,014,402
Ensembl chr 5:136,967,650...137,014,430 		JBrowse link
G Klhl22 kelch-like family member 22 ISS
ISO		 GO_REF:0000024
(PMID:29769719)		 UniProt
RGD		 PMID:29769719 GO_REF:0000024 NCBI chr11:87,646,489...87,718,808
Ensembl chr11:87,677,966...87,718,826 		JBrowse link
G Lep leptin ISO
ISS		 (PMID:25060689)
GO_REF:0000024
(MGI:MGI:5705211|PMID:25060689)		 RGD
UniProt		 PMID:25060689 GO_REF:0000024, MGI:MGI:5705211 NCBI chr 4:56,337,695...56,351,818
Ensembl chr 4:56,337,695...56,351,818 		JBrowse link
G Lepr leptin receptor ISO
IEA
ISS		 (PMID:25060689)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:25060689 GO_REF:0000024, GO_REF:0000107 NCBI chr 5:120,503,475...120,682,281
Ensembl chr 5:120,564,645...120,682,221 		JBrowse link
G Mcl1 MCL1 apoptosis regulator, BCL2 family member ISO (PMID:24113155) RGD PMID:24113155 NCBI chr 2:197,786,212...197,788,992 JBrowse link
G Mir223 microRNA 223 IDA RGD PMID:29608885 RGD:21408565 NCBI chr  X:65,367,812...65,367,921
Ensembl chr  X:65,367,812...65,367,921 		JBrowse link
G Mt3 metallothionein 3 ISO
ISS		 (MGI:MGI:4881636|PMID:20544854)
GO_REF:0000024		 RGD
UniProt		 PMID:20544854 GO_REF:0000024, MGI:MGI:4881636 NCBI chr19:11,324,708...11,326,112
Ensembl chr19:11,324,698...11,326,139 		JBrowse link
G Mtmr9 myotubularin related protein 9 ISO
IBA		 UniProtKB:Q96EF0-1 (PMID:22647598)
PMID:21873635		 RGD PMID:22647598, PMID:21873635 RGD:13792537 NCBI chr15:46,697,262...46,719,296
Ensembl chr15:46,693,383...46,719,252 		JBrowse link
G Mtor mechanistic target of rapamycin kinase IMP
IBA
ISO
ISS		 PMID:21873635
(PMID:22424946), (PMID:22576015), (PMID:30704899)
GO_REF:0000024
(MGI:MGI:5285135|PMID:21258367)		 RGD
UniProt		 PMID:21258367, PMID:22424946, PMID:22576015, PMID:30704899, PMID:24725502, PMID:21873635 GO_REF:0000024, MGI:MGI:5285135, RGD:10040964, RGD:13792537 NCBI chr 5:165,263,813...165,373,967
Ensembl chr 5:165,263,800...165,373,967 		JBrowse link
G Nampt nicotinamide phosphoribosyltransferase IMP RGD PMID:26601421 RGD:13781888 NCBI chr 6:52,122,085...52,156,473
Ensembl chr 6:52,122,085...52,156,472 		JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator ISS
ISO
IMP		 GO_REF:0000024
(MGI:MGI:6283395|PMID:20181828)
(PMID:20181828)		 UniProt
RGD		 PMID:20181828, PMID:20181828 GO_REF:0000024, MGI:MGI:6283395, RGD:14390062 NCBI chr 1:194,767,484...194,769,519
Ensembl chr 1:194,767,474...194,769,524 		JBrowse link
G Ptk2 protein tyrosine kinase 2 ISO
IEA		 (MGI:MGI:5888970|PMID:27994061)
GO_REF:0000107		 RGD
Ensembl		 PMID:27994061 GO_REF:0000107, MGI:MGI:5888970 NCBI chr 7:114,436,419...114,611,317
Ensembl chr 7:114,437,361...114,590,119 		JBrowse link
G Ptpn22 protein tyrosine phosphatase, non-receptor type 22 ISO (PMID:23991106) RGD PMID:23991106 NCBI chr 2:206,342,066...206,390,348
Ensembl chr 2:206,342,066...206,390,348 		JBrowse link
G Rasip1 Ras interacting protein 1 ISO (PMID:22354037) RGD PMID:22354037 NCBI chr 1:101,609,209...101,621,648
Ensembl chr 1:101,610,773...101,621,646 		JBrowse link
G Rnf5 ring finger protein 5 ISO MGI:MGI:3775796 (MGI:MGI:5469257|PMID:23093945) RGD PMID:23093945 MGI:MGI:5469257 NCBI chr20:4,366,244...4,368,690
Ensembl chr20:4,366,246...4,368,693 		JBrowse link
G Rraga Ras-related GTP binding A ISO
ISS		 (PMID:25936802)
GO_REF:0000024		 RGD
UniProt		 PMID:25936802 GO_REF:0000024 NCBI chr 5:104,941,067...104,942,662
Ensembl chr 5:104,941,066...104,942,662 		JBrowse link
G Rubcn rubicon autophagy regulator ISO (PMID:19270696) RGD PMID:19270696 NCBI chr11:71,150,506...71,199,254
Ensembl chr11:71,151,132...71,197,035 		JBrowse link
G Sirt2 sirtuin 2 IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:20543840)		 Ensembl
UniProt
RGD		 PMID:20543840 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:86,948,866...86,971,954
Ensembl chr 1:86,948,918...86,971,952 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO (PMID:26962683) RGD PMID:26962683 NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233 		JBrowse link
G Tbc1d14 TBC1 domain family, member 14 ISO
IEA		 (PMID:22613832)
GO_REF:0000107		 RGD
Ensembl		 PMID:22613832 GO_REF:0000107 NCBI chr14:79,172,272...79,438,765
Ensembl chr14:79,205,466...79,438,764 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 ISO UniProtKB:P05067|UniProtKB:P49768 (MGI:MGI:5906931|PMID:28802038) RGD PMID:28802038 MGI:MGI:5906931 NCBI chr 9:14,611,541...14,618,076
Ensembl chr 9:14,611,561...14,618,013 		JBrowse link
G Washc1 WASH complex subunit 1 IEA
ISO		 GO_REF:0000107
(MGI:MGI:5519172|PMID:23974797)		 Ensembl
RGD		 PMID:23974797 GO_REF:0000107, MGI:MGI:5519172 NCBI chr 9:113,918,914...113,936,861
Ensembl chr 9:113,918,858...113,936,860 		JBrowse link
G Wdr6 WD repeat domain 6 ISO (PMID:22354037) RGD PMID:22354037 NCBI chr 8:117,358,345...117,364,761
Ensembl chr 8:117,358,787...117,366,096 		JBrowse link
G Zkscan3 zinc finger with KRAB and SCAN domains 3 ISO (PMID:23434374) RGD PMID:23434374 NCBI chr17:45,247,724...45,263,422
Ensembl chr17:45,247,776...45,263,418 		JBrowse link
negative regulation of autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pink1 PTEN induced kinase 1 ISO (PMID:19279012) RGD PMID:19279012 NCBI chr 5:156,677,146...156,689,258
Ensembl chr 5:156,677,146...156,689,415 		JBrowse link
G Tspo translocator protein ISO (MGI:MGI:5689082|PMID:25470454)
(PMID:25470454)		 RGD PMID:25470454 MGI:MGI:5689082 NCBI chr 7:124,460,358...124,470,610
Ensembl chr 7:124,460,358...124,470,609 		JBrowse link
negative regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsa cathepsin A ISO
NAS
ISS		 (MGI:MGI:5700310|PMID:12505983)
GO_REF:0000024
UniProtKB:P10619 (PMID:12505983)		 RGD
ParkinsonsUK-UCL		 PMID:12505983, PMID:12505983 GO_REF:0000024, MGI:MGI:5700310, RGD:10412300 NCBI chr 3:161,298,750...161,304,627
Ensembl chr 3:161,298,962...161,304,625 		JBrowse link
G Snca synuclein alpha ISO (PMID:20697033) RGD PMID:20697033 NCBI chr 4:90,782,412...90,883,236
Ensembl chr 4:90,782,374...90,882,285 		JBrowse link
negative regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmox1 heme oxygenase 1 ISO MGI:MGI:2429784 (MGI:MGI:5430482|PMID:20705711) RGD PMID:20705711 MGI:MGI:5430482 NCBI chr19:14,508,634...14,515,455
Ensembl chr19:14,508,616...14,515,456 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 ISO (PMID:19640926) RGD PMID:19640926 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584 		JBrowse link
G Lzts1 leucine zipper tumor suppressor 1 ISO (PMID:22354037) RGD PMID:22354037 NCBI chr16:22,250,452...22,306,667
Ensembl chr16:22,250,470...22,306,662 		JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO
IBA		 (PMID:25327288)
PMID:21873635
(MGI:MGI:3690270|PMID:16714284), (MGI:MGI:5563734|PMID:23274896)		 RGD PMID:16714284, PMID:23274896, PMID:25327288, PMID:21873635 MGI:MGI:3690270, MGI:MGI:5563734, RGD:13792537 NCBI chr 5:165,263,813...165,373,967
Ensembl chr 5:165,263,800...165,373,967 		JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 ISO MGI:MGI:1857409|MGI:MGI:1891828 (MGI:MGI:3723543|PMID:17468177) RGD PMID:17468177 MGI:MGI:3723543 NCBI chr18:3,616,878...3,662,656
Ensembl chr18:3,616,878...3,662,683 		JBrowse link
G Nrbp2 nuclear receptor binding protein 2 ISO (PMID:22354037) RGD PMID:22354037 NCBI chr 7:117,145,106...117,151,694
Ensembl chr 7:117,145,961...117,151,694 		JBrowse link
G Pink1 PTEN induced kinase 1 ISO (PMID:19279012) RGD PMID:19279012 NCBI chr 5:156,677,146...156,689,258
Ensembl chr 5:156,677,146...156,689,415 		JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 ISO MGI:MGI:4044390 (MGI:MGI:5588624|PMID:24797518) RGD PMID:24797518 MGI:MGI:5588624 NCBI chr10:65,781,994...65,790,833
Ensembl chr10:65,780,494...65,790,272 		JBrowse link
G Qsox1 quiescin sulfhydryl oxidase 1 ISO (PMID:24475161) RGD PMID:24475161 NCBI chr13:73,423,396...73,460,890
Ensembl chr13:73,423,397...73,460,935 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:47,019,326...47,026,465
Ensembl chr10:47,018,974...47,026,465 		JBrowse link
G Tsc1 TSC complex subunit 1 IMP PMID:23435171 ParkinsonsUK-UCL PMID:23435171 RGD:10448950 NCBI chr 3:7,219,955...7,269,063
Ensembl chr 3:7,237,192...7,265,145 		JBrowse link
G Tsc2 TSC complex subunit 2 IMP RGD PMID:24599401 RGD:11568679 NCBI chr10:13,962,006...13,996,684
Ensembl chr10:13,961,947...13,996,584 		JBrowse link
G Usp36 ubiquitin specific peptidase 36 ISO (PMID:22622177) RGD PMID:22622177 NCBI chr10:107,292,828...107,324,355
Ensembl chr10:107,292,828...107,324,355 		JBrowse link
negative regulation of macroautophagy by TORC1 signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A ISO (PMID:28223137) RGD PMID:28223137 NCBI chr10:5,002,196...5,196,914
Ensembl chr10:5,009,826...5,196,892 		JBrowse link
negative regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A ISO MGI:MGI:5648633 (MGI:MGI:5603233|PMID:24949970) RGD PMID:24949970 MGI:MGI:5603233 NCBI chr10:5,002,196...5,196,914
Ensembl chr10:5,009,826...5,196,892 		JBrowse link
G Rnf41 ring finger protein 41 ISO MGI:MGI:1921624 (MGI:MGI:5603233|PMID:24949970) RGD PMID:24949970 MGI:MGI:5603233 NCBI chr 7:2,827,242...2,854,230
Ensembl chr 7:2,827,247...2,852,681 		JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase ISO MGI:MGI:5319187 (MGI:MGI:5319065|PMID:22044588) RGD PMID:22044588 MGI:MGI:5319065 NCBI chr 4:159,635,145...159,654,108
Ensembl chr 4:159,635,153...159,654,063 		JBrowse link
G Tp53 tumor protein p53 ISO MGI:MGI:1857263 (MGI:MGI:5319065|PMID:22044588) RGD PMID:22044588 MGI:MGI:5319065 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449 		JBrowse link
G Usp30 ubiquitin specific peptidase 30 IMP RGD PMID:24896179 RGD:13208875 NCBI chr12:48,262,663...48,316,580
Ensembl chr12:48,262,658...48,316,722 		JBrowse link
negative regulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htra2 HtrA serine peptidase 2 ISO (MGI:MGI:5581539|PMID:24709290) RGD PMID:24709290 MGI:MGI:5581539 NCBI chr 4:113,883,671...113,886,833
Ensembl chr 4:113,883,670...113,886,994 		JBrowse link
negative regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps13c vacuolar protein sorting 13 homolog C ISO
ISS		 (PMID:26942284)
GO_REF:0000024		 RGD
ParkinsonsUK-UCL		 PMID:26942284 GO_REF:0000024 NCBI chr 8:73,682,814...73,843,290
Ensembl chr 8:73,682,887...73,842,928 		JBrowse link
parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac6 histone deacetylase 6 ISO UniProtKB:Q9JK66|UniProtKB:Q9Z2V5 (PMID:20457763) RGD PMID:20457763 NCBI chr  X:15,295,372...15,316,673
Ensembl chr  X:15,295,473...15,316,671 		JBrowse link
G Mfn2 mitofusin 2 ISO (MGI:MGI:5498413|PMID:23620051) RGD PMID:23620051 MGI:MGI:5498413 NCBI chr 5:164,684,244...164,715,414
Ensembl chr 5:164,684,509...164,714,145 		JBrowse link
G Optn optineurin IEA
ISO		 GO_REF:0000107
(PMID:25294927)		 Ensembl
RGD		 PMID:25294927 GO_REF:0000107 NCBI chr17:77,167,700...77,218,374
Ensembl chr17:77,167,740...77,218,389 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase ISO (PMID:19029340) RGD PMID:19029340 NCBI chr 1:48,880,015...50,069,998 JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 ISO (MGI:MGI:5298125|PMID:22020285) RGD PMID:22020285 MGI:MGI:5298125 NCBI chr12:11,433,815...11,526,465
Ensembl chr12:11,407,213...11,526,465 		JBrowse link
piecemeal microautophagy of the nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg13 autophagy related 13 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:80,580,549...80,614,554
Ensembl chr 3:80,581,247...80,601,410 		JBrowse link
G Atg2a autophagy related 2A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:221,612,584...221,632,291
Ensembl chr 1:221,612,584...221,632,267 		JBrowse link
G Atg2b autophagy related 2B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:129,449,451...129,519,599
Ensembl chr 6:129,449,449...129,509,720 		JBrowse link
G Atg7 autophagy related 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:146,570,113...146,777,093
Ensembl chr 4:146,598,413...146,777,124 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:13,033,918...13,097,369
Ensembl chr 5:13,033,918...13,097,341 		JBrowse link
positive regulation by symbiont of host autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg5 autophagy related 5 ISO
IEA		 UniProtKB:O95352 (PMID:28389568)
GO_REF:0000107		 RGD
Ensembl		 PMID:28389568 GO_REF:0000107 NCBI chr20:49,301,783...49,393,147
Ensembl chr20:49,318,308...49,393,140 		JBrowse link
G Atg7 autophagy related 7 ISO UniProtKB:Q9H1Y0 (PMID:28389568) RGD PMID:28389568 NCBI chr 4:146,570,113...146,777,093
Ensembl chr 4:146,598,413...146,777,124 		JBrowse link
G Irgm immunity-related GTPase M ISO (MGI:MGI:3656111|PMID:16888103)
(PMID:16888103), (PMID:28389568)		 RGD PMID:16888103, PMID:28389568 MGI:MGI:3656111 NCBI chr10:34,213,885...34,221,968
Ensembl chr10:34,213,936...34,221,928 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO UniProtKB:Q8IYT8 (PMID:28389568) RGD PMID:28389568 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 ISO UniProtKB:O75385 (PMID:28389568) RGD PMID:28389568 NCBI chr10:48,050,079...48,129,377
Ensembl chr10:48,050,803...48,129,377 		JBrowse link
positive regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag3 BAG cochaperone 3 ISO (PMID:18006506) RGD PMID:18006506 NCBI chr 1:199,941,258...199,965,191
Ensembl chr 1:199,941,161...199,965,191 		JBrowse link
G Hspb8 heat shock protein family B (small) member 8 ISO (PMID:18006506) RGD PMID:18006506 NCBI chr12:45,905,371...45,920,014
Ensembl chr12:45,905,371...45,920,013 		JBrowse link
G Htt huntingtin IEA
ISO		 GO_REF:0000107
(PMID:25686248)		 Ensembl
RGD		 PMID:25686248 GO_REF:0000107 NCBI chr14:81,105,139...81,254,637
Ensembl chr14:81,105,139...81,254,637 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 IMP RGD PMID:25561470 RGD:11561937 NCBI chr10:89,209,944...89,225,297
Ensembl chr10:89,209,940...89,225,297 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 ISO
IEA		 (PMID:21072319)
GO_REF:0000107		 RGD
Ensembl		 PMID:21072319 GO_REF:0000107 NCBI chr 2:211,243,398...211,323,283
Ensembl chr 2:211,246,068...211,322,719 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 ISO (PMID:25484098) RGD PMID:25484098 NCBI chr 3:11,970,401...12,009,463
Ensembl chr 3:11,972,813...12,007,570 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha ISO (PMID:25578879) RGD PMID:25578879 NCBI chr17:85,533,056...85,748,843 JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta ISO (PMID:25578879) RGD PMID:25578879 NCBI chr10:85,655,223...85,684,138
Ensembl chr10:85,658,324...85,684,138 		JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma ISO
IEA		 (PMID:25578879)
GO_REF:0000107		 RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr 7:70,483,948...70,498,995
Ensembl chr 7:70,483,942...70,498,995 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 ISO
ISS
IEA		 (PMID:25495476)
GO_REF:0000024
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:25495476 GO_REF:0000024, GO_REF:0000107 NCBI chr13:44,578,208...44,649,876
Ensembl chr13:44,615,553...44,648,620 		JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 ISO
ISS
IEA		 (PMID:25495476)
GO_REF:0000024
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:25495476 GO_REF:0000024, GO_REF:0000107 NCBI chr13:103,157,806...103,229,010
Ensembl chr13:103,157,806...103,228,423 		JBrowse link
G Ralb RAS like proto-oncogene B IEA
ISO		 GO_REF:0000107
(PMID:24056301)		 Ensembl
RGD		 PMID:24056301 GO_REF:0000107 NCBI chr13:35,494,716...35,531,503
Ensembl chr13:35,494,721...35,511,020 		JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 IEA
ISO		 GO_REF:0000107
(MGI:MGI:5634888|PMID:21068542)
(PMID:21068542)		 Ensembl
RGD		 PMID:21068542 GO_REF:0000107, MGI:MGI:5634888 NCBI chr 2:250,709,812...250,744,216
Ensembl chr 2:250,709,439...250,744,196 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 IMP RGD PMID:23448468 RGD:13208863 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702 		JBrowse link
positive regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07025818.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:51,786,459...51,787,151 JBrowse link
G Adrb2 adrenoceptor beta 2 ISO
ISS
IEA		 (PMID:23708524)
GO_REF:0000024
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:23708524 GO_REF:0000024, GO_REF:0000107 NCBI chr18:57,513,792...57,515,834
Ensembl chr18:57,513,793...57,515,834 		JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 ISO (PMID:25771791) RGD PMID:25771791 NCBI chr10:83,935,087...83,963,750 JBrowse link
G Clec16a C-type lectin domain containing 16A ISO MGI:MGI:5648633 (MGI:MGI:5603233|PMID:24949970) RGD PMID:24949970 MGI:MGI:5603233 NCBI chr10:5,002,196...5,196,914
Ensembl chr10:5,009,826...5,196,892 		JBrowse link
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 ISO
IBA		 (PMID:26468287)
PMID:21873635		 RGD PMID:26468287, PMID:21873635 RGD:13792537 NCBI chr 8:132,844,042...132,910,905
Ensembl chr 8:132,844,043...132,911,193 		JBrowse link
G Irgm immunity-related GTPase M ISO (PMID:16888103)
(MGI:MGI:3656111|PMID:16888103)		 RGD PMID:16888103 MGI:MGI:3656111 NCBI chr10:34,213,885...34,221,968
Ensembl chr10:34,213,936...34,221,928 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:47,019,326...47,026,465
Ensembl chr10:47,018,974...47,026,465 		JBrowse link
positive regulation of autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07009373.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:94,902,666...94,903,226 JBrowse link
G AABR07019870.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr13:5,480,150...5,480,629 JBrowse link
G AABR07025074.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:27,472,051...27,472,687 JBrowse link
G AABR07029613.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:40,994,237...40,994,872 JBrowse link
G AABR07035218.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr12:7,081,895...7,094,002 JBrowse link
G AABR07054355.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:149,741,312...149,741,953 JBrowse link
G AABR07054358.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:149,790,856...149,791,497 JBrowse link
G AABR07060165.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:60,547,401...60,548,021 JBrowse link
G AABR07060287.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:66,091,641...66,092,259 JBrowse link
G AABR07067274.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 9:37,593,032...37,593,603 JBrowse link
G AC094217.2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:31,436,712...31,437,203 JBrowse link
G AC108595.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:132,983,472...132,984,110 JBrowse link
G Ager advanced glycosylation end product-specific receptor IMP RGD PMID:22293957 RGD:7245565 NCBI chr20:4,363,152...4,366,079
Ensembl chr20:4,363,152...4,366,079 		JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 IMP RGD PMID:25117440 RGD:11552604 NCBI chr 3:80,634,470...80,830,068
Ensembl chr 3:80,634,470...80,830,068 		JBrowse link
G Atf6 activating transcription factor 6 ISO (PMID:28747345) RGD PMID:28747345 NCBI chr13:89,053,457...89,242,531
Ensembl chr13:89,055,983...89,242,443 		JBrowse link
G Atg16l1 autophagy related 16-like 1 ISO (MGI:MGI:6271293|PMID:30208760) RGD PMID:30208760 MGI:MGI:6271293 NCBI chr 9:94,879,876...94,915,231
Ensembl chr 9:94,879,745...94,915,228 		JBrowse link
G Atg7 autophagy related 7 IDA
IMP		 RGD PMID:24674959, PMID:25639566 RGD:11553823, RGD:11553824 NCBI chr 4:146,570,113...146,777,093
Ensembl chr 4:146,598,413...146,777,124 		JBrowse link
G Becn1 beclin 1 IMP RGD PMID:24674959 RGD:11553823 NCBI chr10:89,209,944...89,225,297
Ensembl chr10:89,209,940...89,225,297 		JBrowse link
G Dapk1 death associated protein kinase 1 ISO (PMID:22095288) RGD PMID:22095288 NCBI chr17:4,297,038...4,454,941
Ensembl chr17:4,297,224...4,454,778 		JBrowse link
G Dcn decorin ISO (PMID:23798385) RGD PMID:23798385 NCBI chr 7:38,742,250...38,782,282
Ensembl chr 7:38,742,051...38,782,323 		JBrowse link
G Dhrsx dehydrogenase/reductase X-linked ISO
IBA		 (PMID:25076851)
PMID:21873635		 RGD PMID:25076851, PMID:21873635 RGD:13792537 NCBI chr12:18,516,858...18,521,235
Ensembl chr12:18,516,946...18,521,892 		JBrowse link
G Flcn folliculin ISO
ISS		 (PMID:25126726)
GO_REF:0000024		 RGD
UniProt		 PMID:25126726 GO_REF:0000024 NCBI chr10:46,153,185...46,172,331
Ensembl chr10:46,153,188...46,172,309 		JBrowse link
G Foxo1 forkhead box O1 ISO
ISS		 (PMID:20543840)
GO_REF:0000024		 RGD
UniProt		 PMID:20543840 GO_REF:0000024 NCBI chr 2:141,451,234...141,527,016
Ensembl chr 2:141,451,234...141,527,016 		JBrowse link
G Foxo3 forkhead box O3 ISO (MGI:MGI:3771642|PMID:18054316), (MGI:MGI:3771681|PMID:18054315) RGD PMID:18054315, PMID:18054316 MGI:MGI:3771642, MGI:MGI:3771681 NCBI chr20:46,428,078...46,519,156
Ensembl chr20:46,428,124...46,519,144 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha ISS
ISO		 GO_REF:0000024
(MGI:MGI:5319706|PMID:22539723)		 UniProt
RGD		 PMID:22539723 GO_REF:0000024, MGI:MGI:5319706 NCBI chr 1:82,097,244...82,108,238
Ensembl chr 1:82,097,247...82,108,203 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISS
ISO		 GO_REF:0000024
RNAcentral:URS0000554A4F_10090 (MGI:MGI:5319706|PMID:22539723), (MGI:MGI:5825416|PMID:26160071)		 UniProt
RGD		 PMID:22539723, PMID:26160071 GO_REF:0000024, MGI:MGI:5319706, MGI:MGI:5825416 NCBI chr11:65,060,884...65,208,842
Ensembl chr11:65,066,235...65,209,268 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO (MGI:MGI:3796473|PMID:18281291) RGD PMID:18281291 MGI:MGI:3796473 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052 		JBrowse link
G Hmg1l1 high-mobility group (nonhistone chromosomal) protein 1-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:59,984,234...59,985,494
Ensembl chr19:59,984,234...59,985,494 		JBrowse link
G Hmgb1 high mobility group box 1 IMP
ISO
IBA		 (MGI:MGI:5634889|PMID:20819940)
PMID:21873635
(PMID:20819940)		 RGD PMID:20819940, PMID:23604926, PMID:21873635 MGI:MGI:5634889, RGD:10402086, RGD:13792537 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237 		JBrowse link
G Hmgb1-ps3 high mobility group box 1, pseudogene 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:132,982,959...132,984,167 JBrowse link
G Ifng interferon gamma ISS
ISO		 GO_REF:0000024
(PMID:23629966), (PMID:26347139)		 UniProt
RGD		 PMID:23629966, PMID:26347139 GO_REF:0000024 NCBI chr 7:61,337,383...61,341,419
Ensembl chr 7:61,337,381...61,341,419 		JBrowse link
G Irgm immunity-related GTPase M ISO (PMID:25891078) RGD PMID:25891078 NCBI chr10:34,213,885...34,221,968
Ensembl chr10:34,213,936...34,221,928 		JBrowse link
G Kat5 lysine acetyltransferase 5 ISS
ISO
IEA		 GO_REF:0000024
(MGI:MGI:5319706|PMID:22539723)
(PMID:30704899)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:22539723, PMID:30704899 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5319706 NCBI chr 1:220,967,795...220,974,596
Ensembl chr 1:220,967,796...220,974,597 		JBrowse link
G LOC100911637 high mobility group protein B1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:149,741,055...149,741,953 JBrowse link
G LOC108349189 high mobility group protein B1 pseudogene IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:115,351,012...115,351,755
Ensembl chr  X:115,351,114...115,351,755 		JBrowse link
G LOC108350839 high mobility group protein B1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:92,431,517...92,432,354
Ensembl chr 4:92,431,710...92,432,354 		JBrowse link
G LOC690521 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:149,790,599...149,791,497 JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 ISO
IBA		 (MGI:MGI:4454597|PMID:20457918)
PMID:21873635
(PMID:22012985)		 RGD PMID:20457918, PMID:22012985, PMID:21873635 MGI:MGI:4454597, RGD:13792537 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IDA RGD PMID:26581593 RGD:12879823 NCBI chr 8:69,134,218...69,722,573
Ensembl chr 8:69,134,223...69,164,758 		JBrowse link
G Mefv MEFV innate immuity regulator, pyrin ISO
ISS		 (PMID:26347139)
GO_REF:0000024		 RGD
UniProt		 PMID:26347139 GO_REF:0000024 NCBI chr10:12,045,813...12,056,229
Ensembl chr10:12,046,541...12,056,311 		JBrowse link
G Mid2 midline 2 ISO (PMID:26347139) RGD PMID:26347139 NCBI chr  X:112,019,897...112,121,980
Ensembl chr  X:112,020,646...112,121,943 		JBrowse link
G Mtdh metadherin ISO (PMID:21127263) RGD PMID:21127263 NCBI chr 7:72,771,018...72,830,599
Ensembl chr 7:72,772,440...72,827,908 		JBrowse link
G Nprl2 NPR2-like, GATOR1 complex subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:116,297,950...116,301,123
Ensembl chr 8:116,297,950...116,301,122 		JBrowse link
G Optn optineurin ISO (PMID:21617041) RGD PMID:21617041 NCBI chr17:77,167,700...77,218,374
Ensembl chr17:77,167,740...77,218,389 		JBrowse link
G Ormdl3 ORMDL sphingolipid biosynthesis regulator 3 ISO MGI:MGI:6369059 (MGI:MGI:6099440|PMID:28747345)
(PMID:28747345)		 RGD PMID:28747345 MGI:MGI:6099440 NCBI chr10:86,545,910...86,554,478
Ensembl chr10:86,547,339...86,554,478 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha ISO (PMID:28910396) RGD PMID:28910396 NCBI chr 1:185,210,922...185,326,314
Ensembl chr 1:185,210,922...185,326,314 		JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase ISO (MGI:MGI:4361989|PMID:17476689) RGD PMID:17476689 MGI:MGI:4361989 NCBI chr  X:15,462,621...15,467,890
Ensembl chr  X:15,462,016...15,467,875 		JBrowse link
G Plekhf1 pleckstrin homology and FYVE domain containing 1 ISO (PMID:22115783) RGD PMID:22115783 NCBI chr 1:94,609,041...94,616,565
Ensembl chr 1:94,609,377...94,610,854 		JBrowse link
G Plk2 polo-like kinase 2 ISO (PMID:23983262) RGD PMID:23983262 NCBI chr 2:41,911,143...41,916,901
Ensembl chr 2:41,911,131...41,916,901 		JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 ISO
ISS		 (MGI:MGI:5285135|PMID:21258367)
(PMID:22012985), (PMID:26103054)
GO_REF:0000024		 RGD
UniProt		 PMID:21258367, PMID:22012985, PMID:26103054 GO_REF:0000024, MGI:MGI:5285135 NCBI chr 2:54,857,688...54,893,404
Ensembl chr 2:54,857,688...54,893,404 		JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5285135|PMID:21258367)		 Ensembl
UniProt
RGD		 PMID:21258367 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5285135 NCBI chr 5:124,568,845...124,642,569
Ensembl chr 5:124,574,079...124,642,569 		JBrowse link
G Prkd1 protein kinase D1 ISO (PMID:22095288) RGD PMID:22095288 NCBI chr 6:71,035,017...71,349,531
Ensembl chr 6:71,035,332...71,349,249 		JBrowse link
G RGD1563668 similar to High mobility group protein 1 (HMG-1) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:40,994,237...40,994,990 JBrowse link
G RGD1565762 similar to High mobility group protein 1 (HMG-1) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:5,480,069...5,480,782 JBrowse link
G Rnf152 ring finger protein 152 ISO
IBA
ISS		 (PMID:25936802)
PMID:21873635
GO_REF:0000024
(MGI:MGI:5644195|PMID:25936802)		 RGD
UniProt		 PMID:25936802, PMID:21873635 GO_REF:0000024, MGI:MGI:5644195, RGD:13792537 NCBI chr13:25,183,295...25,262,785
Ensembl chr13:25,186,106...25,262,469 		JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 ISO
IEA		 UniProtKB:Q14457 (PMID:27853422)
GO_REF:0000107		 RGD
Ensembl		 PMID:27853422 GO_REF:0000107 NCBI chr18:1,273,490...1,390,790
Ensembl chr18:1,273,453...1,390,190 		JBrowse link
G Sh3bp4 SH3-domain binding protein 4 IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:22575674)		 Ensembl
UniProt
RGD		 PMID:22575674 GO_REF:0000024, GO_REF:0000107 NCBI chr 9:96,210,750...96,288,903
Ensembl chr 9:96,210,750...96,288,903 		JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 ISO (PMID:17891140)
(MGI:MGI:3770552|PMID:17891140)		 RGD PMID:17891140 MGI:MGI:3770552 NCBI chr 2:250,709,812...250,744,216
Ensembl chr 2:250,709,439...250,744,196 		JBrowse link
G Stk11 serine/threonine kinase 11 ISO
IEA		 (PMID:23878245)
GO_REF:0000107		 RGD
Ensembl		 PMID:23878245 GO_REF:0000107 NCBI chr 7:12,440,751...12,457,513
Ensembl chr 7:12,440,751...12,457,513 		JBrowse link
G Svip small VCP interacting protein ISO
IBA		 (PMID:21909394)
PMID:21873635		 RGD PMID:21909394, PMID:21873635 RGD:13792537 NCBI chr 1:107,368,117...107,373,807
Ensembl chr 1:107,368,117...107,373,807 		JBrowse link
G Tfeb transcription factor EB ISO (PMID:21617040), (PMID:22576015), (PMID:23434374) RGD PMID:21617040, PMID:22576015, PMID:23434374 NCBI chr 9:15,208,141...15,264,101
Ensembl chr 9:15,207,822...15,214,596 		JBrowse link
G Ticam1 toll-like receptor adaptor molecule 1 ISO (MGI:MGI:3718934|PMID:17658277) RGD PMID:17658277 MGI:MGI:3718934 NCBI chr 9:10,780,185...10,790,280 JBrowse link
G Tlr9 toll-like receptor 9 IDA RGD PMID:18632594 RGD:2301341 NCBI chr 8:114,916,122...114,920,171
Ensembl chr 8:114,916,122...114,920,171 		JBrowse link
G Tmem59 transmembrane protein 59 ISO
IBA		 (PMID:23376921)
PMID:21873635		 RGD PMID:23376921, PMID:21873635 RGD:13792537 NCBI chr 5:126,783,061...126,804,177
Ensembl chr 5:126,783,061...126,804,175 		JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 IEA
ISO
ISS		 GO_REF:0000107
(PMID:22421968), (PMID:22470510)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:22421968, PMID:22470510 GO_REF:0000024, GO_REF:0000107 NCBI chr 5:24,402,895...24,419,651
Ensembl chr 5:24,410,863...24,416,888 		JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:150,910,398...150,918,525
Ensembl chr 3:150,910,398...150,918,525 		JBrowse link
G Tpcn1 two pore segment channel 1 ISO
IEA		 (PMID:22012985)
GO_REF:0000107		 RGD
Ensembl		 PMID:22012985 GO_REF:0000107 NCBI chr12:41,507,784...41,566,847
Ensembl chr12:41,543,696...41,566,847 		JBrowse link
G Trim14 tripartite motif-containing 14 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:62,128,941...62,154,424
Ensembl chr 5:62,128,941...62,153,786 		JBrowse link
G Trim21 tripartite motif-containing 21 ISO
IBA		 (PMID:26347139)
PMID:21873635		 RGD PMID:26347139, PMID:21873635 RGD:13792537 NCBI chr 1:167,686,148...167,708,735
Ensembl chr 1:167,686,173...167,708,714 		JBrowse link
G Trim27 tripartite motif-containing 27 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:45,613,863...45,626,212
Ensembl chr17:45,613,864...45,626,212 		JBrowse link
G Trim30c tripartite motif-containing 30C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:169,492,786...169,514,195
Ensembl chr 1:169,491,920...169,513,537 		JBrowse link
G Trim34 tripartite motif-containing 34 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:169,433,539...169,445,041
Ensembl chr 1:169,433,539...169,445,041 		JBrowse link
G Trim5 tripartite motif-containing 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:169,446,774...169,463,760
Ensembl chr 1:169,446,805...169,534,896 		JBrowse link
G Trim6 tripartite motif containing 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:169,410,084...169,423,305
Ensembl chr 1:169,410,115...169,423,283 		JBrowse link
G Trim65 tripartite motif-containing 65 ISO
IBA		 (PMID:26347139)
PMID:21873635		 RGD PMID:26347139, PMID:21873635 RGD:13792537 NCBI chr10:104,674,956...104,681,055
Ensembl chr10:104,674,932...104,681,377 		JBrowse link
G Trim68 tripartite motif containing 68 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:167,835,773...167,849,880
Ensembl chr 1:167,835,647...167,849,834 		JBrowse link
G Trim8 tripartite motif-containing 8 ISO (PMID:26347139) RGD PMID:26347139 NCBI chr 1:266,255,797...266,270,694
Ensembl chr 1:266,255,797...266,270,694 		JBrowse link
G Triml1 tripartite motif family-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:52,169,426...52,177,548
Ensembl chr16:52,169,450...52,177,586 		JBrowse link
G Triml2 tripartite motif family-like 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:52,116,975...52,127,591
Ensembl chr16:52,116,975...52,127,591 		JBrowse link
G Tsc2 TSC complex subunit 2 ISO (MGI:MGI:5509101|PMID:23878245) RGD PMID:23878245 MGI:MGI:5509101 NCBI chr10:13,962,006...13,996,684
Ensembl chr10:13,961,947...13,996,584 		JBrowse link
G Ufl1 Ufm1-specific ligase 1 ISS
ISO		 GO_REF:0000024
(MGI:MGI:5818653|PMID:25952549)		 UniProt
RGD		 PMID:25952549 GO_REF:0000024, MGI:MGI:5818653 NCBI chr 5:39,616,479...39,650,894
Ensembl chr 5:39,615,956...39,650,895 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO (MGI:MGI:5319706|PMID:22539723)
(PMID:25126726)		 RGD PMID:22539723, PMID:25126726 MGI:MGI:5319706 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702 		JBrowse link
G Xbp1 X-box binding protein 1 ISO (PMID:23184933) RGD PMID:23184933 NCBI chr14:85,753,736...85,758,820
Ensembl chr14:85,753,760...85,758,145 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A ISO (PMID:22739135)
(MGI:MGI:5487497|PMID:22739135)		 RGD PMID:22739135 MGI:MGI:5487497 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165 		JBrowse link
positive regulation of autophagy in response to ER overload term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2l11 BCL2 like 11 IMP RGD PMID:25772147 RGD:13782257 NCBI chr 3:120,726,906...120,764,192
Ensembl chr 3:120,726,906...120,764,192 		JBrowse link
G Bid BH3 interacting domain death agonist IMP RGD PMID:25772147 RGD:13782257 NCBI chr 4:153,439,812...153,465,247
Ensembl chr 4:153,442,218...153,465,203 		JBrowse link
G Ddit3 DNA-damage inducible transcript 3 IMP RGD PMID:25772147 RGD:13782257 NCBI chr 7:70,578,564...70,585,074
Ensembl chr 7:70,580,198...70,585,084 		JBrowse link
positive regulation of autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2 interacting protein 3 IMP RGD PMID:23698117 RGD:11561968 NCBI chr 1:211,248,098...211,265,282
Ensembl chr 1:211,248,098...211,265,282 		JBrowse link
G Fbxo7 F-box protein 7 ISO
IBA
IMP		 (PMID:26310625)
PMID:21873635		 RGD PMID:26310625, PMID:21873635, PMID:26310625 RGD:13792537, RGD:11536096 NCBI chr 7:23,815,246...23,843,505
Ensembl chr 7:23,815,245...23,843,634 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO
IEA		 (MGI:MGI:3796473|PMID:18281291)
GO_REF:0000107		 RGD
Ensembl		 PMID:18281291 GO_REF:0000107, MGI:MGI:3796473 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052 		JBrowse link
G Htt huntingtin IEA
ISO		 GO_REF:0000107
(PMID:25686248)		 Ensembl
RGD		 PMID:25686248 GO_REF:0000107 NCBI chr14:81,105,139...81,254,637
Ensembl chr14:81,105,139...81,254,637 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase ISO (PMID:26310625) RGD PMID:26310625 NCBI chr 1:48,880,015...50,069,998 JBrowse link
positive regulation of autophagy of mitochondrion in response to mitochondrial depolarization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5if1 ATP synthase inhibitory factor subunit 1 ISO (PMID:24005319) RGD PMID:24005319 NCBI chr 5:150,719,570...150,723,287
Ensembl chr 5:150,719,569...150,723,321 		JBrowse link
G Gba glucosylceramidase beta ISO (MGI:MGI:5501380|PMID:23707074) RGD PMID:23707074 MGI:MGI:5501380 NCBI chr 2:188,511,781...188,522,602
Ensembl chr 2:188,516,582...188,522,601 		JBrowse link
G Hk2 hexokinase 2 ISO (PMID:23962723) RGD PMID:23962723 NCBI chr 4:113,559,396...113,609,897
Ensembl chr 4:113,559,427...113,610,243 		JBrowse link
G Mul1 mitochondrial E3 ubiquitin protein ligase 1 ISO (MGI:MGI:5581539|PMID:24709290) RGD PMID:24709290 MGI:MGI:5581539 NCBI chr 5:156,855,105...156,864,517
Ensembl chr 5:156,850,206...156,864,517 		JBrowse link
G Pink1 PTEN induced kinase 1 IMP RGD PMID:25154397 RGD:12904014 NCBI chr 5:156,677,146...156,689,258
Ensembl chr 5:156,677,146...156,689,415 		JBrowse link
positive regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plk3 polo-like kinase 3 ISO (PMID:27344333) RGD PMID:27344333 NCBI chr 5:135,997,725...136,002,900
Ensembl chr 5:135,997,725...136,002,900 		JBrowse link
positive regulation of lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 ISO
ISS
IEA		 (PMID:23708524)
GO_REF:0000024
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:23708524 GO_REF:0000024, GO_REF:0000107 NCBI chr18:57,513,792...57,515,834
Ensembl chr18:57,513,793...57,515,834 		JBrowse link
G Htt huntingtin IEA
ISO		 GO_REF:0000107
(PMID:25686248)		 Ensembl
RGD		 PMID:25686248 GO_REF:0000107 NCBI chr14:81,105,139...81,254,637
Ensembl chr14:81,105,139...81,254,637 		JBrowse link
G Sesn2 sestrin 2 ISO MGI:MGI:3587950 (MGI:MGI:5444071|PMID:22958918) RGD PMID:22958918 MGI:MGI:5444071 NCBI chr 5:150,684,891...150,703,846
Ensembl chr 5:150,684,133...150,704,117 		JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 ISO (PMID:25332431) RGD PMID:25332431 NCBI chr17:11,856,525...11,895,566
Ensembl chr17:11,856,525...11,895,566 		JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 ISO (PMID:25332431) RGD PMID:25332431 NCBI chr 6:111,334,408...111,417,960
Ensembl chr 6:111,339,136...111,417,954 		JBrowse link
positive regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2 interacting protein 3 ISO UniProtKB:O60238 (PMID:19273585) RGD PMID:19273585 NCBI chr 1:211,248,098...211,265,282
Ensembl chr 1:211,248,098...211,265,282 		JBrowse link
G Bnip3l BCL2 interacting protein 3 like ISO UniProtKB:Q12983 (PMID:19273585) RGD PMID:19273585 NCBI chr15:43,643,897...43,667,123
Ensembl chr15:43,643,897...43,667,029 		JBrowse link
G Dcn decorin ISO UniProtKB:P35968 (PMID:23798385) RGD PMID:23798385 NCBI chr 7:38,742,250...38,782,282
Ensembl chr 7:38,742,051...38,782,323 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin ISO MGI:MGI:102548|MGI:MGI:2182627 (MGI:MGI:4457987|PMID:20453062)
(PMID:20453062)		 RGD PMID:20453062 MGI:MGI:4457987 NCBI chr 1:5,448,958...5,571,512
Ensembl chr 1:5,448,958...5,571,512 		JBrowse link
G Gnai3 G protein subunit alpha i3 ISO (PMID:12642577) RGD PMID:12642577 NCBI chr 2:210,896,779...210,934,733
Ensembl chr 2:210,896,656...210,934,749 		JBrowse link
G Gpsm1 G-protein signaling modulator 1 ISO (PMID:12642577) RGD PMID:12642577 NCBI chr 3:3,767,394...3,794,360
Ensembl chr 3:3,767,394...3,794,359 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO
IEA		 MGI:MGI:2386679 (MGI:MGI:3847365|PMID:19273585)
GO_REF:0000107		 RGD
Ensembl		 PMID:19273585 GO_REF:0000107, MGI:MGI:3847365 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052 		JBrowse link
G Hmox1 heme oxygenase 1 ISO MGI:MGI:2429784 (MGI:MGI:5430482|PMID:20705711) RGD PMID:20705711 MGI:MGI:5430482 NCBI chr19:14,508,634...14,515,455
Ensembl chr19:14,508,616...14,515,456 		JBrowse link
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma ISO (MGI:MGI:5819337|PMID:23778976) RGD PMID:23778976 MGI:MGI:5819337 NCBI chr  X:156,254,187...156,280,046
Ensembl chr  X:156,257,173...156,270,748 		JBrowse link
G Il4 interleukin 4 ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(MGI:MGI:5702366|PMID:26416964)		 UniProt
RGD		 PMID:26416964, PMID:21873635 GO_REF:0000024, MGI:MGI:5702366, RGD:13792537 NCBI chr10:38,963,979...38,969,531
Ensembl chr10:38,963,979...38,969,531 		JBrowse link
G Kdr kinase insert domain receptor ISO
IEA		 UniProtKB:P07585 (PMID:23798385)
GO_REF:0000107		 RGD
Ensembl		 PMID:23798385 GO_REF:0000107 NCBI chr14:34,727,677...34,787,127
Ensembl chr14:34,727,623...34,787,183 		JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator ISO (PMID:22354037) RGD PMID:22354037 NCBI chr10:43,435,738...43,501,186
Ensembl chr10:43,446,526...43,498,066 		JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 ISO (MGI:MGI:5819337|PMID:23778976) RGD PMID:23778976 MGI:MGI:5819337 NCBI chr 5:47,183,142...47,244,424
Ensembl chr 5:47,186,558...47,244,416 		JBrowse link
G Pafah1b2 platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 ISO (PMID:22354037) RGD PMID:22354037 NCBI chr 8:50,256,969...50,310,043
Ensembl chr 8:50,259,248...50,277,797 		JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase ISO (MGI:MGI:4361989|PMID:17476689) RGD PMID:17476689 MGI:MGI:4361989 NCBI chr  X:15,462,621...15,467,890
Ensembl chr  X:15,462,016...15,467,875 		JBrowse link
G Pink1 PTEN induced kinase 1 ISO (PMID:20871098) RGD PMID:20871098 NCBI chr 5:156,677,146...156,689,258
Ensembl chr 5:156,677,146...156,689,415 		JBrowse link
G Rab12 RAB12, member RAS oncogene family ISO (MGI:MGI:5574288|PMID:23357852) RGD PMID:23357852 MGI:MGI:5574288 NCBI chr 9:114,683,985...114,709,613
Ensembl chr 9:114,684,039...114,709,546 		JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 IEA
ISO
ISS		 GO_REF:0000107
UniProtKB:Q96DA2 (PMID:27103069), (PMID:27334615)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:27103069, PMID:27334615 GO_REF:0000024, GO_REF:0000107 NCBI chr 5:50,666,444...50,691,523
Ensembl chr 5:50,668,040...50,684,409 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 ISO
IBA		 (PMID:26416964)
PMID:21873635		 RGD PMID:26416964, PMID:21873635 RGD:13792537 NCBI chr 9:81,401,080...81,422,016
Ensembl chr 9:81,402,124...81,421,990 		JBrowse link
G Scoc short coiled-coil protein ISO
ISS		 (PMID:22354037)
GO_REF:0000024		 RGD
GO_Central		 PMID:22354037 GO_REF:0000024 NCBI chr19:24,584,435...24,614,167
Ensembl chr19:24,584,455...24,614,019 		JBrowse link
G Sesn1 sestrin 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:46,667,116...46,758,306
Ensembl chr20:46,667,121...46,758,305 		JBrowse link
G Sesn2 sestrin 2 ISO
IBA		 (PMID:23274085)
PMID:21873635		 RGD PMID:23274085, PMID:21873635 RGD:13792537 NCBI chr 5:150,684,891...150,703,846
Ensembl chr 5:150,684,133...150,704,117 		JBrowse link
G Sesn3 sestrin 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:12,823,060...12,878,749
Ensembl chr 8:12,823,155...12,872,705 		JBrowse link
G Sirt1 sirtuin 1 ISO
IEA		 (PMID:18296641)
GO_REF:0000107
(MGI:MGI:3776699|PMID:18296641), (MGI:MGI:4940431|PMID:21189328)		 RGD
Ensembl		 PMID:18296641, PMID:21189328 GO_REF:0000107, MGI:MGI:3776699, MGI:MGI:4940431 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(MGI:MGI:6305034|PMID:30568238)
(PMID:30568238), (PMID:30842662)		 UniProt
RGD		 PMID:30568238, PMID:30842662, PMID:21873635 GO_REF:0000024, MGI:MGI:6305034, RGD:13792537 NCBI chr18:28,529,537...28,535,828
Ensembl chr18:28,529,576...28,535,828 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit ISO (PMID:22354037) RGD PMID:22354037 NCBI chr 1:85,437,780...85,466,854
Ensembl chr 1:85,437,780...85,466,854 		JBrowse link
G Tbk1 TANK-binding kinase 1 ISO (PMID:27103069) RGD PMID:27103069 NCBI chr 7:63,655,247...63,687,978
Ensembl chr 7:63,655,247...63,687,978 		JBrowse link
G Trim13 tripartite motif-containing 13 ISO
IBA		 (PMID:22178386)
PMID:21873635		 RGD PMID:22178386, PMID:21873635 RGD:13792537 NCBI chr15:41,897,191...41,936,545
Ensembl chr15:41,927,241...41,935,718 		JBrowse link
G Tsc1 TSC complex subunit 1 IDA RGD PMID:23435171 RGD:10448950 NCBI chr 3:7,219,955...7,269,063
Ensembl chr 3:7,237,192...7,265,145 		JBrowse link
G Tsc2 TSC complex subunit 2 ISO
IEA		 UniProtKB:Q61037 (PMID:23778976)
(MGI:MGI:4457987|PMID:20453062), (MGI:MGI:5819337|PMID:23778976)
GO_REF:0000107		 RGD
Ensembl		 PMID:20453062, PMID:23778976 GO_REF:0000107, MGI:MGI:4457987, MGI:MGI:5819337 NCBI chr10:13,962,006...13,996,684
Ensembl chr10:13,961,947...13,996,584 		JBrowse link
G Wac WW domain containing adaptor with coiled-coil ISO (PMID:22354037) RGD PMID:22354037 NCBI chr17:60,887,606...60,946,630
Ensembl chr17:60,888,017...60,946,426 		JBrowse link
positive regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prkn parkin RBR E3 ubiquitin protein ligase IMP RGD PMID:28608965 RGD:13432560 NCBI chr 1:48,880,015...50,069,998 JBrowse link
G Vdac1 voltage-dependent anion channel 1 ISO (PMID:32047033) RGD PMID:32047033 NCBI chr10:37,724,915...37,752,827
Ensembl chr10:37,724,915...37,752,826 		JBrowse link
G Vps13d vacuolar protein sorting 13 homolog D ISO (PMID:29307555) RGD PMID:29307555