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ONTOLOGY REPORT - ANNOTATIONS


Term:reticulophagy
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Accession:GO:0061709 term browser browse the term
Definition:The selective autohagy process in which parts of the endoplasmic reticulum are loaded into autophagosomes, delivered to the vacuole, and degraded in response to changing cellular conditions.
Synonyms:exact_synonym: ER autophagy;   ER-phagy;   autophagy of the ER;   autophagy of the endoplasmic reticulum;   endoplasmic reticulum autophagy
 related_synonym: ER degradation;   endoplasmic reticulum degradation
 alt_id: GO:1990766



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reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:124,522,283...124,592,412
Ensembl chr 6:124,525,523...124,592,015
JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:76,677,403...76,688,050
Ensembl chr 9:76,677,404...76,687,986
JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651
JBrowse link
G Bnip3 BCL2 interacting protein 3 involved_in ISO (PMID:22505714) RGD PMID:22505714 NCBI chr 1:193,708,164...193,725,348
Ensembl chr 1:193,708,167...193,725,359
JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:32160526) RGD PMID:32160526 NCBI chr 3:117,861,916...117,882,680
Ensembl chr 3:117,861,653...117,882,680
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2176173|MGI:3526069 (PMID:31006538)
GO_Central
RGD
PMID:31006538 GO_REF:0000033 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Retreg1 reticulophagy regulator 1 involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
IBA
GO_REF:0000024
(PMID:26040720)
(PMID:34338405)
(PMID:26040720), (PMID:31930741)
GO_REF:0000002
GO_REF:0000033
GO_Central
RGD
InterPro
PMID:26040720 PMID:31930741 PMID:34338405 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 NCBI chr 2:76,335,609...76,474,817
Ensembl chr 2:76,335,609...76,493,898
JBrowse link
G Retreg2 reticulophagy regulator family member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:34338405)
Ensembl
RGD
PMID:34338405 GO_REF:0000107 NCBI chr 9:76,640,282...76,646,400
Ensembl chr 9:76,640,319...76,646,395
JBrowse link
G Retreg3 reticulophagy regulator family member 3 involved_in
acts_upstream_of_or_within
ISO (PMID:33826365)
(PMID:34338405)
RGD PMID:33826365 PMID:34338405 NCBI chr10:86,028,767...86,052,575
Ensembl chr10:86,028,774...86,052,692
JBrowse link
G Snx30 sorting nexin family member 30 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:74,683,902...74,813,013
Ensembl chr 5:74,684,015...74,792,631
JBrowse link
G Snx7 sorting nexin 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:205,843,164...205,927,737
Ensembl chr 2:205,842,837...205,927,763
JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISS
ISO
IBA
GO_REF:0000024
(PMID:29056340)
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:29056340 GO_REF:0000024 GO_REF:0000033 NCBI chr18:27,332,119...27,338,371
Ensembl chr18:27,332,119...27,338,335
JBrowse link
G Tex264 testis expressed 264 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:31006537), (PMID:31006538)
GO_REF:0000033
(PMID:31006538)
RGD
GO_Central
PMID:31006537 PMID:31006538 GO_REF:0000033 NCBI chr 8:107,295,806...107,322,858
Ensembl chr 8:107,295,806...107,323,232
JBrowse link
G Uba5 ubiquitin-like modifier activating enzyme 5 involved_in ISO
ISS
(PMID:32160526)
GO_REF:0000024
RGD
UniProt
PMID:32160526 GO_REF:0000024 NCBI chr 8:104,665,241...104,680,915
Ensembl chr 8:104,665,046...104,680,894
JBrowse link
G Ufc1 ubiquitin-fold modifier conjugating enzyme 1 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:32160526)
UniProt
GO_Central
RGD
PMID:32160526 GO_REF:0000024 GO_REF:0000033 NCBI chr13:83,709,329...83,719,762
Ensembl chr13:83,709,330...83,716,076
JBrowse link
G Ufl1 Ufm1-specific ligase 1 involved_in ISO
IBA
ISS
(PMID:32160526)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:32160526 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:38,962,721...38,995,134
Ensembl chr 5:38,962,171...38,995,199
JBrowse link
G Ufm1 ubiquitin-fold modifier 1 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:32160526)
UniProt
GO_Central
RGD
PMID:32160526 GO_REF:0000024 GO_REF:0000033 NCBI chr 2:137,969,476...137,977,620
Ensembl chr 2:137,966,678...137,978,089
Ensembl chr 2:137,966,678...137,978,089
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,454,030...46,530,407
JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:57,992,396...58,000,220
Ensembl chr 8:57,992,723...57,999,467
JBrowse link
positive regulation of reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 involved_in ISO
IEA
ISS
(PMID:32851973), (PMID:36543799)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:32851973 PMID:36543799 GO_REF:0000024 GO_REF:0000107 NCBI chr10:81,894,393...81,903,581
Ensembl chr10:81,894,393...81,903,590
JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:36543799) RGD PMID:36543799 NCBI chr 3:117,861,916...117,882,680
Ensembl chr 3:117,861,653...117,882,680
JBrowse link
G Ufl1 Ufm1-specific ligase 1 involved_in ISO
ISS
(PMID:36543799)
GO_REF:0000024
RGD
UniProt
PMID:36543799 GO_REF:0000024 NCBI chr 5:38,962,721...38,995,134
Ensembl chr 5:38,962,171...38,995,199
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      process utilizing autophagic mechanism 555
        autophagy 555
          macroautophagy 334
            reticulophagy 22
              positive regulation of reticulophagy 3
              regulation of reticulophagy + 3
Path 2
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      metabolic process 12160
        catabolic process 2919
          autophagy 555
            macroautophagy 334
              reticulophagy 22
                positive regulation of reticulophagy 3
                regulation of reticulophagy + 3
paths to the root