Rora (RAR-related orphan receptor A)

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Gene: Rora (RAR-related orphan receptor A) Rattus norvegicus

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Symbol:

Rora

Name:

RAR-related orphan receptor A

RGD ID:

1308419

Description:

Predicted to enable several functions, including beta-catenin binding activity; oxysterol binding activity; and transcription coregulator binding activity. Involved in circadian rhythm. Predicted to be located in nucleolus. Predicted to be active in nucleus. Orthologous to human RORA (RAR related orphan receptor A); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC103693129; LOC300807; nuclear receptor ROR-alpha; nuclear receptor ROR-alpha-like; RAR-related orphan receptor alpha

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RORA (RAR related orphan receptor A)	HGNC	Ensembl, HomoloGene, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Rora (RAR-related orphan receptor alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rora (RAR related orphan receptor A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RORA (RAR related orphan receptor A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RORA (RAR related orphan receptor A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rora (RAR related orphan receptor A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RORA (RAR related orphan receptor A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RORA (RAR related orphan receptor A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rora (RAR related orphan receptor A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RORA (RAR related orphan receptor A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rora (RAR-related orphan receptor alpha)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	roraa (RAR-related orphan receptor A, paralog a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	nhr-23	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Hr3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rora	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	78,182,710 - 78,915,730 (+)	NCBI		GRCr8
mRatBN7.2	8	69,301,635 - 70,034,741 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	69,301,733 - 70,025,931 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	8	75,515,886 - 75,616,477 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	75,516,904 - 75,607,212 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	79,195,918 - 79,934,499 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	73,052,282 - 73,817,764 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	73,744,425 - 73,837,420 (+)	NCBI
Celera	8	71,690,522 - 71,789,466 (-)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Bloom syndrome (ISO)

colorectal cancer (ISO)

genetic disease (ISO)

INTELLECTUAL DEVELOPMENTAL DISORDER WITH OR WITHOUT EPILEPSY OR CEREBELLAR ATAXIA (ISO)

intellectual disability (ISO)

Neurodevelopmental Disorders (ISO)

Stomach Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-anisomycin (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (EXP,ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

25-hydroxycholesterol (ISO)

3,4-dichloroaniline (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-phenoxybenzoic acid (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

all-trans-retinol (EXP)

amphotericin B (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bifenthrin (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

cannabidiol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chenodeoxycholic acid (ISO)

chloroprene (EXP,ISO)

chlorpyrifos (ISO)

choline (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cortisol (ISO)

cycloprothrin (ISO)

cyclosporin A (ISO)

cyhalothrin (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP,ISO)

dichloromethane (ISO)

diclofenac (ISO)

difenoconazole (ISO)

dioxygen (ISO)

diuron (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

endrin (ISO)

enilconazole (ISO)

epoxiconazole (ISO)

esketamine (ISO)

ethanol (ISO)

flucythrinate (ISO)

fluoranthene (ISO)

flutamide (EXP)

fluvalinate (ISO)

folic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hexaconazole (ISO)

hydrogen cyanide (ISO)

Indeno[1,2,3-cd]pyrene (ISO)

indole-3-methanol (EXP)

isotretinoin (ISO)

ketamine (EXP)

L-methionine (ISO)

leflunomide (EXP)

lipopolysaccharide (ISO)

maneb (ISO)

melatonin (ISO)

methapyrilene (ISO)

methotrexate (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N,N-diethyl-m-toluamide (EXP)

N-acetyl-L-cysteine (EXP)

N-nitrosodiethylamine (EXP)

nefazodone (EXP)

nickel atom (ISO)

nickel dichloride (ISO)

ozone (EXP,ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

phenobarbital (ISO)

piperonyl butoxide (EXP)

pirinixic acid (ISO)

potassium cyanide (ISO)

quercetin (ISO)

rotenone (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

sotorasib (ISO)

styrene (ISO)

tamoxifen (ISO)

tert-butyl hydroperoxide (ISO)

testosterone enanthate (ISO)

tetrachloromethane (ISO)

tetraconazole (ISO)

thimerosal (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trametinib (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triflumizole (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

trovafloxacin (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

vincristine (ISO)

vitamin E (ISO)

vorinostat (ISO)

zinc dichloride (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

angiogenesis (ISO)

cellular response to hypoxia (ISO)

cellular response to interleukin-1 (ISO)

cellular response to sterol (ISO)

cellular response to tumor necrosis factor (ISO)

cerebellar granule cell precursor proliferation (ISO)

cerebellar Purkinje cell differentiation (ISO)

cGMP metabolic process (ISO)

cholesterol homeostasis (ISO)

circadian regulation of gene expression (ISO)

circadian rhythm (IEP)

intracellular receptor signaling pathway (ISO)

muscle cell differentiation (ISO)

negative regulation of canonical NF-kappaB signal transduction (ISO)

negative regulation of fat cell differentiation (ISO)

negative regulation of inflammatory response (IBA,ISO)

nitric oxide biosynthetic process (ISO)

positive regulation of circadian rhythm (ISO)

positive regulation of DNA-templated transcription (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

positive regulation of vascular endothelial growth factor production (ISO)

regulation of circadian rhythm (ISO)

regulation of DNA-templated transcription (ISO)

regulation of glucose metabolic process (ISO)

regulation of macrophage activation (ISO)

regulation of smoothened signaling pathway (ISO)

regulation of steroid metabolic process (ISO)

regulation of transcription by RNA polymerase II (IBA,ISO)

T-helper 17 cell differentiation (ISO)

triglyceride homeostasis (ISO)

xenobiotic metabolic process (ISO)

Cellular Component

nucleolus (IEA,ISO)

nucleus (IBA,ISO)

Molecular Function

beta-catenin binding (ISO)

DNA binding (ISO)

DNA-binding transcription factor activity (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (ISO)

ligand-activated transcription factor activity (ISO)

nuclear receptor activity (IBA)

oxysterol binding (IBA,ISO)

protein binding (IPI,ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (ISO)

sequence-specific DNA binding (ISO)

transcription coactivator binding (ISO)

transcription coregulator binding (ISO)

transcription corepressor binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Hyperlipidaemia impairs the circadian clock and physiological homeostasis of vascular smooth muscle cells via the suppression of Smarcd1.	Chen S, etal., J Pathol. 2014 Jun;233(2):159-69. doi: 10.1002/path.4338. Epub 2014 Mar 28.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Circadian expression of clock genes and clock-controlled genes in the rat retina.	Kamphuis W, etal., Biochem Biophys Res Commun. 2005 Apr 29;330(1):18-26.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:1565842	PMID:7518067	PMID:7838156	PMID:7838158	PMID:7926749	PMID:8996814	PMID:9328355	PMID:9862959	PMID:10478845	PMID:11053433	PMID:11252722	PMID:14687547
PMID:15199055	PMID:17476214	PMID:17545671	PMID:17666523	PMID:17693386	PMID:18055760	PMID:18164222	PMID:18658046	PMID:18957222	PMID:19039140	PMID:19324970	PMID:19955433
PMID:19965867	PMID:21292463	PMID:21628546	PMID:22753030	PMID:23172836	PMID:23723244	PMID:29032151	PMID:33669807	PMID:33991534

Genomics

Comparative Map Data

Rora
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	78,182,710 - 78,915,730 (+)	NCBI		GRCr8
mRatBN7.2	8	69,301,635 - 70,034,741 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	69,301,733 - 70,025,931 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	8	75,515,886 - 75,616,477 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	75,516,904 - 75,607,212 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	79,195,918 - 79,934,499 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	73,052,282 - 73,817,764 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	73,744,425 - 73,837,420 (+)	NCBI
Celera	8	71,690,522 - 71,789,466 (-)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

RORA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	60,488,284 - 61,229,302 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	60,488,284 - 61,229,302 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	60,780,483 - 61,521,501 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	58,576,755 - 59,308,794 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	58,576,754 - 58,671,999	NCBI
Celera	15	37,669,158 - 37,859,340 (-)	NCBI		Celera
Cytogenetic Map	15	q22.2	NCBI
HuRef	15	37,602,935 - 37,793,081 (-)	NCBI		HuRef
CHM1_1	15	60,900,085 - 61,640,967 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	58,291,519 - 59,032,551 (-)	NCBI		T2T-CHM13v2.0

Rora
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	68,560,627 - 69,295,528 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	68,561,068 - 69,295,528 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	68,653,404 - 69,388,246 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	68,653,786 - 69,388,246 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	68,501,609 - 69,226,838 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	68,452,966 - 69,178,195 (+)	NCBI		MGSCv36	mm8
Celera	9	65,876,634 - 66,600,643 (+)	NCBI		Celera
Cytogenetic Map	9	C	NCBI
cM Map	9	37.45	NCBI

Rora
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	14,262,190 - 14,425,233 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955450	14,262,199 - 14,434,611 (+)	NCBI	ChiLan1.0	ChiLan1.0

RORA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	49,756,431 - 50,500,133 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	53,939,419 - 54,677,888 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	39,461,553 - 40,200,118 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	57,763,345 - 57,901,854 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	57,771,735 - 57,980,460 (-)	Ensembl	panpan1.1		panPan2

RORA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	25,315,974 - 26,026,708 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	25,325,275 - 26,026,623 (-)	NCBI	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	25,391,427 - 25,943,891 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	25,492,382 - 26,204,624 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	25,499,048 - 26,204,099 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	25,420,874 - 26,136,597 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	25,497,210 - 26,208,111 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	25,727,551 - 26,439,038 (-)	NCBI		UU_Cfam_GSD_1.0

Rora
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	103,544,814 - 104,221,651 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	21,400,589 - 22,069,643 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	21,402,056 - 21,567,908 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RORA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	111,375,457 - 111,477,703 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	110,719,004 - 111,482,807 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	123,140,609 - 123,247,974 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RORA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	22,263,889 - 23,002,224 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	22,812,445 - 22,993,021 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	118,365,025 - 119,123,454 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rora
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624781	11,014,286 - 11,679,678 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624781	11,014,185 - 11,688,558 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rora
4216 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	89
Count of miRNA genes:	66
Interacting mature miRNAs:	82
Transcripts:	ENSRNOT00000013142
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30856404	75856404	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	30848154	101699754	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	41866876	86866876	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	42692684	90165460	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	30848154	101699754	Rat
1582222	Epfw2	Epididymal fat weight QTL 2	3.2	0.0005	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	8	31737729	76737729	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	35582032	80582032	Rat
4889938	Bss89	Bone structure and strength QTL 89	3.8		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	8	50095249	82460899	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	30848154	101699754	Rat
1300146	Rf17	Renal function QTL 17	2.9		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	8	28242912	73242912	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	28242912	99525068	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	30848154	82460899	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	69349194	112783834	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	27205715	99103503	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	29502665	70386295	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	40713066	82925667	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	41866876	75097878	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	35551938	80551938	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	40713066	93965294	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	27205715	99103503	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46531639	119088626	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1582254	Kidm31	Kidney mass QTL 31	3		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	8	54237644	85365202	Rat
10402857	Bp380	Blood pressure QTL 380		0.95	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	53968765	98968765	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	27205715	99103503	Rat
631216	Stl9	Serum triglyceride level QTL 9	4.71	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	8	41867010	70386132	Rat
5684973	Bss100	Bone structure and strength QTL 100	4.7		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	8	50095249	82460899	Rat
1582243	Bw66	Body weight QTL 66	3.4	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	8	54237644	85365202	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	30848154	82460899	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	43296169	98968765	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	54259986	100382532	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	30188867	94457446	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	43296169	98968765	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	30848154	82460899	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	43296169	98968765	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	43296169	98968765	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	43296169	98968765	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	43296169	98968765	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	51351728	107062046	Rat
2313086	Bss60	Bone structure and strength QTL 60	4.1	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	8	50095249	82460899	Rat
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	61290298	119084929	Rat
2293697	Bmd39	Bone mineral density QTL 39			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	8	54043744	98968765	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	46531722	99083736	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	36469535	99083736	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
631653	Bp125	Blood pressure QTL 125	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	66142385	111142385	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
2303564	Gluco43	Glucose level QTL 43	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	26130187	71130187	Rat
2303570	Gluco48	Glucose level QTL 48	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	49805831	94805831	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	30848154	82460899	Rat
2303572	Insul13	Insulin level QTL 13	2		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	8	26130187	71130187	Rat
2301402	Bp316	Blood pressure QTL 316		0.005	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	53968765	98968765	Rat
631664	Hcar3	Hepatocarcinoma resistance QTL 3	2.9	0.0005	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	8	54237644	99103503	Rat

Markers in Region

D8Mgh17

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	69,349,194 - 69,349,344 (+)	MAPPER	mRatBN7.2
mRatBN7.2	8	69,349,194 - 69,349,344 (-)	MAPPER	mRatBN7.2
Rnor_6.0	8	80,839,918 - 80,840,067	NCBI	Rnor6.0
Rnor_6.0	8	74,917,593 - 74,917,742	NCBI	Rnor6.0
Rnor_5.0	8	79,244,914 - 79,245,063	UniSTS	Rnor5.0
Rnor_5.0	8	76,889,142 - 76,889,291	UniSTS	Rnor5.0
RGSC_v3.4	8	73,102,006 - 73,102,155	UniSTS	RGSC3.4
RGSC_v3.4	8	73,102,005 - 73,102,155	RGD	RGSC3.4
RGSC_v3.1	8	73,121,059 - 73,121,209	RGD
Celera	8	72,371,421 - 72,371,570	UniSTS
Cytogenetic Map	8	q24	UniSTS

D8Rat33

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	69,910,240 - 69,910,402 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	75,491,856 - 75,492,017	NCBI	Rnor6.0
Rnor_5.0	8	79,818,765 - 79,818,926	UniSTS	Rnor5.0
RGSC_v3.4	8	73,700,766 - 73,700,927	UniSTS	RGSC3.4
RGSC_v3.4	8	73,700,765 - 73,701,128	RGD	RGSC3.4
RGSC_v3.1	8	73,719,820 - 73,719,981	RGD
Celera	8	71,813,307 - 71,813,468	UniSTS
RH 3.4 Map	8	871.79	RGD
RH 3.4 Map	8	871.79	UniSTS
RH 2.0 Map	8	646.7	RGD
SHRSP x BN Map	8	44.82	RGD
FHH x ACI Map	8	51.31	RGD
Cytogenetic Map	8	q24	UniSTS

D8Rat146

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	69,352,596 - 69,352,742 (+)	MAPPER	mRatBN7.2
mRatBN7.2	8	69,352,596 - 69,352,742 (-)	MAPPER	mRatBN7.2
Rnor_6.0	8	74,920,991 - 74,921,134	NCBI	Rnor6.0
Rnor_6.0	8	80,836,277 - 80,836,420	NCBI	Rnor6.0
Rnor_5.0	8	79,248,312 - 79,248,455	UniSTS	Rnor5.0
Rnor_5.0	8	76,885,501 - 76,885,644	UniSTS	Rnor5.0
RGSC_v3.4	8	73,105,404 - 73,105,547	UniSTS	RGSC3.4
RGSC_v3.4	8	73,105,403 - 73,105,547	RGD	RGSC3.4
RGSC_v3.1	8	73,124,457 - 73,124,601	RGD
Celera	8	72,368,036 - 72,368,173	UniSTS
SHRSP x BN Map	8	44.82	RGD
SHRSP x BN Map	8	44.82	UniSTS
Cytogenetic Map	8	q24	UniSTS

D8Rat234

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	69,582,277 - 69,582,478 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	75,151,013 - 75,151,213	NCBI	Rnor6.0
Rnor_6.0	8	74,609,451 - 74,609,651	NCBI	Rnor6.0
Rnor_5.0	8	79,478,996 - 79,479,196	UniSTS	Rnor5.0
Rnor_5.0	8	78,936,283 - 78,936,483	UniSTS	Rnor5.0
RGSC_v3.4	8	73,363,441 - 73,363,641	UniSTS	RGSC3.4
Celera	8	72,140,085 - 72,140,285	UniSTS
SHRSP x BN Map	8	44.83	RGD
SHRSP x BN Map	8	44.83	UniSTS
Cytogenetic Map	8	q24	UniSTS

D8Got108

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	69,892,209 - 69,892,462 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	75,473,828 - 75,474,078	NCBI	Rnor6.0
Rnor_5.0	8	79,800,737 - 79,800,987	UniSTS	Rnor5.0
RGSC_v3.4	8	73,682,736 - 73,682,987	RGD	RGSC3.4
RGSC_v3.4	8	73,682,737 - 73,682,987	UniSTS	RGSC3.4
RGSC_v3.1	8	73,701,791 - 73,702,041	RGD
Celera	8	71,831,207 - 71,831,457	UniSTS
RH 3.4 Map	8	871.2	UniSTS
RH 3.4 Map	8	871.2	RGD
RH 2.0 Map	8	645.0	RGD
Cytogenetic Map	8	q24	UniSTS

D8Got306

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	69,827,011 - 69,827,150 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	77,887,470 - 77,887,608	NCBI	Rnor6.0
Rnor_6.0	8	75,408,639 - 75,408,777	NCBI	Rnor6.0
Rnor_5.0	8	75,197,421 - 75,197,559	UniSTS	Rnor5.0
Rnor_5.0	8	79,735,020 - 79,735,158	UniSTS	Rnor5.0
RGSC_v3.4	8	73,616,925 - 73,617,063	UniSTS	RGSC3.4
Celera	8	71,896,467 - 71,896,620	UniSTS
Cytogenetic Map	8	q24	UniSTS

D8Got305

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	69,361,077 - 69,361,219 (+)	MAPPER	mRatBN7.2
mRatBN7.2	8	69,361,077 - 69,361,219 (-)	MAPPER	mRatBN7.2
Rnor_6.0	8	74,929,559 - 74,929,698	NCBI	Rnor6.0
Rnor_6.0	8	80,827,806 - 80,827,945	NCBI	Rnor6.0
Rnor_5.0	8	79,256,880 - 79,257,019	UniSTS	Rnor5.0
Rnor_5.0	8	76,877,030 - 76,877,169	UniSTS	Rnor5.0
RGSC_v3.4	8	73,113,972 - 73,114,111	UniSTS	RGSC3.4
Celera	8	72,359,545 - 72,359,684	UniSTS
Cytogenetic Map	8	q24	UniSTS

SGC33753

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	69,595,724 - 69,595,850 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	74,622,896 - 74,623,021	NCBI	Rnor6.0
Rnor_6.0	8	75,164,458 - 75,164,583	NCBI	Rnor6.0
Rnor_5.0	8	79,492,441 - 79,492,566	UniSTS	Rnor5.0
Rnor_5.0	8	78,949,728 - 78,949,853	UniSTS	Rnor5.0
RGSC_v3.4	8	73,376,886 - 73,377,011	UniSTS	RGSC3.4
Cytogenetic Map	8	q24	UniSTS

RH138861

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	69,885,046 - 69,885,170 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	75,466,666 - 75,466,789	NCBI	Rnor6.0
Rnor_5.0	8	79,793,575 - 79,793,698	UniSTS	Rnor5.0
RGSC_v3.4	8	73,675,574 - 73,675,697	UniSTS	RGSC3.4
Celera	8	71,838,500 - 71,838,623	UniSTS
RH 3.4 Map	8	871.59	UniSTS
Cytogenetic Map	8	q24	UniSTS

AU049942

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	69,872,924 - 69,873,091 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	75,454,546 - 75,454,710	NCBI	Rnor6.0
Rnor_5.0	8	79,781,455 - 79,781,619	UniSTS	Rnor5.0
RGSC_v3.4	8	73,663,454 - 73,663,618	UniSTS	RGSC3.4
Celera	8	71,850,572 - 71,850,736	UniSTS
Cytogenetic Map	8	q24	UniSTS

RH142618

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	69,995,939 - 69,996,045 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	75,577,518 - 75,577,623	NCBI	Rnor6.0
Rnor_5.0	8	79,904,774 - 79,904,879	UniSTS	Rnor5.0
RGSC_v3.4	8	73,788,039 - 73,788,144	UniSTS	RGSC3.4
Celera	8	71,727,721 - 71,727,826	UniSTS
Cytogenetic Map	8	q24	UniSTS

RH144170

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	69,604,533 - 69,604,633 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	75,173,272 - 75,173,371	NCBI	Rnor6.0
Rnor_6.0	8	74,631,641 - 74,631,740	NCBI	Rnor6.0
Rnor_5.0	8	79,501,255 - 79,501,354	UniSTS	Rnor5.0
Rnor_5.0	8	78,958,473 - 78,958,572	UniSTS	Rnor5.0
RGSC_v3.4	8	73,385,700 - 73,385,799	UniSTS	RGSC3.4
Celera	8	72,117,947 - 72,118,046	UniSTS
RH 3.4 Map	8	872.89	UniSTS
Cytogenetic Map	8	q24	UniSTS

BE101994

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	69,303,682 - 69,303,868 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	74,870,631 - 74,870,816	NCBI	Rnor6.0
Rnor_6.0	8	74,494,016 - 74,494,201	NCBI	Rnor6.0
Rnor_5.0	8	79,197,873 - 79,198,058	UniSTS	Rnor5.0
Rnor_5.0	8	78,820,848 - 78,821,033	UniSTS	Rnor5.0
RGSC_v3.4	8	73,054,237 - 73,054,422	UniSTS	RGSC3.4
Celera	8	72,416,614 - 72,416,799	UniSTS
RH 3.4 Map	8	872.19	UniSTS
Cytogenetic Map	8	q24	UniSTS

BF400829

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	69,619,522 - 69,619,660 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	75,188,241 - 75,188,378	NCBI	Rnor6.0
Rnor_6.0	8	74,646,614 - 74,646,751	NCBI	Rnor6.0
Rnor_5.0	8	79,516,224 - 79,516,361	UniSTS	Rnor5.0
Rnor_5.0	8	78,973,446 - 78,973,583	UniSTS	Rnor5.0
RGSC_v3.4	8	73,400,459 - 73,400,596	UniSTS	RGSC3.4
Celera	8	72,102,940 - 72,103,077	UniSTS
RH 3.4 Map	8	871.79	UniSTS
Cytogenetic Map	8	q24	UniSTS

RH137194

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	69,343,930 - 69,344,138 (+)	MAPPER	mRatBN7.2
mRatBN7.2	8	69,343,930 - 69,344,138 (-)	MAPPER	mRatBN7.2
Rnor_6.0	8	74,912,244 - 74,912,451	NCBI	Rnor6.0
Rnor_6.0	8	80,845,373 - 80,845,580	NCBI	Rnor6.0
Rnor_5.0	8	79,239,565 - 79,239,772	UniSTS	Rnor5.0
Rnor_5.0	8	76,894,597 - 76,894,804	UniSTS	Rnor5.0
RGSC_v3.4	8	73,096,436 - 73,096,643	UniSTS	RGSC3.4
RH 3.4 Map	8	871.59	UniSTS
Cytogenetic Map	8	q24	UniSTS

RH138143

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	69,915,386 - 69,915,611 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	75,497,002 - 75,497,226	NCBI	Rnor6.0
Rnor_5.0	8	79,823,911 - 79,824,135	UniSTS	Rnor5.0
RGSC_v3.4	8	73,705,912 - 73,706,136	UniSTS	RGSC3.4
Celera	8	71,808,098 - 71,808,322	UniSTS
Cytogenetic Map	8	q24	UniSTS

RH138260

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	8	79,592,062 - 79,592,304	NCBI	Rnor5.0
Rnor_5.0	8	76,764,549 - 76,764,791	NCBI	Rnor5.0
RGSC_v3.4	8	73,473,785 - 73,474,026	UniSTS	RGSC3.4
Celera	8	72,029,655 - 72,029,896	UniSTS
RH 3.4 Map	8	871.0	UniSTS
Cytogenetic Map	8	q24	UniSTS

AI406875

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	70,002,382 - 70,002,567 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	75,583,961 - 75,584,145	NCBI	Rnor6.0
Rnor_5.0	8	79,911,217 - 79,911,401	UniSTS	Rnor5.0
RGSC_v3.4	8	73,794,482 - 73,794,666	UniSTS	RGSC3.4
Celera	8	71,721,199 - 71,721,383	UniSTS
RH 3.4 Map	8	871.99	UniSTS
Cytogenetic Map	8	q24	UniSTS

Rora

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	70,025,151 - 70,025,285 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	75,606,890 - 75,607,023	NCBI	Rnor6.0
Rnor_5.0	8	79,934,146 - 79,934,279	UniSTS	Rnor5.0
RGSC_v3.4	8	73,817,411 - 73,817,544	UniSTS	RGSC3.4
Celera	8	71,699,959 - 71,700,092	UniSTS
Cytogenetic Map	8	q24	UniSTS

G64932

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	69,553,775 - 69,554,349 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	77,831,942 - 77,832,515	NCBI	Rnor6.0
Rnor_6.0	8	75,123,678 - 75,124,251	NCBI	Rnor6.0
Rnor_5.0	8	75,251,713 - 75,252,286	UniSTS	Rnor5.0
Rnor_5.0	8	79,451,975 - 79,452,548	UniSTS	Rnor5.0
RGSC_v3.4	8	73,335,777 - 73,336,350	UniSTS	RGSC3.4
Celera	8	72,167,562 - 72,168,132	UniSTS
Cytogenetic Map	8	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001427367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000013142 ⟹ ENSRNOP00000013142

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	69,935,273 - 70,025,931 (+)	Ensembl
Rnor_6.0 Ensembl	8	75,516,904 - 75,607,212 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000039376 ⟹ ENSRNOP00000033960

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	8	74,868,681 - 74,877,837 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111879 ⟹ ENSRNOP00000089140

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	69,301,733 - 70,025,931 (+)	Ensembl

RefSeq Acc Id:

NM_001427366 ⟹ NP_001414295

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	78,816,255 - 78,915,730 (+)	NCBI

RefSeq Acc Id:

NM_001427367 ⟹ NP_001414296

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	78,182,733 - 78,915,730 (+)	NCBI

RefSeq Acc Id:

XM_039082824 ⟹ XP_038938752

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	78,182,710 - 78,915,730 (+)	NCBI
mRatBN7.2	8	69,301,635 - 70,034,741 (+)	NCBI

RefSeq Acc Id:

XM_063265166 ⟹ XP_063121236

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	78,816,159 - 78,915,730 (+)	NCBI

RefSeq Acc Id:

XM_063265167 ⟹ XP_063121237

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	78,723,249 - 78,915,730 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414295	(Get FASTA)	NCBI Sequence Viewer
	NP_001414296	(Get FASTA)	NCBI Sequence Viewer
	XP_038938752	(Get FASTA)	NCBI Sequence Viewer
	XP_063121236	(Get FASTA)	NCBI Sequence Viewer
	XP_063121237	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL84220	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000013142.7
	ENSRNOP00000089140.1

Ensembl Acc Id:

ENSRNOP00000013142 ⟸ ENSRNOT00000013142

RefSeq Acc Id:	XP_038938752 ⟸ XM_039082824
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000033960 ⟸ ENSRNOT00000039376

Ensembl Acc Id:

ENSRNOP00000089140 ⟸ ENSRNOT00000111879

RefSeq Acc Id:	NP_001414296 ⟸ NM_001427367
- Peptide Label:	isoform 1
- UniProtKB:	A0A8I6A803 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121237 ⟸ XM_063265167
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063121236 ⟸ XM_063265166
- Peptide Label:	isoform X2

RefSeq Acc Id:	NP_001414295 ⟸ NM_001427366
- Peptide Label:	isoform 2
- UniProtKB:	F1LZZ3 (UniProtKB/TrEMBL)

Protein Domains

NR LBD Nuclear receptor

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A8Y3-F1-model_v2	AlphaFold	D4A8Y3	1-79	view protein structure
AF-F1LZZ3-F1-model_v2	AlphaFold	F1LZZ3	1-467	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696103

Promoter ID:

EPDNEW_R6622

Type:

initiation region

Name:

Rora_1

Description:

RAR-related orphan receptor A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	75,516,890 - 75,516,950	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308419	AgrOrtholog
BioCyc Gene	G2FUF-29971	BioCyc
Ensembl Genes	ENSRNOG00000027145	Ensembl, UniProtKB/TrEMBL
	ENSRNOG00000049584	Ensembl
Ensembl Transcript	ENSRNOT00000013142.8	UniProtKB/TrEMBL
	ENSRNOT00000111879.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.565.10	UniProtKB/TrEMBL
	3.30.50.10	UniProtKB/TrEMBL
InterPro	NHR_like_domain	UniProtKB/TrEMBL
	NR_DBD_ROR	UniProtKB/TrEMBL
	Nucl_hrmn_rcpt_lig-bd	UniProtKB/TrEMBL
	Nuclear_hrmn_rcpt	UniProtKB/TrEMBL
	ROR_rcpt	UniProtKB/TrEMBL
	Znf_hrmn_rcpt	UniProtKB/TrEMBL
	Znf_NHR/GATA	UniProtKB/TrEMBL
NCBI Gene	300807	ENTREZGENE
PANTHER	NUCLEAR HORMONE RECEPTOR HR3-RELATED	UniProtKB/TrEMBL
	NUCLEAR RECEPTOR ROR-ALPHA	UniProtKB/TrEMBL
Pfam	Hormone_recep	UniProtKB/TrEMBL
	zf-C4	UniProtKB/TrEMBL
PharmGKB	RORA	RGD
PhenoGen	Rora	PhenoGen
PRINTS	RORNUCRECPTR	UniProtKB/TrEMBL
	STRDHORMONER	UniProtKB/TrEMBL
	STROIDFINGER	UniProtKB/TrEMBL
PROSITE	NR_LBD	UniProtKB/TrEMBL
	NUCLEAR_REC_DBD_1	UniProtKB/TrEMBL
	NUCLEAR_REC_DBD_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000027145	RatGTEx
	ENSRNOG00000049584	RatGTEx
SMART	HOLI	UniProtKB/TrEMBL
	ZnF_C4	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
	SSF48508	UniProtKB/TrEMBL
UniProt	A0A8I6A803	ENTREZGENE, UniProtKB/TrEMBL
	F1LZZ3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Rora	RAR-related orphan receptor A	LOC103693129	nuclear receptor ROR-alpha-like	Data merged from RGD:9405052	737654	PROVISIONAL
2014-08-25	LOC103693129	nuclear receptor ROR-alpha-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2010-05-25	Rora	RAR-related orphan receptor A	Rora	RAR-related orphan receptor alpha	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Rora	RAR-related orphan receptor alpha	Rora_predicted	RAR-related orphan receptor alpha (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Rora_predicted	RAR-related orphan receptor alpha (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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