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ONTOLOGY REPORT - ANNOTATIONS

Term:autophagosome maturation
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Accession:GO:0097352 term browser browse the term
Definition:Removal of PI3P and Atg8/LC3 after the closure of the phagophore and before the fusion with the endosome/lysosome (e.g. mammals and insects) or vacuole (yeast), and that very likely destabilizes other Atg proteins and thus enables their efficient dissociation and recycling.
Synonyms:exact_synonym: autophagic vacuole fusion;   autophagic vacuole maturation
 related_synonym: autophagosome fusion
 alt_id: GO:0000046

show annotations for term's descendants           Sort by:
 
autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin acts_upstream_of_or_within ISO MGI:2388888 (MGI:3690270|PMID:16714284) RGD PMID:16714284 MGI:3690270 NCBI chr 1:197,986,384...197,999,726
Ensembl chr 1:197,986,385...197,997,664 		JBrowse link
G Epg5 ectopic P-granules autophagy protein 5 homolog involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:5505596 (MGI:5488852|PMID:23479740)		 RGD PMID:23479740, PMID:21873635 MGI:5488852, RGD:13792537 NCBI chr18:74,299,965...74,397,115
Ensembl chr18:74,299,931...74,395,547 		JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 involved_in ISS
ISO
IBA		 GO_REF:0000024
(MGI:5805578|PMID:27628032)
PMID:21873635		 UniProt
RGD		 PMID:27628032, PMID:21873635 GO_REF:0000024 MGI:5805578, RGD:13792537 NCBI chr  X:124,722,628...124,766,079
Ensembl chr  X:124,722,628...124,766,044 		JBrowse link
G Lix1 limb and CNS expressed 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:59,156,021...59,212,878
Ensembl chr 1:59,156,251...59,214,452 		JBrowse link
G Lix1l limb and CNS expressed 1 like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:198,726,110...198,751,987
Ensembl chr 2:198,726,118...198,751,985 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO
IBA		 (PMID:28223137)
PMID:21873635		 RGD PMID:28223137, PMID:21873635 RGD:13792537 NCBI chr 3:150,801,289...150,802,935
Ensembl chr 3:150,801,289...150,802,935 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO
IBA		 (PMID:28223137)
PMID:21873635		 RGD PMID:28223137, PMID:21873635 RGD:13792537 NCBI chr19:53,635,449...53,643,970
Ensembl chr19:53,629,779...53,646,058 		JBrowse link
G Map1lc3b2 microtubule-associated protein 1 light chain 3 beta 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,864,144...75,874,567
Ensembl chr16:75,873,881...75,874,519 		JBrowse link
G Mcoln1 mucolipin TRP cation channel 1 acts_upstream_of_or_within ISO MGI:3794204 (MGI:4839416|PMID:20600908) RGD PMID:20600908 MGI:4839416 NCBI chr12:2,054,629...2,068,682
Ensembl chr12:2,054,680...2,068,682 		JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within ISO (MGI:6155546|PMID:29514215) RGD PMID:29514215 MGI:6155546 NCBI chr 2:127,706,618...127,784,129
Ensembl chr 2:127,699,761...127,781,003 		JBrowse link
G Rubcnl rubicon like autophagy enhancer involved_in ISO
IBA		 (PMID:28306502), (PMID:30704899)
(MGI:6282647|PMID:30704899)
PMID:21873635		 RGD PMID:28306502 PMID:30704899, PMID:21873635 MGI:6282647, RGD:13792537 NCBI chr15:57,065,512...57,109,197
Ensembl chr15:57,065,428...57,102,599 		JBrowse link
G Snap29 synaptosome associated protein 29 involved_in ISS
ISO		 GO_REF:0000024
(PMID:23217709)		 UniProt
RGD		 PMID:23217709 GO_REF:0000024 NCBI chr11:87,827,633...87,858,107
Ensembl chr11:87,827,651...87,858,107 		JBrowse link
G Snapin SNAP-associated protein acts_upstream_of_or_within ISO MGI:3608768 (MGI:4879078|PMID:20920792), (MGI:5504339|PMID:22797916) RGD PMID:20920792 PMID:22797916 MGI:4879078 MGI:5504339 NCBI chr 2:189,878,159...189,880,743
Ensembl chr 2:189,878,168...189,880,743 		JBrowse link
G Snx14 sorting nexin 14 involved_in ISO (PMID:25848753) RGD PMID:25848753 NCBI chr 8:96,018,943...96,088,405
Ensembl chr 8:96,023,445...96,088,405 		JBrowse link
G Stx17 syntaxin 17 involved_in ISS
ISO		 GO_REF:0000024
(PMID:23217709), (PMID:24554770), (PMID:28306502)		 UniProt
RGD		 PMID:23217709 PMID:24554770 PMID:28306502 GO_REF:0000024 NCBI chr 5:63,866,346...63,926,276
Ensembl chr 5:63,870,432...63,922,730 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(PMID:22342342)		 UniProt
RGD		 PMID:22342342, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr12:12,374,132...12,403,382
Ensembl chr12:12,374,790...12,402,552 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:23459205)		 Ensembl
RGD		 PMID:23459205 GO_REF:0000107 NCBI chr17:6,840,441...6,878,842
Ensembl chr17:6,840,463...6,878,844 		JBrowse link
G Uvrag UV radiation resistance associated involved_in ISO (PMID:28306502) RGD PMID:28306502 NCBI chr 1:163,844,804...164,101,568
Ensembl chr 1:163,844,818...164,101,578 		JBrowse link
G Vamp7 vesicle-associated membrane protein 7 NOT|involved_in ISO (PMID:23217709) RGD PMID:23217709 NCBI chr12:18,996,566...19,033,714
Ensembl chr12:18,996,591...19,030,381 		JBrowse link
G Vamp8 vesicle-associated membrane protein 8 involved_in ISO
ISS		 (PMID:23217709)
GO_REF:0000024		 RGD
UniProt		 PMID:23217709 GO_REF:0000024 NCBI chr 4:100,250,301...100,252,756
Ensembl chr 4:100,250,301...100,252,755 		JBrowse link
G Vcp valosin-containing protein involved_in ISO
IBA
ISS		 (PMID:20104022)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:20104022, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953 		JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog NOT|involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 6:111,271,283...111,296,013
Ensembl chr 6:111,271,240...111,295,994 		JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 3:122,947,887...122,969,543
Ensembl chr 3:122,947,913...122,969,541 		JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in ISO (PMID:24554770), (PMID:25783203) RGD PMID:24554770 PMID:25783203 NCBI chr12:38,459,816...38,482,903
Ensembl chr12:38,459,832...38,484,512 		JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated NOT|involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 1:142,060,955...142,083,955
Ensembl chr 1:142,060,955...142,083,953 		JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B NOT|involved_in ISO (PMID:23217709) RGD PMID:23217709 NCBI chr 6:102,340,261...102,353,612
Ensembl chr 6:102,339,857...102,353,403 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 NOT|involved_in ISO (PMID:20505359) RGD PMID:20505359 NCBI chr12:13,969,704...13,998,134
Ensembl chr12:13,969,586...13,998,172 		JBrowse link
autophagosome membrane docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 involved_in ISO (PMID:25686604) RGD PMID:25686604 NCBI chr15:24,343,418...24,374,776
Ensembl chr15:24,343,314...24,374,753 		JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISO
ISS		 (PMID:28890335)
GO_REF:0000024		 RGD
UniProt		 PMID:28890335 GO_REF:0000024 NCBI chr12:39,553,903...39,603,326
Ensembl chr12:39,553,903...39,603,326 		JBrowse link
G Calm1 calmodulin 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:28890335)		 UniProt
RGD		 PMID:28890335 GO_REF:0000024 NCBI chr 6:124,217,241...124,225,292
Ensembl chr 6:124,217,241...124,225,292 		JBrowse link
G Calm2 calmodulin 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:28890335)		 UniProt
RGD		 PMID:28890335 GO_REF:0000024 NCBI chr 6:11,067,675...11,080,078
Ensembl chr15:65,506,874...65,507,968 		JBrowse link
G Calm3 calmodulin 3 involved_in ISS
ISO		 GO_REF:0000024
(PMID:28890335)		 UniProt
RGD		 PMID:28890335 GO_REF:0000024 NCBI chr 1:78,844,520...78,851,628
Ensembl chr 1:78,843,080...78,851,719 		JBrowse link
G Snap29 synaptosome associated protein 29 involved_in ISO
IEA		 (PMID:25686604)
GO_REF:0000107		 RGD
Ensembl		 PMID:25686604 GO_REF:0000107 NCBI chr11:87,827,633...87,858,107
Ensembl chr11:87,827,651...87,858,107 		JBrowse link
G Stx17 syntaxin 17 involved_in ISO (PMID:25686604) RGD PMID:25686604 NCBI chr 5:63,866,346...63,926,276
Ensembl chr 5:63,870,432...63,922,730 		JBrowse link
G Vamp8 vesicle-associated membrane protein 8 involved_in ISO
IEA		 (PMID:25686604)
GO_REF:0000107		 RGD
Ensembl		 PMID:25686604 GO_REF:0000107 NCBI chr 4:100,250,301...100,252,756
Ensembl chr 4:100,250,301...100,252,755 		JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:28890335)		 UniProt
RGD		 PMID:28890335 GO_REF:0000024 NCBI chr10:73,901,988...74,001,900
Ensembl chr10:73,902,837...74,001,895 		JBrowse link
negative regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A involved_in ISO (PMID:28223137) RGD PMID:28223137 NCBI chr10:5,002,196...5,196,914
Ensembl chr10:5,009,826...5,196,892 		JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO
ISS
IBA		 (PMID:25484098)
GO_REF:0000024
PMID:21873635		 RGD
GO_Central		 PMID:25484098, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:56,605,078...56,609,236
Ensembl chr10:56,605,140...56,609,233 		JBrowse link
G Rubcn rubicon autophagy regulator involved_in IBA
ISO		 PMID:21873635
(PMID:21062745)		 RGD PMID:21062745, PMID:21873635 RGD:13792537 NCBI chr11:71,150,506...71,199,254
Ensembl chr11:71,151,132...71,197,035 		JBrowse link
G Tmem39a transmembrane protein 39a involved_in ISO
IBA
ISS		 (PMID:31806350)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:31806350, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr11:64,723,181...64,752,514
Ensembl chr11:64,723,186...64,752,544 		JBrowse link
G Ubqln4 ubiquilin 4 involved_in ISO (PMID:23459205) RGD PMID:23459205 NCBI chr 2:187,915,701...187,931,035
Ensembl chr 2:187,915,751...187,931,035 		JBrowse link
positive regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07025818.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:51,786,459...51,787,151 JBrowse link
G Adrb2 adrenoceptor beta 2 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:23708524)		 Ensembl
GO_Central
RGD		 PMID:23708524 GO_REF:0000024 GO_REF:0000107 NCBI chr18:57,513,792...57,515,834
Ensembl chr18:57,513,793...57,515,834 		JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 involved_in ISO (PMID:25771791) RGD PMID:25771791 NCBI chr10:83,935,087...83,963,750 JBrowse link
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO MGI:5648633 (MGI:5603233|PMID:24949970) RGD PMID:24949970 MGI:5603233 NCBI chr10:5,002,196...5,196,914
Ensembl chr10:5,009,826...5,196,892 		JBrowse link
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in ISO
IBA		 (PMID:26468287)
PMID:21873635		 RGD PMID:26468287, PMID:21873635 RGD:13792537 NCBI chr 8:132,844,042...132,910,905
Ensembl chr 8:132,844,043...132,911,193 		JBrowse link
G Irgm immunity-related GTPase M involved_in ISO (PMID:16888103)
(MGI:3656111|PMID:16888103)		 RGD PMID:16888103 MGI:3656111 NCBI chr10:34,213,885...34,221,968
Ensembl chr10:34,213,936...34,221,928 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:47,019,326...47,026,465
Ensembl chr10:47,018,974...47,026,465 		JBrowse link
regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:5,002,196...5,196,914
Ensembl chr10:5,009,826...5,196,892 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (MGI:5698740|PMID:26450516) RGD PMID:26450516 MGI:5698740 NCBI chr 1:197,986,384...197,999,726
Ensembl chr 1:197,986,385...197,997,664 		JBrowse link
G Tbc1d25 TBC1 domain family, member 25 involved_in IBA
ISO		 PMID:21873635
(PMID:21383079)		 RGD PMID:21383079, PMID:21873635 RGD:13792537 NCBI chr  X:15,064,733...15,088,579
Ensembl chr  X:15,064,594...15,088,589 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19491
    cellular process 18343
      process utilizing autophagic mechanism 460
        autophagy 460
          macroautophagy 237
            autophagosome maturation 45
              autophagosome membrane docking 9
              negative regulation of autophagosome maturation 5
              positive regulation of autophagosome maturation 7
              regulation of autophagosome maturation + 13
Path 2
Term Annotations click to browse term
  biological_process 19491
    metabolic process 11797
      catabolic process 2547
        cellular catabolic process 2180
          autophagy 460
            macroautophagy 237
              autophagosome maturation 45
                autophagosome membrane docking 9
                negative regulation of autophagosome maturation 5
                positive regulation of autophagosome maturation 7
                regulation of autophagosome maturation + 13
paths to the root