Rora (RAR-related orphan receptor alpha) - Rat Genome Database
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Gene: Rora (RAR-related orphan receptor alpha) Mus musculus
Analyze
Symbol: Rora
Name: RAR-related orphan receptor alpha
RGD ID: 1318176
MGI Page MGI
Description: Is expressed in several structures, including alimentary system; brain; genitourinary system; integumental system; and sensory organ. Orthologous to human RORA (RAR related orphan receptor A).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 9530021D13Rik; nmf267; Nr1; Nr1f1; nuclear receptor ROR-alpha; nuclear receptor RZR-alpha; nuclear receptor subfamily 1 group F member 1; RAR-related orphan receptor A; retinoid-related orphan receptor-alpha; ROR1; ROR2; ROR3; sg; staggerer; tmgc26
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39968,560,627 - 69,295,528 (+)NCBIGRCm39mm39
GRCm39 Ensembl968,561,068 - 69,295,528 (+)Ensembl
GRCm38968,653,404 - 69,388,246 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl968,653,786 - 69,388,246 (+)EnsemblGRCm38mm10GRCm38
MGSCv37968,501,609 - 69,226,838 (+)NCBIGRCm37mm9NCBIm37
MGSCv36968,452,966 - 69,178,195 (+)NCBImm8
Celera965,876,634 - 66,600,643 (+)NCBICelera
Cytogenetic Map9CNCBI
cM Map937.45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-anisomycin  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
25-hydroxycholesterol  (ISO)
3,4-dichloroaniline  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-phenoxybenzoic acid  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (EXP,ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bifenthrin  (ISO)
bisphenol A  (ISO)
cadmium dichloride  (EXP)
cannabidiol  (EXP)
carbon nanotube  (EXP,ISO)
chenodeoxycholic acid  (ISO)
chloroprene  (EXP,ISO)
choline  (EXP)
clofibrate  (EXP)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cortisol  (ISO)
cycloprothrin  (ISO)
cyclosporin A  (EXP)
cyhalothrin  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (EXP,ISO)
dibutyl phthalate  (EXP,ISO)
dichloromethane  (EXP)
diclofenac  (EXP)
difenoconazole  (ISO)
dioxygen  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
endrin  (ISO)
enilconazole  (EXP)
ethanol  (EXP,ISO)
flucythrinate  (ISO)
fluoranthene  (EXP)
flutamide  (ISO)
fluvalinate  (ISO)
folic acid  (EXP,ISO)
hexaconazole  (EXP)
Indeno[1,2,3-cd]pyrene  (EXP)
indole-3-methanol  (ISO)
isotretinoin  (ISO)
ketamine  (ISO)
L-methionine  (EXP)
leflunomide  (ISO)
lipopolysaccharide  (EXP)
melatonin  (EXP)
methapyrilene  (ISO)
methotrexate  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N-acetyl-L-cysteine  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (EXP)
phenobarbital  (EXP)
piperonyl butoxide  (ISO)
pirinixic acid  (ISO)
quercetin  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
Soman  (ISO)
styrene  (EXP)
tamoxifen  (EXP)
tert-butyl hydroperoxide  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
tetraconazole  (EXP)
thimerosal  (ISO)
trichostatin A  (ISO)
triflumizole  (EXP)
troglitazone  (EXP)
tunicamycin  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zinc dichloride  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
angiogenesis  (ISO)
cellular response to hypoxia  (ISO)
cellular response to interleukin-1  (IDA)
cellular response to sterol  (ISO)
cellular response to tumor necrosis factor  (IDA)
cerebellar granule cell precursor proliferation  (IMP)
cerebellar Purkinje cell differentiation  (IMP)
cGMP metabolic process  (IMP)
cholesterol homeostasis  (IMP)
circadian regulation of gene expression  (IDA)
circadian rhythm  (ISO)
intracellular receptor signaling pathway  (ISO)
multicellular organism development  (IEA)
muscle cell differentiation  (ISO)
negative regulation of fat cell differentiation  (IMP)
negative regulation of I-kappaB kinase/NF-kappaB signaling  (ISO)
negative regulation of inflammatory response  (IBA,ISO)
nitric oxide biosynthetic process  (IMP)
positive regulation of circadian rhythm  (IDA)
positive regulation of transcription by RNA polymerase II  (IDA,IGI,ISO)
positive regulation of transcription, DNA-templated  (IDA,ISO)
positive regulation of vascular endothelial growth factor production  (ISO)
regulation of circadian rhythm  (IMP)
regulation of glucose metabolic process  (IMP)
regulation of macrophage activation  (IMP)
regulation of smoothened signaling pathway  (IMP)
regulation of steroid metabolic process  (IMP)
regulation of transcription by RNA polymerase II  (IBA,IDA,IMP)
regulation of transcription, DNA-templated  (IDA,ISO)
rhythmic process  (IEA)
T-helper 17 cell differentiation  (IMP)
triglyceride homeostasis  (IMP,ISO)
xenobiotic metabolic process  (IMP)

Cellular Component
nucleoplasm  (TAS)
nucleus  (IBA,IDA,ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal brain interneuron morphology  (IAGP)
abnormal brain morphology  (IAGP)
abnormal cerebellar foliation  (IAGP)
abnormal cerebellar granule cell morphology  (IAGP)
abnormal cerebellar granule layer morphology  (IAGP)
abnormal cerebellar layer morphology  (IAGP)
abnormal cerebellar molecular layer  (IAGP)
abnormal cerebellar Purkinje cell layer  (IAGP)
abnormal cerebellum deep nucleus morphology  (IAGP)
abnormal cerebellum external granule cell layer morphology  (IAGP)
abnormal cerebellum morphology  (IAGP)
abnormal cochlear VIII nucleus morphology  (IAGP)
abnormal estrous cycle  (IAGP)
abnormal excitatory postsynaptic currents  (IAGP)
abnormal external female genitalia morphology  (IAGP)
abnormal female reproductive system physiology  (IAGP)
abnormal fertility/fecundity  (IAGP)
abnormal gait  (IAGP)
abnormal hormone level  (IAGP)
abnormal immune system organ morphology  (IAGP)
abnormal immune system physiology  (IAGP)
abnormal inferior olivary complex morphology  (IAGP)
abnormal limb posture  (IAGP)
abnormal lipid homeostasis  (IAGP)
abnormal lung compliance  (IAGP)
abnormal macrophage physiology  (IAGP)
abnormal maternal nurturing  (IAGP)
abnormal motor capabilities/coordination/movement  (IAGP)
abnormal motor learning  (IAGP)
abnormal nervous system physiology  (IAGP)
abnormal neuron proliferation  (IAGP)
abnormal olfaction  (IAGP)
abnormal olfactory bulb external plexiform layer morphology  (IAGP)
abnormal olfactory bulb glomerular layer morphology  (IAGP)
abnormal olfactory bulb granule cell layer morphology  (IAGP)
abnormal olfactory bulb granule cell morphology  (IAGP)
abnormal olfactory bulb internal plexiform layer morphology  (IAGP)
abnormal olfactory bulb layer morphology  (IAGP)
abnormal olfactory bulb mitral cell layer morphology  (IAGP)
abnormal olfactory bulb morphology  (IAGP)
abnormal olfactory bulb outer nerve layer morphology  (IAGP)
abnormal Purkinje cell dendrite morphology  (IAGP)
abnormal Purkinje cell differentiation  (IAGP)
abnormal Purkinje cell morphology  (IAGP)
abnormal radial glial cell morphology  (IAGP)
abnormal respiratory mucosa morphology  (IAGP)
abnormal sexual interaction  (IAGP)
abnormal spatial learning  (IAGP)
abnormal synaptic glutamate release  (IAGP)
abnormal vasoconstriction  (IAGP)
abnormal vasodilation  (IAGP)
absent cerebellar granule cells  (IAGP)
absent cerebellar granule layer  (IEA)
absent duvet hair  (IAGP)
ataxia  (IAGP)
atherosclerotic lesions  (IAGP)
decreased aspartic acid level  (IAGP)
decreased body size  (IAGP)
decreased cerebellar granule cell number  (IAGP)
decreased cerebellar granule cell precursor proliferation  (IAGP)
decreased circulating cholesterol level  (IAGP)
decreased circulating HDL cholesterol level  (IAGP)
decreased gamma-aminobutyric acid level  (IAGP)
decreased grip strength  (IAGP)
decreased mean systemic arterial blood pressure  (IAGP)
decreased Purkinje cell number  (IAGP)
decreased startle reflex  (IEA)
decreased taurine level  (IAGP)
delaminated Purkinje cell layer  (IAGP)
delayed estrous cycle  (IAGP)
ectopic cerebellar granule cells  (IAGP)
ectopic Purkinje cell  (IAGP)
hindlimb paralysis  (IAGP)
hypoactivity  (IAGP)
impaired balance  (IAGP)
impaired coordination  (IAGP)
impaired limb coordination  (IEA)
impaired righting response  (IEA)
increased angiogenesis  (IAGP)
increased IgE level  (IAGP)
increased interleukin-1 secretion  (IAGP)
increased noradrenaline level  (IAGP)
increased susceptibility to atherosclerosis  (IAGP)
lethality at weaning, incomplete penetrance  (IAGP)
limb grasping  (IAGP)
lung inflammation  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, incomplete penetrance  (IEA)
prolonged estrus  (IAGP)
prolonged metestrus  (IAGP)
Purkinje cell degeneration  (IAGP)
reduced cerebellar foliation  (IAGP)
reduced female fertility  (IAGP)
retarded hair growth  (IAGP)
small cerebellum  (IAGP)
small olfactory bulb  (IAGP)
sparse hair  (IAGP)
spleen atrophy  (IAGP)
thin cerebellar granule layer  (IAGP)
thin cerebellar molecular layer  (IAGP)
thymus atrophy  (IAGP)
tremors  (IAGP)
References

Additional References at PubMed
PMID:368650   PMID:466453   PMID:509213   PMID:641237   PMID:723931   PMID:1252920   PMID:1288897   PMID:1292478   PMID:1511513   PMID:1565842   PMID:1590727   PMID:1727430  
PMID:1804324   PMID:2077109   PMID:2123001   PMID:2230805   PMID:2231177   PMID:2280222   PMID:2293612   PMID:2355223   PMID:2901364   PMID:3619071   PMID:4009175   PMID:4020530  
PMID:4673255   PMID:6123371   PMID:6127146   PMID:6667376   PMID:6704753   PMID:6960362   PMID:7260600   PMID:7352029   PMID:7478307   PMID:7490103   PMID:7518067   PMID:7667406  
PMID:7673468   PMID:7708769   PMID:7838156   PMID:7838158   PMID:7842506   PMID:7926749   PMID:7935491   PMID:7942094   PMID:8013566   PMID:8132866   PMID:8230318   PMID:8297325  
PMID:8346298   PMID:8352721   PMID:8507983   PMID:8509510   PMID:8513552   PMID:8568922   PMID:8577876   PMID:8602221   PMID:8613747   PMID:8645318   PMID:8723764   PMID:8750880  
PMID:8758947   PMID:8774953   PMID:8788862   PMID:8798681   PMID:8814290   PMID:8832652   PMID:8833100   PMID:8848495   PMID:8861101   PMID:8884266   PMID:8905663   PMID:8915586  
PMID:8915827   PMID:8996814   PMID:9027398   PMID:9034896   PMID:9035249   PMID:9073511   PMID:9120059   PMID:9220474   PMID:9226375   PMID:9263582   PMID:9389662   PMID:9421144  
PMID:9441664   PMID:9510031   PMID:9514513   PMID:9520475   PMID:9530977   PMID:9582364   PMID:9590549   PMID:9813341   PMID:9851961   PMID:9852586   PMID:10321020   PMID:10349636  
PMID:10376525   PMID:10404252   PMID:10457598   PMID:10604831   PMID:10645972   PMID:10670457   PMID:10696797   PMID:10932186   PMID:11042159   PMID:11053433   PMID:11076861   PMID:11217851  
PMID:11248354   PMID:11335003   PMID:11489262   PMID:11529272   PMID:11739287   PMID:11850116   PMID:11879571   PMID:11964376   PMID:12019353   PMID:12466851   PMID:12477932   PMID:12663500  
PMID:12672557   PMID:12966220   PMID:13912552   PMID:14507778   PMID:14681479   PMID:14687547   PMID:14751813   PMID:14966198   PMID:14990870   PMID:15135064   PMID:15163631   PMID:15199055  
PMID:15312651   PMID:15322153   PMID:15337313   PMID:15342729   PMID:15351503   PMID:15489334   PMID:15618518   PMID:15753139   PMID:15778248   PMID:15790933   PMID:15821743   PMID:16141072  
PMID:16141073   PMID:16420440   PMID:16427031   PMID:16499884   PMID:16516881   PMID:16555296   PMID:16602821   PMID:16774995   PMID:16807193   PMID:16919269   PMID:16971476   PMID:16973978  
PMID:17110330   PMID:17205580   PMID:17215137   PMID:17218417   PMID:17360405   PMID:17409257   PMID:17476214   PMID:17545671   PMID:17666523   PMID:17953485   PMID:18005000   PMID:18055760  
PMID:18086663   PMID:18164222   PMID:18287559   PMID:18441015   PMID:18455884   PMID:18480159   PMID:18522874   PMID:18583162   PMID:18585065   PMID:18599325   PMID:18694395   PMID:18799693  
PMID:19014374   PMID:19039140   PMID:19050256   PMID:19088203   PMID:19150487   PMID:19217896   PMID:19324970   PMID:19357274   PMID:19362022   PMID:19450581   PMID:19554387   PMID:19645616  
PMID:19741118   PMID:19955433   PMID:19965867   PMID:20196782   PMID:20300063   PMID:20383124   PMID:20412781   PMID:20436479   PMID:20510365   PMID:20596079   PMID:20663205   PMID:20722722  
PMID:20980600   PMID:21050275   PMID:21192082   PMID:21267068   PMID:21279323   PMID:21307096   PMID:21317191   PMID:21431469   PMID:21525287   PMID:21540300   PMID:21558162   PMID:21628546  
PMID:21677750   PMID:21873635   PMID:21976517   PMID:21982598   PMID:22223133   PMID:22244086   PMID:22267218   PMID:22514301   PMID:22561605   PMID:22569553   PMID:22712074   PMID:22744720  
PMID:22753030   PMID:22981535   PMID:23172836   PMID:23239817   PMID:23454479   PMID:23658181   PMID:23719821   PMID:23723244   PMID:23744949   PMID:23812098   PMID:23831966   PMID:23851685  
PMID:23954132   PMID:24194600   PMID:24226095   PMID:24323357   PMID:24344271   PMID:24491816   PMID:24583012   PMID:24597775   PMID:24613091   PMID:24799694   PMID:24831725   PMID:24924609  
PMID:24952961   PMID:24982181   PMID:25035422   PMID:25088770   PMID:25143535   PMID:25182747   PMID:25424999   PMID:25446528   PMID:25560829   PMID:25635458   PMID:25761772   PMID:25804738  
PMID:25907855   PMID:25953430   PMID:25964370   PMID:26015436   PMID:26044300   PMID:26045547   PMID:26243880   PMID:26297811   PMID:26332085   PMID:26523868   PMID:26797926   PMID:26812621  
PMID:27022145   PMID:27068104   PMID:27183623   PMID:27184849   PMID:27469598   PMID:27626380   PMID:27788394   PMID:27825849   PMID:27862268   PMID:28228256   PMID:28264908   PMID:28332183  
PMID:28360114   PMID:28511797   PMID:28542916   PMID:28588446   PMID:28589929   PMID:28607111   PMID:28646017   PMID:28670633   PMID:28683306   PMID:28698385   PMID:28747429   PMID:28757615  
PMID:28774591   PMID:28783681   PMID:29024665   PMID:29040059   PMID:29040410   PMID:29224725   PMID:29440650   PMID:29500225   PMID:29526762   PMID:29673115   PMID:29679559   PMID:30343032  
PMID:30387679   PMID:30529950   PMID:30635555   PMID:30642949   PMID:30673513   PMID:30728500   PMID:30770814   PMID:30855276   PMID:30904385   PMID:30958896   PMID:31009101   PMID:31027995  
PMID:31071300   PMID:31121178   PMID:31340215   PMID:31409825   PMID:31409890   PMID:31442405   PMID:31537642   PMID:31578523   PMID:31636631   PMID:31676672   PMID:31705443   PMID:31816636  
PMID:31835092   PMID:32065580   PMID:32240850   PMID:32598934   PMID:32675279   PMID:33397953  


Genomics

Comparative Map Data
Rora
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39968,560,627 - 69,295,528 (+)NCBIGRCm39mm39
GRCm39 Ensembl968,561,068 - 69,295,528 (+)Ensembl
GRCm38968,653,404 - 69,388,246 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl968,653,786 - 69,388,246 (+)EnsemblGRCm38mm10GRCm38
MGSCv37968,501,609 - 69,226,838 (+)NCBIGRCm37mm9NCBIm37
MGSCv36968,452,966 - 69,178,195 (+)NCBImm8
Celera965,876,634 - 66,600,643 (+)NCBICelera
Cytogenetic Map9CNCBI
cM Map937.45NCBI
RORA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1560,488,284 - 61,229,302 (-)EnsemblGRCh38hg38GRCh38
GRCh381560,488,284 - 61,229,302 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371560,780,483 - 61,521,501 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361558,576,755 - 59,308,794 (-)NCBINCBI36hg18NCBI36
Build 341558,576,754 - 58,671,999NCBI
Celera1537,669,158 - 37,859,340 (-)NCBI
Cytogenetic Map15q22.2NCBI
HuRef1537,602,935 - 37,793,081 (-)NCBIHuRef
CHM1_11560,900,085 - 61,640,967 (-)NCBICHM1_1
Rora
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2869,301,635 - 70,034,741 (+)NCBI
Rnor_6.0 Ensembl875,516,904 - 75,607,212 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0875,515,886 - 75,616,477 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0879,195,918 - 79,934,499 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4873,052,282 - 73,817,764 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1873,744,425 - 73,837,420 (+)NCBI
Celera871,690,522 - 71,789,466 (-)NCBICelera
Cytogenetic Map8q24NCBI
Rora
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545014,262,190 - 14,425,233 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545014,262,199 - 14,434,611 (+)NCBIChiLan1.0ChiLan1.0
RORA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11557,763,345 - 57,901,854 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1557,771,735 - 57,980,460 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01539,461,553 - 40,200,118 (-)NCBIMhudiblu_PPA_v0panPan3
RORA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3025,325,275 - 26,026,623 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.13025,315,974 - 26,026,708 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rora
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647121,402,056 - 21,567,908 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RORA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1110,719,190 - 111,477,703 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11110,719,004 - 111,482,807 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21123,140,609 - 123,247,974 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RORA
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12622,263,889 - 23,002,224 (+)NCBI
ChlSab1.1 Ensembl2622,812,445 - 22,993,021 (+)Ensembl
Rora
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478111,014,185 - 11,688,558 (+)NCBI

Position Markers
AW743275  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38968,663,822 - 68,664,066UniSTSGRCm38
MGSCv37968,511,629 - 68,511,873UniSTSGRCm37
Celera965,886,372 - 65,886,616UniSTS
Cytogenetic Map9CUniSTS
cM Map936.0UniSTS
Whitehead/MRC_RH12787.82UniSTS
D45910  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38969,379,155 - 69,379,278UniSTSGRCm38
MGSCv37969,226,962 - 69,227,085UniSTSGRCm37
Celera966,600,767 - 66,600,890UniSTS
Cytogenetic Map9CUniSTS
cM Map936.0UniSTS
Whitehead/MRC_RH9668.26UniSTS
MTH864  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38968,846,588 - 68,846,707UniSTSGRCm38
MGSCv37968,694,395 - 68,694,514UniSTSGRCm37
Celera966,069,600 - 66,069,717UniSTS
Cytogenetic Map9CUniSTS
cM Map936.0UniSTS
Whitehead_YAC9 UniSTS
D9Mit158  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38968,882,178 - 68,882,268UniSTSGRCm38
MGSCv37968,729,985 - 68,730,075UniSTSGRCm37
Celera966,104,959 - 66,105,049UniSTS
Cytogenetic Map9CUniSTS
cM Map938.0UniSTS
Whitehead Genetic936.1UniSTS
Whitehead_YAC9 UniSTS
D9Mit165  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38968,681,869 - 68,681,990UniSTSGRCm38
MGSCv37968,529,676 - 68,529,797UniSTSGRCm37
Celera965,904,395 - 65,904,514UniSTS
Cytogenetic Map9CUniSTS
cM Map938.0UniSTS
Whitehead Genetic936.1UniSTS
Whitehead_YAC9 UniSTS
D9Mit260  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38968,828,924 - 68,829,021UniSTSGRCm38
MGSCv37968,676,731 - 68,676,828UniSTSGRCm37
Celera966,051,716 - 66,051,821UniSTS
Cytogenetic Map9CUniSTS
cM Map938.0UniSTS
Whitehead Genetic936.1UniSTS
Whitehead/MRC_RH9661.86UniSTS
Whitehead_YAC9 UniSTS
D9Mit289  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38969,360,465 - 69,360,575UniSTSGRCm38
MGSCv37969,208,272 - 69,208,382UniSTSGRCm37
Celera966,582,131 - 66,582,241UniSTS
Cytogenetic Map9CUniSTS
cM Map938.0UniSTS
Whitehead Genetic936.1UniSTS
Whitehead/MRC_RH9674.16UniSTS
Whitehead_YAC9 UniSTS
D9Dcr8  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38968,828,916 - 68,829,019UniSTSGRCm38
MGSCv37968,676,723 - 68,676,826UniSTSGRCm37
Celera966,051,708 - 66,051,819UniSTS
Cytogenetic Map9CUniSTS
cM Map9 UniSTS
Rora  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37969,226,644 - 69,226,777UniSTSGRCm37
Celera966,600,449 - 66,600,582UniSTS
Cytogenetic Map9CUniSTS
cM Map936.0UniSTS
cM Map936.0UniSTS
UniSTS:236179  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38969,363,695 - 69,363,973UniSTSGRCm38
MGSCv37969,211,502 - 69,211,780UniSTSGRCm37
Celera966,585,361 - 66,585,639UniSTS
Cytogenetic Map9CUniSTS
cM Map936.0UniSTS
G64932  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38968,905,757 - 68,906,265UniSTSGRCm38
MGSCv37968,753,564 - 68,754,072UniSTSGRCm37
Celera966,128,826 - 66,129,334UniSTS
Cytogenetic Map9CUniSTS
cM Map936.0UniSTS
Rora  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38969,378,837 - 69,378,970UniSTSGRCm38
MGSCv37969,226,644 - 69,226,777UniSTSGRCm37
Celera966,600,449 - 66,600,582UniSTS
Cytogenetic Map9CUniSTS
cM Map936.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208563Bmiq8_mbody mass index QTL 8 (mouse)92500000069000000Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93406754473531973Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93512317869123299Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93512317869123299Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93512317869123299Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93739490198819654Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93791224471912244Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93819229172192291Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93819229172192291Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93819229172192291Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93949260173492601Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94050829874700643Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94089776474897921Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94357343177573577Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94357343177573577Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94452089278520980Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94892377482923895Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94892377482923895Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49541121101528921Mouse
14746993Manh66_mmandible shape 66 (mouse)94990676683906766Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95024403884244166Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95212317899910428Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95465267888652678Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95653182690531973Mouse
1301549Bbaa9_mB.burgdorferi-associated arthritis 9 (mouse)Not determined95789776471574472Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95789776486239920Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95911710593117252Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95911710593117252Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95946266493462846Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95946266493462846Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95946266493462846Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96224248596242599Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96513390995640755Mouse
1301290Smgd1_msubmucosal gland distribution 1 (mouse)Not determined96592377486695914Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966207024100207122Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967124167101124167Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968897510102897652Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968897510102897652Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969239845103239920Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96936046598819654Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4123
Count of miRNA genes:978
Interacting mature miRNAs:1459
Transcripts:ENSMUST00000034766, ENSMUST00000113624, ENSMUST00000132355, ENSMUST00000140351, ENSMUST00000143507, ENSMUST00000174296
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001289916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001289917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB127583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC000399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC002109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC102602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC127262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC155931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC160977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02138887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW743275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT009708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT030683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT030730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT867967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S82720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U53228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y08640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z82994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000034766   ⟹   ENSMUSP00000034766
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl968,653,786 - 69,388,246 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113624   ⟹   ENSMUSP00000109254
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl969,289,682 - 69,379,809 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132355
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl969,195,541 - 69,250,834 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140351
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl968,653,786 - 68,664,967 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143507
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl968,655,303 - 68,664,180 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174296   ⟹   ENSMUSP00000134291
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl968,653,891 - 69,364,494 (+)Ensembl
RefSeq Acc Id: NM_001289916   ⟹   NP_001276845
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39969,197,123 - 69,295,528 (+)NCBI
GRCm38969,289,841 - 69,388,246 (+)NCBI
Celera965,876,618 - 66,609,859 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001289917   ⟹   NP_001276846
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39968,561,068 - 68,572,249 (+)NCBI
GRCm38968,653,786 - 68,664,967 (+)NCBI
Celera965,876,618 - 66,609,859 (+)NCBI
Sequence:
RefSeq Acc Id: NM_013646   ⟹   NP_038674
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39968,561,068 - 69,295,528 (+)NCBI
GRCm38968,653,786 - 69,388,246 (+)NCBI
MGSCv37968,501,609 - 69,226,838 (+)RGD
Celera965,876,618 - 66,609,859 (+)NCBI
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006510877   ⟹   XP_006510940
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39969,249,533 - 69,295,528 (+)NCBI
GRCm38969,342,236 - 69,388,246 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006510878   ⟹   XP_006510941
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39969,196,343 - 69,295,528 (+)NCBI
GRCm38969,289,010 - 69,388,246 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006510880   ⟹   XP_006510943
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39969,195,285 - 69,295,528 (+)NCBI
GRCm38969,288,418 - 69,388,246 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011242682   ⟹   XP_011240984
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39968,560,683 - 68,609,057 (+)NCBI
GRCm38968,653,404 - 68,701,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244146   ⟹   XP_030100006
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39968,560,683 - 69,295,528 (+)NCBI
GRCm38969,196,078 - 69,388,246 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244147   ⟹   XP_030100007
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39969,197,422 - 69,295,528 (+)NCBI
GRCm38969,290,134 - 69,388,246 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036154733   ⟹   XP_036010626
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39968,560,627 - 69,295,528 (+)NCBI
RefSeq Acc Id: XM_036154734   ⟹   XP_036010627
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39969,196,939 - 69,295,528 (+)NCBI
RefSeq Acc Id: XM_036154736   ⟹   XP_036010629
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39969,209,477 - 69,295,528 (+)NCBI
RefSeq Acc Id: XM_036154737   ⟹   XP_036010630
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39969,209,474 - 69,295,528 (+)NCBI
RefSeq Acc Id: XR_004935350
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39968,560,683 - 68,572,250 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_038674   ⟸   NM_013646
- Peptide Label: isoform 1
- UniProtKB: P51448 (UniProtKB/Swiss-Prot),   Q8C3F5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006510943   ⟸   XM_006510880
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006510941   ⟸   XM_006510878
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006510940   ⟸   XM_006510877
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001276846   ⟸   NM_001289917
- Peptide Label: isoform 3
- UniProtKB: Q8C3F5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001276845   ⟸   NM_001289916
- Peptide Label: isoform 2
- UniProtKB: P51448 (UniProtKB/Swiss-Prot),   Q3U1P4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011240984   ⟸   XM_011242682
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_030100006   ⟸   XM_030244146
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030100007   ⟸   XM_030244147
- Peptide Label: isoform X6
RefSeq Acc Id: ENSMUSP00000109254   ⟸   ENSMUST00000113624
RefSeq Acc Id: ENSMUSP00000034766   ⟸   ENSMUST00000034766
RefSeq Acc Id: ENSMUSP00000134291   ⟸   ENSMUST00000174296
RefSeq Acc Id: XP_036010626   ⟸   XM_036154733
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036010627   ⟸   XM_036154734
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036010630   ⟸   XM_036154737
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036010629   ⟸   XM_036154736
- Peptide Label: isoform X6
Protein Domains
NR LBD   Nuclear receptor

Promoters
RGD ID:6845054
Promoter ID:MM_KWN:57934
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell
Transcripts:OTTMUST00000055460,   OTTMUST00000055479
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36968,501,101 - 68,501,601 (+)MPROMDB
RGD ID:6845055
Promoter ID:MM_KWN:57939
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:OTTMUST00000055481
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36969,042,926 - 69,043,732 (+)MPROMDB
RGD ID:6845053
Promoter ID:MM_KWN:57941
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4
Transcripts:OTTMUST00000055461
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36969,137,409 - 69,137,909 (+)MPROMDB
RGD ID:6844107
Promoter ID:MM_KWN:57943
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:UC009QNB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36969,227,061 - 69,233,137 (+)MPROMDB
RGD ID:8670062
Promoter ID:EPDNEW_M13062
Type:single initiation site
Name:Rora_2
Description:Mus musculus RAR-related orphan receptor alpha , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13063  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38969,266,748 - 69,266,808EPDNEW
RGD ID:8670064
Promoter ID:EPDNEW_M13063
Type:initiation region
Name:Rora_1
Description:Mus musculus RAR-related orphan receptor alpha , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13062  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38969,289,919 - 69,289,979EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104661 AgrOrtholog
Ensembl Genes ENSMUSG00000032238 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000034766 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109254 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000134291 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034766 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113624 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000140351 ENTREZGENE
  ENSMUST00000174296 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NHR-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NR_DBD_ROR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ROR_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19883 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:104661 ENTREZGENE
NCBI Gene 19883 ENTREZGENE
Pfam Hormone_recep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB RORA RGD
PhenoGen Rora PhenoGen
PRINTS RORNUCRECPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOLI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48508 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt G3UZ02_MOUSE UniProtKB/TrEMBL
  P51448 ENTREZGENE
  Q3U1P4 ENTREZGENE, UniProtKB/TrEMBL
  Q8BRL5_MOUSE UniProtKB/TrEMBL
  Q8C3F5 ENTREZGENE, UniProtKB/TrEMBL
  RORA_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary P70283 UniProtKB/Swiss-Prot
  P97741 UniProtKB/Swiss-Prot
  P97773 UniProtKB/Swiss-Prot
  Q923G1 UniProtKB/Swiss-Prot