Entpd2 (ectonucleoside triphosphate diphosphohydrolase 2)

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Gene: Entpd2 (ectonucleoside triphosphate diphosphohydrolase 2) Rattus norvegicus

Analyze

Symbol:

Entpd2 (Ensembl: Npdc1)

Name:

ectonucleoside triphosphate diphosphohydrolase 2

RGD ID:

69266

Description:

Enables ADP phosphatase activity; ATP hydrolysis activity; and identical protein binding activity. Involved in cellular response to cytokine stimulus; cellular response to lipopolysaccharide; and response to auditory stimulus. Located in cell body; cell projection membrane; and cell surface. Biomarker of hypertension. Human ortholog(s) of this gene implicated in high grade glioma. Orthologous to human ENTPD2 (ectonucleoside triphosphate diphosphohydrolase 2); PARTICIPATES IN purine metabolic pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,4-dinitrotoluene; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

CD39 antigen-like 1; Cd39l1; ecto-ATP diphosphohydrolase 2; ecto-ATPase 2; ecto-ATPDase 2; NTPDase 2; NTPDase2; nucleoside triphosphate diphosphohydrolase 2; testicular ecto-ATPase

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	8,213,575 - 8,219,094 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	8,213,663 - 8,226,866 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	11,318,790 - 11,324,211 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	19,905,020 - 19,910,441 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	18,094,862 - 18,100,283 (+)	NCBI	Rnor_WKY
Rnor_6.0	3	2,617,795 - 2,623,818 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	2,617,805 - 2,623,445 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	2,599,211 - 2,605,231 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	3,564,380 - 3,569,801 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	3,564,379 - 3,569,800 (+)	NCBI
Celera	3	3,038,775 - 3,044,196 (+)	NCBI		Celera
Cytogenetic Map	3	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant intellectual developmental disorder 8 (ISO)

autosomal dominant nocturnal frontal lobe epilepsy 5 (ISO)

developmental and epileptic encephalopathy 14 (ISO)

epilepsy (ISO)

Experimental Liver Cirrhosis (IEP)

high grade glioma (ISO)

hypertension (IEP)

Immunodeficiency 103 (ISO)

Kleefstra syndrome 1 (ISO)

liver cirrhosis (ISO)

primary biliary cholangitis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetylsalicylic acid (EXP)

aconitine (EXP)

acrylamide (EXP)

Aflatoxin B2 alpha (ISO)

alachlor (EXP)

ammonium chloride (EXP)

antimycin A (ISO)

Aroclor 1254 (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

Benzo[k]fluoranthene (ISO)

beta-naphthoflavone (EXP)

bisphenol A (EXP)

butyric acid (EXP)

calcitriol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

cisplatin (ISO)

cocaine (EXP)

copper atom (EXP)

copper(0) (EXP)

coumestrol (ISO)

Cuprizon (EXP)

cyhalothrin (EXP)

decabromodiphenyl ether (EXP)

diethylstilbestrol (ISO)

diuron (EXP)

ethanol (ISO)

ethyl methanesulfonate (ISO)

etoposide (ISO)

flavonoids (EXP)

folic acid (ISO)

fructose (EXP)

furan (EXP)

L-methionine (ISO)

lipopolysaccharide (ISO)

methyl methanesulfonate (ISO)

N-nitrosodiethylamine (EXP,ISO)

nitrofen (EXP)

phenobarbital (ISO)

pirinixic acid (ISO)

pravastatin (EXP,ISO)

pregnenolone 16alpha-carbonitrile (EXP)

raloxifene (EXP)

rotenone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium fluoride (ISO)

Soman (EXP)

sotorasib (ISO)

sulforaphane (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trametinib (ISO)

trichloroethene (EXP)

trimellitic anhydride (ISO)

triptonide (ISO)

valproic acid (ISO)

vincristine (ISO)

zaragozic acid A (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to interferon-alpha (IEP)

cellular response to interleukin-6 (IMP)

cellular response to lipopolysaccharide (IEP)

cellular response to tumor necrosis factor (IEP)

G protein-coupled receptor signaling pathway (IEA,ISO)

nucleoside diphosphate catabolic process (IBA)

platelet activation (IEA,ISO)

purine ribonucleoside diphosphate catabolic process (IEA,ISO)

response to auditory stimulus (IEP)

Cellular Component

basement membrane (IEA,ISO)

cell body (IDA)

cell projection membrane (IDA)

cell surface (IDA)

membrane (IBA,IEA)

plasma membrane (IBA,IDA,IEA,ISO)

Molecular Function

ADP phosphatase activity (IDA)

ATP binding (IEA)

ATP hydrolysis activity (IDA)

GDP phosphatase activity (IBA)

hydrolase activity (IEA)

identical protein binding (IPI)

nucleoside diphosphate phosphatase activity (IBA,IEA,ISO)

protein binding (ISO)

ribonucleoside triphosphate phosphatase activity (IEA,ISO)

UDP phosphatase activity (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

purine metabolic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Selective NTPDase2 expression modulates in vivo rat glioma growth.	Braganhol E, etal., Cancer Sci. 2009 Aug;100(8):1434-42. doi: 10.1111/j.1349-7006.2009.01219.x. Epub 2009 May 18.
2.	Expression of ecto-nucleoside triphosphate diphosphohydrolase1-3 (NTPDase1-3) by cortical astrocytes after exposure to pro-inflammatory factors in vitro.	Brisevac D, etal., J Mol Neurosci. 2013 Nov;51(3):871-9. doi: 10.1007/s12031-013-0088-3. Epub 2013 Aug 29.
3.	The ecto-nucleoside triphosphate diphosphohydrolase NTPDase2/CD39L1 is expressed in a novel functional compartment within the liver.	Dranoff JA, etal., Hepatology 2002 Nov;36(5):1135-44.
4.	Ectonucleotidase NTPDase2 is selectively down-regulated in biliary cirrhosis.	Dranoff JA, etal., J Investig Med. 2004 Nov;52(7):475-82.
5.	Determination of native oligomeric state and substrate specificity of rat NTPDase1 and NTPDase2 after heterologous expression in Xenopus oocytes.	Failer BU, etal., Eur J Biochem. 2003 Apr;270(8):1802-9.
6.	L-NAME-treatment alters ectonucleotidase activities in kidney membranes of rats.	Furstenau CR, etal., Life Sci. 2010 Aug 28;87(9-10):325-32. doi: 10.1016/j.lfs.2010.07.008. Epub 2010 Jul 23.
7.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
8.	An ecto-ATPase and an ecto-ATP diphosphohydrolase are expressed in rat brain.	Kegel B, etal., Neuropharmacology 1997 Sep;36(9):1189-200.
9.	Ecto-ATPase mRNA is regulated by FSH in Sertoli cells.	Lu Q, etal., J Androl 2001 Mar-Apr;22(2):289-301.
10.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
11.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
12.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
13.	GOA pipeline	RGD automated data pipeline
14.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
16.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
17.	Evidence for alternative splicing of ecto-ATPase associated with termination of purinergic transmission.	Vlajkovic SM, etal., Brain Res Mol Brain Res 1999 Nov 10;73(1-2):85-92.
18.	Noise exposure induces up-regulation of ecto-nucleoside triphosphate diphosphohydrolases 1 and 2 in rat cochlea.	Vlajkovic SM, etal., Neuroscience. 2004;126(3):763-73.
19.	Nucleoside triphosphate diphosphohydrolase-2 (NTPDase2/CD39L1) is the dominant ectonucleotidase expressed by rat astrocytes.	Wink MR, etal., Neuroscience. 2006;138(2):421-32. Epub 2006 Jan 18.
20.	IL-6 downregulates transcription of NTPDase2 via specific promoter elements.	Yu J, etal., Am J Physiol Gastrointest Liver Physiol. 2008 Mar;294(3):G748-56. doi: 10.1152/ajpgi.00208.2007. Epub 2008 Jan 17.

Additional References at PubMed

PMID:10510450	PMID:11929769	PMID:12477932	PMID:12832497	PMID:14730706	PMID:14764443	PMID:15004436	PMID:15362980	PMID:15799977	PMID:17574764	PMID:17910474	PMID:18201730
PMID:18458329	PMID:19524108	PMID:21325440	PMID:22038661	PMID:23010799	PMID:23533145	PMID:23677997	PMID:23830739	PMID:26080748	PMID:35593054

Genomics

Comparative Map Data

Entpd2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	8,213,575 - 8,219,094 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	8,213,663 - 8,226,866 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	11,318,790 - 11,324,211 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	19,905,020 - 19,910,441 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	18,094,862 - 18,100,283 (+)	NCBI	Rnor_WKY
Rnor_6.0	3	2,617,795 - 2,623,818 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	2,617,805 - 2,623,445 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	2,599,211 - 2,605,231 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	3,564,380 - 3,569,801 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	3,564,379 - 3,569,800 (+)	NCBI
Celera	3	3,038,775 - 3,044,196 (+)	NCBI		Celera
Cytogenetic Map	3	p13	NCBI

ENTPD2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	137,048,107 - 137,054,061 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	9	137,048,107 - 137,054,061 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	139,942,559 - 139,948,513 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	139,062,374 - 139,068,326 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	137,218,389 - 137,224,342	NCBI
Celera	9	110,455,967 - 110,461,919 (-)	NCBI		Celera
Cytogenetic Map	9	q34.3	NCBI
HuRef	9	109,402,078 - 109,408,246 (-)	NCBI		HuRef
CHM1_1	9	140,091,345 - 140,097,263 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	149,283,232 - 149,290,015 (-)	NCBI		T2T-CHM13v2.0

Entpd2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	25,285,886 - 25,291,335 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	25,285,886 - 25,291,333 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	25,395,874 - 25,401,323 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	25,395,874 - 25,401,321 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	25,251,394 - 25,256,843 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	25,217,967 - 25,223,327 (+)	NCBI		MGSCv36	mm8
Celera	2	25,123,341 - 25,128,787 (+)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI

Entpd2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	5,068,875 - 5,075,098 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955513	5,070,050 - 5,075,098 (-)	NCBI	ChiLan1.0	ChiLan1.0

ENTPD2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	9	137,077,207 - 137,083,031 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	137,077,207 - 137,083,031 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	9	108,108,780 - 108,114,806 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

ENTPD2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	48,589,408 - 48,594,852 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	48,570,891 - 48,594,452 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	47,803,203 - 47,808,473 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	49,467,623 - 49,472,893 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	49,467,627 - 49,472,890 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	48,243,870 - 48,249,128 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	48,542,603 - 48,547,873 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	48,589,911 - 48,595,183 (+)	NCBI		UU_Cfam_GSD_1.0

Entpd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	202,468,293 - 202,475,008 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936669	901,104 - 906,782 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936669	901,192 - 906,765 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ENTPD2
(Sus scrofa - pig)

No map positions available.

ENTPD2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	1,137,500 - 1,142,798 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	1,137,495 - 1,143,231 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666058	4,159,835 - 4,165,592 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Entpd2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	859,637 - 866,804 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	859,598 - 865,194 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Entpd2
12 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	199
Count of miRNA genes:	123
Interacting mature miRNAs:	139
Transcripts:	ENSRNOT00000017829, ENSRNOT00000018560
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70202	Alc19	Alcohol consumption QTL 19	2.5		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	3	1	27494778	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	1	31158234	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	1	33230976	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	diastolic blood pressure (CMO:0000005)	3	1	33278763	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	pulse pressure (CMO:0000292)	3	1	33278763	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	1	36847613	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	38710544	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	39874793	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6537645	10778823	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6537645	10778823	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	9			4			3	27	19	27
Low		30	50	34	15	34	8	8	35	16	10	11	8
Below cutoff		4	7	7		7			12		4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_172030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF129103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF276940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC086558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EF394323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Y11835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000017829 ⟹ ENSRNOP00000017829

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	8,213,663 - 8,220,040 (+)	Ensembl
Rnor_6.0 Ensembl	3	2,617,805 - 2,623,445 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000018927 ⟹ ENSRNOP00000018927

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	8,220,678 - 8,226,866 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000094013 ⟹ ENSRNOP00000086303

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	8,213,663 - 8,226,862 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102806 ⟹ ENSRNOP00000091377

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	8,214,833 - 8,220,040 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000112091 ⟹ ENSRNOP00000096205

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	8,220,678 - 8,226,866 (+)	Ensembl

RefSeq Acc Id:

NM_172030 ⟹ NP_742027

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	8,213,673 - 8,219,094 (+)	NCBI
Rnor_6.0	3	2,617,895 - 2,623,316 (+)	NCBI
Rnor_5.0	3	2,599,211 - 2,605,231 (+)	NCBI
RGSC_v3.4	3	3,564,380 - 3,569,801 (+)	RGD
Celera	3	3,038,775 - 3,044,196 (+)	RGD

Sequence:

show sequence

CATGGCTGGAAAGTTGGTGTCACTGGTGCCACCCCTGCTGCTGGCTGCCGCGGGCCTCGCCGGC
CTTCTGCTACTTTGCGTCCCTACCCAAGACGTCCGGGAGCCGCCCGCCCTCAAGTACGGCATTG
TCCTGGATGCGGGCTCTTCACACACATCCATGTTTGTCTACAAGTGGCCAGCGGACAAGGAGAA
TGACACAGGCATCGTGGGCCAGCACAGCTCTTGTGATGTTCAAGGTGGTGGCATCTCCAGCTAT
GCAAATGACCCCTCTAAGGCAGGCCAGAGTCTGGTCCGATGCCTTGAGCAGGCCCTTCGGGATG
TACCCAGAGACAGACATGCTAGCACACCACTCTACCTGGGAGCTACAGCAGGCATGCGCCTGCT
CAACCTGACCAGCCCAGAGGCCACAGCCAGGGTGCTTGAGGCAGTGACACAGACGCTCACACAG
TACCCCTTTGACTTCCGTGGTGCTCGCATCCTCTCGGGACAGGATGAAGGGGTGTTTGGCTGGG
TGACTGCCAACTACCTGCTGGAGAACTTCATCAAGTATGGCTGGGTGGGCCGGTGGATACGGCC
AAGGAAGGGAACACTGGGGGCCATGGACCTTGGGGGTGCTTCGACACAGATCACCTTTGAGACA
ACCAGTCCCTCTGAAGATCCAGGCAACGAGGTTCATTTGCGACTCTATGGCCAGCATTACCGCG
TTTACACACATAGCTTCCTCTGCTATGGCCGAGACCAGATTCTCCTGAGGCTTCTGGCCAGTGC
CCTCCAGATCCATCGCTTCCACCCCTGCTGGCCAAAGGGCTACTCTACCCAAGTGCTGCTCCAG
GAAGTCTACCAGTCGCCATGCACGATGGGTCAGCGTCCCCGGGCCTTCAATGGCAGTGCCATCG
TCAGCCTGTCAGGAACCAGCAATGCTACCCTGTGTCGTGACCTCGTCTCTCGGCTCTTCAACAT
CTCCTCCTGCCCCTTTTCCCAATGCTCCTTCAATGGGGTCTTCCAGCCTCCCGTGACTGGAAAC
TTCATAGCCTTTTCTGCTTTCTACTATACTGTGGACTTCCTGACAACAGTGATGGGGCTGCCTG
TGGGAACCCTGAAGCAGCTGGAGGAAGCCACAGAGATCACCTGCAACCAGACATGGACTGAACT
TCAGGCCCGAGTGCCAGGACAAAAGACCCGCCTGGCTGACTACTGTGCTGTAGCCATGTTCATA
CATCAGCTTCTGAGCCGTGGTTACCACTTCGATGAGCGCTCCTTCAGAGAAGTGGTCTTCCAAA
AGAAGGCTGCAGACACGGCTGTCGGCTGGGCGCTGGGCTACATGCTGAATTTCACTAACCTGAT
TCCTGCCGACCTCCCCGGACTACGCAAGGGCACCCACTTCAGCTCCTGGGTCGCTCTCCTGCTG
CTCTTCACAGTCCTGATCTTGGCGGCGCTGGTCCTGCTCCTGCGCCAGGTGCGTTCTGCCAAGT
CTCCAGGCGCCCTCTAGGGGTGAACTGGGAGCCTCTCCCAACTCCCTACTATCCCTCCCTTCCA
GAGGGCATCTCTGACCCTGAAGCAGCCTGGAAACCAACGTTCCCTATCTACATTCACAGAAAGC
CTACGTGGGCAGCCCTGAGTTCTCAATTAATCCTCCTCTCTCTTCCTAGGATGTCAGGTCTCAG
CCTGTGACTCAGGGTGAGGTCCATTCGGAGTGGGACTTTTGTTCTGATCTTCAGGGCCCTGGGA
ACTTTCTGTCTGGGCCTTTAGAAAGGCAGGCACCAGAGCCTACAGGCTGGGAGTCAGTTCCATG
CCTACTTGTAAAAACTTTTGTAATAAAAGATTTCTCCTAGAGCAGCGAAGTGTTCCTAGGGCGG
GGCACCCTTGGTCGCCTGTTCTGCCTTCCAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006233644 ⟹ XP_006233706

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	8,213,576 - 8,219,041 (+)	NCBI
Rnor_6.0	3	2,617,796 - 2,623,818 (+)	NCBI
Rnor_5.0	3	2,599,211 - 2,605,231 (+)	NCBI

Sequence:

show sequence

ACTCCGGCCCCGCCCCCGCGTCTAACTCTGGGGCCCCGGCCACCCGGGCCTCCCCGCTGCCTGC
TGTCCGGGGTCCCGCTGTGTTCTCCCACGCGTTCTCATGGCTGGAAAGTTGGTGTCACTGGTGC
CACCCCTGCTGCTGGCTGCCGCGGGCCTCGCCGGCCTTCTGCTACTTTGCGTCCCTACCCAAGA
CGTCCGGGAGCCGCCCGCCCTCAAGTACGGCATTGTCCTGGATGCGGGCTCTTCACACACATCC
ATGTTTGTCTACAAGTGGCCAGCGGACAAGGAGAATGACACAGGCATCGTGGGCCAGCACAGCT
CTTGTGATGTTCAAGGTGGTGGCATCTCCAGCTATGCAAATGACCCCTCTAAGGCAGGCCAGAG
TCTGGTCCGATGCCTTGAGCAGGCCCTTCGGGATGTACCCAGAGACAGACATGCTAGCACACCA
CTCTACCTGGGAGCTACAGCAGGCATGCGCCTGCTCAACCTGACCAGCCCAGAGGCCACAGCCA
GGGTGCTTGAGGCAGTGACACAGACGCTCACACAGTACCCCTTTGACTTCCGTGGTGCTCGCAT
CCTCTCGGGACAGGATGAAGGGGTGTTTGGCTGGGTGACTGCCAACTACCTGCTGGAGAACTTC
ATCAAGTATGGCTGGGTGGGCCGGTGGATACGGCCAAGGAAGGGAACACTGGGGGCCATGGACC
TTGGGGGTGCTTCGACACAGATCACCTTTGAGACAACCAGTCCCTCTGAAGATCCAGGCAACGA
GGTTCATTTGCGACTCTATGGCCAGCATTACCGCGTTTACACACATAGCTTCCTCTGCTATGGC
CGAGACCAGATTCTCCTGAGGCTTCTGGCCAGTGCCCTCCAGATCCATCGCTTCCACCCCTGCT
GGCCAAAGGGCTACTCTACCCAAGTGCTGCTCCAGGAAGTCTACCAGTCGCCATGCACGATGGG
TCAGCGTCCCCGGGCCTTCAATGGCAGTGCCATCGTCAGCCTGTCAGGAACCAGCAATGCTACC
CTGTGTCGTGACCTCGTCTCTCGGCTCTTCAACATCTCCTCCTGCCCCTTTTCCCAATGCTCCT
TCAATGGGGTCTTCCAGCCTCCCGTGGCTGGAAACTTCATAGCCTTTTCTGCTTTCTACTATAC
TGTGGACTTCCTGACAACAGTGATGGGGCTGCCTGTGGGAACCCTGAAGCAGCTGGAGGAAGCC
ACAGAGATCACCTGCAACCAGACATGGACTGAACTTCAGGCCCGAGTGCCAGGACAAAAGACCC
GCCTGGCTGACTACTGTGCTGTAGCCATGTTCATACATCAGCTTCTGAGCCGTGGTTACCACTT
CGATGAGCGCTCCTTCAGAGAAGTGGTCTTCCAAAAGAAGGCTGCAGACACGGCTGTCGGCTGG
GCGCTGGGCTACATGCTGAATTTGACTAACCTGATTCCTGCCGACCTCCCCGGACTACGCAAGG
GCACCCACTTCAGCTCCTGGGTCGCTCTCCTGCTGCTCTTCACAGTCCTGATCTTGGCGGCGCT
GGTCCTGCTCCTGCGCCAGGATGTCAGGTCTCAGCCTGTGACTCAGGGTGAGGTCCATTCGGAG
TGGGACTTTTGTTCTGATCTTCAGGGCCCTGGGAACTTTCTGTCTGGGCCTTTAGAAAGGCAGG
CACCAGAGCCTACAGGCTGGGAGTCAGTTCCATGCCTACTTGTAAAAACTTTTGTAATAAAAGA
TTTTTCCTAGAGCAGCGAAGTGTTCCTAGGGCGGGGCACCCTTGGTCGCCTGTTCTGCCTTCCA
GCTGTGTTGTTGGTTATTTGGGTGAAACCTGGTTCCAAGATACTGACTTTTCTTGCTTCCTCCC
TTTTTGTACCAGGCCTGAGGCAATGGAGGCACTCCTACCTACTCTGCTCTGGGGTTGTCCCTGA
GTCTGAGTTTTCTCTGACAGACAGAACCCTAACAAACCGCAGGTCCCCCTCGAATGACATCCAC
AGGAATTGAGGCTGCACTCCCAAGCTGTTTTTTCCAACTGATACTTGAGATATTAGTAGGCCTG
AAGGTCAGAGGCACCTGCATCCGCAGCCTAAGTCTCTGTGTTCTCTAGGTGGGAAAGTGTGACC
CGAGTATGGGACTCTCTTGCCTCTTTCATGGGAAATTAGCTCAGACTCTATTTCTGTGCAGTCA
ATGCCTTAAGGGCTGGGTTGGGATGGTAGCTCGAGTGCATGCGTGCGCGACACACACACACACA
CACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA

hide sequence

RefSeq Acc Id:

XM_017592023 ⟹ XP_017447512

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	8,213,575 - 8,219,041 (+)	NCBI
Rnor_6.0	3	2,617,795 - 2,623,818 (+)	NCBI

Sequence:

show sequence

TACTCCGGCCCCGCCCCCGCGTCTAACTCTGGGGCCCCGGCCACCCGGGCCTCCCCGCTGCCTG
CTGTCCGGGGTCCCGCTGTGTTCTCCCACGCGTTCTCATGGCTGGAAAGTTGGTGTCACTGGTG
CCACCCCTGCTGCTGGCTGCCGCGGGCCTCGCCGGCCTTCTGCTACTTTGCGTCCCTACCCAAG
ACGTCCGGGAGCCGCCCGCCCTCAAGTACGGCATTGTCCTGGATGCGGGCTCTTCACACACATC
CATGTTTGTCTACAAGTGGCCAGCGGACAAGGAGAATGACACAGGCATCGTGGGCCAGCACAGC
TCTTGTGATGTTCAAGGTGGTGGCATCTCCAGCTATGCAAATGACCCCTCTAAGGCAGGCCAGA
GTCTGGTCCGATGCCTTGAGCAGGCCCTTCGGGATGTACCCAGAGACAGACATGCTAGCACACC
ACTCTACCTGGGAGCTACAGCAGGCATGCGCCTGCTCAACCTGACCAGCCCAGAGGCCACAGCC
AGGGTGCTTGAGGCAGTGACACAGACGCTCACACAGTACCCCTTTGACTTCCGTGGTGCTCGCA
TCCTCTCGGGACAGGATGAAGGGGTGTTTGGCTGGGTGACTGCCAACTACCTGCTGGAGAACTT
CATCAAGTATGGCTGGGTGGGCCGGTGGATACGGCCAAGGAAGGGAACACTGGGGGCCATGGAC
CTTGGGGGTGCTTCGACACAGATCACCTTTGAGACAACCAGTCCCTCTGAAGATCCAGGCAACG
AGGTTCATTTGCGACTCTATGGCCAGCATTACCGCGTTTACACACATAGCTTCCTCTGCTATGG
CCGAGACCAGATTCTCCTGAGGCTTCTGGCCAGTGCCCTCCAGATCCATCGCTTCCACCCCTGC
TGGCCAAAGGGCTACTCTACCCAAGTGCTGCTCCAGGAAGTCTACCAGTCGCCATGCACGATGG
GTCAGCGTCCCCGGGCCTTCAATGGCAGTGCCATCGTCAGCCTGTCAGGAACCAGCAATGCTAC
CCTGTGTCGTGACCTCGTCTCTCGGCTCTTCAACATCTCCTCCTGCCCCTTTTCCCAATGCTCC
TTCAATGGGGTCTTCCAGCCTCCCGTGGCTGGAAACTTCATAGCCTTTTCTGCTTTCTACTATA
CTGTGGACTTCCTGACAACAGTGATGGGGCTGCCTGTGGGAACCCTGAAGCAGCTGGAGGAAGC
CACAGAGATCACCTGCAACCAGACATGGACTGAATGGCCATCTTTGCTGTCCTCTCCATCCAGC
TGTTGGAAGGGGAGAACACAAGGTTCCAGCAGTCACGAGCTTCAGGCCCGAGTGCCAGGACAAA
AGACCCGCCTGGCTGACTACTGTGCTGTAGCCATGTTCATACATCAGCTTCTGAGCCGTGGTTA
CCACTTCGATGAGCGCTCCTTCAGAGAAGTGGTCTTCCAAAAGAAGGCTGCAGACACGGCTGTC
GGCTGGGCGCTGGGCTACATGCTGAATTTGACTAACCTGATTCCTGCCGACCTCCCCGGACTAC
GCAAGGGCACCCACTTCAGCTCCTGGGTCGCTCTCCTGCTGCTCTTCACAGTCCTGATCTTGGC
GGCGCTGGTCCTGCTCCTGCGCCAGGATGTCAGGTCTCAGCCTGTGACTCAGGGTGAGGTCCAT
TCGGAGTGGGACTTTTGTTCTGATCTTCAGGGCCCTGGGAACTTTCTGTCTGGGCCTTTAGAAA
GGCAGGCACCAGAGCCTACAGGCTGGGAGTCAGTTCCATGCCTACTTGTAAAAACTTTTGTAAT
AAAAGATTTTTCCTAGAGCAGCGAAGTGTTCCTAGGGCGGGGCACCCTTGGTCGCCTGTTCTGC
CTTCCAGCTGTGTTGTTGGTTATTTGGGTGAAACCTGGTTCCAAGATACTGACTTTTCTTGCTT
CCTCCCTTTTTGTACCAGGCCTGAGGCAATGGAGGCACTCCTACCTACTCTGCTCTGGGGTTGT
CCCTGAGTCTGAGTTTTCTCTGACAGACAGAACCCTAACAAACCGCAGGTCCCCCTCGAATGAC
ATCCACAGGAATTGAGGCTGCACTCCCAAGCTGTTTTTTCCAACTGATACTTGAGATATTAGTA
GGCCTGAAGGTCAGAGGCACCTGCATCCGCAGCCTAAGTCTCTGTGTTCTCTAGGTGGGAAAGT
GTGACCCGAGTATGGGACTCTCTTGCCTCTTTCATGGGAAATTAGCTCAGACTCTATTTCTGTG
CAGTCAATGCCTTAAGGGCTGGGTTGGGATGGTAGCTCGAGTGCATGCGTGCGCGACACACACA
CACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA

hide sequence

RefSeq Acc Id:

XM_017592024 ⟹ XP_017447513

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	8,213,576 - 8,219,041 (+)	NCBI
Rnor_6.0	3	2,617,796 - 2,623,818 (+)	NCBI

Sequence:

show sequence

ACTCCGGCCCCGCCCCCGCGTCTAACTCTGGGGCCCCGGCCACCCGGGCCTCCCCGCTGCCTGC
TGTCCGGGGTCCCGCTGTGTTCTCCCACGCGTTCTCATGGCTGGAAAGTTGGTGTCACTGGTGC
CACCCCTGCTGCTGGCTGCCGCGGGCCTCGCCGGCCTTCTGCTACTTTGCGTCCCTACCCAAGA
CGTCCGGGAGCCGCCCGCCCTCAAGTACGGCATTGTCCTGGATGCGGGCTCTTCACACACATCC
ATGTTTGTCTACAAGTGGCCAGCGGACAAGGAGAATGACACAGGCATCGTGGGCCAGCACAGCT
CTTGTGATGTTCAAGGTGGTGGCATCTCCAGCTATGCAAATGACCCCTCTAAGGCAGGCCAGAG
TCTGGTCCGATGCCTTGAGCAGGCCCTTCGGGATGTACCCAGAGACAGACATGCTAGCACACCA
CTCTACCTGGGAGCTACAGCAGGCATGCGCCTGCTCAACCTGACCAGCCCAGAGGCCACAGCCA
GGGTGCTTGAGGCAGTGACACAGACGCTCACACAGTACCCCTTTGACTTCCGTGGTGCTCGCAT
CCTCTCGGGACAGGATGAAGGGGTGTTTGGCTGGGTGACTGCCAACTACCTGCTGGAGAACTTC
ATCAAGTATGGCTGGGTGGGCCGGTGGATACGGCCAAGGAAGGGAACACTGGGGGCCATGGACC
TTGGGGGTGCTTCGACACAGATCACCTTTGAGACAACCAGTCCCTCTGAAGATCCAGGCAACGA
GGTTCATTTGCGACTCTATGGCCAGCATTACCGCGTTTACACACATAGCTTCCTCTGCTATGGC
CGAGACCAGATTCTCCTGAGGCTTCTGGCCAGTGCCCTCCAGATCCATCGCTTCCACCCCTGCT
GGCCAAAGGGCTACTCTACCCAAGTGCTGCTCCAGGAAGTCTACCAGTCGCCATGCACGATGGG
TCAGCGTCCCCGGGCCTTCAATGGCAGTGCCATCGTCAGCCTGTCAGGAACCAGCAATGCTACC
CTGTGTCGTGACCTCGTCTCTCGGCTCTTCAACATCTCCTCCTGCCCCTTTTCCCAATGCTCCT
TCAATGGGGTCTTCCAGCCTCCCGTGGCTGGAAACTTCATAGCCTTTTCTGCTTTCTACTATAC
TGTGGACTTCCTGACAACAGTGATGGGGCTGCCTGTGGGAACCCTGAAGCAGCTGGAGGAAGCC
ACAGAGATCACCTGCAACCAGACATGGACTGAATGGCCATCTTTGCTGTCCTCTCCATCCAGCT
GTTGGAAGGGGAGAACACAAGGTTCCAGCAGTCACGAGCTTCAGGCCCGAGTGCCAGGACAAAA
GACCCGCCTGGCTGACTACTGTGCTGTAGCCATGTTCATACATCAGCTTCTGAGCCGTGGTTAC
CACTTCGATGAGCGCTCCTTCAGAGAAGTGGTCTTCCAAAAGAAGGCTGCAGACACGGCTGTCG
GCTGGGCGCTGGGCTACATGCTGAATTTGACTAACCTGATTCCTGCCGACCTCCCCGGACTACG
CAAGGGCACCCACTTCAGCTCCTGGGTCGCTCTCCTGCTGCTCTTCACAGTCCTGATCTTGGCG
GCGCTGGTCCTGCTCCTGCGCCAGGTGCGTTCTGCCAAGTCTCCAGGCGCCCTCTAGGGGTGAA
CTGGGAGCCTCTCCCAACTCCCTACTATCCCTCCCTTCCAGAGGGCATCTCTGACCCTGAAGCA
GCCTGGAAACCAACGTTCCCTATCTACATTCACAGAAAGCCTACGTGGGCAGCCCTGAGTTCTC
AATTAATCCTCCTCTCTCTTCCTAGGATGTCAGGTCTCAGCCTGTGACTCAGGGTGAGGTCCAT
TCGGAGTGGGACTTTTGTTCTGATCTTCAGGGCCCTGGGAACTTTCTGTCTGGGCCTTTAGAAA
GGCAGGCACCAGAGCCTACAGGCTGGGAGTCAGTTCCATGCCTACTTGTAAAAACTTTTGTAAT
AAAAGATTTTTCCTAGAGCAGCGAAGTGTTCCTAGGGCGGGGCACCCTTGGTCGCCTGTTCTGC
CTTCCAGCTGTGTTGTTGGTTATTTGGGTGAAACCTGGTTCCAAGATACTGACTTTTCTTGCTT
CCTCCCTTTTTGTACCAGGCCTGAGGCAATGGAGGCACTCCTACCTACTCTGCTCTGGGGTTGT
CCCTGAGTCTGAGTTTTCTCTGACAGACAGAACCCTAACAAACCGCAGGTCCCCCTCGAATGAC
ATCCACAGGAATTGAGGCTGCACTCCCAAGCTGTTTTTTCCAACTGATACTTGAGATATTAGTA
GGCCTGAAGGTCAGAGGCACCTGCATCCGCAGCCTAAGTCTCTGTGTTCTCTAGGTGGGAAAGT
GTGACCCGAGTATGGGACTCTCTTGCCTCTTTCATGGGAAATTAGCTCAGACTCTATTTCTGTG
CAGTCAATGCCTTAAGGGCTGGGTTGGGATGGTAGCTCGAGTGCATGCGTGCGCGACACACACA
CACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA

hide sequence

RefSeq Acc Id:

XM_039105790 ⟹ XP_038961718

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	8,213,576 - 8,219,041 (+)	NCBI

RefSeq Acc Id:

XM_039105791 ⟹ XP_038961719

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	8,213,613 - 8,219,041 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_742027	(Get FASTA)	NCBI Sequence Viewer
	XP_006233706	(Get FASTA)	NCBI Sequence Viewer
	XP_017447512	(Get FASTA)	NCBI Sequence Viewer
	XP_017447513	(Get FASTA)	NCBI Sequence Viewer
	XP_038961718	(Get FASTA)	NCBI Sequence Viewer
	XP_038961719	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD42303	(Get FASTA)	NCBI Sequence Viewer
	AAF87740	(Get FASTA)	NCBI Sequence Viewer
	AAH86558	(Get FASTA)	NCBI Sequence Viewer
	ABN58479	(Get FASTA)	NCBI Sequence Viewer
	CAA72533	(Get FASTA)	NCBI Sequence Viewer
	EDL93594	(Get FASTA)	NCBI Sequence Viewer
	O35795	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_742027 ⟸ NM_172030
- Peptide Label:	precursor
- UniProtKB:	O35795 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAGKLVSLVPPLLLAAAGLAGLLLLCVPTQDVREPPALKYGIVLDAGSSHTSMFVYKWPADKEN DTGIVGQHSSCDVQGGGISSYANDPSKAGQSLVRCLEQALRDVPRDRHASTPLYLGATAGMRLL NLTSPEATARVLEAVTQTLTQYPFDFRGARILSGQDEGVFGWVTANYLLENFIKYGWVGRWIRP RKGTLGAMDLGGASTQITFETTSPSEDPGNEVHLRLYGQHYRVYTHSFLCYGRDQILLRLLASA LQIHRFHPCWPKGYSTQVLLQEVYQSPCTMGQRPRAFNGSAIVSLSGTSNATLCRDLVSRLFNI SSCPFSQCSFNGVFQPPVTGNFIAFSAFYYTVDFLTTVMGLPVGTLKQLEEATEITCNQTWTEL QARVPGQKTRLADYCAVAMFIHQLLSRGYHFDERSFREVVFQKKAADTAVGWALGYMLNFTNLI PADLPGLRKGTHFSSWVALLLLFTVLILAALVLLLRQVRSAKSPGAL hide sequence

RefSeq Acc Id:	XP_006233706 ⟸ XM_006233644
- Peptide Label:	isoform X2
- UniProtKB:	F1M7N2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGKLVSLVPPLLLAAAGLAGLLLLCVPTQDVREPPALKYGIVLDAGSSHTSMFVYKWPADKEN DTGIVGQHSSCDVQGGGISSYANDPSKAGQSLVRCLEQALRDVPRDRHASTPLYLGATAGMRLL NLTSPEATARVLEAVTQTLTQYPFDFRGARILSGQDEGVFGWVTANYLLENFIKYGWVGRWIRP RKGTLGAMDLGGASTQITFETTSPSEDPGNEVHLRLYGQHYRVYTHSFLCYGRDQILLRLLASA LQIHRFHPCWPKGYSTQVLLQEVYQSPCTMGQRPRAFNGSAIVSLSGTSNATLCRDLVSRLFNI SSCPFSQCSFNGVFQPPVAGNFIAFSAFYYTVDFLTTVMGLPVGTLKQLEEATEITCNQTWTEL QARVPGQKTRLADYCAVAMFIHQLLSRGYHFDERSFREVVFQKKAADTAVGWALGYMLNLTNLI PADLPGLRKGTHFSSWVALLLLFTVLILAALVLLLRQDVRSQPVTQGEVHSEWDFCSDLQGPGN FLSGPLERQAPEPTGWESVPCLLVKTFVIKDFS hide sequence

RefSeq Acc Id:

XP_017447512 ⟸ XM_017592023

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAGKLVSLVPPLLLAAAGLAGLLLLCVPTQDVREPPALKYGIVLDAGSSHTSMFVYKWPADKEN
DTGIVGQHSSCDVQGGGISSYANDPSKAGQSLVRCLEQALRDVPRDRHASTPLYLGATAGMRLL
NLTSPEATARVLEAVTQTLTQYPFDFRGARILSGQDEGVFGWVTANYLLENFIKYGWVGRWIRP
RKGTLGAMDLGGASTQITFETTSPSEDPGNEVHLRLYGQHYRVYTHSFLCYGRDQILLRLLASA
LQIHRFHPCWPKGYSTQVLLQEVYQSPCTMGQRPRAFNGSAIVSLSGTSNATLCRDLVSRLFNI
SSCPFSQCSFNGVFQPPVAGNFIAFSAFYYTVDFLTTVMGLPVGTLKQLEEATEITCNQTWTEW
PSLLSSPSSCWKGRTQGSSSHELQARVPGQKTRLADYCAVAMFIHQLLSRGYHFDERSFREVVF
QKKAADTAVGWALGYMLNLTNLIPADLPGLRKGTHFSSWVALLLLFTVLILAALVLLLRQDVRS
QPVTQGEVHSEWDFCSDLQGPGNFLSGPLERQAPEPTGWESVPCLLVKTFVIKDFS

hide sequence

RefSeq Acc Id:

XP_017447513 ⟸ XM_017592024

- Peptide Label:

isoform X4

- Sequence:

show sequence

MAGKLVSLVPPLLLAAAGLAGLLLLCVPTQDVREPPALKYGIVLDAGSSHTSMFVYKWPADKEN
DTGIVGQHSSCDVQGGGISSYANDPSKAGQSLVRCLEQALRDVPRDRHASTPLYLGATAGMRLL
NLTSPEATARVLEAVTQTLTQYPFDFRGARILSGQDEGVFGWVTANYLLENFIKYGWVGRWIRP
RKGTLGAMDLGGASTQITFETTSPSEDPGNEVHLRLYGQHYRVYTHSFLCYGRDQILLRLLASA
LQIHRFHPCWPKGYSTQVLLQEVYQSPCTMGQRPRAFNGSAIVSLSGTSNATLCRDLVSRLFNI
SSCPFSQCSFNGVFQPPVAGNFIAFSAFYYTVDFLTTVMGLPVGTLKQLEEATEITCNQTWTEW
PSLLSSPSSCWKGRTQGSSSHELQARVPGQKTRLADYCAVAMFIHQLLSRGYHFDERSFREVVF
QKKAADTAVGWALGYMLNLTNLIPADLPGLRKGTHFSSWVALLLLFTVLILAALVLLLRQVRSA
KSPGAL

hide sequence

RefSeq Acc Id:

ENSRNOP00000017829 ⟸ ENSRNOT00000017829

RefSeq Acc Id:	XP_038961718 ⟸ XM_039105790
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038961719 ⟸ XM_039105791
- Peptide Label:	isoform X5

RefSeq Acc Id:

ENSRNOP00000091377 ⟸ ENSRNOT00000102806

RefSeq Acc Id:

ENSRNOP00000096205 ⟸ ENSRNOT00000112091

RefSeq Acc Id:

ENSRNOP00000086303 ⟸ ENSRNOT00000094013

RefSeq Acc Id:

ENSRNOP00000018927 ⟸ ENSRNOT00000018927

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O35795-F1-model_v2	AlphaFold	O35795	1-495	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691875

Promoter ID:

EPDNEW_R2400

Type:

initiation region

Name:

Entpd2_1

Description:

ectonucleoside triphosphate diphosphohydrolase 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	2,617,851 - 2,617,911	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:69266	AgrOrtholog
BioCyc Gene	G2FUF-50457	BioCyc
Ensembl Genes	ENSRNOG00000013102	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000017829	ENTREZGENE
	ENSRNOP00000017829.3	UniProtKB/TrEMBL
	ENSRNOP00000086303	ENTREZGENE
	ENSRNOP00000086303.1	UniProtKB/TrEMBL
	ENSRNOP00000091377.1	UniProtKB/TrEMBL
	ENSRNOP00000096205.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000017829	ENTREZGENE
	ENSRNOT00000017829.5	UniProtKB/TrEMBL
	ENSRNOT00000094013	ENTREZGENE
	ENSRNOT00000094013.1	UniProtKB/TrEMBL
	ENSRNOT00000102806.1	UniProtKB/TrEMBL
	ENSRNOT00000112091.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7302083	IMAGE-MGC_LOAD
InterPro	GDA1_CD39_NTPase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NPDC1	UniProtKB/TrEMBL
KEGG Report	rno:64467	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105301	IMAGE-MGC_LOAD
NCBI Gene	64467	ENTREZGENE
PANTHER	PTHR11782	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR23352	UniProtKB/TrEMBL
Pfam	GDA1_CD39	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NPDC1	UniProtKB/TrEMBL
PhenoGen	Entpd2	PhenoGen
PROSITE	GDA1_CD39_NTPASE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR	TC230447
UniProt	A0A8I6A5S8_RAT	UniProtKB/TrEMBL
	A0A8I6AFG9_RAT	UniProtKB/TrEMBL
	A0A8I6AS12_RAT	UniProtKB/TrEMBL
	A3FKJ7_RAT	UniProtKB/TrEMBL
	ENTP2_RAT	UniProtKB/Swiss-Prot
	F1M7N2	ENTREZGENE, UniProtKB/TrEMBL
	O35795	ENTREZGENE
	Q5RJP4_RAT	UniProtKB/TrEMBL
UniProt Secondary	Q9JHY5	UniProtKB/Swiss-Prot
	Q9WVE7	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Entpd2	ectonucleoside triphosphate diphosphohydrolase 2			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in portal fibroblasts near hepatic bile duct epithelial basolateral membranes	728486

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)