Gene: Sptlc1 (serine palmitoyltransferase, long chain base subunit 1) Rattus norvegicus
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Symbol: Sptlc1
Name: serine palmitoyltransferase, long chain base subunit 1
Description: ENCODES a protein that exhibits serine C-palmitoyltransferase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); positive regulation of lipophagy (ortholog); regulation of fat cell apoptotic process (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH genetic disease (ortholog); hereditary sensory and autonomic neuropathy type 1 (ortholog); hereditary sensory and autonomic neuropathy type 1A (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); serine C-palmitoyltransferase complex (ortholog); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; bisphenol A
AGR Description: Predicted to have serine C-palmitoyltransferase activity; predicted to be involved in membrane lipid metabolic process and positive regulation of lipophagy; predicted to localize to the SPOTS complex; orthologous to human SPTLC1 (serine palmitoyltransferase long chain base subunit 1).
Merged Description: Predicted to have serine C-palmitoyltransferase activity; predicted to be involved in membrane lipid metabolic process and positive regulation of lipophagy; predicted to localize to the SPOTS complex; orthologous to human SPTLC1 (serine palmitoyltransferase long chain base subunit 1); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LCB 1; Lcb1; LOC361213; long chain base biosynthesis protein 1; RGD1306617; serine palmitoyltransferase 1; serine palmitoyltransferase subunit 1; serine-palmitoyl-CoA transferase 1; similar to Serine palmitoyltransferase 1; SPT 1; Spt1
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01711,856,525 - 11,895,566 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01713,956,140 - 13,995,224 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41717,576,401 - 17,615,246 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11717,599,561 - 17,613,645 (+)NCBI
Celera1711,642,596 - 11,681,492 (+)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Sptlc1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1307140
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-12
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.