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cellular response to tumor necrosis factor - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:cellular response to tumor necrosis factor
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Accession:GO:0071356 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tumor necrosis factor stimulus.
Synonyms:exact_synonym: cellular response to TNF

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cellular response to tumor necrosis factor term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1a ATP binding cassette subfamily B member 1A IEP RGD PMID:20300455 RGD:39456124 NCBI chr 4:26,312,403...26,488,456
Ensembl chr 4:25,158,362...25,442,709 		JBrowse link
G Abcb1b ATP-binding cassette, sub-family B member 1B IEP RGD PMID:19088456 RGD:4890037 NCBI chr 4:26,197,706...26,280,156
Ensembl chr 4:25,242,798...25,325,199 		JBrowse link
G Abcc2 ATP binding cassette subfamily C member 2 IEP RGD PMID:20702406 RGD:11081005 NCBI chr 1:252,613,875...252,672,459
Ensembl chr 1:242,664,657...242,723,238 		JBrowse link
G Acod1 aconitate decarboxylase 1 involved_in ISO (PMID:19014335) RGD PMID:19014335 NCBI chr15:79,871,819...79,881,101
Ensembl chr15:79,871,827...79,880,529 		JBrowse link
G Actr3 actin related protein 3 IDA RGD PMID:22319661 RGD:11530045 NCBI chr13:39,353,413...39,396,509
Ensembl chr13:36,800,093...36,844,124 		JBrowse link
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 involved_in ISO
IEA 		(PMID:18485748)
GO_REF:0000107 		RGD
Ensembl		 PMID:18485748 GO_REF:0000107 NCBI chr 2:60,032,873...60,327,629
Ensembl chr 2:60,032,873...60,327,629 		JBrowse link
G Adamts13 ADAM metallopeptidase with thrombospondin type 1 motif, 13 IEP RGD PMID:18433458 RGD:2315954 NCBI chr 3:10,299,264...10,338,464
Ensembl chr 3:10,300,028...10,346,687 		JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif, 7 involved_in ISO (PMID:18485748) RGD PMID:18485748 NCBI chr 8:90,704,727...90,744,333
Ensembl chr 8:90,704,727...90,744,328 		JBrowse link
G Adgre1 adhesion G protein-coupled receptor E1 IEP RGD PMID:23110133 RGD:151665477 NCBI chr 9:2,329,398...2,484,959
Ensembl chr 9:2,242,474...2,398,000 		JBrowse link
G Akap12 A-kinase anchoring protein 12 IEP RGD PMID:20454828 RGD:14348957 NCBI chr 1:40,730,123...40,819,863
Ensembl chr 1:40,730,123...40,819,886 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 acts_upstream_of_or_within ISO
IEA 		(PMID:24349514)
GO_REF:0000107 		RGD
Ensembl		 PMID:24349514 GO_REF:0000107 NCBI chr 6:137,534,810...137,555,131
Ensembl chr 6:131,713,720...131,733,921 		JBrowse link
G Ankrd1 ankyrin repeat domain 1 involved_in ISO
IEA 		(PMID:7730328)
GO_REF:0000107 		RGD
Ensembl		 PMID:7730328 GO_REF:0000107 NCBI chr 1:233,815,851...233,834,891
Ensembl chr 1:233,815,851...233,834,919 		JBrowse link
G Apob apolipoprotein B IEP RGD PMID:17405916 RGD:2325768 NCBI chr 6:30,844,386...30,883,983
Ensembl chr 6:30,844,368...30,892,497 		JBrowse link
G Arhgef2 Rho/Rac guanine nucleotide exchange factor 2 involved_in ISO (PMID:22711822) RGD PMID:22711822 NCBI chr 2:176,358,909...176,416,178
Ensembl chr 2:174,062,976...174,118,355 		JBrowse link
G Asah1 N-acylsphingosine amidohydrolase 1 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:10974027)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:10974027 GO_REF:0000024 GO_REF:0000107 NCBI chr16:50,966,404...50,997,827
Ensembl chr16:50,966,229...51,008,233 		JBrowse link
G Asl argininosuccinate lyase IEP with interferon-gamma RGD PMID:11072090 RGD:4139899 NCBI chr12:26,659,664...26,677,136
Ensembl chr12:26,659,565...26,679,662 		JBrowse link
G Ass1 argininosuccinate synthase 1 IEP TNFalpha
with interferon-gamma 		RGD PMID:12589771 PMID:11072090 RGD:1599307, RGD:4139899 NCBI chr 3:14,747,355...14,796,909
Ensembl chr 3:14,747,368...14,796,903 		JBrowse link
G Bag4 BAG cochaperone 4 involved_in ISO
IEA 		(PMID:21712384)
GO_REF:0000107 		RGD
Ensembl		 PMID:21712384 GO_REF:0000107 NCBI chr16:66,288,678...66,305,893
Ensembl chr16:66,288,678...66,308,663 		JBrowse link
G Bcl2l1 Bcl2-like 1 IEP RGD PMID:21937453 RGD:11353803 NCBI chr 3:161,713,777...161,764,844
Ensembl chr 3:141,253,523...141,303,479
Ensembl chr 1:141,253,523...141,303,479 		JBrowse link
G Bdnf brain-derived neurotrophic factor IEP RGD PMID:21958434 RGD:8657122 NCBI chr 3:116,619,633...116,670,212
Ensembl chr 3:96,165,042...96,215,615 		JBrowse link
G Birc2 baculoviral IAP repeat-containing 2 acts_upstream_of_or_within ISO
IEA 		MGI:1197007 (PMID:18621737)
GO_REF:0000107 		RGD
Ensembl		 PMID:18621737 GO_REF:0000107 NCBI chr 8:4,968,856...4,989,325
Ensembl chr 8:4,968,842...4,988,732 		JBrowse link
G Birc3 baculoviral IAP repeat-containing 3 acts_upstream_of_or_within ISO MGI:1197009 (PMID:18621737) RGD PMID:18621737 NCBI chr 8:5,000,844...5,028,470
Ensembl chr 8:5,000,845...5,015,802 		JBrowse link
G Brca1 BRCA1, DNA repair associated involved_in ISO (PMID:23415688) RGD PMID:23415688 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Cactin cactin, spliceosome C complex subunit involved_in ISO
IEA 		(PMID:20829348)
GO_REF:0000107 		RGD
Ensembl		 PMID:20829348 GO_REF:0000107 NCBI chr 7:8,391,396...8,397,219
Ensembl chr 7:8,391,397...8,396,829 		JBrowse link
G Calca calcitonin-related polypeptide alpha IEP RGD PMID:21958434 RGD:8657122 NCBI chr 1:178,312,636...178,317,588
Ensembl chr 1:168,878,214...168,883,105 		JBrowse link
G Calcr calcitonin receptor IEP RGD PMID:23110133 RGD:151665477 NCBI chr 4:32,615,955...32,691,075
Ensembl chr 4:31,661,273...31,736,392 		JBrowse link
G Camp cathelicidin antimicrobial peptide IEP TNFalpha RGD PMID:19879657 RGD:2316237 NCBI chr 8:109,841,729...109,843,543
Ensembl chr 8:109,841,729...109,843,543 		JBrowse link
G Ccl2 C-C motif chemokine ligand 2 involved_in IEP
IEA
ISO 		GO_REF:0000107
(PMID:14662900)
(PMID:9407497) 		Ensembl
RGD		 PMID:9407497 PMID:14662900 PMID:14512159 GO_REF:0000107, RGD:8548859 NCBI chr10:67,503,077...67,504,875
Ensembl chr10:67,005,424...67,007,226 		JBrowse link
G Ccl3 C-C motif chemokine ligand 3 involved_in ISO (PMID:9407497) RGD PMID:9407497 NCBI chr10:68,948,889...68,950,439
Ensembl chr10:68,451,388...68,452,938 		JBrowse link
G Ccl5 C-C motif chemokine ligand 5 involved_in IEP
ISO 		(PMID:9407497) RGD PMID:9407497 PMID:20663893 RGD:4889885 NCBI chr10:68,820,330...68,824,906
Ensembl chr10:68,322,829...68,327,377 		JBrowse link
G Ccn1 cellular communication network factor 1 IEP RGD PMID:15117851 RGD:329845570 NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484 		JBrowse link
G Ccr1 C-C motif chemokine receptor 1 IEP RGD PMID:23110133 RGD:151665477 NCBI chr 8:123,556,286...123,561,841 JBrowse link
G Ccr5 C-C motif chemokine receptor 5 IEP RGD PMID:23110133 RGD:151665477 NCBI chr 8:123,752,423...123,757,538
Ensembl chr 8:123,752,325...123,759,260 		JBrowse link
G Cd40 CD40 molecule IEP RGD PMID:10403401 RGD:634252 NCBI chr 3:174,209,113...174,224,592
Ensembl chr 3:153,790,449...153,805,534 		JBrowse link
G Cd40lg CD40 ligand IEP RGD PMID:26095681 RGD:11344966 NCBI chr  X:140,164,341...140,176,057
Ensembl chr  X:135,126,969...135,138,306 		JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha acts_upstream_of_or_within ISO
IEA 		(PMID:1618860)
GO_REF:0000107 		RGD
Ensembl		 PMID:1618860 GO_REF:0000107 NCBI chr 1:96,896,584...96,899,256
Ensembl chr 1:87,759,433...87,762,412 		JBrowse link
G Cfl1 cofilin 1 IDA RGD PMID:24760020 RGD:11570414 NCBI chr 1:212,227,124...212,230,656
Ensembl chr 1:202,786,627...202,817,587 		JBrowse link
G Chi3l1 chitinase 3 like 1 IEP TNF-alpha RGD PMID:16234240 RGD:4892601 NCBI chr13:45,641,802...45,649,787
Ensembl chr13:45,641,802...45,649,787 		JBrowse link
G Chuk component of inhibitor of nuclear factor kappa B kinase complex involved_in ISO
IEA 		(PMID:23091055)
GO_REF:0000107 		RGD
Ensembl		 PMID:23091055 GO_REF:0000107 NCBI chr 1:252,908,748...252,944,273
Ensembl chr 1:242,959,760...242,995,065 		JBrowse link
G Cib1 calcium and integrin binding 1 involved_in ISO
IEA
ISS 		(PMID:19854831)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:19854831 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:143,587,591...143,593,153
Ensembl chr 1:134,178,331...134,213,423 		JBrowse link
G Cldn1 claudin 1 IEP RGD PMID:21748286 RGD:11341809 NCBI chr11:87,926,376...87,941,533
Ensembl chr11:74,421,569...74,436,724 		JBrowse link
G Col1a1 collagen type I alpha 1 chain IEP RGD PMID:17485223 RGD:8552773 NCBI chr10:80,380,458...80,397,461
Ensembl chr10:79,883,622...79,900,624 		JBrowse link
G Col2a1 collagen type II alpha 1 chain IEP RGD PMID:19144181 RGD:8661243 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Crhbp corticotropin releasing hormone binding protein involved_in ISO
IEA
ISS 		(PMID:15345745)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:15345745 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:26,692,403...26,704,710
Ensembl chr 2:26,692,403...26,704,710 		JBrowse link
G Cripto cripto, EGF-CFC family member involved_in ISO (PMID:17720976) RGD PMID:17720976 NCBI chr 8:110,924,774...110,938,545
Ensembl chr 8:110,925,024...110,930,308 		JBrowse link
G Csf1r colony stimulating factor 1 receptor IEP RGD PMID:23110133 RGD:151665477 NCBI chr18:56,834,152...56,860,804
Ensembl chr18:54,546,659...54,590,415 		JBrowse link
G Ctsk cathepsin K IEP RGD PMID:23110133 RGD:151665477 NCBI chr 2:185,747,548...185,758,512
Ensembl chr 2:183,058,569...183,069,550 		JBrowse link
G Cx3cl1 C-X3-C motif chemokine ligand 1 involved_in IDA PMID:12729461 ARUK-UCL PMID:12729461 RGD:13673777 NCBI chr19:10,227,337...10,237,826
Ensembl chr19:10,227,340...10,236,833 		JBrowse link
G Cx3cr1 C-X3-C motif chemokine receptor 1 involved_in IMP PMID:12729461 ARUK-UCL PMID:12729461 RGD:13673777 NCBI chr 8:119,785,726...119,799,431
Ensembl chr 8:119,782,595...119,800,014 		JBrowse link
G Cyba cytochrome b-245 alpha chain IEP RGD PMID:9445395 RGD:2317868 NCBI chr19:50,487,598...50,495,669
Ensembl chr19:50,487,597...50,495,721 		JBrowse link
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 IEP RGD PMID:9397943 RGD:4891988 NCBI chr 8:67,318,665...67,330,196
Ensembl chr 8:58,404,669...58,434,338 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 IEP TNF-alpha RGD PMID:10403529 RGD:7815048 NCBI chr 6:21,093,927...21,103,091
Ensembl chr 6:15,342,344...15,350,917 		JBrowse link
G Dab2ip DAB2 interacting protein involved_in ISO
IEA
ISS 		(PMID:12813029), (PMID:15310755), (PMID:17389591)
GO_REF:0000107
(PMID:18281285), (PMID:19903888)
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:12813029 PMID:15310755 PMID:17389591 PMID:18281285 PMID:19903888 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:18,915,290...19,086,282
Ensembl chr 3:18,915,290...19,086,280 		JBrowse link
G Daxx death-domain associated protein IEP RGD PMID:21572393 RGD:9587767 NCBI chr20:4,971,973...4,978,062
Ensembl chr20:4,970,092...4,975,843 		JBrowse link
G Dbn1 drebrin 1 IDA RGD PMID:22319661 RGD:11530045 NCBI chr17:9,150,608...9,164,982
Ensembl chr17:9,150,659...9,164,984 		JBrowse link
G Dcstamp dendrocyte expressed seven transmembrane protein involved_in IEP
ISO 		(PMID:16061724) RGD PMID:16061724 PMID:23110133 RGD:151665477 NCBI chr 7:72,692,364...72,706,983
Ensembl chr 7:70,807,581...70,822,078 		JBrowse link
G Dicer1 dicer 1 ribonuclease III IEP RGD PMID:23239824 RGD:149735901 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Edn1 endothelin 1 IEP RGD PMID:20512083 RGD:4144864 NCBI chr17:22,660,799...22,666,687
Ensembl chr17:22,454,420...22,460,885 		JBrowse link
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 IEP RGD PMID:23990338 RGD:9685490 NCBI chr 1:239,425,515...239,552,323
Ensembl chr 1:239,425,430...239,552,317 		JBrowse link
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 IEP RGD PMID:23990338 RGD:9685490 NCBI chr 3:8,213,575...8,219,094
Ensembl chr 3:8,213,663...8,226,866 		JBrowse link
G Erbin erbb2 interacting protein involved_in ISO
IEA 		(PMID:16203728)
GO_REF:0000107 		RGD
Ensembl		 PMID:16203728 GO_REF:0000107 NCBI chr 2:34,926,962...35,028,440
Ensembl chr 2:34,928,863...35,027,852 		JBrowse link
G Fabp4 fatty acid binding protein 4 acts_upstream_of_or_within ISO (PMID:1618860) RGD PMID:1618860 NCBI chr 2:93,488,251...93,492,961
Ensembl chr 2:91,580,885...91,585,578 		JBrowse link
G Fas Fas cell surface death receptor IEP RGD PMID:10678925 RGD:8662912 NCBI chr 1:241,212,155...241,245,774
Ensembl chr 1:231,798,960...231,832,591 		JBrowse link
G Fcar Fc alpha receptor involved_in ISO (PMID:25339672) RGD PMID:25339672 NCBI chr 1:69,626,458...69,660,558 JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit IEP RGD PMID:23110133 RGD:151665477 NCBI chr 6:110,852,188...110,855,054
Ensembl chr 6:105,121,170...105,124,036 		JBrowse link
G Foxp1 forkhead box P1 IEP RGD PMID:26842647 RGD:11561903 NCBI chr 4:133,117,346...133,808,647
Ensembl chr 4:131,564,756...132,112,258 		JBrowse link
G Gata3 GATA binding protein 3 involved_in ISO
IEA 		(PMID:19674970)
GO_REF:0000107 		RGD
Ensembl		 PMID:19674970 GO_REF:0000107 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
G Gba1 glucosylceramidase beta 1 involved_in ISO
IEA 		(PMID:19279008)
GO_REF:0000107 		RGD
Ensembl		 PMID:19279008 GO_REF:0000107 NCBI chr 2:176,902,141...176,916,015
Ensembl chr 2:174,609,403...174,618,263 		JBrowse link
G Gbp1 guanylate binding protein 1 involved_in ISO (PMID:17266443) RGD PMID:17266443 NCBI chr 2:231,398,136...231,432,773
Ensembl chr 2:231,398,163...231,432,131
Ensembl chr 2:231,398,163...231,432,131 		JBrowse link
G Gbp2 guanylate binding protein 2 involved_in ISO
IEA 		(PMID:17266443)
GO_REF:0000107 		RGD
Ensembl		 PMID:17266443 GO_REF:0000107 NCBI chr 2:231,332,488...231,348,573
Ensembl chr 2:231,332,284...231,348,571 		JBrowse link
G Gbp3 guanylate binding protein 3 involved_in ISO (PMID:17266443) RGD PMID:17266443 NCBI chr 2:231,460,032...231,500,266
Ensembl chr 2:231,486,062...231,493,098 		JBrowse link
G Gbp4 guanylate binding protein 4 involved_in ISO
IEA 		(PMID:18025219)
GO_REF:0000107 		RGD
Ensembl		 PMID:18025219 GO_REF:0000107 NCBI chr 2:231,304,910...231,318,883
Ensembl chr 2:231,305,244...231,318,879 		JBrowse link
G Gfer growth factor, augmenter of liver regeneration IEP RGD PMID:23073658 RGD:9685733 NCBI chr10:13,718,489...13,721,782
Ensembl chr10:13,718,489...13,720,869 		JBrowse link
G Gpd1 glycerol-3-phosphate dehydrogenase 1 acts_upstream_of_or_within ISO
IEA 		(PMID:3027100)
GO_REF:0000107 		RGD
Ensembl		 PMID:3027100 GO_REF:0000107 NCBI chr 7:130,842,526...130,851,530
Ensembl chr 7:130,844,138...130,851,529 		JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 involved_in ISO
ISS 		(PMID:23285008)
GO_REF:0000024 		RGD
UniProt		 PMID:23285008 GO_REF:0000024 NCBI chr12:20,331,073...20,336,527
Ensembl chr12:15,217,442...15,221,889 		JBrowse link
G Gsdme gasdermin E involved_in ISO
IEA 		(PMID:28459430)
GO_REF:0000107 		RGD
Ensembl		 PMID:28459430 GO_REF:0000107 NCBI chr 4:79,258,799...79,321,129
Ensembl chr 4:79,257,804...79,320,806 		JBrowse link
G Hamp hepcidin antimicrobial peptide IEP RGD PMID:23506423 RGD:11041627 NCBI chr 1:95,298,332...95,300,271
Ensembl chr 1:86,170,901...86,172,891 		JBrowse link
G Has2 hyaluronan synthase 2 involved_in ISO
IEA 		(PMID:20522558)
GO_REF:0000107 		RGD
Ensembl		 PMID:20522558 GO_REF:0000107 NCBI chr 7:88,113,326...88,139,337
Ensembl chr 7:88,113,326...88,128,933 		JBrowse link
G Hdac1 histone deacetylase 1 IEP RGD PMID:20037577 RGD:9590131 NCBI chr 5:147,138,328...147,165,387
Ensembl chr 5:141,853,989...141,881,111 		JBrowse link
G Hdac4 histone deacetylase 4 IEP RGD PMID:22389387 RGD:9681445 NCBI chr 9:92,503,467...92,750,164
Ensembl chr 9:92,507,611...92,750,164 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 IEP RGD PMID:23589286 RGD:9685382 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Hyal1 hyaluronidase 1 involved_in ISO
IEA 		(PMID:18390475)
GO_REF:0000107 		RGD
Ensembl		 PMID:18390475 GO_REF:0000107 NCBI chr 8:108,250,668...108,254,519
Ensembl chr 8:108,250,667...108,260,210 		JBrowse link
G Hyal2 hyaluronidase 2 involved_in ISO
IEA 		(PMID:18390475)
GO_REF:0000107 		RGD
Ensembl		 PMID:18390475 GO_REF:0000107 NCBI chr 8:108,241,895...108,246,853
Ensembl chr 8:108,243,133...108,246,850 		JBrowse link
G Hyal3 hyaluronidase 3 involved_in ISO (PMID:18390475) RGD PMID:18390475 NCBI chr 8:108,254,385...108,260,020
Ensembl chr 8:108,250,667...108,260,647 		JBrowse link
G Icam1 intercellular adhesion molecule 1 IEP RGD PMID:15087287 RGD:1358663 NCBI chr 8:27,829,688...27,841,618
Ensembl chr 8:19,553,645...19,565,438 		JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta involved_in ISS
ISO 		GO_REF:0000024
(PMID:23091055) 		UniProt
RGD		 PMID:23091055 GO_REF:0000024 NCBI chr16:76,021,968...76,075,717
Ensembl chr16:69,319,554...69,373,250 		JBrowse link
G Il18 interleukin 18 IEP RGD PMID:18547159 RGD:4889457 NCBI chr 8:59,802,072...59,829,275
Ensembl chr 8:50,906,960...50,932,887 		JBrowse link
G Il18bp interleukin 18 binding protein IEP RGD PMID:12684057 RGD:4889505 NCBI chr 1:156,372,923...156,374,963
Ensembl chr 1:156,372,883...156,374,963 		JBrowse link
G Il6 interleukin 6 acts_upstream_of_or_within IEP
ISO 		(PMID:19955433) RGD PMID:19955433 PMID:2121800 RGD:7829782 NCBI chr 4:5,889,999...5,894,575
Ensembl chr 4:5,213,394...5,219,178 		JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K involved_in ISO
IEA 		(PMID:21712384)
GO_REF:0000107 		RGD
Ensembl		 PMID:21712384 GO_REF:0000107 NCBI chr10:60,474,262...60,495,813
Ensembl chr10:60,475,897...60,496,773 		JBrowse link
G Irf1 interferon regulatory factor 1 IDA RGD PMID:16978650 RGD:5128784 NCBI chr10:38,417,935...38,424,946
Ensembl chr10:37,916,670...37,924,166 		JBrowse link
G Kat2a lysine acetyltransferase 2A IEP RGD PMID:20130956 RGD:9590236 NCBI chr10:86,132,535...86,140,877
Ensembl chr10:85,632,216...85,640,166 		JBrowse link
G Kcnj11 potassium inwardly-rectifying channel, subfamily J, member 11 IEP RGD PMID:19460779 RGD:7296986 NCBI chr 1:105,727,473...105,731,167
Ensembl chr 1:96,591,049...96,594,082 		JBrowse link
G Klf2 KLF transcription factor 2 IEP RGD PMID:18406357 RGD:2316543 NCBI chr16:17,521,107...17,523,739
Ensembl chr16:17,514,552...17,523,944 		JBrowse link
G Lcn2 lipocalin 2 IEP TNFalpha RGD PMID:19329498 PMID:22249220 RGD:2316495, RGD:126781756 NCBI chr 3:15,680,688...15,684,033
Ensembl chr 3:15,680,687...15,684,095 		JBrowse link
G Map3k5 mitogen-activated protein kinase kinase kinase 5 IEP RGD PMID:20716917 RGD:10412640 NCBI chr 1:16,505,387...16,723,899
Ensembl chr 1:14,685,492...14,904,800 		JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 IDA RGD PMID:20659889 RGD:155804281 NCBI chr 5:51,149,524...51,212,012
Ensembl chr 5:46,357,931...46,415,597 		JBrowse link
G Mapk1 mitogen activated protein kinase 1 acts_upstream_of_or_within ISO
IEA 		MGI:1346859 (PMID:24349514)
GO_REF:0000107 		RGD
Ensembl		 PMID:24349514 GO_REF:0000107 NCBI chr11:97,462,025...97,529,193
Ensembl chr11:83,957,813...84,023,616 		JBrowse link
G Mapk14 mitogen activated protein kinase 14 acts_upstream_of_or_within ISO
IEA 		(PMID:24349514)
GO_REF:0000107 		RGD
Ensembl		 PMID:24349514 GO_REF:0000107 NCBI chr20:6,751,288...6,812,294
Ensembl chr20:6,749,670...6,810,589 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO MGI:1346858 (PMID:24349514) RGD PMID:24349514 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:181,366,637...181,372,863 		JBrowse link
G Mapk9 mitogen-activated protein kinase 9 IEP TNFalpha RGD PMID:9475517 RGD:2304245 NCBI chr10:34,670,750...34,711,972
Ensembl chr10:34,169,675...34,210,178 		JBrowse link
G Mir101-2 microRNA 101-2 acts_upstream_of_or_within ISO (PMID:24349514) RGD PMID:24349514 NCBI chr 1:226,860,371...226,860,467
Ensembl chr 1:226,860,371...226,860,467 		JBrowse link
G Mir103a1 microRNA 103a-1 acts_upstream_of_or_within ISO (PMID:19188425) RGD PMID:19188425 NCBI chr10:20,244,412...20,244,497
Ensembl chr10:20,244,412...20,244,497 		JBrowse link
G Mir103a2 microRNA 103a-2 acts_upstream_of_or_within ISO (PMID:19188425) RGD PMID:19188425 NCBI chr 3:138,963,227...138,963,312
Ensembl chr 3:118,510,194...118,510,279 		JBrowse link
G Mir125b1 microRNA 125b-1 acts_upstream_of_or_within ISO (PMID:19188425) RGD PMID:19188425 NCBI chr 8:50,850,036...50,850,122
Ensembl chr 8:41,952,966...41,953,052 		JBrowse link
G Mir125b2 microRNA 125b-2 acts_upstream_of_or_within ISO (PMID:19188425) RGD PMID:19188425 NCBI chr11:29,732,572...29,732,659 JBrowse link
G Mir143 microRNA 143 acts_upstream_of_or_within ISO (PMID:19188425) RGD PMID:19188425 NCBI chr18:55,101,006...55,101,110
Ensembl chr18:55,101,006...55,101,110 		JBrowse link
G Mir146b microRNA 146b acts_upstream_of_or_within ISO (PMID:19188425) RGD PMID:19188425 NCBI chr 1:245,203,438...245,203,525
Ensembl chr 1:245,203,438...245,203,525 		JBrowse link
G Mir148a microRNA 148a acts_upstream_of_or_within ISO (PMID:19188425) RGD PMID:19188425 NCBI chr 4:80,333,762...80,333,858
Ensembl chr 4:80,333,762...80,333,858 		JBrowse link
G Mir20b microRNA 20b involved_in ISO (PMID:28595801) RGD PMID:28595801 NCBI chr  X:132,422,211...132,422,282
Ensembl chr  X:132,422,211...132,422,282 		JBrowse link
G Mir221 microRNA 221 acts_upstream_of_or_within ISO (PMID:19188425) RGD PMID:19188425 NCBI chr  X:6,023,182...6,023,290
Ensembl chr  X:3,429,465...3,429,573 		JBrowse link
G Mir222 microRNA 222 acts_upstream_of_or_within ISO (PMID:19188425) RGD PMID:19188425 NCBI chr  X:6,022,621...6,022,723
Ensembl chr  X:3,428,904...3,429,006 		JBrowse link
G Mir27a microRNA 27a IEP RGD PMID:29373037 RGD:26923905 NCBI chr19:23,954,831...23,954,917
Ensembl chr19:23,954,831...23,954,917 		JBrowse link
G Mir28 microRNA 28 IEP RGD PMID:29373037 RGD:26923905 NCBI chr11:75,975,523...75,975,608
Ensembl chr11:75,975,523...75,975,608 		JBrowse link
G Mir30c2 microRNA 30c-2 involved_in ISO (PMID:25732226) RGD PMID:25732226 NCBI chr 9:25,757,342...25,757,425
Ensembl chr 9:25,757,342...25,757,425 		JBrowse link
G Mir31 microRNA 31 involved_in ISO (PMID:19949084) RGD PMID:19949084 NCBI chr 5:103,599,038...103,599,143 JBrowse link
G Mir331 microRNA 331 acts_upstream_of_or_within ISO (PMID:24349514) RGD PMID:24349514 NCBI chr 7:28,527,390...28,527,485
Ensembl chr 7:28,527,390...28,527,485 		JBrowse link
G Mir34a microRNA 34a IEP RGD PMID:29373037 RGD:26923905 NCBI chr 5:160,533,002...160,533,103
Ensembl chr 5:160,533,002...160,533,103 		JBrowse link
G Mir494 microRNA 494 acts_upstream_of_or_within ISO (PMID:24349514) RGD PMID:24349514 NCBI chr 6:134,550,115...134,550,197
Ensembl chr 6:128,728,709...128,728,793 		JBrowse link
G Mmp1 matrix metallopeptidase 1 IEP RGD PMID:22410640 RGD:7207278 NCBI chr 8:12,943,453...12,963,966
Ensembl chr 8:4,658,588...4,679,097 		JBrowse link
G Mmp9 matrix metallopeptidase 9 IEP RGD PMID:22410640 RGD:7207278 NCBI chr 3:174,103,474...174,111,434
Ensembl chr 3:153,683,858...153,692,120 		JBrowse link
G Muc19 mucin 19, oligomeric ISO RGD (All species) (All species) NCBI chr 7:124,897,424...125,018,582
Ensembl chr 7:123,017,896...123,139,053 		JBrowse link
G Muc2 mucin 2, oligomeric mucus/gel-forming IEP
ISO 		RGD PMID:18507686 (All species) (All species), RGD:2324885 NCBI chr 1:196,799,494...196,831,740
Ensembl chr 1:196,799,517...196,831,756 		JBrowse link
G Myod1 myogenic differentiation 1 acts_upstream_of_or_within ISO
IEA 		(PMID:24349514)
GO_REF:0000107 		RGD
Ensembl		 PMID:24349514 GO_REF:0000107 NCBI chr 1:106,021,161...106,023,871
Ensembl chr 1:96,884,948...96,887,554 		JBrowse link
G Myog myogenin acts_upstream_of_or_within ISO
IEA 		(PMID:24349514)
GO_REF:0000107 		RGD
Ensembl		 PMID:24349514 GO_REF:0000107 NCBI chr13:48,297,476...48,300,065
Ensembl chr13:45,745,436...45,748,039 		JBrowse link
G Nfatc1 nuclear factor of activated T-cells 1 IEP RGD PMID:23110133 RGD:151665477 NCBI chr18:76,321,386...76,430,997
Ensembl chr18:74,046,904...74,156,028 		JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 involved_in IEP
IEA
ISO 		GO_REF:0000107
(PMID:18202225) 		Ensembl
RGD		 PMID:18202225 PMID:29373037 GO_REF:0000107, RGD:26923905 NCBI chr 3:81,001,529...81,031,165
Ensembl chr 3:60,594,242...60,621,737 		JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 acts_upstream_of_or_within IEP
IEA
ISO
IDA 		GO_REF:0000107
(PMID:24349514) 		Ensembl
RGD		 PMID:24349514 PMID:9718198 PMID:18625500 GO_REF:0000107, RGD:10045657, RGD:10045871 NCBI chr 2:226,689,745...226,805,897
Ensembl chr 2:224,016,214...224,110,404 		JBrowse link
G Nfkbia NFKB inhibitor alpha acts_upstream_of_or_within ISO (PMID:24349514) RGD PMID:24349514 NCBI chr 6:78,593,844...78,597,307
Ensembl chr 6:72,858,712...72,861,941 		JBrowse link
G Nkx3-1 NK3 homeobox 1 involved_in ISO
IEA 		(PMID:18757402)
GO_REF:0000107 		RGD
Ensembl		 PMID:18757402 GO_REF:0000107 NCBI chr15:50,883,661...50,886,253
Ensembl chr15:44,473,851...44,476,441 		JBrowse link
G Nos2 nitric oxide synthase 2 IEP with IL1beta RGD PMID:21965676 RGD:5508742 NCBI chr10:64,313,335...64,349,221
Ensembl chr10:63,815,308...63,851,210 		JBrowse link
G Nos3 nitric oxide synthase 3 IEP RGD PMID:22566503 RGD:7794760 NCBI chr 4:11,686,088...11,706,604
Ensembl chr 4:10,793,834...10,814,166 		JBrowse link
G Npnt nephronectin involved_in ISO
IEA 		(PMID:21689636)
GO_REF:0000107 		RGD
Ensembl		 PMID:21689636 GO_REF:0000107 NCBI chr 2:221,391,151...221,459,527
Ensembl chr 2:221,391,153...221,459,401 		JBrowse link
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:29533925)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:29533925 GO_REF:0000024 GO_REF:0000107 NCBI chr10:84,224,599...84,231,812
Ensembl chr10:83,728,318...83,735,705 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 IEP RGD PMID:21958434 RGD:8657122 NCBI chr17:5,560,558...5,875,899
Ensembl chr17:5,559,043...5,869,136 		JBrowse link
G Ocln occludin IEP RGD PMID:21748286 RGD:11341809 NCBI chr 2:33,391,303...33,442,207
Ensembl chr 2:31,657,220...31,764,150 		JBrowse link
G Ocstamp osteoclast stimulatory transmembrane protein involved_in ISO
IEA 		(PMID:18064667), (PMID:20882308)
GO_REF:0000107 		RGD
Ensembl		 PMID:18064667 PMID:20882308 GO_REF:0000107 NCBI chr 3:174,550,420...174,560,907
Ensembl chr 3:154,132,328...154,136,991 		JBrowse link
G Optn optineurin IEP RGD PMID:28776281 RGD:13432574 NCBI chr17:73,209,572...73,260,251
Ensembl chr17:73,209,575...73,260,251 		JBrowse link
G Pck1 phosphoenolpyruvate carboxykinase 1 IEP RGD PMID:18335579 RGD:10445832 NCBI chr 3:182,348,572...182,354,521
Ensembl chr 3:161,930,256...161,936,191 		JBrowse link
G Pck2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) IEP RGD PMID:19268478 RGD:10427879 NCBI chr15:32,997,853...33,006,691
Ensembl chr15:29,027,894...29,037,283 		JBrowse link
G Pid1 phosphotyrosine interaction domain containing 1 involved_in ISO (PMID:19894142) RGD PMID:19894142 NCBI chr 9:85,284,335...85,503,035
Ensembl chr 9:85,284,335...85,503,044 		JBrowse link
G Postn periostin IEP RGD PMID:20458732 RGD:10041020 NCBI chr 2:138,527,714...138,559,098
Ensembl chr 2:138,527,696...138,559,099 		JBrowse link
G Ppargc1a PPARG coactivator 1 alpha IEP RGD PMID:22343369 RGD:7242186 NCBI chr14:63,073,505...63,729,215
Ensembl chr14:58,861,144...59,512,656 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 IDA RGD PMID:1345341 RGD:10045884 NCBI chr10:60,829,778...60,852,887
Ensembl chr10:60,331,494...60,354,606 		JBrowse link
G Ptgis prostaglandin I2 synthase IEP and macrophage migration inhibitory factor RGD PMID:14629650 RGD:401959403 NCBI chr 3:176,347,589...176,383,251
Ensembl chr 3:155,916,412...155,965,451 		JBrowse link
G Pycard PYD and CARD domain containing involved_in ISO
IEA 		(PMID:12486103)
GO_REF:0000107 		RGD
Ensembl		 PMID:12486103 GO_REF:0000107 NCBI chr 1:192,032,124...192,033,419
Ensembl chr 1:182,601,174...182,602,955 		JBrowse link
G Reg3b regenerating family member 3 beta IEP RGD PMID:10982776 RGD:9831402 NCBI chr 4:112,419,776...112,423,014
Ensembl chr 4:110,861,775...110,865,015 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in IDA
IEA
ISO 		GO_REF:0000107
(PMID:18045535), (PMID:18073330), (PMID:23091055) 		Ensembl
RGD		 PMID:18045535 PMID:18073330 PMID:23091055 PMID:15980038 GO_REF:0000107, RGD:152025214 NCBI chr 1:212,354,336...212,364,815
Ensembl chr 1:202,924,945...202,935,484 		JBrowse link
G Ripk1 receptor interacting serine/threonine kinase 1 involved_in ISO
IEA 		(PMID:17389591)
GO_REF:0000107 		RGD
Ensembl		 PMID:17389591 GO_REF:0000107 NCBI chr17:31,044,983...31,077,167
Ensembl chr17:30,839,650...30,871,824 		JBrowse link
G Rora RAR-related orphan receptor A acts_upstream_of_or_within ISO
IEA 		(PMID:19955433)
GO_REF:0000107 		RGD
Ensembl		 PMID:19955433 GO_REF:0000107 NCBI chr 8:78,182,710...78,915,730
Ensembl chr 8:69,301,733...70,025,931 		JBrowse link
G Rps3 ribosomal protein S3 involved_in ISO (PMID:18045535) RGD PMID:18045535 NCBI chr 1:163,190,476...163,195,885
Ensembl chr 1:153,777,472...153,783,680 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:9391078) 		Ensembl
RGD		 PMID:9391078 GO_REF:0000107 NCBI chr16:75,278,325...75,316,736
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Sgms1 sphingomyelin synthase 1 IEP RGD PMID:12353928 RGD:1302423 NCBI chr 1:229,996,673...230,259,591
Ensembl chr 1:229,998,119...230,259,603 		JBrowse link
G Sirt1 sirtuin 1 involved_in ISO
IEA 		(PMID:15152190)
GO_REF:0000107 		RGD
Ensembl		 PMID:15152190 GO_REF:0000107 NCBI chr20:25,305,953...25,328,000
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Slc11a2 solute carrier family 11 member 2 IEP RGD PMID:16221503 RGD:5688725 NCBI chr 7:133,381,878...133,429,921
Ensembl chr 7:131,503,081...131,540,145 		JBrowse link
G Slc2a4 solute carrier family 2 member 4 acts_upstream_of_or_within ISO
IEA 		(PMID:1618860)
GO_REF:0000107 		RGD
Ensembl		 PMID:1618860 GO_REF:0000107 NCBI chr10:55,164,721...55,170,289
Ensembl chr10:54,666,015...54,671,565 		JBrowse link
G Slk STE20-like kinase IEP RGD PMID:21572393 RGD:9587767 NCBI chr 1:246,473,712...246,529,643
Ensembl chr 1:246,473,712...246,526,530 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856877 (PMID:16025116), (PMID:20352118)
GO_REF:0000107 		RGD
Ensembl		 PMID:16025116 PMID:20352118 GO_REF:0000107 NCBI chr19:51,072,209...51,155,639
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
G Smpd4 sphingomyelin phosphodiesterase 4 involved_in ISO
IEA 		(PMID:16517606)
GO_REF:0000107
(PMID:25180167) 		RGD
Ensembl		 PMID:16517606 PMID:25180167 GO_REF:0000107 NCBI chr11:83,362,534...83,386,257
Ensembl chr11:83,362,534...83,386,250 		JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 IEP RGD PMID:10022522 RGD:10448942 NCBI chr 1:104,992,518...105,012,851
Ensembl chr 1:95,856,036...95,876,392 		JBrowse link
G Tank TRAF family member-associated NFKB activator involved_in ISO
IEA 		(PMID:25861989)
GO_REF:0000107 		RGD
Ensembl		 PMID:25861989 GO_REF:0000107 NCBI chr 3:46,114,230...46,190,270
Ensembl chr 3:46,114,274...46,190,264 		JBrowse link
G Thbs1 thrombospondin 1 IEP RGD PMID:15831915 RGD:2317962 NCBI chr 3:105,056,293...105,071,445
Ensembl chr 3:105,056,292...105,071,440 		JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B IEP RGD PMID:11324713 RGD:13825430 NCBI chr 5:162,356,250...162,387,411
Ensembl chr 5:157,070,642...157,104,206 		JBrowse link
G Tnfrsf21 TNF receptor superfamily member 21 involved_in ISO
IEA 		(PMID:19654028)
GO_REF:0000107 		RGD
Ensembl		 PMID:19654028 GO_REF:0000107 NCBI chr 9:25,376,400...25,451,323
Ensembl chr 9:17,879,156...17,954,085 		JBrowse link
G Tradd TNFRSF1A-associated via death domain involved_in ISO (PMID:25732226) RGD PMID:25732226 NCBI chr19:50,046,057...50,048,158
Ensembl chr19:33,136,138...33,142,638 		JBrowse link
G Trpv1 transient receptor potential cation channel, subfamily V, member 1 IEP RGD PMID:21958434 RGD:8657122 NCBI chr10:58,349,936...58,375,021
Ensembl chr10:57,851,428...57,876,513 		JBrowse link
G Vcam1 vascular cell adhesion molecule 1 IEP RGD PMID:23035855 PMID:15980038 RGD:7207794, RGD:152025214 NCBI chr 2:206,723,050...206,742,783
Ensembl chr 2:204,038,114...204,057,958 		JBrowse link
G Wdr35 WD repeat domain 35 IMP RGD PMID:20193664 RGD:11553917 NCBI chr 6:31,771,315...31,831,450
Ensembl chr 6:31,771,360...31,831,029 		JBrowse link
G Xdh xanthine dehydrogenase IEP RGD PMID:12653206 RGD:1624380 NCBI chr 6:27,282,319...27,344,022
Ensembl chr 6:21,530,113...21,592,268 		JBrowse link
G Ybx3 Y box binding protein 3 involved_in ISO
IEA 		(PMID:22711822)
GO_REF:0000107 		RGD
Ensembl		 PMID:22711822 GO_REF:0000107 NCBI chr 4:166,861,180...166,884,532
Ensembl chr 4:165,129,758...165,153,161 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISO
IEA
ISS 		(PMID:19909337)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:19909337 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:142,661,193...142,670,051
Ensembl chr 5:137,376,564...137,385,351 		JBrowse link
G Zfand6 zinc finger AN1-type containing 6 involved_in ISO
ISS 		(PMID:21810480)
GO_REF:0000024 		RGD
UniProt		 PMID:21810480 GO_REF:0000024 NCBI chr 1:138,581,002...138,652,052
Ensembl chr 1:138,581,002...138,651,939 		JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISO
IEA
ISS 		(PMID:20166898)
GO_REF:0000107
(PMID:9703499)
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:9703499 PMID:20166898 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:92,796,628...92,799,108
Ensembl chr 1:83,669,084...83,671,564 		JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in ISO
ISS 		(PMID:20166898)
GO_REF:0000024 		RGD
UniProt		 PMID:20166898 GO_REF:0000024 NCBI chr 6:104,663,396...104,669,815
Ensembl chr 6:98,930,718...98,935,748 		JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 involved_in ISO
IEA 		(PMID:20166898)
GO_REF:0000107 		RGD
Ensembl		 PMID:20166898 GO_REF:0000107 NCBI chr 6:16,242,622...16,246,662
Ensembl chr 6:10,490,032...10,494,064 		JBrowse link
negative regulation of tumor necrosis factor-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:10604883) 		UniProt
Ensembl
RGD		 PMID:10604883 GO_REF:0000024 GO_REF:0000107 NCBI chr11:91,226,524...91,240,244
Ensembl chr11:77,721,912...77,735,564 		JBrowse link
G Anxa4 annexin A4 involved_in ISO (PMID:20237821) RGD PMID:20237821 NCBI chr 4:120,741,750...120,798,534
Ensembl chr 4:119,184,374...119,241,161 		JBrowse link
G Apoa1 apolipoprotein A1 involved_in ISO
IEA 		(PMID:21571275)
GO_REF:0000107 		RGD
Ensembl		 PMID:21571275 GO_REF:0000107 NCBI chr 8:55,423,945...55,425,729
Ensembl chr 8:46,527,144...46,529,035 		JBrowse link
G Birc7 baculoviral IAP repeat-containing 7 involved_in ISO
IEA 		(PMID:11865055)
GO_REF:0000107 		RGD
Ensembl		 PMID:11865055 GO_REF:0000107 NCBI chr 3:168,047,824...168,052,606
Ensembl chr 3:168,047,824...168,052,606 		JBrowse link
G Ccdc3 coiled-coil domain containing 3 involved_in ISO
IEA 		(PMID:25193116)
GO_REF:0000107 		RGD
Ensembl		 PMID:25193116 GO_REF:0000107 NCBI chr17:73,031,891...73,135,173
Ensembl chr17:73,035,045...73,135,337 		JBrowse link
G Cldn18 claudin 18 acts_upstream_of_or_within ISO
IEA 		MGI:5007067 (PMID:22437732)
GO_REF:0000107 		RGD
Ensembl		 PMID:22437732 GO_REF:0000107 NCBI chr 8:109,125,819...109,145,110
Ensembl chr 8:100,247,633...100,273,351 		JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of ISO (PMID:26435691) RGD PMID:26435691 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G F2rl1 F2R like trypsin receptor 1 involved_in ISO
IEA 		(PMID:19781631)
GO_REF:0000107 		RGD
Ensembl		 PMID:19781631 GO_REF:0000107 NCBI chr 2:28,507,003...28,519,954
Ensembl chr 2:26,772,278...26,785,226 		JBrowse link
G Gas6 growth arrest specific 6 involved_in ISO
IEA
ISS 		(PMID:19657094)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:19657094 GO_REF:0000024 GO_REF:0000107 NCBI chr16:82,747,676...82,778,090
Ensembl chr16:76,045,426...76,075,904 		JBrowse link
G Gps2 G protein pathway suppressor 2 involved_in ISO (PMID:22424771) RGD PMID:22424771 NCBI chr10:55,136,043...55,139,106
Ensembl chr10:54,637,455...54,640,650 		JBrowse link
G Hist2h2be histone cluster 2 H2B family member E involved_in ISO (PMID:11859126) RGD PMID:11859126 NCBI chr 2:183,780,583...183,783,030 JBrowse link
G Mir125b1 microRNA 125b-1 acts_upstream_of ISO (PMID:26435691) RGD PMID:26435691 NCBI chr 8:50,850,036...50,850,122
Ensembl chr 8:41,952,966...41,953,052 		JBrowse link
G Mir125b2 microRNA 125b-2 acts_upstream_of ISO (PMID:26435691) RGD PMID:26435691 NCBI chr11:29,732,572...29,732,659 JBrowse link
G Mir130a microRNA 130a acts_upstream_of ISO (PMID:26435691) RGD PMID:26435691 NCBI chr 3:69,822,542...69,822,629
Ensembl chr 3:69,822,542...69,822,629 		JBrowse link
G Mir152 microRNA 152 acts_upstream_of ISO (PMID:24813629) RGD PMID:24813629 NCBI chr10:81,832,936...81,833,020
Ensembl chr10:81,832,936...81,833,020 		JBrowse link
G Mir27b microRNA 27b acts_upstream_of_or_within ISO UniProtKB:P01375 (PMID:31124343) RGD PMID:31124343 NCBI chr17:1,813,427...1,813,523
Ensembl chr17:1,813,426...1,813,529 		JBrowse link
G Naip6 NLR family, apoptosis inhibitory protein 6 involved_in ISO (PMID:11865055) RGD PMID:11865055 NCBI chr 2:31,507,423...31,559,098
Ensembl chr 2:31,507,424...31,570,542 		JBrowse link
G Nol3 nucleolar protein 3 involved_in ISO (PMID:24440909) RGD PMID:24440909 NCBI chr19:33,154,061...33,158,250
Ensembl chr19:33,154,062...33,158,250 		JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 involved_in IEA
ISO 		GO_REF:0000107
(PMID:18972444) 		Ensembl
RGD		 PMID:18972444 GO_REF:0000107 NCBI chr 7:25,733,471...25,829,440
Ensembl chr 7:23,846,122...23,942,047 		JBrowse link
G Peli3 pellino E3 ubiquitin protein ligase family member 3 acts_upstream_of_or_within ISO
IEA 		(PMID:24113711)
GO_REF:0000107
MGI:5441750 (PMID:23950925) 		RGD
Ensembl		 PMID:23950925 PMID:24113711 GO_REF:0000107 NCBI chr 1:211,659,416...211,672,280
Ensembl chr 1:202,232,228...202,242,857 		JBrowse link
G Pias4 protein inhibitor of activated STAT, 4 acts_upstream_of_or_within ISO
IEA 		(PMID:20054338)
GO_REF:0000107 		RGD
Ensembl		 PMID:20054338 GO_REF:0000107 NCBI chr 7:9,197,032...9,210,557
Ensembl chr 7:8,546,312...8,559,808 		JBrowse link
G Ppp2cb protein phosphatase 2 catalytic subunit beta acts_upstream_of ISO
IEA 		UniProtKB:P01375 (PMID:28159925)
GO_REF:0000107 		RGD
Ensembl		 PMID:28159925 GO_REF:0000107 NCBI chr16:65,261,178...65,282,658
Ensembl chr16:58,558,122...58,579,576 		JBrowse link
G Ptpn2 protein tyrosine phosphatase, non-receptor type 2 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:15696169)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:15696169 GO_REF:0000024 GO_REF:0000107 NCBI chr18:63,498,890...63,564,571
Ensembl chr18:61,229,014...61,294,627 		JBrowse link
G Rffl ring finger and FYVE-like domain containing E3 ubiquitin protein ligase involved_in ISO
ISS 		(PMID:18450452)
GO_REF:0000024 		RGD
UniProt		 PMID:18450452 GO_REF:0000024 NCBI chr10:67,740,711...67,803,669
Ensembl chr10:67,740,712...67,824,434 		JBrowse link
G Tank TRAF family member-associated NFKB activator involved_in ISO (PMID:8710854) RGD PMID:8710854 NCBI chr 3:46,114,230...46,190,270
Ensembl chr 3:46,114,274...46,190,264 		JBrowse link
G Tax1bp1 Tax1 binding protein 1 involved_in ISO (PMID:18239685) RGD PMID:18239685 NCBI chr 4:81,821,991...81,877,906
Ensembl chr 4:81,821,989...81,879,100 		JBrowse link
G Tjp2 tight junction protein 2 acts_upstream_of_or_within ISO (PMID:22437732) RGD PMID:22437732 NCBI chr 1:231,136,218...231,264,750
Ensembl chr 1:221,709,745...221,838,295 		JBrowse link
G Tnfrsf11b TNF receptor superfamily member 11B acts_upstream_of_or_within ISO
IEA 		(PMID:29415886)
GO_REF:0000107 		RGD
Ensembl		 PMID:29415886 GO_REF:0000107 NCBI chr 7:87,456,318...87,484,324
Ensembl chr 7:85,566,520...85,594,538 		JBrowse link
G Traip TRAF-interacting protein involved_in ISO
IEA 		(PMID:19151749)
GO_REF:0000107 		RGD
Ensembl		 PMID:19151749 GO_REF:0000107 NCBI chr 8:108,641,860...108,661,640
Ensembl chr 8:108,641,852...108,661,638 		JBrowse link
G Xiap X-linked inhibitor of apoptosis involved_in ISO
IEA 		(PMID:11865055)
GO_REF:0000107 		RGD
Ensembl		 PMID:11865055 GO_REF:0000107 NCBI chr  X:125,756,107...125,803,979
Ensembl chr  X:120,897,907...120,934,700 		JBrowse link
positive regulation of tumor necrosis factor-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam10 ADAM metallopeptidase domain 10 involved_in ISO (PMID:18355445) RGD PMID:18355445 NCBI chr 8:80,226,862...80,358,728
Ensembl chr 8:71,345,837...71,477,889 		JBrowse link
G Adam17 ADAM metallopeptidase domain 17 involved_in IEA
ISO 		GO_REF:0000107
(PMID:18355445), (PMID:24813629) 		Ensembl
RGD		 PMID:18355445 PMID:24813629 GO_REF:0000107 NCBI chr 6:46,601,583...46,663,690
Ensembl chr 6:40,872,856...40,920,639 		JBrowse link
G Casp1 caspase 1 involved_in ISO (PMID:16920334) RGD PMID:16920334 NCBI chr 8:10,746,338...10,882,295
Ensembl chr 8:2,587,831...2,597,383 		JBrowse link
G Casp4 caspase 4 involved_in ISO (PMID:16920334) RGD PMID:16920334 NCBI chr 8:2,599,017...2,635,097
Ensembl chr 8:2,598,876...2,635,092 		JBrowse link
G Cdk5r1 cyclin-dependent kinase 5 regulatory subunit 1 involved_in ISO (PMID:29020624) RGD PMID:29020624 NCBI chr10:65,484,266...65,485,467
Ensembl chr10:65,483,941...65,488,456 		JBrowse link
G Cpne1 copine 1 involved_in ISO
IBA 		(PMID:14674885)
GO_REF:0000033 		RGD
GO_Central		 PMID:14674885 GO_REF:0000033 NCBI chr 3:144,587,531...144,629,911
Ensembl chr 3:144,588,995...144,598,636 		JBrowse link
G Hspa1a heat shock protein family A (Hsp70) member 1A involved_in ISO UniProtKB:Q9HC29 (PMID:24790089) RGD PMID:24790089 NCBI chr20:3,875,411...3,877,866
Ensembl chr20:3,856,006...3,873,227 		JBrowse link
G Hspa1b heat shock protein family A (Hsp70) member 1B involved_in ISO UniProtKB:Q9HC29 (PMID:24790089) RGD PMID:24790089 NCBI chr20:3,859,756...3,863,800
Ensembl chr20:3,856,006...3,873,240
Ensembl chr20:3,856,006...3,873,240 		JBrowse link
G Laptm5 lysosomal protein transmembrane 5 involved_in ISO (PMID:22733818) RGD PMID:22733818 NCBI chr 5:148,371,880...148,393,927
Ensembl chr 5:143,087,759...143,109,807 		JBrowse link
G Mmp8 matrix metallopeptidase 8 involved_in IEA
ISS
ISO 		GO_REF:0000107
PMID:25049354
(PMID:25049354) 		Ensembl
RGD		 PMID:25049354 PMID:25049354 GO_REF:0000107, RGD:13792525 NCBI chr 8:4,724,009...4,733,864
Ensembl chr 8:4,724,029...4,733,520 		JBrowse link
G Nrdc nardilysin convertase acts_upstream_of ISO (PMID:18355445) RGD PMID:18355445 NCBI chr 5:128,983,395...129,047,578
Ensembl chr 5:123,755,806...123,818,595 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO
ISS
IEA 		(PMID:23453807)
GO_REF:0000024
GO_REF:0000107 		RGD
ParkinsonsUK-UCL
Ensembl		 PMID:23453807 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:51,236,410...52,430,242
Ensembl chr 1:48,690,556...49,882,555 		JBrowse link
G Ripk1 receptor interacting serine/threonine kinase 1 involved_in ISO
IEA 		(PMID:30439713)
GO_REF:0000107 		RGD
Ensembl		 PMID:30439713 GO_REF:0000107 NCBI chr17:31,044,983...31,077,167
Ensembl chr17:30,839,650...30,871,824 		JBrowse link
G Traf2 Tnf receptor-associated factor 2 involved_in ISO
IEA 		(PMID:11374864)
GO_REF:0000107 		RGD
Ensembl		 PMID:11374864 GO_REF:0000107 NCBI chr 3:28,740,098...28,764,752
Ensembl chr 3:8,341,951...8,366,538 		JBrowse link
G Trim32 tripartite motif-containing 32 acts_upstream_of_or_within
involved_in 		ISO
IBA 		(PMID:20054338)
GO_REF:0000033 		RGD
GO_Central		 PMID:20054338 GO_REF:0000033 NCBI chr 5:79,005,139...79,016,615
Ensembl chr 5:78,999,389...79,022,018 		JBrowse link
G Ube2k ubiquitin-conjugating enzyme E2K involved_in ISO
IEA 		(PMID:26707646)
GO_REF:0000107 		RGD
Ensembl		 PMID:26707646 GO_REF:0000107 NCBI chr14:42,658,016...42,718,899
Ensembl chr14:42,658,016...42,718,630 		JBrowse link
regulation of tumor necrosis factor-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyld CYLD lysine 63 deubiquitinase involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:28701375)
(PMID:26997266), (PMID:27458237), (PMID:27591049) 		UniProt
Ensembl
RGD		 PMID:26997266 PMID:27458237 PMID:27591049 PMID:28701375 GO_REF:0000024 GO_REF:0000107 NCBI chr19:34,487,491...34,547,311
Ensembl chr19:18,314,019...18,373,658 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		(PMID:29415886)
GO_REF:0000107 		RGD
Ensembl		 PMID:29415886 GO_REF:0000107 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in ISO
IEA 		(PMID:15701637)
GO_REF:0000107 		RGD
Ensembl		 PMID:15701637 GO_REF:0000107 NCBI chr 2:193,937,261...193,988,247
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Nkiras1 NFKB inhibitor interacting Ras-like 1 acts_upstream_of_or_within ISO MGI:1314884|MGI:1919216 (PMID:25220458) RGD PMID:25220458 NCBI chr15:7,493,531...7,503,758
Ensembl chr15:7,493,531...7,503,854 		JBrowse link
G Nkiras2 NFKB inhibitor interacting Ras-like 2 acts_upstream_of_or_within ISO
IEA 		MGI:1314884|MGI:1916971 (PMID:25220458)
GO_REF:0000107 		RGD
Ensembl		 PMID:25220458 GO_REF:0000107 NCBI chr10:85,554,704...85,562,072
Ensembl chr10:85,557,944...85,562,072 		JBrowse link
G Otulin OTU deubiquitinase with linear linkage specificity involved_in ISO
IEA
IBA 		(PMID:26997266)
GO_REF:0000107
(PMID:27523608), (PMID:29950720)
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:26997266 PMID:27523608 PMID:29950720 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:78,290,437...78,316,633
Ensembl chr 2:78,290,959...78,316,422 		JBrowse link
G Pias3 protein inhibitor of activated STAT, 3 acts_upstream_of_or_within ISO (PMID:17442941) RGD PMID:17442941 NCBI chr 2:186,921,384...186,930,292
Ensembl chr 2:184,232,571...184,241,480 		JBrowse link
G Pycard PYD and CARD domain containing involved_in ISO
IEA 		(PMID:14730312)
GO_REF:0000107 		RGD
Ensembl		 PMID:14730312 GO_REF:0000107 NCBI chr 1:192,032,124...192,033,419
Ensembl chr 1:182,601,174...182,602,955 		JBrowse link
G Sharpin SHANK-associated RH domain interactor involved_in ISO
ISS 		(PMID:21455173)
(PMID:21455173), (PMID:21455180)
GO_REF:0000024 		RGD
UniProt		 PMID:21455173 PMID:21455180 GO_REF:0000024 NCBI chr 7:108,070,681...108,075,012
Ensembl chr 7:108,070,687...108,074,955 		JBrowse link
G Spata2 spermatogenesis associated 2 involved_in ISO
IEA
IBA
ISS 		(PMID:27307491), (PMID:27458237), (PMID:27545878), (PMID:27591049)
GO_REF:0000107
(PMID:28701375)
GO_REF:0000033
GO_REF:0000024 		RGD
Ensembl
GO_Central
UniProt		 PMID:27307491 PMID:27458237 PMID:27545878 PMID:27591049 PMID:28701375 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:156,202,962...156,213,283
Ensembl chr 3:156,202,967...156,211,705 		JBrowse link
G Sphk1 sphingosine kinase 1 involved_in ISO
IEA
ISS
IMP 		(PMID:20577214)
GO_REF:0000107
GO_REF:0000024
PMID:28284343 		RGD
Ensembl
UniProt		 PMID:20577214 PMID:28284343 GO_REF:0000024 GO_REF:0000107, RGD:14397556 NCBI chr10:102,257,413...102,263,086
Ensembl chr10:101,758,711...101,764,240 		JBrowse link
G Syk spleen associated tyrosine kinase involved_in ISO
IEA 		(PMID:19151749)
GO_REF:0000107 		RGD
Ensembl		 PMID:19151749 GO_REF:0000107 NCBI chr17:12,756,493...12,830,927
Ensembl chr17:12,604,619...12,661,410 		JBrowse link
G Tmc8 transmembrane channel-like 8 involved_in ISO
IEA 		(PMID:23429285)
GO_REF:0000107 		RGD
Ensembl		 PMID:23429285 GO_REF:0000107 NCBI chr10:103,000,038...103,010,601
Ensembl chr10:102,998,402...103,010,590 		JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A acts_upstream_of_or_within ISO MGI:1916971|MGI:1919216 (PMID:25220458) RGD PMID:25220458 NCBI chr 4:159,837,119...159,849,817
Ensembl chr 4:158,150,820...158,163,591 		JBrowse link
tumor necrosis factor-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn4 actinin alpha 4 involved_in ISO (PMID:25411248) RGD PMID:25411248 NCBI chr 1:93,310,294...93,379,369
Ensembl chr 1:84,182,788...84,251,847 		JBrowse link
G Adam17 ADAM metallopeptidase domain 17 involved_in ISO (PMID:23389627) RGD PMID:23389627 NCBI chr 6:46,601,583...46,663,690
Ensembl chr 6:40,872,856...40,920,639 		JBrowse link
G Aim2 absent in melanoma 2 involved_in ISO
IEA 		(PMID:16432157)
GO_REF:0000107 		RGD
Ensembl		 PMID:16432157 GO_REF:0000107 NCBI chr13:85,865,206...85,906,996
Ensembl chr13:85,866,284...85,906,975 		JBrowse link
G Arhgef2 Rho/Rac guanine nucleotide exchange factor 2 involved_in ISO (PMID:23389627) RGD PMID:23389627 NCBI chr 2:176,358,909...176,416,178
Ensembl chr 2:174,062,976...174,118,355 		JBrowse link
G Card14 caspase recruitment domain family, member 14 involved_in ISO
IEA 		(PMID:21302310)
GO_REF:0000107 		RGD
Ensembl		 PMID:21302310 GO_REF:0000107 NCBI chr10:104,572,059...104,601,606
Ensembl chr10:104,566,424...104,601,905 		JBrowse link
G Cd70 Cd70 molecule involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:2,006,563...2,009,715
Ensembl chr 9:2,006,563...2,009,715 		JBrowse link
G Chuk component of inhibitor of nuclear factor kappa B kinase complex involved_in ISO
IEA
IBA 		(PMID:12656673)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:12656673 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:252,908,748...252,944,273
Ensembl chr 1:242,959,760...242,995,065 		JBrowse link
G Commd7 COMM domain containing 7 involved_in ISO
IBA 		(PMID:15799966)
GO_REF:0000033 		RGD
GO_Central		 PMID:15799966 GO_REF:0000033 NCBI chr 3:142,099,566...142,114,348
Ensembl chr 3:142,099,251...142,114,317 		JBrowse link
G Dab2ip DAB2 interacting protein involved_in IEA
ISO 		GO_REF:0000107
(PMID:12813029) 		Ensembl
RGD		 PMID:12813029 GO_REF:0000107 NCBI chr 3:18,915,290...19,086,282
Ensembl chr 3:18,915,290...19,086,280 		JBrowse link
G Eda2r ectodysplasin A2 receptor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:62,224,763...62,269,333
Ensembl chr  X:62,228,229...62,269,268 		JBrowse link
G Eif5a eukaryotic translation initiation factor 5A involved_in ISO (PMID:17187778) RGD PMID:17187778 NCBI chr10:55,138,821...55,143,272
Ensembl chr10:54,640,024...54,644,656 		JBrowse link
G Fas Fas cell surface death receptor involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:241,212,155...241,245,774
Ensembl chr 1:231,798,960...231,832,591 		JBrowse link
G Foxo3 forkhead box O3 involved_in ISO
IEA 		(PMID:15084260)
GO_REF:0000107 		RGD
Ensembl		 PMID:15084260 GO_REF:0000107 NCBI chr20:47,251,968...47,348,254
Ensembl chr20:45,672,995...45,764,561 		JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta involved_in ISO
IBA 		(PMID:12656673), (PMID:15084260), (PMID:25816133)
GO_REF:0000033
(PMID:15084260) 		RGD
GO_Central		 PMID:12656673 PMID:15084260 PMID:25816133 GO_REF:0000033 NCBI chr16:76,021,968...76,075,717
Ensembl chr16:69,319,554...69,373,250 		JBrowse link
G Ilk integrin-linked kinase involved_in ISO
IEA 		(PMID:21343177)
GO_REF:0000107 		RGD
Ensembl		 PMID:21343177 GO_REF:0000107 NCBI chr 1:160,088,839...160,095,140
Ensembl chr 1:160,088,897...160,095,140 		JBrowse link
G Jak2 Janus kinase 2 involved_in ISO
IEA 		(PMID:8609418)
GO_REF:0000107 		RGD
Ensembl		 PMID:8609418 GO_REF:0000107 NCBI chr 1:236,408,905...236,468,769
Ensembl chr 1:226,995,334...227,054,189 		JBrowse link
G Krt18 keratin 18 acts_upstream_of_or_within ISO MGI:96705 (PMID:10747083) RGD PMID:10747083 NCBI chr 7:133,157,486...133,161,162
Ensembl chr 7:133,157,475...133,161,166
Ensembl chr10:133,157,475...133,161,166 		JBrowse link
G Krt8 keratin 8 acts_upstream_of_or_within ISO MGI:2178042|MGI:96692 (PMID:10747083) RGD PMID:10747083 NCBI chr 7:133,124,203...133,131,656
Ensembl chr 7:133,124,203...133,131,728 		JBrowse link
G Lims1 LIM zinc finger domain containing 1 involved_in ISO (PMID:21343177) RGD PMID:21343177 NCBI chr20:26,851,364...26,961,607
Ensembl chr20:26,309,895...26,418,500 		JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:6,751,288...6,812,294
Ensembl chr20:6,749,670...6,810,589 		JBrowse link
G Mir34a microRNA 34a involved_in ISO (PMID:26949937) RGD PMID:26949937 NCBI chr 5:160,533,002...160,533,103
Ensembl chr 5:160,533,002...160,533,103 		JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 involved_in ISO (PMID:20237821) RGD PMID:20237821 NCBI chr 2:226,689,745...226,805,897
Ensembl chr 2:224,016,214...224,110,404 		JBrowse link
G Nfkbia NFKB inhibitor alpha involved_in ISO (PMID:25038658) RGD PMID:25038658 NCBI chr 6:78,593,844...78,597,307
Ensembl chr 6:72,858,712...72,861,941 		JBrowse link
G Nr2c2 nuclear receptor subfamily 2, group C, member 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:12296995) 		Ensembl
RGD		 PMID:12296995 GO_REF:0000107 NCBI chr 4:124,610,216...124,666,813
Ensembl chr 4:124,608,960...124,661,902 		JBrowse link
G Nsmaf neutral sphingomyelinase activation associated factor involved_in ISO MGI:2386083 (PMID:14985352) RGD PMID:14985352 NCBI chr 5:19,517,795...19,578,773
Ensembl chr 5:19,518,348...19,577,627 		JBrowse link
G Plvap plasmalemma vesicle associated protein involved_in ISO
IEA 		(PMID:19420356)
GO_REF:0000107 		RGD
Ensembl		 PMID:19420356 GO_REF:0000107 NCBI chr16:18,184,985...18,197,301
Ensembl chr16:18,184,975...18,197,301 		JBrowse link
G Ptk2b protein tyrosine kinase 2 beta involved_in ISO (PMID:8670418) RGD PMID:8670418 NCBI chr15:44,536,275...44,656,754
Ensembl chr15:40,360,723...40,481,282 		JBrowse link
G Pycard PYD and CARD domain containing involved_in ISO
IEA 		(PMID:12656673)
GO_REF:0000107 		RGD
Ensembl		 PMID:12656673 GO_REF:0000107 NCBI chr 1:192,032,124...192,033,419
Ensembl chr 1:182,601,174...182,602,955 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in ISO
IEA 		UniProtKB:P01375 (PMID:21343177), (PMID:23878390), (PMID:25411248), (PMID:28159925)
GO_REF:0000107 		RGD
Ensembl		 PMID:21343177 PMID:23878390 PMID:25411248 PMID:28159925 GO_REF:0000107 NCBI chr 1:212,354,336...212,364,815
Ensembl chr 1:202,924,945...202,935,484 		JBrowse link
G Rraga Ras-related GTP binding A involved_in ISO
IEA 		(PMID:8995684)
GO_REF:0000107 		RGD
Ensembl		 PMID:8995684 GO_REF:0000107 NCBI chr 5:101,113,341...101,114,936
Ensembl chr 5:101,112,859...101,114,510 		JBrowse link
G St18 ST18 C2H2C-type zinc finger transcription factor involved_in ISO
IEA 		(PMID:18676404)
GO_REF:0000107 		RGD
Ensembl		 PMID:18676404 GO_REF:0000107 NCBI chr 5:12,582,493...12,914,221
Ensembl chr 5:12,584,110...12,671,790 		JBrowse link
G Stat1 signal transducer and activator of transcription 1 involved_in ISO (PMID:10848577) RGD PMID:10848577 NCBI chr 9:56,911,522...56,951,926
Ensembl chr 9:49,419,340...49,588,540 		JBrowse link
G Tifa TRAF-interacting protein with forkhead-associated domain involved_in ISO PR:P39429 (PMID:11798190) RGD PMID:11798190 NCBI chr 2:216,257,926...216,267,635
Ensembl chr 2:216,234,774...216,267,841 		JBrowse link
G Tmsb4x thymosin beta 4, X-linked acts_upstream_of_or_within_positive_effect ISO (PMID:21343177) RGD PMID:21343177 NCBI chr  X:27,144,666...27,146,667
Ensembl chr  X:27,128,610...27,146,667
Ensembl chr10:27,128,610...27,146,667 		JBrowse link
G Tnf tumor necrosis factor involved_in
acts_upstream_of_or_within 		IMP
ISO
IEA
IBA 		PMID:12729461
(PMID:10443688), (PMID:10748004), (PMID:12813029), (PMID:15310755), (PMID:28159925), (PMID:31824476)
GO_REF:0000107
(PMID:10411298), (PMID:14985352)
(PMID:3898078)
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:3898078 PMID:10411298 PMID:10443688 PMID:10748004 PMID:12813029 More... GO_REF:0000033 GO_REF:0000107, RGD:13673777 NCBI chr20:3,626,685...3,629,303
Ensembl chr20:3,622,011...3,624,629 		JBrowse link
G Tnfrsf11a TNF receptor superfamily member 11A involved_in IBA
ISO
IEA 		GO_REF:0000033
(PMID:12296995), (PMID:18606301)
GO_REF:0000107
(PMID:19940926) 		GO_Central
RGD
Ensembl		 PMID:12296995 PMID:18606301 PMID:19940926 GO_REF:0000033 GO_REF:0000107 NCBI chr13:21,928,370...21,986,719
Ensembl chr13:21,928,408...21,986,695 		JBrowse link
G Tnfrsf13c TNF receptor superfamily member 13C involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:113,736,046...113,738,523
Ensembl chr 7:113,736,055...113,738,517 		JBrowse link
G Tnfrsf17 TNF receptor superfamily member 17 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:4,301,023...4,306,889
Ensembl chr10:4,301,038...4,306,788 		JBrowse link
G Tnfrsf18 TNF receptor superfamily member 18 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:166,618,461...166,622,353
Ensembl chr 5:166,618,969...166,622,353 		JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A involved_in IMP
ISO
IEA 		(PMID:21410936), (PMID:25816133)
UniProtKB:P01375 (PMID:14985352)
GO_REF:0000107
GO_REF:0000002 		RGD
Ensembl
InterPro		 PMID:14985352 PMID:21410936 PMID:25816133 PMID:20967881 GO_REF:0000002 GO_REF:0000107, RGD:5130945 NCBI chr 4:159,837,119...159,849,817
Ensembl chr 4:158,150,820...158,163,591 		JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:162,356,250...162,387,411
Ensembl chr 5:157,070,642...157,104,206 		JBrowse link
G Tnfrsf4 TNF receptor superfamily member 4 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:166,606,909...166,609,599
Ensembl chr 5:166,606,909...166,609,599 		JBrowse link
G Tnfsf11 TNF superfamily member 11 involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000107
(PMID:15304486), (PMID:18606301)
UniProtKB:O35305 (PMID:19940926)
(PMID:17442941), (PMID:18269914), (PMID:22437732) 		Ensembl
RGD		 PMID:15304486 PMID:17442941 PMID:18269914 PMID:18606301 PMID:19940926 More... GO_REF:0000107 NCBI chr15:60,083,008...60,114,479
Ensembl chr15:53,673,877...53,705,445 		JBrowse link
G Tnfsf13b TNF superfamily member 13b involved_in ISO
IEA 		MGI:2143599 (PMID:18624351)
GO_REF:0000107 		RGD
Ensembl		 PMID:18624351 GO_REF:0000107 NCBI chr16:86,164,377...86,195,072
Ensembl chr16:79,462,402...79,492,693 		JBrowse link
G Tnfsf18 TNF superfamily member 18 involved_in IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000002
(PMID:14521928) 		GO_Central
InterPro
RGD		 PMID:14521928 GO_REF:0000002 GO_REF:0000033 NCBI chr13:76,366,790...76,440,673
Ensembl chr13:73,831,252...73,843,169 		JBrowse link
G Tp53 tumor protein p53 involved_in ISO
IEA 		UniProtKB:P01375 (PMID:22499991)
GO_REF:0000107 		RGD
Ensembl		 PMID:22499991 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Tradd TNFRSF1A-associated via death domain involved_in ISO (PMID:12761501), (PMID:7758105) RGD PMID:7758105 PMID:12761501 NCBI chr19:50,046,057...50,048,158
Ensembl chr19:33,136,138...33,142,638 		JBrowse link
G Traf1 TNF receptor-associated factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:18,222,024...18,242,163
Ensembl chr 3:18,222,054...18,241,807 		JBrowse link
G Traf2 Tnf receptor-associated factor 2 involved_in IMP
ISO
IEA
IBA 		(PMID:11907583), (PMID:12296995)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000033
(PMID:8710854) 		RGD
Ensembl
InterPro
GO_Central		 PMID:8710854 PMID:11907583 PMID:12296995 PMID:10713108 PMID:20967881 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107, RGD:2298798, RGD:5130945 NCBI chr 3:28,740,098...28,764,752
Ensembl chr 3:8,341,951...8,366,538 		JBrowse link
G Traf3 Tnf receptor-associated factor 3 involved_in ISO
IEA 		(PMID:20185819)
GO_REF:0000107
GO_REF:0000002
(PMID:17015635) 		RGD
Ensembl
InterPro		 PMID:17015635 PMID:20185819 GO_REF:0000002 GO_REF:0000107 NCBI chr 6:130,199,696...130,307,168
Ensembl chr 6:130,206,484...130,305,481 		JBrowse link
G Traf3ip2 Traf3 interacting protein 2 involved_in ISO MGI:1344376 (PMID:18624351) RGD PMID:18624351 NCBI chr20:44,565,992...44,609,240
Ensembl chr20:43,011,450...43,054,667 		JBrowse link
G Traf5 TNF receptor-associated factor 5 involved_in IEA
ISO 		GO_REF:0000107
(PMID:12296995) 		Ensembl
RGD		 PMID:12296995 GO_REF:0000107 NCBI chr13:103,569,944...103,618,747
Ensembl chr13:103,572,314...103,618,709 		JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in ISO (PMID:12296995) RGD PMID:12296995 NCBI chr 3:108,418,537...108,443,330
Ensembl chr 3:87,963,514...87,983,507 		JBrowse link
G Txndc17 thioredoxin domain containing 17 involved_in ISO (PMID:14607844) RGD PMID:14607844 NCBI chr10:56,832,749...56,835,721 JBrowse link
G Umod uromodulin acts_upstream_of_or_within ISO
IEA 		(PMID:28990932)
GO_REF:0000107 		RGD
Ensembl		 PMID:28990932 GO_REF:0000107 NCBI chr 1:173,816,341...173,829,681
Ensembl chr 1:173,816,339...173,830,302 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    response to stimulus 11082
      response to chemical 5966
        response to peptide 1273
          response to cytokine 1253
            cellular response to cytokine stimulus 1111
              cellular response to tumor necrosis factor 268
                tumor necrosis factor-mediated signaling pathway + 111
paths to the root