Gene: Fyco1 (FYVE and coiled-coil domain containing 1) Rattus norvegicus
Analyze
Symbol: Fyco1
Name: FYVE and coiled-coil domain containing 1
Description: ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN plus-end-directed vesicle transport along microtubule (ortholog); positive regulation of autophagosome maturation (ortholog); ASSOCIATED WITH cataract (ortholog); cataract 18 (ortholog); FOUND IN autophagosome (ortholog); Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide
AGR Description: Predicted to have metal ion binding activity; predicted to be involved in plus-end-directed vesicle transport along microtubule and positive regulation of autophagosome maturation; predicted to localize to the cytoplasm and intracellular organelle; orthologous to human FYCO1 (FYVE and coiled-coil domain containing 1).
Merged Description: Predicted to have metal ion binding activity; predicted to be involved in plus-end-directed vesicle transport along microtubule and positive regulation of autophagosome maturation; predicted to localize to the cytoplasm and intracellular organelle; orthologous to human FYCO1 (FYVE and coiled-coil domain containing 1); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: FYVE and coiled-coil domain-containing protein 1; LOC301085
Orthologs:
Homo sapiens (human) : FYCO1 (FYVE and coiled-coil domain containing 1)  HGNC  Alliance
Mus musculus (house mouse) : Fyco1 (FYVE and coiled-coil domain containing 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Fyco1 (FYVE and coiled-coil domain containing 1)
Pan paniscus (bonobo/pygmy chimpanzee) : FYCO1 (FYVE and coiled-coil domain containing 1)
Canis lupus familiaris (dog) : FYCO1 (FYVE and coiled-coil domain containing 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Fyco1 (FYVE and coiled-coil domain containing 1)
Sus scrofa (pig) : FYCO1 (FYVE and coiled-coil domain containing 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08132,844,042 - 132,910,905 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08131,995,143 - 132,061,908 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48128,543,895 - 128,612,184 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18128,566,529 - 128,632,267 (-)NCBI
Celera8122,520,323 - 122,587,206 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Fyco1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1309069
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-12
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.