ONTOLOGY REPORT - ANNOTATIONS
Term: autophagosome maturation
Accession: GO:0097352
browse the term
Definition: Removal of PI3P and Atg8/LC3 after the closure of the phagophore and before the fusion with the endosome/lysosome (e.g. mammals and insects) or vacuole (yeast), and that very likely destabilizes other Atg proteins and thus enables their efficient dissociation and recycling.
Synonyms: exact_synonym: autophagic vacuole fusion; autophagic vacuole maturation
related_synonym: autophagosome fusion
alt_id: GO:0000046
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Atg14
autophagy related 14
involved_in
ISO
(PMID:10625637)
RGD
PMID:10625637
NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113
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Becn1
beclin 1
involved_in
ISO
(PMID:10625637)
RGD
PMID:10625637
NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
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Chmp1a
charged multivesicular body protein 1A
involved_in
ISO
(PMID:17984323)
RGD
PMID:17984323
NCBI chr19:51,238,153...51,246,433
Ensembl chr19:51,238,160...51,246,436
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Chmp1b
charged multivesicular body protein 1B
involved_in
ISO
(PMID:17984323)
RGD
PMID:17984323
NCBI chr18:60,740,349...60,742,879
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Chmp2a
charged multivesicular body protein 2A
involved_in
ISO
(PMID:17984323)
RGD
PMID:17984323
NCBI chr 1:73,660,045...73,662,894
Ensembl chr 1:73,660,046...73,662,452
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Chmp2b
charged multivesicular body protein 2B
involved_in
ISO
(PMID:17984323)
RGD
PMID:17984323
NCBI chr11:3,338,007...3,364,357
Ensembl chr11:3,337,494...3,385,181
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Chmp3
charged multivesicular body protein 3
involved_in
ISO
(PMID:17984323)
RGD
PMID:17984323
NCBI chr 4:103,576,453...103,622,566
Ensembl chr 4:103,576,515...103,623,959
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Chmp4b
charged multivesicular body protein 4B
involved_in
ISO
(PMID:17984323)
RGD
PMID:17984323
NCBI chr 3:143,170,822...143,211,376
Ensembl chr 3:143,170,902...143,210,844
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Chmp4c
charged multivesicular body protein 4C
involved_in
ISO IEA
(PMID:17984323) GO_REF:0000107
RGD Ensembl
PMID:17984323
GO_REF:0000107
NCBI chr 2:91,391,729...91,428,652
Ensembl chr 2:91,388,530...91,428,668
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Chmp5
charged multivesicular body protein 5
involved_in
ISO
(PMID:17984323)
RGD
PMID:17984323
NCBI chr 5:56,081,385...56,098,529
Ensembl chr 5:56,081,343...56,098,529
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Chmp6
charged multivesicular body protein 6
involved_in
ISO
(PMID:17984323)
RGD
PMID:17984323
NCBI chr10:105,191,972...105,197,642
Ensembl chr10:105,191,950...105,197,640
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Chmp7
charged multivesicular body protein 7
involved_in
ISO
(PMID:17984323)
RGD
PMID:17984323
NCBI chr15:44,790,983...44,806,216
Ensembl chr15:44,790,996...44,806,216
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Cln3
CLN3 lysosomal/endosomal transmembrane protein, battenin
acts_upstream_of_or_within
ISO
MGI:2388888 (MGI:3690270|PMID:16714284)
RGD
PMID:16714284
MGI:3690270
NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
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Epg5
ectopic P-granules 5 autophagy tethering factor
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 MGI:5505596 (MGI:5488852|PMID:23479740)
RGD
PMID:23479740 PMID:21873635
MGI:5488852 , RGD:13792537
NCBI chr18:71,403,990...71,502,079
Ensembl chr18:71,404,010...71,501,502
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Lamp2
lysosomal-associated membrane protein 2
involved_in
ISS ISO IBA
GO_REF:0000024 (MGI:5805578|PMID:27628032) PMID:21873635
UniProt RGD
PMID:27628032 PMID:21873635
GO_REF:0000024 MGI:5805578 , RGD:13792537
NCBI chr X:117,173,097...117,222,090
Ensembl chr X:117,057,606...117,260,522
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Lix1
limb and CNS expressed 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:58,128,961...58,187,554
Ensembl chr 1:58,128,961...58,185,964
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Lix1l
limb and CNS expressed 1 like
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:184,136,018...184,161,918
Ensembl chr 2:184,136,038...184,161,916
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Map1lc3a
microtubule-associated protein 1 light chain 3 alpha
involved_in
ISO IBA
(PMID:28223137) PMID:21873635
RGD
PMID:28223137 PMID:21873635
RGD:13792537
NCBI chr 3:143,783,024...143,784,670
Ensembl chr 3:143,783,024...143,784,670
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Map1lc3b
microtubule-associated protein 1 light chain 3 beta
involved_in
ISO IBA
(PMID:28223137) PMID:21873635
RGD
PMID:28223137 PMID:21873635
RGD:13792537
NCBI chr19:49,665,795...49,673,655
Ensembl chr19:49,665,791...49,677,690
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Map1lc3b2
microtubule-associated protein 1 light chain 3 beta 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr16:70,993,893...70,994,586
Ensembl chr16:70,994,128...70,994,606
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Mcoln1
mucolipin TRP cation channel 1
acts_upstream_of_or_within
ISO
MGI:3794204 (MGI:4839416|PMID:20600908)
RGD
PMID:20600908
MGI:4839416
NCBI chr12:1,560,341...1,574,252
Ensembl chr12:1,560,359...1,574,252
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Mfsd8
major facilitator superfamily domain containing 8
acts_upstream_of_or_within
ISO
(MGI:6155546|PMID:29514215)
RGD
PMID:29514215
MGI:6155546
NCBI chr 2:123,822,042...123,882,913
Ensembl chr 2:123,816,614...123,857,971
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Pik3c3
phosphatidylinositol 3-kinase, catalytic subunit type 3
involved_in
ISO
(PMID:10625637)
RGD
PMID:10625637
NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048
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Pik3r4
phosphoinositide-3-kinase, regulatory subunit 4
involved_in
ISO
(PMID:10625637)
RGD
PMID:10625637
NCBI chr 8:106,267,908...106,316,585
Ensembl chr 8:106,267,954...106,316,584
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Rubcnl
rubicon like autophagy enhancer
involved_in
ISO IBA
(PMID:28306502), (PMID:30704899) (MGI:6282647|PMID:30704899) PMID:21873635
RGD
PMID:28306502 PMID:30704899 PMID:21873635
MGI:6282647 , RGD:13792537
NCBI chr15:50,332,458...50,377,494
Ensembl chr15:50,332,418...50,400,849
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Snap29
synaptosome associated protein 29
involved_in
ISS ISO
GO_REF:0000024 (PMID:23217709)
UniProt RGD
PMID:23217709
GO_REF:0000024
NCBI chr11:83,578,479...83,608,953
Ensembl chr11:83,578,489...83,608,958
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Snapin
SNAP-associated protein
acts_upstream_of_or_within
ISO
MGI:3608768 (MGI:4879078|PMID:20920792), (MGI:5504339|PMID:22797916)
RGD
PMID:20920792 PMID:22797916
MGI:4879078 MGI:5504339
NCBI chr 2:175,971,575...175,974,164
Ensembl chr 2:175,971,257...175,974,231
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Snx14
sorting nexin 14
involved_in
ISO IBA
(PMID:25848753) PMID:21873635
RGD
PMID:25848753 PMID:21873635
RGD:13792537
NCBI chr 8:89,283,673...89,390,597
Ensembl chr 8:89,298,114...89,390,580
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Stx17
syntaxin 17
involved_in
ISO ISS
(PMID:23217709), (PMID:24554770), (PMID:28306502) GO_REF:0000024
RGD UniProt
PMID:23217709 PMID:24554770 PMID:28306502
GO_REF:0000024
NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:62,446,187...62,504,451
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Tecpr1
tectonin beta-propeller repeat containing 1
involved_in
ISS IBA ISO
GO_REF:0000024 PMID:21873635 (PMID:22342342)
UniProt RGD
PMID:22342342 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr12:10,391,587...10,420,462
Ensembl chr12:10,391,696...10,419,611
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Ubqln1
ubiquilin 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:23459205)
Ensembl RGD
PMID:23459205
GO_REF:0000107
NCBI chr17:6,439,002...6,477,096
Ensembl chr17:6,439,002...6,477,090
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Uvrag
UV radiation resistance associated
involved_in
ISO
(PMID:28306502)
RGD
PMID:28306502
NCBI chr 1:153,185,356...153,442,200
Ensembl chr 1:153,185,395...153,442,136
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Vamp7
vesicle-associated membrane protein 7
NOT|involved_in
ISO
(PMID:23217709)
RGD
PMID:23217709
NCBI chr12:16,728,477...16,764,261
Ensembl chr12:16,728,524...16,764,097
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Vamp8
vesicle-associated membrane protein 8
involved_in
ISO ISS
(PMID:23217709) GO_REF:0000024
RGD UniProt
PMID:23217709
GO_REF:0000024
NCBI chr 4:104,442,383...104,452,884
Ensembl chr 4:104,442,393...104,452,897
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Vcp
valosin-containing protein
involved_in
ISO IBA ISS
(PMID:20104022) PMID:21873635 GO_REF:0000024
RGD UniProt
PMID:20104022 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571
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Vipas39
VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
NOT|involved_in
ISO
(PMID:25783203)
RGD
PMID:25783203
NCBI chr 6:106,888,284...106,913,139
Ensembl chr 6:106,888,284...106,913,117
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Vps16
VPS16 core subunit of CORVET and HOPS complexes
involved_in
ISO
(PMID:25783203)
RGD
PMID:25783203
NCBI chr 3:117,622,534...117,644,041
Ensembl chr 3:117,622,542...117,646,441
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Vps33a
VPS33A core subunit of CORVET and HOPS complexes
involved_in
ISO IEA
(PMID:24554770), (PMID:25783203) GO_REF:0000107
RGD Ensembl
PMID:24554770 PMID:25783203
GO_REF:0000107
NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393
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Vps33b
VPS33B, late endosome and lysosome associated
NOT|involved_in
ISO
(PMID:25783203)
RGD
PMID:25783203
NCBI chr 1:134,223,967...134,247,232
Ensembl chr 1:134,223,949...134,246,970
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Vti1b
vesicle transport through interaction with t-SNAREs 1B
NOT|involved_in
ISO
(PMID:23217709)
RGD
PMID:23217709
NCBI chr 6:97,957,700...97,976,491
Ensembl chr 6:97,961,346...97,976,465
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Wipi2
WD repeat domain, phosphoinositide interacting 2
NOT|involved_in
ISO
(PMID:20505359)
RGD
PMID:20505359
NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794
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Atg14
autophagy related 14
involved_in
ISO
(PMID:25686604)
RGD
PMID:25686604
NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113
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Atp2a2
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2
involved_in
ISO ISS
(PMID:28890335) GO_REF:0000024
RGD UniProt
PMID:28890335
GO_REF:0000024
NCBI chr12:34,072,710...34,122,142
Ensembl chr12:34,072,683...34,122,101
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Calm1
calmodulin 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:28890335)
UniProt RGD
PMID:28890335
GO_REF:0000024
NCBI chr 6:119,487,691...119,495,759
Ensembl chr 6:119,487,621...119,498,227
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Calm2
calmodulin 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:28890335)
UniProt RGD
PMID:28890335
GO_REF:0000024
NCBI chr 6:7,091,624...7,104,284
Ensembl chr 6:7,091,567...7,104,287
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Calm3
calmodulin 3
involved_in
ISS ISO
GO_REF:0000024 (PMID:28890335)
UniProt RGD
PMID:28890335
GO_REF:0000024
NCBI chr 1:77,590,668...77,597,776
Ensembl chr 1:77,589,230...77,592,207
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Snap29
synaptosome associated protein 29
involved_in
ISO
(PMID:25686604)
RGD
PMID:25686604
NCBI chr11:83,578,479...83,608,953
Ensembl chr11:83,578,489...83,608,958
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Stx17
syntaxin 17
involved_in
ISO
(PMID:25686604)
RGD
PMID:25686604
NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:62,446,187...62,504,451
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Vamp8
vesicle-associated membrane protein 8
involved_in
ISO IEA
(PMID:25686604) GO_REF:0000107
RGD Ensembl
PMID:25686604
GO_REF:0000107
NCBI chr 4:104,442,383...104,452,884
Ensembl chr 4:104,442,393...104,452,897
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Vmp1
vacuole membrane protein 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:28890335)
UniProt RGD
PMID:28890335
GO_REF:0000024
NCBI chr10:71,405,058...71,505,045
Ensembl chr10:71,405,452...71,505,007
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Clec16a
C-type lectin domain containing 16A
involved_in
ISO
(PMID:28223137)
RGD
PMID:28223137
NCBI chr10:4,927,804...5,123,749
Ensembl chr10:4,928,030...5,123,578
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Phf23
PHD finger protein 23
involved_in
ISO ISS IBA
(PMID:25484098) GO_REF:0000024 PMID:21873635
RGD GO_Central
PMID:25484098 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr10:54,718,608...54,722,784
Ensembl chr10:54,717,724...54,722,782
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Rubcn
rubicon autophagy regulator
involved_in
IBA ISO
PMID:21873635 (PMID:21062745)
RGD
PMID:21062745 PMID:21873635
RGD:13792537
NCBI chr11:67,907,534...67,964,347
Ensembl chr11:67,907,516...67,964,314
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Tmem39a
transmembrane protein 39a
involved_in
ISO IBA ISS
(PMID:31806350) PMID:21873635 GO_REF:0000024
RGD UniProt
PMID:31806350 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr11:62,160,631...62,189,964
Ensembl chr11:62,160,631...62,189,964
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Ubqln4
ubiquilin 4
involved_in
ISO
(PMID:23459205)
RGD
PMID:23459205
NCBI chr 2:174,012,726...174,028,062
Ensembl chr 2:174,012,777...174,028,059
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AABR07025818.1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
Ensembl chr16:48,598,506...48,599,444
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Adrb2
adrenoceptor beta 2
involved_in
ISO ISS
(PMID:23708524) GO_REF:0000024
RGD GO_Central
PMID:23708524
GO_REF:0000024
NCBI chr18:55,642,459...55,644,501
Ensembl chr18:55,502,903...55,644,512
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Calcoco2
calcium binding and coiled-coil domain 2
involved_in
ISO
(PMID:25771791)
RGD
PMID:25771791
NCBI chr10:81,055,467...81,069,298
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Clec16a
C-type lectin domain containing 16A
acts_upstream_of_or_within
ISO
MGI:5648633 (MGI:5603233|PMID:24949970)
RGD
PMID:24949970
MGI:5603233
NCBI chr10:4,927,804...5,123,749
Ensembl chr10:4,928,030...5,123,578
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Fyco1
FYVE and coiled-coil domain autophagy adaptor 1
involved_in
ISO IBA
(PMID:26468287) PMID:21873635
RGD
PMID:26468287 PMID:21873635
RGD:13792537
NCBI chr 8:123,412,105...123,479,315
Ensembl chr 8:123,412,112...123,479,021
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Irgm
immunity-related GTPase M
involved_in
ISO
(PMID:16888103) (MGI:3656111|PMID:16888103)
RGD
PMID:16888103
MGI:3656111
NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578
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Smcr8
SMCR8-C9orf72 complex subunit
involved_in
ISO
(PMID:28195531)
RGD
PMID:28195531
NCBI chr10:45,457,962...45,465,101
Ensembl chr10:45,457,605...45,468,876
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Tom1
target of myb1 membrane trafficking protein
involved_in
ISO
(PMID:23023224)
RGD
PMID:23023224
NCBI chr19:13,405,482...13,440,384
Ensembl chr19:13,405,501...13,440,384
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Atg12
autophagy related 12
involved_in
ISO
(PMID:22342342)
RGD
PMID:22342342
NCBI chr18:39,452,247...39,462,424
Ensembl chr18:39,452,191...39,462,418
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Atg5
autophagy related 5
involved_in
ISO IEA
(PMID:22342342) GO_REF:0000107
RGD Ensembl
PMID:22342342
GO_REF:0000107
NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
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Clec16a
C-type lectin domain containing 16A
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr10:4,927,804...5,123,749
Ensembl chr10:4,928,030...5,123,578
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Cln3
CLN3 lysosomal/endosomal transmembrane protein, battenin
involved_in
ISO
(MGI:5698740|PMID:26450516)
RGD
PMID:26450516
MGI:5698740
NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
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Tbc1d25
TBC1 domain family, member 25
involved_in
ISO IBA
(PMID:21383079) PMID:21873635
RGD
PMID:21383079 PMID:21873635
RGD:13792537
NCBI chr X:14,314,095...14,339,171
Ensembl chr X:14,314,414...14,338,275
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Tecpr1
tectonin beta-propeller repeat containing 1
involved_in
ISO
(PMID:22342342)
RGD
PMID:22342342
NCBI chr12:10,391,587...10,420,462
Ensembl chr12:10,391,696...10,419,611
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