Npnt (nephronectin) - Rat Genome Database

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Gene: Npnt (nephronectin) Rattus norvegicus
Analyze
Symbol: Npnt
Name: nephronectin
RGD ID: 1593709
Description: Predicted to enable integrin binding activity. Predicted to be involved in several processes, including cell-cell adhesion mediated by integrin; pilomotor reflex; and positive regulation of metabolic process. Predicted to act upstream of or within several processes, including branching involved in ureteric bud morphogenesis; positive regulation of cell-substrate adhesion; and positive regulation of transforming growth factor beta receptor signaling pathway. Predicted to be located in basement membrane; extracellular region; and smooth muscle contractile fiber. Orthologous to human NPNT (nephronectin); INTERACTS WITH acrylamide; alpha-Zearalanol; fentin chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC686753; similar to nephronectin isoform a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82224,065,191 - 224,133,567 (-)NCBIGRCr8
mRatBN7.22221,391,151 - 221,459,527 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2221,391,153 - 221,459,401 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2229,049,550 - 229,117,766 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02226,949,232 - 227,017,459 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02221,806,890 - 221,875,109 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02238,001,767 - 238,068,886 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2238,002,990 - 238,068,694 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02256,541,460 - 256,609,626 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2213,627,605 - 213,693,773 (-)NCBICelera
Cytogenetic Map2q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-palmitoylglycerol  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chlorpyrifos  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dichloroacetic acid  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
etoposide  (ISO)
fentin chloride  (EXP)
genistein  (ISO)
inulin  (ISO)
iron dichloride  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
mercury dibromide  (ISO)
methylmercury chloride  (ISO)
nickel atom  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phosgene  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
propanal  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11470831   PMID:11546798   PMID:17537792   PMID:18757743   PMID:19199708   PMID:19342381   PMID:19944102   PMID:21335239   PMID:21689636   PMID:24006456  


Genomics

Comparative Map Data
Npnt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82224,065,191 - 224,133,567 (-)NCBIGRCr8
mRatBN7.22221,391,151 - 221,459,527 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2221,391,153 - 221,459,401 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2229,049,550 - 229,117,766 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02226,949,232 - 227,017,459 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02221,806,890 - 221,875,109 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02238,001,767 - 238,068,886 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2238,002,990 - 238,068,694 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02256,541,460 - 256,609,626 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2213,627,605 - 213,693,773 (-)NCBICelera
Cytogenetic Map2q43NCBI
NPNT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384105,895,471 - 105,971,671 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4105,894,775 - 106,004,027 (+)EnsemblGRCh38hg38GRCh38
GRCh374106,816,628 - 106,892,828 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364107,036,054 - 107,112,277 (+)NCBINCBI36Build 36hg18NCBI36
Celera4104,115,729 - 104,192,091 (+)NCBICelera
Cytogenetic Map4q24NCBI
HuRef4102,551,277 - 102,627,657 (+)NCBIHuRef
CHM1_14106,793,392 - 106,869,624 (+)NCBICHM1_1
T2T-CHM13v2.04109,206,597 - 109,282,798 (+)NCBIT2T-CHM13v2.0
Npnt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393132,587,506 - 132,656,052 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3132,587,506 - 132,656,052 (-)EnsemblGRCm39 Ensembl
GRCm383132,881,745 - 132,950,291 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3132,881,745 - 132,950,291 (-)EnsemblGRCm38mm10GRCm38
MGSCv373132,545,647 - 132,613,255 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363132,819,989 - 132,887,597 (-)NCBIMGSCv36mm8
Celera3139,306,540 - 139,374,486 (-)NCBICelera
Cytogenetic Map3G3NCBI
cM Map361.52NCBI
Npnt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554963,320,946 - 3,388,694 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554963,321,310 - 3,388,625 (-)NCBIChiLan1.0ChiLan1.0
NPNT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23103,983,290 - 104,063,450 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14104,278,633 - 104,358,634 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0498,365,727 - 98,445,746 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14108,974,971 - 109,054,671 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4108,974,971 - 109,054,671 (+)Ensemblpanpan1.1panPan2
NPNT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13226,706,147 - 26,781,792 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3226,705,476 - 26,781,275 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3215,244,637 - 15,320,270 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03226,938,244 - 27,013,911 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3226,938,240 - 27,013,899 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13226,934,668 - 27,010,414 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03226,679,785 - 26,755,603 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03213,106,933 - 13,182,805 (-)NCBIUU_Cfam_GSD_1.0
Npnt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530114,346,316 - 14,448,517 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368141,095,974 - 1,165,866 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368141,096,604 - 1,165,755 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NPNT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8115,779,840 - 115,861,137 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18115,768,963 - 115,861,170 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28124,205,423 - 124,229,272 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NPNT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1753,924,655 - 54,001,320 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl753,924,701 - 54,001,852 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603732,544,147 - 32,621,638 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Npnt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248302,881,638 - 2,943,586 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248302,881,948 - 2,943,577 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Npnt
643 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:300
Count of miRNA genes:88
Interacting mature miRNAs:89
Transcripts:ENSRNOT00000072131, ENSRNOT00000073037, ENSRNOT00000075259
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2217139753236660713Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2218414747240841241Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2221136523241305619Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
1359019Hrtrt19Heart rate QTL 192.9heart pumping trait (VT:2000009)heart rate (CMO:0000002)2219753301226277316Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000078608   ⟹   ENSRNOP00000073239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2221,391,165 - 221,459,333 (-)Ensembl
Rnor_6.0 Ensembl2238,002,990 - 238,068,694 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079479   ⟹   ENSRNOP00000074549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2221,391,165 - 221,459,333 (-)Ensembl
Rnor_6.0 Ensembl2238,002,990 - 238,068,694 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000090834   ⟹   ENSRNOP00000069738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2221,391,156 - 221,459,376 (-)Ensembl
Rnor_6.0 Ensembl2238,002,990 - 238,068,694 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118889   ⟹   ENSRNOP00000077007
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2221,391,153 - 221,459,401 (-)Ensembl
RefSeq Acc Id: NM_001402176   ⟹   NP_001389105
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82224,065,191 - 224,133,435 (-)NCBI
mRatBN7.22221,391,154 - 221,459,401 (-)NCBI
RefSeq Acc Id: XM_039103852   ⟹   XP_038959780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82224,065,191 - 224,133,567 (-)NCBI
mRatBN7.22221,391,151 - 221,459,527 (-)NCBI
RefSeq Acc Id: XM_039103854   ⟹   XP_038959782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82224,065,191 - 224,133,542 (-)NCBI
mRatBN7.22221,391,151 - 221,459,527 (-)NCBI
RefSeq Acc Id: XM_039103855   ⟹   XP_038959783
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82224,065,191 - 224,133,510 (-)NCBI
mRatBN7.22221,391,151 - 221,459,526 (-)NCBI
Ensembl Acc Id: ENSRNOP00000074549   ⟸   ENSRNOT00000079479
Ensembl Acc Id: ENSRNOP00000069738   ⟸   ENSRNOT00000090834
Ensembl Acc Id: ENSRNOP00000073239   ⟸   ENSRNOT00000078608
RefSeq Acc Id: XP_038959782   ⟸   XM_039103854
- Peptide Label: isoform X2
- UniProtKB: A0A8I5Y706 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959780   ⟸   XM_039103852
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K500 (UniProtKB/TrEMBL),   A6HVU1 (UniProtKB/TrEMBL),   A0A0G2K8C1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959783   ⟸   XM_039103855
- Peptide Label: isoform X3
- UniProtKB: A6HVT9 (UniProtKB/TrEMBL),   A0A0G2JW46 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000077007   ⟸   ENSRNOT00000118889
RefSeq Acc Id: NP_001389105   ⟸   NM_001402176
- Peptide Label: precursor
- UniProtKB: A0A0G2K8C1 (UniProtKB/TrEMBL),   A6HVU0 (UniProtKB/TrEMBL)
Protein Domains
EGF-like   MAM

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593709 AgrOrtholog
BioCyc Gene G2FUF-51172 BioCyc
Ensembl Genes ENSRNOG00000052873 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000078608 ENTREZGENE
  ENSRNOT00000078608.2 UniProtKB/TrEMBL
  ENSRNOT00000079479.2 UniProtKB/TrEMBL
  ENSRNOT00000090834 ENTREZGENE
  ENSRNOT00000090834.2 UniProtKB/TrEMBL
  ENSRNOT00000118889 ENTREZGENE
  ENSRNOT00000118889.1 UniProtKB/TrEMBL
  ENSRNOT00000136700 ENTREZGENE
Gene3D-CATH 2.60.120.200 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  EGF_dom UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  MAM_dom UniProtKB/TrEMBL
  Nephronectin_domain UniProtKB/TrEMBL
  NOTCH1_EGF-like UniProtKB/TrEMBL
NCBI Gene 686753 ENTREZGENE
PANTHER NEPHRONECTIN UniProtKB/TrEMBL
  PA14 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  MAM UniProtKB/TrEMBL
PhenoGen Npnt PhenoGen
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  MAM_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000052873 RatGTEx
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  MAM UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
UniProt A0A0G2JW46 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K500 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K8C1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y706 ENTREZGENE, UniProtKB/TrEMBL
  A6HVT9 ENTREZGENE, UniProtKB/TrEMBL
  A6HVU0 ENTREZGENE, UniProtKB/TrEMBL
  A6HVU1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-21 Npnt  nephronectin  LOC686753  similar to nephronectin isoform a  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC686753  similar to nephronectin isoform a      Symbol and Name status set to provisional 70820 PROVISIONAL