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Pathways
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EUKARYOTIC RNA POLYMERASE TRANSCRIPTION PATHWAY (PW:0001275)

View Ontology Report

Description
The three eukaryotic RNA polymerases (RNAPs) - Pol I, II and III, transcribe different sets of genes and require distinct sets of factors to assemble a specific initiation complex which recruits them on gene promoters. The multi-subunit enzymes are composed of 14 (RNAPI), 12 (RNAPII) and 17 (RNAPIII) subunits of which some are shared and others are unique, yet converging on an overall similar structural topology. Complexes specific to each of the three systems share the universal transcription

Pathway Diagram:

Elsevier Inc. spliceosome pathway 3'-end pre-mRNA processing pathway 5'-end pre-mRNA capping pathway mRNA maturation pathway pre-mRNA transcription rRNA maturation pathway tRNA maturation pathway RNA polymerase III transcription pathway ---> pre-rRNA transcription RNA polymerase II transcription pathway ---> pre-mRNA transcription RNA polymerase I transcription pathway RNA polymerase II transcription pathway chromatin modification/remodeling pathway ---> RNA polymerase II transcription pathway chromatin modification/remodeling pathway RNA polymerase III transcription pathway chromatin modification/remodeling pathway ---> RNA polymerase III transcription pathway chromatin modification/remodeling pathway ---> RNA polymerase I transcription pathway RNA polymerase II transcription pathway ---> ncRNA transcription pre-rRNA transcription pre-tRNA transcription RNA polymerase I transcription pathway ---> pre-rRNA transcription RNA polymerase III transcription pathway ---> pre-tRNA transcription RNA polymerase III transcription pathway ---> small ncRNA transcription small ncRNA transcription ncRNA transcription
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Genes in Pathway:
show annotations for term's descendants           Sort by:
3'-end pre-mRNA processing pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 3:90,213,461...90,217,165
Ensembl chr 3:90,213,465...90,217,538 		JBrowse link
G Cpsf1 cleavage and polyadenylation specific factor 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 7:110,200,078...110,210,644
Ensembl chr 7:110,199,066...110,210,644 		JBrowse link
G Cpsf2 cleavage and polyadenylation specific factor 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 6:126,885,417...126,917,634
Ensembl chr 6:126,885,476...126,917,632 		JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 6:46,564,855...46,592,776
Ensembl chr 6:46,564,735...46,594,136 		JBrowse link
G Cpsf4 cleavage and polyadenylation specific factor 4 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr12:14,543,536...14,559,350
Ensembl chr12:14,543,338...14,559,350 		JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 7:54,798,452...54,887,711
Ensembl chr 7:54,842,490...54,873,998 		JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 1:216,592,745...216,616,860
Ensembl chr 1:216,592,463...216,616,855 		JBrowse link
G Cstf1 cleavage stimulation factor subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 3:181,562,953...181,574,727
Ensembl chr 3:181,562,955...181,574,727 		JBrowse link
G Cstf2 cleavage stimulation factor subunit 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr  X:101,546,809...101,572,760
Ensembl chr  X:101,546,819...101,572,764 		JBrowse link
G Cstf2t cleavage stimulation factor subunit 2, tau variant ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 1:238,366,042...238,369,608
Ensembl chr 1:238,365,912...238,369,749 		JBrowse link
G Cstf3 cleavage stimulation factor subunit 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 3:111,421,291...111,492,539
Ensembl chr 3:111,421,234...111,497,046 		JBrowse link
G Dxo decapping exoribonuclease ISO RGD PMID:21957020 RGD:9681741 NCBI chr20:3,997,953...4,000,115
Ensembl chr20:3,997,955...4,000,037 		JBrowse link
G Fip1l1 factor interacting with PAPOLA and CPSF1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr14:33,969,341...34,030,871
Ensembl chr14:33,971,914...34,029,753 		JBrowse link
G Nudt21 nudix hydrolase 21 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr19:10,980,797...10,996,903
Ensembl chr19:10,980,158...10,999,754 		JBrowse link
G Pabpn1 poly(A) binding protein, nuclear 1 ISO RGD PMID:24243805 RGD:9681742 NCBI chr15:32,337,955...32,342,700
Ensembl chr15:32,338,089...32,342,691 		JBrowse link
G Papola poly (A) polymerase alpha ISO RGD PMID:24243805 RGD:9681742 NCBI chr 6:130,446,236...130,499,371
Ensembl chr 6:130,446,797...130,499,336 		JBrowse link
G Papolb poly(A) polymerase beta ISO RGD PMID:24243805 RGD:9681742 NCBI chr12:17,157,757...17,160,103
Ensembl chr12:17,155,435...17,166,620 		JBrowse link
G Papolg poly(A) polymerase gamma ISO RGD PMID:24243805 RGD:9681742 NCBI chr14:102,028,842...102,062,155
Ensembl chr14:102,028,842...102,062,155 		JBrowse link
G Pcf11 PCF11 cleavage and polyadenylation factor subunit ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 1:156,109,724...156,136,950
Ensembl chr 1:156,109,724...156,136,435 		JBrowse link
G Sympk symplekin scaffold protein ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 1:87,800,416...87,828,727
Ensembl chr 1:87,799,853...87,828,727 		JBrowse link
G Wdr33 WD repeat domain 33 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr18:23,706,708...23,812,985
Ensembl chr18:23,706,602...23,809,708 		JBrowse link
G Xrn2 5'-3' exoribonuclease 2 ISO RGD PMID:21957020 RGD:9681741 NCBI chr 3:154,888,558...154,962,519
Ensembl chr 3:154,890,061...154,962,486 		JBrowse link
5'-end pre-mRNA capping pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ncbp1 nuclear cap binding protein subunit 1 ISO RGD PMID:24354960 RGD:9684851 NCBI chr 5:65,211,632...65,244,532
Ensembl chr 5:65,211,358...65,244,665 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 ISO RGD PMID:24354960 RGD:9684851 NCBI chr11:82,326,002...82,334,839
Ensembl chr11:82,322,716...82,335,116 		JBrowse link
G Ramac RNA guanine-7 methyltransferase activating subunit ISO RGD PMID:24354960 RGD:9684851 NCBI chr 1:145,117,752...145,123,640
Ensembl chr 1:145,117,736...145,124,256 		JBrowse link
G Rngtt RNA guanylyltransferase and 5'-phosphatase ISO RGD PMID:24354960 RGD:9684851 NCBI chr 5:52,503,335...52,709,604
Ensembl chr 5:52,503,313...52,709,597 		JBrowse link
G Rnmt RNA (guanine-7-) methyltransferase ISO RGD PMID:24354960 RGD:9684851 NCBI chr18:64,156,067...64,179,601
Ensembl chr18:64,156,154...64,179,500 		JBrowse link
RNA polymerase I transcription pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cavin1 caveolae associated protein 1 ISO RGD PMID:23092677 RGD:9588249 NCBI chr10:86,384,401...86,398,240
Ensembl chr10:86,384,401...86,396,383 		JBrowse link
G Cdc73 cell division cycle 73 ISO RGD PMID:20060942 RGD:9588246 NCBI chr13:57,897,924...58,000,031
Ensembl chr13:57,883,983...57,999,978 		JBrowse link
G Crebbp CREB binding lysine acetyltransferase ISO RGD PMID:24022641 RGD:9588250 NCBI chr10:11,842,307...11,968,266
Ensembl chr10:11,822,620...11,968,266 		JBrowse link
G Ctr9 CTR9 component of Paf1/RNA polymerase II complex ISO RGD PMID:20060942 RGD:9588246 NCBI chr 1:174,571,952...174,601,974
Ensembl chr 1:174,571,928...174,602,130 		JBrowse link
G Leo1 LEO1 component of Paf1/RNA polymerase II complex ISO RGD PMID:20060942 RGD:9588246 NCBI chr 8:85,080,036...85,104,471
Ensembl chr 8:85,079,996...85,105,094 		JBrowse link
G Ncl nucleolin ISO RGD PMID:21893173 PMID:25225127 RGD:9588244, RGD:9588251 NCBI chr 9:94,447,559...94,456,083
Ensembl chr 9:94,446,682...94,456,083 		JBrowse link
G Paf1 PAF1 component of Paf1/RNA polymerase II complex ISO RGD PMID:20060942 RGD:9588246 NCBI chr 1:92,811,197...92,816,775
Ensembl chr 1:92,798,237...92,816,779 		JBrowse link
G Polr1a RNA polymerase I subunit A ISO RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr 4:105,508,305...105,572,272
Ensembl chr 4:105,508,248...105,574,036 		JBrowse link
G Polr1b RNA polymerase I subunit B ISO RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr 3:136,787,130...136,811,608
Ensembl chr 3:136,787,107...136,811,607 		JBrowse link
G Polr1c RNA polymerase I and III subunit C ISO RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr 9:22,233,318...22,237,430
Ensembl chr 9:22,233,305...22,237,428 		JBrowse link
G Polr1d RNA polymerase I and III subunit D ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr12:13,084,505...13,118,069
Ensembl chr12:13,084,512...13,095,627 		JBrowse link
G Polr1e RNA polymerase I subunit E ISO RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr 5:64,075,123...64,090,900
Ensembl chr 5:64,075,122...64,091,039 		JBrowse link
G Polr1f RNA polymerase I subunit F ISO RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr 6:55,780,706...55,797,935
Ensembl chr 6:55,780,706...55,797,935 		JBrowse link
G Polr1g RNA polymerase I subunit G ISO RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr 1:88,135,493...88,138,769
Ensembl chr 1:88,135,493...88,138,769 		JBrowse link
G Polr1h RNA polymerase I subunit H ISO RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr20:1,600,170...1,604,088
Ensembl chr20:1,595,945...1,604,088 		JBrowse link
G Polr2e RNA polymerase II, I and III subunit E ISO RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr 7:10,317,332...10,321,280
Ensembl chr 7:10,317,389...10,321,276 		JBrowse link
G Polr2f RNA polymerase II, I and III subunit F ISO RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr 7:112,592,977...112,604,681
Ensembl chr 7:112,593,027...112,604,666 		JBrowse link
G Polr2h RNA polymerase II, I and III subunit H ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr11:93,696,423...93,701,902
Ensembl chr10:105,353,444...105,354,241
Ensembl chr11:105,353,444...105,354,241 		JBrowse link
G Polr2k RNA polymerase II, I and III subunit K ISO RGD PMID:21893173 PMID:22365827 RGD:9588244, RGD:9588262 NCBI chr 7:69,241,233...69,244,579
Ensembl chr 7:69,232,179...69,244,578 		JBrowse link
G Polr2l RNA polymerase II, I and III subunit L ISO RGD PMID:21893173 PMID:22365827 RGD:9588244 RGD:9588262 NCBI chr 1:205,999,607...206,001,615
Ensembl chr19:8,341,868...8,342,071 		JBrowse link
G Rrn3 RNA polymerase I transcription factor RRN3 ISO RGD PMID:22960599 PMID:21893173 RGD:9588243, RGD:9588244 NCBI chr10:2,637,016...2,672,338
Ensembl chr10:2,637,016...2,672,330 		JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) ISO RGD PMID:20060942 RGD:9588246 NCBI chr 3:127,113,171...127,172,761
Ensembl chr 3:127,113,163...127,172,761 		JBrowse link
G Sirt1 sirtuin 1 ISO RGD PMID:24022641 RGD:9588250 NCBI chr20:25,305,953...25,328,000
Ensembl chr20:25,305,476...25,328,000 		JBrowse link
G Sirt7 sirtuin 7 ISO RGD PMID:24022641 RGD:9588250 NCBI chr10:106,394,802...106,401,627
Ensembl chr10:106,394,802...106,401,498 		JBrowse link
G Skic8 SKI8 subunit of superkiller complex ISO RGD PMID:20060942 RGD:9588246 NCBI chr 8:63,999,669...64,016,959
Ensembl chr 8:63,999,671...64,016,846 		JBrowse link
G Ssrp1 structure specific recognition protein 1 ISO RGD PMID:21454601 RGD:9588245 NCBI chr 3:90,531,024...90,541,132
Ensembl chr 3:90,530,829...90,541,129 		JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit ISO RGD PMID:21454601 RGD:9588245 NCBI chr15:27,341,196...27,378,314
Ensembl chr15:27,341,196...27,378,314 		JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit ISO RGD PMID:21893173 RGD:9588244 NCBI chr10:73,036,560...73,042,821
Ensembl chr10:73,036,343...73,043,088 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit ISO RGD PMID:21893173 RGD:9588244 NCBI chr 1:92,714,276...92,745,489
Ensembl chr 1:92,714,281...92,744,445 		JBrowse link
G Taf12 TATA-box binding protein associated factor 12 ISO RGD PMID:22960599 PMID:21893173 RGD:9588243, RGD:9588244 NCBI chr 5:149,756,826...149,772,886
Ensembl chr 5:149,753,105...149,774,315 		JBrowse link
G Taf1a TATA-box binding protein associated factor, RNA polymerase I subunit A ISO RGD PMID:22960599 PMID:21893173 RGD:9588243, RGD:9588244 NCBI chr13:97,543,772...97,579,742
Ensembl chr13:97,560,820...97,579,737 		JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B ISO RGD PMID:22960599 PMID:21893173 RGD:9588243, RGD:9588244 NCBI chr 6:46,845,571...46,923,209
Ensembl chr 6:46,846,029...46,923,209 		JBrowse link
G Taf1c TATA-box binding protein associated factor, RNA polymerase 1 subunit C ISO RGD PMID:22960599 PMID:21893173 RGD:9588243, RGD:9588244 NCBI chr19:64,561,079...64,567,599
Ensembl chr19:64,560,562...64,567,599 		JBrowse link
G Taf1d TATA-box binding protein associated factor, RNA polymerase I subunit D ISO RGD PMID:22960599 PMID:21893173 RGD:9588243, RGD:9588244 NCBI chr 8:20,427,894...20,438,046
Ensembl chr 8:20,427,954...20,434,556 		JBrowse link
G Tbp TATA box binding protein ISO RGD PMID:22960599 PMID:21893173 RGD:9588243, RGD:9588244 NCBI chr 1:65,136,420...65,153,515
Ensembl chr 1:65,136,448...65,190,899 		JBrowse link
G Ttf1 transcription termination factor 1 ISO RGD PMID:23092677 RGD:9588249 NCBI chr 3:32,782,544...32,807,202
Ensembl chr 3:32,782,308...32,807,201 		JBrowse link
G Ubtf upstream binding transcription factor ISO RGD PMID:22960599 PMID:21893173 RGD:9588243, RGD:9588244 NCBI chr10:87,758,346...87,775,377
Ensembl chr10:87,758,346...87,773,088 		JBrowse link
RNA polymerase II transcription elongation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aff1 ALF transcription elongation factor 1 ISO RGD PMID:22895430 RGD:9681740 NCBI chr14:6,165,864...6,328,848
Ensembl chr14:6,169,562...6,328,879 		JBrowse link
G Aff4 ALF transcription elongation factor 4 ISO RGD PMID:22895430 RGD:9681740 NCBI chr10:37,998,319...38,080,580
Ensembl chr10:37,999,579...38,080,580 		JBrowse link
G Ccnk cyclin K ISO RGD PMID:24050178 RGD:9681735 NCBI chr 6:132,854,428...132,877,604
Ensembl chr 6:132,854,700...132,877,602 		JBrowse link
G Ccnt1 cyclin T1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 7:131,566,176...131,596,988
Ensembl chr 7:131,566,176...131,596,938 		JBrowse link
G Ccnt2 cyclin T2 ISO RGD PMID:24050178 RGD:9681735 NCBI chr13:41,804,007...41,845,641
Ensembl chr13:41,804,046...41,844,488 		JBrowse link
G Cdc73 cell division cycle 73 ISO RGD PMID:20060942 RGD:9588246 NCBI chr13:57,897,924...58,000,031
Ensembl chr13:57,883,983...57,999,978 		JBrowse link
G Cdk9 cyclin-dependent kinase 9 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 3:36,394,168...36,399,016
Ensembl chr 3:36,394,169...36,399,528 		JBrowse link
G Ctr9 CTR9 component of Paf1/RNA polymerase II complex ISO RGD PMID:20060942 RGD:9588246 NCBI chr 1:174,571,952...174,601,974
Ensembl chr 1:174,571,928...174,602,130 		JBrowse link
G Eaf1 ELL associated factor 1 ISO RGD PMID:22895430 RGD:9681740 NCBI chr16:6,704,727...6,719,476
Ensembl chr16:6,704,727...6,719,476 		JBrowse link
G Eaf2 ELL associated factor 2 ISO RGD PMID:22895430 RGD:9681740 NCBI chr11:77,465,585...77,509,993
Ensembl chr11:77,406,020...77,509,993 		JBrowse link
G Ell elongation factor for RNA polymerase II ISO RGD PMID:22895430 RGD:9681740 NCBI chr16:18,877,751...18,925,449
Ensembl chr16:18,877,751...18,925,076 		JBrowse link
G Ell2 elongation factor for RNA polymerase II 2 ISO RGD PMID:22895430 RGD:9681740 NCBI chr 2:6,910,446...6,990,654
Ensembl chr 2:6,921,771...7,016,199 		JBrowse link
G Ell3 elongation factor for RNA polymerase II 3 ISO RGD PMID:22895430 RGD:9681740 NCBI chr 3:128,866,755...128,870,896
Ensembl chr 3:128,864,777...128,870,852 		JBrowse link
G Gtf2f1 general transcription factor IIF subunit 1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 9:1,931,033...1,940,197
Ensembl chr 9:1,930,055...1,940,197 		JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 ISO RGD PMID:24050178 RGD:9681735 NCBI chr15:57,615,361...57,736,477
Ensembl chr15:57,614,841...57,736,516 		JBrowse link
G Leo1 LEO1 component of Paf1/RNA polymerase II complex ISO RGD PMID:20060942 RGD:9588246 NCBI chr 8:85,080,036...85,104,471
Ensembl chr 8:85,079,996...85,105,094 		JBrowse link
G Mllt1 MLLT1, super elongation complex subunit ISO RGD PMID:22895430 RGD:9681740 NCBI chr 9:1,818,204...1,863,091
Ensembl chr 9:1,818,204...1,863,089 		JBrowse link
G Mllt3 MLLT3, super elongation complex subunit ISO RGD PMID:22895430 RGD:9681740 NCBI chr 5:107,305,008...107,561,352
Ensembl chr 5:107,284,766...107,561,352 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 ISO RGD PMID:24354960 RGD:9684851 NCBI chr 5:65,211,632...65,244,532
Ensembl chr 5:65,211,358...65,244,665 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 ISO RGD PMID:24354960 RGD:9684851 NCBI chr11:82,326,002...82,334,839
Ensembl chr11:82,322,716...82,335,116 		JBrowse link
G Nelfa negative elongation factor complex member A ISO RGD PMID:24050178 RGD:9681735 NCBI chr14:81,033,470...81,057,546
Ensembl chr14:81,033,514...81,058,719 		JBrowse link
G Nelfb negative elongation factor complex member B ISO RGD PMID:24050178 RGD:9681735 NCBI chr 3:28,409,045...28,425,564
Ensembl chr 3:28,409,050...28,425,564 		JBrowse link
G Nelfcd negative elongation factor complex member C/D ISO RGD PMID:24050178 RGD:9681735 NCBI chr 3:183,631,968...183,643,088
Ensembl chr 3:183,631,968...183,643,088 		JBrowse link
G Nelfe negative elongation factor complex member E ISO RGD PMID:24050178 RGD:9681735 NCBI chr20:3,981,259...3,987,016
Ensembl chr20:3,981,261...3,986,922 		JBrowse link
G Paf1 PAF1 component of Paf1/RNA polymerase II complex ISO RGD PMID:20060942 RGD:9588246 NCBI chr 1:92,811,197...92,816,775
Ensembl chr 1:92,798,237...92,816,779 		JBrowse link
G Rngtt RNA guanylyltransferase and 5'-phosphatase ISO RGD PMID:24354960 RGD:9684851 NCBI chr 5:52,503,335...52,709,604
Ensembl chr 5:52,503,313...52,709,597 		JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) ISO RGD PMID:20060942 RGD:9588246 NCBI chr 3:127,113,171...127,172,761
Ensembl chr 3:127,113,163...127,172,761 		JBrowse link
G Skic8 SKI8 subunit of superkiller complex ISO RGD PMID:20060942 RGD:9588246 NCBI chr 8:63,999,669...64,016,959
Ensembl chr 8:63,999,671...64,016,846 		JBrowse link
G Ssrp1 structure specific recognition protein 1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 3:90,531,024...90,541,132
Ensembl chr 3:90,530,829...90,541,129 		JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit ISO RGD PMID:24050178 RGD:9681735 NCBI chr15:27,341,196...27,378,314
Ensembl chr15:27,341,196...27,378,314 		JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit ISO RGD PMID:24050178 RGD:9681735 NCBI chr10:73,036,560...73,042,821
Ensembl chr10:73,036,343...73,043,088 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit ISO RGD PMID:24050178 RGD:9681735 NCBI chr 1:92,714,276...92,745,489
Ensembl chr 1:92,714,281...92,744,445 		JBrowse link
G Tcea1 transcription elongation factor A1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 5:19,414,351...19,466,629
Ensembl chr15:12,831,339...12,834,156
Ensembl chr 5:12,831,339...12,834,156 		JBrowse link
G Tcea2 transcription elongation factor A2 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 3:189,173,756...189,181,633
Ensembl chr 3:189,165,603...189,182,540 		JBrowse link
G Tcea3 transcription elongation factor A3 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 5:153,760,401...153,792,934
Ensembl chr 5:153,760,407...153,792,930 		JBrowse link
RNA polymerase II transcription initiation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn7 ataxin 7 ISO RGD PMID:22426530 RGD:9681728 NCBI chr15:13,547,859...13,693,311
Ensembl chr15:13,547,862...13,693,526 		JBrowse link
G Atxn7l3 ataxin 7-like 3 ISO RGD PMID:22426530 RGD:9681728 NCBI chr10:87,742,993...87,750,247
Ensembl chr10:87,744,369...87,750,245 		JBrowse link
G Ccnh cyclin H ISO RGD PMID:21592869 RGD:9681726 NCBI chr 2:17,570,449...17,591,078
Ensembl chr 2:17,570,263...17,614,860 		JBrowse link
G Cdk7 cyclin-dependent kinase 7 ISO RGD PMID:21592869 RGD:9681726 NCBI chr 2:33,574,623...33,599,485
Ensembl chr 2:33,574,623...33,599,485 		JBrowse link
G Dr1 down-regulator of transcription 1 ISO RGD PMID:22426530 RGD:9681728 NCBI chr14:1,603,203...1,614,556
Ensembl chr14:1,603,204...1,614,556 		JBrowse link
G Eny2 ENY2, transcription and export complex 2 subunit ISO RGD PMID:22426530 RGD:9681728 NCBI chr 7:77,465,885...77,489,637
Ensembl chr 7:77,466,119...77,491,057 		JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO RGD PMID:21592869 RGD:9681726 NCBI chr 1:88,161,342...88,175,102
Ensembl chr 1:88,160,988...88,175,102 		JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO RGD PMID:21592869 RGD:9681726 NCBI chr18:24,157,831...24,188,543
Ensembl chr18:24,148,084...24,190,898 		JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease ISO RGD PMID:21592869 RGD:9681726 NCBI chr 9:53,801,471...53,846,611
Ensembl chr 9:53,801,714...53,875,084 		JBrowse link
G Gtf2a1 general transcription factor 2A subunit 1 ISO RGD PMID:24120742 RGD:9681721 NCBI chr 6:116,219,614...116,252,220
Ensembl chr 6:116,219,614...116,252,220 		JBrowse link
G Gtf2a2 general transcription factor 2A subunit 2 ISO RGD PMID:24120742 RGD:9681721 NCBI chr 8:79,542,682...79,556,484
Ensembl chr 8:79,547,307...79,565,408 		JBrowse link
G Gtf2b general transcription factor IIB ISO RGD PMID:24120742 RGD:9681721 NCBI chr 2:234,427,734...234,446,043
Ensembl chr 2:234,427,637...234,446,049 		JBrowse link
G Gtf2e1 general transcription factor IIE subunit 1 ISO RGD PMID:24120742 RGD:9681721 NCBI chr11:76,687,382...76,720,253
Ensembl chr11:76,687,772...76,720,784 		JBrowse link
G Gtf2e2 general transcription factor IIE subunit 2 ISO RGD PMID:24120742 RGD:9681721 NCBI chr16:65,102,386...65,152,563
Ensembl chr16:65,102,390...65,161,394 		JBrowse link
G Gtf2f1 general transcription factor IIF subunit 1 ISO RGD PMID:24120742 RGD:9681721 NCBI chr 9:1,931,033...1,940,197
Ensembl chr 9:1,930,055...1,940,197 		JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 ISO RGD PMID:24120742 RGD:9681721 NCBI chr15:57,615,361...57,736,477
Ensembl chr15:57,614,841...57,736,516 		JBrowse link
G Gtf2h1 general transcription factor IIH subunit 1 ISO RGD PMID:21592869 RGD:9681726 NCBI chr 1:106,457,692...106,485,729
Ensembl chr 1:106,457,394...106,485,727 		JBrowse link
G Gtf2h2 general transcription factor IIH subunit 2 ISO RGD PMID:21592869 RGD:9681726 NCBI chr 2:33,358,863...33,386,726
Ensembl chr 2:33,358,869...33,386,688 		JBrowse link
G Gtf2h3 general transcription factor IIH subunit 3 ISO RGD PMID:21592869 RGD:9681726 NCBI chr12:37,669,995...37,687,505
Ensembl chr12:37,669,997...37,686,466 		JBrowse link
G Gtf2h4 general transcription factor 2H subunit 4 ISO RGD PMID:21592869 RGD:9681726 NCBI chr20:3,076,110...3,081,805
Ensembl chr20:3,076,088...3,081,760 		JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 ISO RGD PMID:21592869 RGD:9681726 NCBI chr 1:49,061,904...49,068,612
Ensembl chr 1:49,061,959...49,070,039 		JBrowse link
G Hcfc2 host cell factor C2 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 7:22,875,440...22,907,391
Ensembl chr 7:22,864,278...22,907,322 		JBrowse link
G Kat14 lysine acetyltransferase 14 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 3:152,194,560...152,235,048
Ensembl chr 3:152,194,696...152,235,052 		JBrowse link
G Kat2a lysine acetyltransferase 2A ISO RGD PMID:22426530 RGD:9681728 NCBI chr10:86,132,535...86,140,877
Ensembl chr10:86,132,535...86,140,485 		JBrowse link
G Kat2b lysine acetyltransferase 2B ISO RGD PMID:22426530 RGD:9681728 NCBI chr 9:6,799,101...6,903,616
Ensembl chr 9:6,799,145...6,903,616 		JBrowse link
G Mbip MAP3K12 binding inhibitory protein 1 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 6:79,543,223...79,560,476
Ensembl chr 6:79,543,223...79,560,474 		JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase ISO RGD PMID:21592869 RGD:9681726 NCBI chr 6:97,550,566...97,706,598
Ensembl chr 6:97,550,543...97,706,595 		JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit ISO RGD PMID:22426530 RGD:9681728 NCBI chr 5:80,989,508...80,992,742
Ensembl chr 5:80,989,511...80,992,742
Ensembl chr 7:80,989,511...80,992,742 		JBrowse link
G Sgf29 SAGA complex associated factor 29 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 1:190,668,803...190,702,500
Ensembl chr 1:190,669,028...190,717,906 		JBrowse link
G Supt20h SPT20 homolog, SAGA complex component ISO RGD PMID:22426530 RGD:9681728 NCBI chr 2:141,047,479...141,080,656
Ensembl chr 2:141,047,477...141,081,361 		JBrowse link
G Supt3h SPT3 homolog, SAGA and STAGA complex component ISO RGD PMID:22426530 RGD:9681728 NCBI chr 9:23,375,889...23,704,229
Ensembl chr 9:23,376,136...23,704,466 		JBrowse link
G Supt7l SPT7 like, STAGA complex subunit gamma ISO RGD PMID:22426530 RGD:9681728 NCBI chr 6:30,653,928...30,664,066
Ensembl chr 6:30,653,888...30,664,642 		JBrowse link
G Tada1 transcriptional adaptor 1 ISO RGD PMID:22426530 RGD:9681728 NCBI chr13:81,165,871...81,180,421
Ensembl chr13:81,165,850...81,188,495 		JBrowse link
G Tada2a transcriptional adaptor 2A ISO RGD PMID:22426530 RGD:9681728 NCBI chr10:69,463,966...69,511,612
Ensembl chr10:69,463,968...69,511,607 		JBrowse link
G Tada2b transcriptional adaptor 2B ISO RGD PMID:22426530 RGD:9681728 NCBI chr14:78,503,939...78,523,715
Ensembl chr14:78,503,644...78,515,436 		JBrowse link
G Tada3 transcriptional adaptor 3 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 4:148,065,859...148,077,347
Ensembl chr 4:148,065,877...148,077,320 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 ISO RGD PMID:23146842 RGD:9681723 NCBI chr  X:70,680,901...70,756,535
Ensembl chr  X:70,680,906...70,756,735 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 ISO RGD PMID:23146842 PMID:22426530 RGD:9681723, RGD:9681728 NCBI chr 1:169,506,940...169,508,234
Ensembl chr 1:169,506,940...169,508,208 		JBrowse link
G Taf11 TATA-box binding protein associated factor 11 ISO RGD PMID:23146842 RGD:9681723 NCBI chr20:5,957,540...5,965,354
Ensembl chr20:5,957,540...5,963,636 		JBrowse link
G Taf12 TATA-box binding protein associated factor 12 ISO RGD PMID:23146842 PMID:22426530 RGD:9681723, RGD:9681728 NCBI chr 5:149,756,826...149,772,886
Ensembl chr 5:149,753,105...149,774,315 		JBrowse link
G Taf13 TATA-box binding protein associated factor 13 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 2:198,893,332...198,903,994
Ensembl chr 2:198,893,351...198,904,769 		JBrowse link
G Taf15 TATA-box binding protein associated factor 15 ISO RGD PMID:23146842 RGD:9681723 NCBI chr10:68,770,408...68,802,458
Ensembl chr10:68,770,430...68,802,458 		JBrowse link
G Taf2 TATA-box binding protein associated factor 2 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 7:88,312,374...88,369,399
Ensembl chr 7:88,312,374...88,369,377 		JBrowse link
G Taf3 TATA-box binding protein associated factor 3 ISO RGD PMID:23146842 RGD:9681723 NCBI chr17:73,365,162...73,518,053 JBrowse link
G Taf4 TATA-box binding protein associated factor 4 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 3:187,395,632...187,461,042
Ensembl chr 3:187,395,632...187,461,123 		JBrowse link
G Taf5 TATA-box binding protein associated factor 5 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 1:255,899,774...255,915,259
Ensembl chr 1:255,899,770...255,915,268 		JBrowse link
G Taf5l1 TATA-box binding protein associated factor 5 like 1 ISO RGD PMID:22426530 RGD:9681728 NCBI chr19:68,889,153...68,908,480
Ensembl chr19:68,889,158...68,908,466 		JBrowse link
G Taf6 TATA-box binding protein associated factor 6 ISO RGD PMID:23146842 RGD:9681723 NCBI chr12:22,169,570...22,178,031
Ensembl chr12:22,168,718...22,177,938 		JBrowse link
G Taf6l TATA-box binding protein associated factor 6 like ISO RGD PMID:22426530 RGD:9681728 NCBI chr 1:215,101,266...215,113,888
Ensembl chr 1:215,101,268...215,113,752 		JBrowse link
G Taf7 TATA-box binding protein associated factor 7 ISO RGD PMID:23146842 RGD:9681723 NCBI chr18:29,704,182...29,713,382
Ensembl chr18:29,705,920...29,712,712 		JBrowse link
G Taf8 TATA-box binding protein associated factor 8 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 9:20,989,554...21,009,541
Ensembl chr 9:20,989,465...21,009,983 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 ISO RGD PMID:23146842 PMID:22426530 RGD:9681723, RGD:9681728 NCBI chr 2:33,528,388...33,532,395
Ensembl chr 2:33,531,368...33,536,078 		JBrowse link
G Tbp TATA box binding protein ISO RGD PMID:24120742 PMID:23146842 RGD:9681721, RGD:9681723 NCBI chr 1:65,136,420...65,153,515
Ensembl chr 1:65,136,448...65,190,899 		JBrowse link
G Trrap transformation/transcription domain-associated protein ISO RGD PMID:22426530 RGD:9681728 NCBI chr12:14,851,758...14,941,444
Ensembl chr12:14,851,758...14,941,407 		JBrowse link
G Usp22 ubiquitin specific peptidase 22 ISO RGD PMID:22426530 RGD:9681728 NCBI chr10:46,328,092...46,354,939
Ensembl chr10:46,328,092...46,371,723 		JBrowse link
G Wdr5 WD repeat domain 5 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 3:31,233,048...31,254,730
Ensembl chr 3:31,235,222...31,254,727 		JBrowse link
G Yeats2 YEATS domain containing 2 ISO RGD PMID:22426530 RGD:9681728 NCBI chr11:94,247,538...94,333,652
Ensembl chr11:94,247,538...94,333,292 		JBrowse link
G Zzz3 zinc finger, ZZ-type containing 3 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 2:243,990,305...244,057,251
Ensembl chr 2:243,990,289...244,056,118 		JBrowse link
RNA polymerase II transcription pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnc cyclin C ISO RGD PMID:24088064 RGD:9681732 NCBI chr 5:40,063,589...40,081,731
Ensembl chr 5:40,063,623...40,093,370 		JBrowse link
G Cdc14a cell division cycle 14A ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr 2:206,910,475...207,070,537
Ensembl chr 2:206,910,475...207,091,722 		JBrowse link
G Cdc14b cell division cycle 14B ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr17:850,272...938,972
Ensembl chr17:850,390...971,164 		JBrowse link
G Cdk12 cyclin-dependent kinase 12 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr10:83,697,174...83,793,676
Ensembl chr10:83,767,206...83,777,183
Ensembl chr10:83,767,206...83,777,183 		JBrowse link
G Cdk19 cyclin-dependent kinase 19 ISO RGD PMID:24088064 RGD:9681732 NCBI chr20:45,324,911...45,465,121
Ensembl chr20:45,324,862...45,465,121 		JBrowse link
G Cdk7 cyclin-dependent kinase 7 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr 2:33,574,623...33,599,485
Ensembl chr 2:33,574,623...33,599,485 		JBrowse link
G Cdk8 cyclin-dependent kinase 8 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:24088064 PMID:23837720 PMID:22622228 RGD:9681732, RGD:9681738, RGD:9681737 NCBI chr12:13,851,024...13,919,017
Ensembl chr12:13,851,024...13,917,992 		JBrowse link
G Cdk9 cyclin-dependent kinase 9 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr 3:36,394,168...36,399,016
Ensembl chr 3:36,394,169...36,399,528 		JBrowse link
G Ctdp1 CTD phosphatase subunit 1 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr18:76,129,243...76,193,404
Ensembl chr18:76,129,243...76,190,578 		JBrowse link
G Ctdsp1 CTD small phosphatase 1 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr 9:83,422,755...83,428,411
Ensembl chr 9:83,423,051...83,428,412 		JBrowse link
G Med1 mediator complex subunit 1 ISO RGD PMID:24088064 RGD:9681732 NCBI chr10:83,641,851...83,685,560
Ensembl chr10:83,641,862...83,685,545 		JBrowse link
G Med10 mediator complex subunit 10 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 1:35,298,494...35,310,163
Ensembl chr 1:35,298,495...35,304,154 		JBrowse link
G Med11 mediator complex subunit 11 ISO RGD PMID:24088064 RGD:9681732 NCBI chr10:55,662,956...55,664,574
Ensembl chr10:55,663,001...55,664,765 		JBrowse link
G Med12 mediator complex subunit 12 ISO RGD PMID:24088064 RGD:9681732 NCBI chr  X:70,444,615...70,467,780
Ensembl chr  X:70,444,705...70,467,708 		JBrowse link
G Med12l mediator complex subunit 12L ISO RGD PMID:24088064 RGD:9681732 NCBI chr 2:145,403,318...145,726,317
Ensembl chr 2:145,404,375...145,723,516 		JBrowse link
G Med13 mediator complex subunit 13 ISO RGD PMID:24088064 RGD:9681732 NCBI chr10:71,584,354...71,674,614
Ensembl chr10:71,584,354...71,673,901 		JBrowse link
G Med13l mediator complex subunit 13L ISO RGD PMID:24088064 RGD:9681732 NCBI chr12:43,468,556...43,665,819
Ensembl chr12:43,468,556...43,665,819 		JBrowse link
G Med14 mediator complex subunit 14 ISO RGD PMID:24088064 RGD:9681732 NCBI chr  X:12,709,406...12,800,642
Ensembl chr  X:12,709,472...12,800,640 		JBrowse link
G Med15 mediator complex subunit 15 ISO RGD PMID:24088064 RGD:9681732 NCBI chr11:96,784,974...96,859,635
Ensembl chr11:96,784,999...96,859,644 		JBrowse link
G Med16 mediator complex subunit 16 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 7:10,449,273...10,461,797
Ensembl chr 7:10,449,186...10,461,797 		JBrowse link
G Med17 mediator complex subunit 17 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 8:20,382,995...20,401,993
Ensembl chr 8:20,382,995...20,401,993 		JBrowse link
G Med18 mediator complex subunit 18 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 5:149,947,345...149,952,672
Ensembl chr 5:149,946,908...149,952,808 		JBrowse link
G Med19 mediator complex subunit 19 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 3:90,168,829...90,179,351
Ensembl chr 3:90,168,829...90,179,351 		JBrowse link
G Med20 mediator complex subunit 20 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 9:20,867,681...20,880,288
Ensembl chr 9:20,867,681...20,880,011 		JBrowse link
G Med21 mediator complex subunit 21 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 4:181,291,191...181,314,504
Ensembl chr 4:181,291,271...181,298,234 		JBrowse link
G Med22 mediator complex subunit 22 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 3:30,631,829...30,636,911
Ensembl chr 3:30,631,829...30,636,911 		JBrowse link
G Med23 mediator complex subunit 23 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 1:22,309,613...22,377,745
Ensembl chr 1:22,309,613...22,356,754 		JBrowse link
G Med24 mediator complex subunit 24 ISO RGD PMID:24088064 RGD:9681732 NCBI chr10:84,160,866...84,198,607
Ensembl chr10:84,160,866...84,186,379 		JBrowse link
G Med25 mediator complex subunit 25 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 1:104,496,447...104,513,061
Ensembl chr 1:104,496,447...104,512,391 		JBrowse link
G Med26 mediator complex subunit 26 ISO RGD PMID:24088064 RGD:9681732 NCBI chr16:17,333,770...17,384,797
Ensembl chr16:17,327,734...17,383,603 		JBrowse link
G Med27 mediator complex subunit 27 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 3:33,027,240...33,201,240
Ensembl chr 3:33,027,525...33,201,240 		JBrowse link
G Med28 mediator complex subunit 28 ISO RGD PMID:24088064 RGD:9681732 NCBI chr14:69,807,319...69,816,115
Ensembl chr14:69,807,319...69,816,115 		JBrowse link
G Med29 mediator complex subunit 29 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 1:92,805,505...92,810,908 JBrowse link
G Med30 mediator complex subunit 30 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 7:85,894,638...85,916,373
Ensembl chr 7:85,894,605...85,917,973 		JBrowse link
G Med31 mediator complex subunit 31 ISO RGD PMID:24088064 RGD:9681732 NCBI chr10:57,335,507...57,338,889
Ensembl chr10:57,335,507...57,338,889 		JBrowse link
G Med4 mediator complex subunit 4 ISO RGD PMID:24088064 RGD:9681732 NCBI chr15:55,106,079...55,116,354
Ensembl chr15:55,105,998...55,116,429 		JBrowse link
G Med6 mediator complex subunit 6 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 6:107,001,664...107,015,130
Ensembl chr 6:106,990,116...107,015,130 		JBrowse link
G Med7 mediator complex subunit 7 ISO RGD PMID:24088064 RGD:9681732 NCBI chr10:31,343,613...31,359,192
Ensembl chr10:31,343,361...31,361,017 		JBrowse link
G Med8 mediator complex subunit 8 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 5:137,234,028...137,234,912
Ensembl chr 5:137,229,367...137,246,666 		JBrowse link
G Med9 mediator complex subunit 9 ISO RGD PMID:24088064 RGD:9681732 NCBI chr10:45,250,229...45,264,988
Ensembl chr10:45,250,223...45,264,987 		JBrowse link
G Polr2a RNA polymerase II subunit A ISO RGD PMID:22960599 RGD:9588243 NCBI chr10:54,951,162...54,977,179
Ensembl chr10:54,951,162...54,977,179 		JBrowse link
G Polr2b RNA polymerase II subunit B ISO RGD PMID:22960599 RGD:9588243 NCBI chr14:31,151,534...31,189,222
Ensembl chr14:31,151,390...31,189,222 		JBrowse link
G Polr2c RNA polymerase II subunit C ISO RGD PMID:22960599 RGD:9588243 NCBI chr19:10,164,148...10,170,930
Ensembl chr19:10,164,145...10,170,971 		JBrowse link
G Polr2d RNA polymerase II subunit D ISO RGD PMID:22960599 RGD:9588243 NCBI chr18:23,692,578...23,699,709
Ensembl chr18:23,692,578...23,699,709 		JBrowse link
G Polr2e RNA polymerase II, I and III subunit E ISO RGD PMID:22960599 RGD:9588243 NCBI chr 7:10,317,332...10,321,280
Ensembl chr 7:10,317,389...10,321,276 		JBrowse link
G Polr2f RNA polymerase II, I and III subunit F ISO RGD PMID:22960599 RGD:9588243 NCBI chr 7:112,592,977...112,604,681
Ensembl chr 7:112,593,027...112,604,666 		JBrowse link
G Polr2g RNA polymerase II subunit G ISO RGD PMID:22960599 RGD:9588243 NCBI chr 1:215,118,278...215,125,389
Ensembl chr 1:215,118,262...215,121,805 		JBrowse link
G Polr2h RNA polymerase II, I and III subunit H ISO RGD PMID:22960599 RGD:9588243 NCBI chr11:93,696,423...93,701,902
Ensembl chr10:105,353,444...105,354,241
Ensembl chr11:105,353,444...105,354,241 		JBrowse link
G Polr2i RNA polymerase II subunit I ISO RGD PMID:22960599 RGD:9588243 NCBI chr 1:94,610,976...94,612,413
Ensembl chr 1:94,610,942...94,613,000 		JBrowse link
G Polr2j RNA polymerase II subunit J ISO RGD PMID:22960599 RGD:9588243 NCBI chr12:26,179,649...26,185,201
Ensembl chr12:26,179,649...26,185,201 		JBrowse link
G Polr2k RNA polymerase II, I and III subunit K ISO RGD PMID:22960599 RGD:9588243 NCBI chr 7:69,241,233...69,244,579
Ensembl chr 7:69,232,179...69,244,578 		JBrowse link
G Polr2l RNA polymerase II, I and III subunit L ISO RGD PMID:22960599 RGD:9588243 NCBI chr 1:205,999,607...206,001,615
Ensembl chr19:8,341,868...8,342,071 		JBrowse link
G Rpap2 RNA polymerase II associated protein 2 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr14:2,253,966...2,332,251
Ensembl chr14:2,253,968...2,332,356 		JBrowse link
G Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr 5:171,595,919...171,625,675
Ensembl chr 5:171,595,851...171,625,268 		JBrowse link
RNA polymerase II transcription termination pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 3:90,213,461...90,217,165
Ensembl chr 3:90,213,465...90,217,538 		JBrowse link
G Cpsf1 cleavage and polyadenylation specific factor 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 7:110,200,078...110,210,644
Ensembl chr 7:110,199,066...110,210,644 		JBrowse link
G Cpsf2 cleavage and polyadenylation specific factor 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 6:126,885,417...126,917,634
Ensembl chr 6:126,885,476...126,917,632 		JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 6:46,564,855...46,592,776
Ensembl chr 6:46,564,735...46,594,136 		JBrowse link
G Cpsf4 cleavage and polyadenylation specific factor 4 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr12:14,543,536...14,559,350
Ensembl chr12:14,543,338...14,559,350 		JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 7:54,798,452...54,887,711
Ensembl chr 7:54,842,490...54,873,998 		JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 1:216,592,745...216,616,860
Ensembl chr 1:216,592,463...216,616,855 		JBrowse link
G Cstf1 cleavage stimulation factor subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 3:181,562,953...181,574,727
Ensembl chr 3:181,562,955...181,574,727 		JBrowse link
G Cstf2 cleavage stimulation factor subunit 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr  X:101,546,809...101,572,760
Ensembl chr  X:101,546,819...101,572,764 		JBrowse link
G Cstf2t cleavage stimulation factor subunit 2, tau variant ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 1:238,366,042...238,369,608
Ensembl chr 1:238,365,912...238,369,749 		JBrowse link
G Cstf3 cleavage stimulation factor subunit 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 3:111,421,291...111,492,539
Ensembl chr 3:111,421,234...111,497,046 		JBrowse link
G Dxo decapping exoribonuclease ISO RGD PMID:21957020 RGD:9681741 NCBI chr20:3,997,953...4,000,115
Ensembl chr20:3,997,955...4,000,037 		JBrowse link
G Fip1l1 factor interacting with PAPOLA and CPSF1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr14:33,969,341...34,030,871
Ensembl chr14:33,971,914...34,029,753 		JBrowse link
G Nudt21 nudix hydrolase 21 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr19:10,980,797...10,996,903
Ensembl chr19:10,980,158...10,999,754 		JBrowse link
G Pcf11 PCF11 cleavage and polyadenylation factor subunit ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 1:156,109,724...156,136,950
Ensembl chr 1:156,109,724...156,136,435 		JBrowse link
G Sympk symplekin scaffold protein ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 1:87,800,416...87,828,727
Ensembl chr 1:87,799,853...87,828,727 		JBrowse link
G Wdr33 WD repeat domain 33 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr18:23,706,708...23,812,985
Ensembl chr18:23,706,602...23,809,708 		JBrowse link
G Xrn2 5'-3' exoribonuclease 2 ISO RGD PMID:21957020 RGD:9681741 NCBI chr 3:154,888,558...154,962,519
Ensembl chr 3:154,890,061...154,962,486 		JBrowse link
RNA polymerase III transcription pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdp1 BDP1 general transcription factor IIIB subunit ISO RGD PMID:20890107 PMID:23031840 RGD:9685218, RGD:9588284 NCBI chr 2:33,112,518...33,204,270
Ensembl chr 2:33,112,518...33,204,241 		JBrowse link
G Brf1 BRF1 general transcription factor IIIB subunit ISO RGD PMID:20890107 PMID:23031840 RGD:9685218, RGD:9588284 NCBI chr 6:137,854,055...137,902,629
Ensembl chr 6:137,855,449...137,902,386 		JBrowse link
G Brf2 BRF2 general transcription factor 3B subunit ISO RGD PMID:20890107 PMID:23031840 RGD:9685218, RGD:9588284 NCBI chr16:71,626,146...71,635,909
Ensembl chr16:71,623,238...71,635,903 		JBrowse link
G Crcp CGRP receptor component ISO RGD PMID:12391170 RGD:9685217 NCBI chr12:32,260,108...32,315,116
Ensembl chr12:32,260,143...32,315,237 		JBrowse link
G Gtf3a general transcription factor III A ISO RGD PMID:23031840 RGD:9588284 NCBI chr12:13,250,643...13,258,587
Ensembl chr12:13,250,644...13,258,587 		JBrowse link
G Gtf3c1 general transcription factor IIIC subunit 1 ISO RGD PMID:23031840 RGD:9588284 NCBI chr 1:189,634,645...189,700,848
Ensembl chr 1:189,634,645...189,700,995 		JBrowse link
G Gtf3c2 general transcription factor IIIC subunit 2 ISO RGD PMID:23031840 RGD:9588284 NCBI chr 6:30,913,263...30,941,305
Ensembl chr 6:30,923,106...30,940,465 		JBrowse link
G Gtf3c3 general transcription factor IIIC subunit 3 ISO RGD PMID:23031840 RGD:9588284 NCBI chr 9:63,375,860...63,437,475
Ensembl chr 9:63,375,874...63,437,413 		JBrowse link
G Gtf3c4 general transcription factor IIIC subunit 4 ISO RGD PMID:23031840 RGD:9588284 NCBI chr 3:32,552,773...32,570,705
Ensembl chr 3:32,555,628...32,570,689 		JBrowse link
G Gtf3c5 general transcription factor IIIC subunit 5 ISO RGD PMID:23031840 RGD:9588284 NCBI chr 3:32,291,851...32,312,188
Ensembl chr 3:32,291,859...32,312,164 		JBrowse link
G Gtf3c6 general transcription factor 3C subunit 6 ISO RGD PMID:23031840 RGD:9588284 NCBI chr20:45,210,906...45,222,888
Ensembl chr20:45,210,389...45,222,375 		JBrowse link
G Maf1 MAF1 negative regulator of RNA polymerase III ISO RGD PMID:23031840 PMID:23165150 RGD:9588284, RGD:9685221 NCBI chr 7:109,955,876...109,958,909
Ensembl chr 7:109,955,282...109,958,910 		JBrowse link
G Polr1c RNA polymerase I and III subunit C ISO RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr 9:22,233,318...22,237,430
Ensembl chr 9:22,233,305...22,237,428 		JBrowse link
G Polr1d RNA polymerase I and III subunit D ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr12:13,084,505...13,118,069
Ensembl chr12:13,084,512...13,095,627 		JBrowse link
G Polr2e RNA polymerase II, I and III subunit E ISO RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr 7:10,317,332...10,321,280
Ensembl chr 7:10,317,389...10,321,276 		JBrowse link
G Polr2f RNA polymerase II, I and III subunit F ISO RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr 7:112,592,977...112,604,681
Ensembl chr 7:112,593,027...112,604,666 		JBrowse link
G Polr2h RNA polymerase II, I and III subunit H ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr11:93,696,423...93,701,902
Ensembl chr10:105,353,444...105,354,241
Ensembl chr11:105,353,444...105,354,241 		JBrowse link
G Polr2k RNA polymerase II, I and III subunit K ISO RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr 7:69,241,233...69,244,579
Ensembl chr 7:69,232,179...69,244,578 		JBrowse link
G Polr2l RNA polymerase II, I and III subunit L ISO RGD PMID:12391170 PMID:20890107 RGD:9685217 RGD:9685218 NCBI chr 1:205,999,607...206,001,615
Ensembl chr19:8,341,868...8,342,071 		JBrowse link
G Polr3a RNA polymerase III subunit A ISO RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr16:56,066...95,060
Ensembl chr16:56,066...95,060 		JBrowse link
G Polr3b RNA polymerase III subunit B ISO RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr 7:20,926,866...21,030,133
Ensembl chr 7:20,926,866...21,033,654 		JBrowse link
G Polr3c RNA polymerase III subunit C ISO RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr 2:186,935,038...186,950,962
Ensembl chr 2:186,935,038...186,950,962 		JBrowse link
G Polr3d RNA polymerase III subunit D ISO RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr15:51,921,283...51,925,952
Ensembl chr15:51,921,283...51,925,691 		JBrowse link
G Polr3e RNA polymerase III subunit E ISO RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr 1:184,897,383...184,925,547
Ensembl chr 1:184,897,426...184,926,534 		JBrowse link
G Polr3f RNA polymerase III subunit F ISO RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr 3:152,361,798...152,378,169
Ensembl chr 3:152,361,798...152,378,168 		JBrowse link
G Polr3g RNA polymerase III subunit G ISO RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr 2:13,680,893...13,721,802
Ensembl chr 2:13,680,895...13,721,802 		JBrowse link
G Polr3gl RNA polymerase III subunit GL ISO RGD PMID:20890107 RGD:9685218 NCBI chr 2:186,800,419...186,818,048
Ensembl chr 2:186,800,351...186,805,197 		JBrowse link
G Polr3h RNA polymerase III subunit H ISO RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr 7:115,309,571...115,319,881
Ensembl chr 7:115,309,589...115,319,915 		JBrowse link
G Polr3k RNA polymerase III subunit K ISO RGD PMID:12391170 PMID:20890107 RGD:9685217, RGD:9685218 NCBI chr 3:189,360,349...189,364,546
Ensembl chr 3:189,360,171...189,366,697 		JBrowse link
G Pou2f1 POU class 2 homeobox 1 ISO RGD PMID:20890107 RGD:9685218 NCBI chr13:80,653,602...80,796,279
Ensembl chr13:80,663,714...80,796,356 		JBrowse link
G Rb1 RB transcriptional corepressor 1 ISO RGD PMID:23063750 RGD:9685222 NCBI chr15:54,780,858...54,911,989
Ensembl chr15:54,780,858...54,911,857 		JBrowse link
G Snapc1 small nuclear RNA activating complex, polypeptide 1 ISO RGD PMID:23031840 RGD:9588284 NCBI chr 6:98,420,588...98,442,065
Ensembl chr 6:98,420,340...98,442,489 		JBrowse link
G Snapc2 small nuclear RNA activating complex, polypeptide 2 ISO RGD PMID:23031840 RGD:9588284 NCBI chr12:7,403,650...7,406,840
Ensembl chr12:7,403,469...7,406,840 		JBrowse link
G Snapc3 small nuclear RNA activating complex, polypeptide 3 ISO RGD PMID:23031840 RGD:9588284 NCBI chr 5:102,863,867...102,890,573
Ensembl chr 5:102,863,854...102,893,499 		JBrowse link
G Snapc4 small nuclear RNA activating complex, polypeptide 4 ISO RGD PMID:23031840 RGD:9588284 NCBI chr 3:29,580,157...29,598,440
Ensembl chr 3:29,580,159...29,597,610 		JBrowse link
G Snapc5 small nuclear RNA activating complex, polypeptide 5 ISO RGD PMID:23031840 RGD:9588284 NCBI chr 8:73,572,503...73,576,068
Ensembl chr 8:73,572,496...73,577,137 		JBrowse link
G Sub1 SUB1 regulator of transcription ISO RGD PMID:23165150 PMID:23128323 RGD:9685221, RGD:9685220 NCBI chr 2:62,735,379...62,747,545
Ensembl chr 2:62,732,736...62,747,679 		JBrowse link
G Tbp TATA box binding protein ISO RGD PMID:20890107 PMID:23031840 RGD:9685218, RGD:9588284 NCBI chr 1:65,136,420...65,153,515
Ensembl chr 1:65,136,448...65,190,899 		JBrowse link
G Zfp143 zinc finger protein 143 ISO RGD PMID:20890107 RGD:9685218 NCBI chr 1:173,543,810...173,579,667
Ensembl chr 1:173,543,863...173,579,660 		JBrowse link
spliceosome pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aar2 AAR2 splicing factor ISO RGD PMID:23592432 RGD:9686090 NCBI chr 3:165,517,467...165,540,260
Ensembl chr 3:165,517,556...165,548,519 		JBrowse link
G Acin1 apoptotic chromatin condensation inducer 1 IEA KEGG rno:03040 NCBI chr15:32,072,121...32,117,004
Ensembl chr15:32,072,123...32,117,166 		JBrowse link
G Alyref Aly/REF export factor IEA KEGG rno:03040 NCBI chr10:106,369,750...106,373,395
Ensembl chr10:106,369,750...106,373,395 		JBrowse link
G Aqr aquarius intron-binding spliceosomal factor IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 3:121,329,287...121,399,375
Ensembl chr 3:121,329,289...121,399,321 		JBrowse link
G Bcas2 BCAS2, pre-mRNA processing factor IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 2:193,381,000...193,388,881
Ensembl chr 2:193,380,982...193,388,878 		JBrowse link
G Bud31 BUD31 spliceosome associated protein IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr12:14,576,602...14,584,132
Ensembl chr12:14,576,605...14,584,039 		JBrowse link
G Ccdc12 coiled-coil domain containing 12 IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 8:119,513,007...119,564,802
Ensembl chr 8:119,514,094...119,564,802 		JBrowse link
G Cdc40 cell division cycle 40 IEA KEGG rno:03040 NCBI chr20:45,855,739...45,908,239
Ensembl chr20:45,855,739...45,907,978 		JBrowse link
G Cdc5l cell division cycle 5-like IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 9:23,062,397...23,100,901
Ensembl chr 9:23,062,205...23,100,899 		JBrowse link
G Cherp calcium homeostasis endoplasmic reticulum protein IEA KEGG rno:03040 NCBI chr16:17,401,497...17,414,549
Ensembl chr16:17,401,497...17,414,549 		JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 3:153,764,718...153,807,973
Ensembl chr 6:6,894,292...6,896,635
Ensembl chr 3:6,894,292...6,896,635 		JBrowse link
G Ctnnbl1 catenin, beta like 1 IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 3:166,807,899...166,968,932
Ensembl chr 3:166,807,858...166,968,931 		JBrowse link
G Cwc15 CWC15 spliceosome-associated protein IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 8:19,586,900...19,597,817
Ensembl chr 2:77,747,121...77,747,856
Ensembl chr 8:77,747,121...77,747,856 		JBrowse link
G Ddx23 DEAD-box helicase 23 IEA
ISO 		KEGG
RGD		 PMID:19239890 PMID:23454554 rno:03040, RGD:9686089, RGD:9686093 NCBI chr 7:131,676,636...131,693,917
Ensembl chr 7:131,676,636...131,689,074 		JBrowse link
G Ddx39b DExD-box helicase 39B ISO RGD PMID:23454554 RGD:9686093 NCBI chr20:3,577,200...3,589,651
Ensembl chr20:3,576,734...3,589,651 		JBrowse link
G Ddx42 DEAD-box helicase 42 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr10:91,648,719...91,680,730
Ensembl chr10:91,648,248...91,680,729 		JBrowse link
G Ddx46 DEAD-box helicase 46 IEA
ISO 		KEGG
RGD		 PMID:23454554 rno:03040, RGD:9686093 NCBI chr17:8,947,237...8,993,705
Ensembl chr17:8,947,237...8,990,247 		JBrowse link
G Ddx5 DEAD-box helicase 5 IEA KEGG rno:03040 NCBI chr10:92,224,393...92,231,928
Ensembl chr10:92,224,395...92,231,300 		JBrowse link
G Dhx15 DEAH-box helicase 15 IEA KEGG rno:03040 NCBI chr14:62,999,886...63,037,829
Ensembl chr14:62,999,877...63,037,828 		JBrowse link
G Dhx16 DEAH-box helicase 16 IEA
ISO 		KEGG
RGD		 PMID:23454554 rno:03040, RGD:9686093 NCBI chr20:2,866,804...2,879,790
Ensembl chr20:2,866,804...2,879,751 		JBrowse link
G Dhx38 DEAH-box helicase 38 IEA
ISO 		KEGG
RGD		 PMID:23454554 rno:03040, RGD:9686093 NCBI chr19:54,422,418...54,439,434
Ensembl chr19:54,422,418...54,439,423 		JBrowse link
G Dhx8 DEAH-box helicase 8 IEA
ISO 		KEGG
RGD		 PMID:23454554 rno:03040, RGD:9686093 NCBI chr10:87,167,861...87,204,426
Ensembl chr10:87,168,062...87,205,875 		JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 IEA
ISO 		KEGG
RGD		 PMID:23454554 PMID:23592432 rno:03040, RGD:9686093, RGD:9686090 NCBI chr10:88,304,992...88,352,229
Ensembl chr10:88,304,992...88,346,299 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 IEA
ISO 		KEGG
RGD		 PMID:15145352 rno:03040, RGD:9686404 NCBI chr10:105,047,567...105,057,561
Ensembl chr10:105,047,568...105,058,207 		JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 ISO RGD PMID:17537823 RGD:9686091 NCBI chr17:6,513,129...6,515,786
Ensembl chr17:6,512,629...6,516,127 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 IEA
ISO 		KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr 7:136,253,633...136,260,085
Ensembl chr 7:136,253,278...136,260,085 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 4:81,867,354...81,875,886
Ensembl chr 4:81,869,661...81,877,572 		JBrowse link
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 IEA KEGG rno:03040 NCBI chr 3:80,984,470...80,999,413
Ensembl chr 3:80,985,969...80,996,043 		JBrowse link
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:36,358,004...36,363,898
Ensembl chr10:36,358,006...36,364,307 		JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C IEA
ISO 		KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr15:27,253,098...27,282,779
Ensembl chr15:27,253,098...27,282,715 		JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:17537823 RGD:9686091 NCBI chr14:9,918,630...9,938,072
Ensembl chr14:9,919,739...9,938,066 		JBrowse link
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:35,187,412...35,203,909
Ensembl chr10:35,193,890...35,203,906 		JBrowse link
G Hnrnph3 heterogeneous nuclear ribonucleoprotein H3 ISO RGD PMID:17537823 RGD:9686091 NCBI chr20:25,619,540...25,624,397
Ensembl chr20:25,615,577...25,625,162 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEA
ISO 		KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr17:6,269,302...6,280,429
Ensembl chr17:6,268,385...6,280,565 		JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L ISO RGD PMID:17537823 RGD:9686091 NCBI chr 1:93,226,373...93,239,084
Ensembl chr 1:93,235,729...93,239,061 		JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 7:15,140,877...15,178,871
Ensembl chr 7:15,129,287...15,178,871 		JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:17537823 RGD:9686091 NCBI chr 5:153,826,482...153,872,272
Ensembl chr 5:153,826,692...153,858,344 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U IEA
ISO 		KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr13:92,609,791...92,618,580
Ensembl chr13:92,605,216...92,618,612 		JBrowse link
G Hspa1a heat shock protein family A (Hsp70) member 1A IEA KEGG rno:03040 NCBI chr20:3,875,411...3,877,866
Ensembl chr20:3,855,780...3,877,979 		JBrowse link
G Hspa1b heat shock protein family A (Hsp70) member 1B IEA KEGG rno:03040 NCBI chr20:3,859,756...3,863,800
Ensembl chr20:3,855,780...3,877,979 		JBrowse link
G Hspa1l heat shock protein family A (Hsp70) member 1 like IEA KEGG rno:03040 NCBI chr20:3,853,496...3,860,223
Ensembl chr20:3,853,331...3,876,877 		JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 IEA KEGG rno:03040 NCBI chr 6:100,864,172...100,866,946
Ensembl chr 6:100,864,553...100,867,133 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 8:50,080,514...50,084,376
Ensembl chr 8:50,080,199...50,084,372 		JBrowse link
G Isy1 ISY1 spliceosome associated protein ISO RGD PMID:23742842 RGD:9686094 NCBI chr 4:121,833,870...121,854,561
Ensembl chr 4:121,806,992...121,854,561 		JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO 		KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr20:3,848,120...3,853,298
Ensembl chr20:3,848,119...3,851,891 		JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO 		KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr 4:125,578,185...125,584,429
Ensembl chr 4:125,578,185...125,584,429 		JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO 		KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr16:18,789,466...18,795,164
Ensembl chr16:18,789,467...18,794,886 		JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated IEA KEGG rno:03040 NCBI chr 4:87,281,260...87,284,476
Ensembl chr 4:87,281,260...87,284,476
Ensembl chr 6:87,281,260...87,284,476 		JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO 		KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr19:46,002,592...46,017,152 JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO 		KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr 7:9,507,373...9,509,787
Ensembl chr 7:9,507,367...9,514,115 		JBrowse link
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 4:48,272,128...48,277,994
Ensembl chr 4:48,272,164...48,280,162 		JBrowse link
G Magoh mago homolog, exon junction complex subunit IEA KEGG rno:03040 NCBI chr 5:127,868,044...127,875,423
Ensembl chr 5:127,868,055...127,875,384 		JBrowse link
G Magohb mago homolog B, exon junction complex subunit IEA
ISO 		KEGG
RGD		 PMID:15145352 rno:03040, RGD:9686404 NCBI chr 4:166,765,558...166,773,406
Ensembl chr 4:166,765,618...166,773,851 		JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 2:146,789,570...146,964,136
Ensembl chr 2:146,789,596...146,964,134 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 IEA KEGG rno:03040 NCBI chr 5:65,211,632...65,244,532
Ensembl chr 5:65,211,358...65,244,665 		JBrowse link
G Pcbp1 poly(rC) binding protein 1 IEA KEGG rno:03040 NCBI chr 4:120,530,100...120,532,107
Ensembl chr 4:120,529,172...120,539,111 		JBrowse link
G Phf5a PHD finger protein 5A IEA KEGG rno:03040 NCBI chr 7:115,258,609...115,265,174
Ensembl chr 7:115,258,609...115,265,174 		JBrowse link
G Pigz phosphatidylinositol glycan anchor biosynthesis, class Z IEA KEGG rno:03040 NCBI chr11:82,336,821...82,357,743
Ensembl chr11:82,336,823...82,340,684 		JBrowse link
G Plrg1 pleiotropic regulator 1 IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 2:170,706,188...170,722,519
Ensembl chr 2:170,706,173...170,722,573 		JBrowse link
G Pnn pinin, desmosome associated protein ISO RGD PMID:15145352 RGD:9686404 NCBI chr 6:82,493,032...82,501,345
Ensembl chr 6:82,492,978...82,501,933 		JBrowse link
G Ppie peptidylprolyl isomerase E IEA
ISO 		KEGG
RGD		 PMID:18544344 PMID:23742842 rno:03040, RGD:9686376, RGD:9686094 NCBI chr 5:140,691,285...140,704,347
Ensembl chr 5:140,683,801...140,740,767 		JBrowse link
G Ppig peptidylprolyl isomerase G ISO RGD PMID:18544344 RGD:9686376 NCBI chr 3:74,891,846...74,923,010
Ensembl chr 3:74,891,846...74,920,750 		JBrowse link
G Ppih peptidylprolyl isomerase H IEA
ISO 		KEGG
RGD		 PMID:18544344 rno:03040, RGD:9686376 NCBI chr 5:138,191,624...138,209,625
Ensembl chr 5:138,191,624...138,209,580 		JBrowse link
G Ppil1 peptidylprolyl isomerase like 1 IEA
ISO 		KEGG
RGD		 PMID:18544344 PMID:23742842 rno:03040, RGD:9686376, RGD:9686094 NCBI chr20:7,303,919...7,323,962
Ensembl chr20:7,303,922...7,318,781 		JBrowse link
G Ppil2 peptidylprolyl isomerase like 2 ISO RGD PMID:18544344 RGD:9686376 NCBI chr11:97,401,944...97,424,581
Ensembl chr11:97,401,963...97,430,769 		JBrowse link
G Ppil3 peptidylprolyl isomerase like 3 ISO RGD PMID:18544344 RGD:9686376 NCBI chr 9:67,460,594...67,474,325
Ensembl chr 9:67,460,595...67,474,251 		JBrowse link
G Pqbp1 polyglutamine binding protein 1 IEA KEGG rno:03040 NCBI chr  X:17,275,445...17,280,018
Ensembl chr  X:17,275,759...17,280,016 		JBrowse link
G Prpf18 pre-mRNA processing factor 18 IEA
ISO 		KEGG
RGD		 PMID:24452469 rno:03040, RGD:9686092 NCBI chr17:78,539,004...78,570,483
Ensembl chr17:78,539,839...78,600,250 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 1:216,966,104...216,977,549
Ensembl chr 1:216,966,462...216,980,506 		JBrowse link
G Prpf3 pre-mRNA processing factor 3 IEA
ISO 		KEGG
RGD		 PMID:19239890 rno:03040, RGD:9686089 NCBI chr 2:186,067,980...186,092,427
Ensembl chr 2:186,067,162...186,092,427 		JBrowse link
G Prpf31 pre-mRNA processing factor 31 IEA
ISO 		KEGG
RGD		 PMID:19239890 rno:03040, RGD:9686089 NCBI chr 1:74,491,247...74,502,922
Ensembl chr 1:74,491,247...74,502,922 		JBrowse link
G Prpf38a pre-mRNA processing factor 38A IEA KEGG rno:03040 NCBI chr 5:128,541,166...128,552,865
Ensembl chr 5:128,541,166...128,552,865 		JBrowse link
G Prpf38b pre-mRNA processing factor 38B IEA KEGG rno:03040 NCBI chr 2:199,241,312...199,250,342
Ensembl chr 2:199,241,313...199,250,338 		JBrowse link
G Prpf4 pre-mRNA splicing tri-snRNP complex factor PRPF4 IEA
ISO 		KEGG
RGD		 PMID:19239890 rno:03040, RGD:9686089 NCBI chr 5:80,875,511...80,889,501
Ensembl chr 5:80,875,498...80,889,497 		JBrowse link
G Prpf40a pre-mRNA processing factor 40A IEA KEGG rno:03040 NCBI chr 3:58,036,779...58,098,996
Ensembl chr 3:58,038,042...58,099,363 		JBrowse link
G Prpf6 pre-mRNA processing factor 6 IEA
ISO 		KEGG
RGD		 PMID:19239890 rno:03040, RGD:9686089 NCBI chr 3:189,084,465...189,148,705
Ensembl chr 3:189,081,794...189,152,786 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 IEA
ISO 		KEGG
RGD		 PMID:23592432 rno:03040, RGD:9686090 NCBI chr10:60,829,778...60,852,887
Ensembl chr10:60,829,778...60,852,887 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr 7:10,493,199...10,502,957
Ensembl chr 7:10,493,200...10,502,957 		JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 2:210,497,610...210,558,497
Ensembl chr 2:210,497,706...210,558,291 		JBrowse link
G Puf60 poly-U binding splicing factor 60 IEA KEGG rno:03040 NCBI chr 7:109,663,490...109,674,443
Ensembl chr 7:109,663,490...109,674,724 		JBrowse link
G Qki QKI, KH domain containing RNA binding ISO RGD PMID:23385723 RGD:9686381 NCBI chr 1:52,935,357...53,047,338
Ensembl chr 1:52,935,382...53,047,337 		JBrowse link
G Rbm17 RNA binding motif protein 17 IEA KEGG rno:03040 NCBI chr17:71,846,941...71,863,834
Ensembl chr17:71,846,916...71,864,431 		JBrowse link
G Rbm22 RNA binding motif protein 22 IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr18:56,283,807...56,294,615
Ensembl chr18:56,283,770...56,295,073 		JBrowse link
G Rbm25 RNA binding motif protein 25 IEA KEGG rno:03040 NCBI chr 6:108,993,119...109,050,159
Ensembl chr 6:109,002,869...109,050,159 		JBrowse link
G Rbm25l1 RNA binding motif protein 25-like 1 IEA KEGG rno:03040 NCBI chr10:10,773,494...10,776,509
Ensembl chr10:10,773,546...10,779,138 		JBrowse link
G Rbm8a RNA binding motif protein 8A IEA
ISO 		KEGG
RGD		 PMID:15145352 rno:03040, RGD:9686404 NCBI chr 2:186,854,018...186,856,802
Ensembl chr 2:186,854,036...186,856,802 		JBrowse link
G Rbmx RNA binding motif protein, X-linked IEA
ISO 		KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr  X:140,342,544...140,352,121
Ensembl chr  X:140,345,571...140,352,035 		JBrowse link
G Rbmxl1 Rbmx like 1 IEA KEGG rno:03040 NCBI chr19:46,312,176...46,315,802
Ensembl chr19:46,311,280...46,327,195 		JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 ISO RGD PMID:15145352 RGD:9686404 NCBI chr10:13,950,151...13,960,396
Ensembl chr10:13,950,184...13,960,393 		JBrowse link
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP IEA KEGG rno:03040 NCBI chr 1:212,119,824...212,128,517
Ensembl chr 1:212,104,557...212,128,486 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein ISO RGD PMID:23592432 RGD:9686090 NCBI chr12:48,519,579...48,547,584
Ensembl chr12:48,519,849...48,547,583 		JBrowse link
G Sf1 splicing factor 1 ISO RGD PMID:19239890 RGD:9686089 NCBI chr 1:213,090,256...213,112,688
Ensembl chr 1:213,099,260...213,113,590 		JBrowse link
G Sf3a1 splicing factor 3A subunit 1 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr14:83,254,971...83,275,720
Ensembl chr14:83,254,971...83,275,720 		JBrowse link
G Sf3a2 splicing factor 3A subunit 2 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 7:9,560,182...9,566,205
Ensembl chr 7:9,560,182...9,566,205 		JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 5:142,246,556...142,272,053
Ensembl chr 5:142,246,568...142,272,052 		JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 9:63,986,829...64,026,723
Ensembl chr 9:63,986,829...64,026,719 		JBrowse link
G Sf3b2 splicing factor 3b, subunit 2 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 1:211,999,777...212,040,686
Ensembl chr 1:211,999,778...212,020,113 		JBrowse link
G Sf3b3 splicing factor 3b, subunit 3 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr19:55,692,124...55,729,640
Ensembl chr19:55,692,126...55,729,621 		JBrowse link
G Sf3b4 splicing factor 3B subunit 4 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 2:186,421,667...186,426,419
Ensembl chr 2:186,421,636...186,426,833 		JBrowse link
G Sf3b5 splicing factor 3b, subunit 5 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 1:9,177,189...9,177,901
Ensembl chr 1:9,177,098...9,177,900 		JBrowse link
G Sf3b6 splicing factor 3B, subunit 6 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 6:33,545,495...33,554,537
Ensembl chr 6:33,545,512...33,554,608 		JBrowse link
G Slu7 spliceosome associated SLU7 IEA
ISO 		KEGG
RGD		 PMID:24452469 rno:03040, RGD:9686092 NCBI chr10:28,406,908...28,425,253
Ensembl chr10:28,409,846...28,425,250 		JBrowse link
G Smndc1 survival motor neuron domain containing 1 IEA KEGG rno:03040 NCBI chr 1:262,395,034...262,406,104
Ensembl chr 1:262,386,590...262,405,707 		JBrowse link
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 ISO RGD PMID:23592432 PMID:23454554 RGD:9686090, RGD:9686093 NCBI chr 3:134,882,173...134,911,512
Ensembl chr 3:134,882,173...134,911,500 		JBrowse link
G Snrnp27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 IEA KEGG rno:03040 NCBI chr 4:120,681,054...120,691,343
Ensembl chr 4:120,679,255...120,690,656 		JBrowse link
G Snrnp40 small nuclear ribonucleoprotein U5 subunit 40 IEA KEGG rno:03040 NCBI chr 5:147,984,758...148,017,932
Ensembl chr 5:147,984,656...148,018,725 		JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 IEA
ISO 		KEGG
RGD		 PMID:23592432 rno:03040, RGD:9686090 NCBI chr 1:104,992,518...105,012,851
Ensembl chr 1:104,992,442...105,012,851 		JBrowse link
G Snrpa small nuclear ribonucleoprotein polypeptide A IEA
ISO 		KEGG
RGD		 PMID:23592432 rno:03040, RGD:9686090 NCBI chr 1:91,609,419...91,618,119
Ensembl chr 1:91,609,420...91,618,042 		JBrowse link
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' ISO RGD PMID:17537823 RGD:9686091 NCBI chr 1:129,051,492...129,065,114
Ensembl chr 1:129,048,943...129,065,114 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 IEA
ISO 		KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr 3:137,824,870...137,832,479
Ensembl chr 3:137,824,683...137,832,515 		JBrowse link
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 3:150,852,814...150,862,364
Ensembl chr 3:150,852,790...150,863,428 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C IEA
ISO 		KEGG
RGD		 PMID:23592432 rno:03040, RGD:9686090 NCBI chr20:5,890,229...5,908,410
Ensembl chr20:5,890,229...5,908,410 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide IEA
ISO 		KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr18:1,969,351...1,980,207
Ensembl chr18:1,969,674...1,980,207 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide IEA
ISO 		KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr 1:87,926,030...87,929,259
Ensembl chr 1:87,926,048...87,933,339
Ensembl chr20:87,926,048...87,933,339 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr20:13,129,555...13,145,100
Ensembl chr20:13,109,294...13,145,763 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E IEA
ISO 		KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr13:47,596,324...47,609,390
Ensembl chr 8:129,294,325...129,294,603
Ensembl chr13:129,294,325...129,294,603 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F IEA
ISO 		KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr 7:30,017,460...30,024,162
Ensembl chr 7:30,017,460...30,024,162 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 4:120,369,676...120,377,263
Ensembl chr 4:120,369,685...120,377,261
Ensembl chr  X:120,369,685...120,377,261 		JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 IEA
ISO 		KEGG
RGD		 PMID:19239890 rno:03040, RGD:9686089 NCBI chr 7:115,445,415...115,451,008
Ensembl chr 1:269,702,002...269,703,004
Ensembl chr 7:269,702,002...269,703,004 		JBrowse link
G Snu13l1 small nuclear ribonucleoprotein 13 like 1 IEA KEGG rno:03040 NCBI chr  X:155,666,366...155,666,788
Ensembl chr  X:155,666,381...155,666,767 		JBrowse link
G Snw1 SNW domain containing 1 IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 6:112,826,374...112,850,459
Ensembl chr 6:112,826,381...112,858,180 		JBrowse link
G Srrm1 serine and arginine repetitive matrix 1 ISO RGD PMID:17537823 PMID:15145352 RGD:9686091, RGD:9686404 NCBI chr 5:152,843,167...152,875,554
Ensembl chr 5:152,843,169...152,875,436 		JBrowse link
G Srrm2 serine/arginine repetitive matrix 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:13,320,059...13,353,337
Ensembl chr10:13,320,059...13,353,337 		JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 ISO RGD PMID:23498935 RGD:9686382 NCBI chr12:45,659,729...45,819,643
Ensembl chr12:45,660,450...45,816,475 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr10:73,335,519...73,342,549
Ensembl chr10:73,336,422...73,342,548 		JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 5:153,372,307...153,386,520
Ensembl chr 5:153,372,316...153,386,513 		JBrowse link
G Srsf11 serine and arginine rich splicing factor 11 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 2:249,733,464...249,760,296
Ensembl chr 2:249,733,464...249,760,499 		JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 5:52,402,033...52,427,839
Ensembl chr 5:52,402,618...52,427,846 		JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:102,550,962...102,554,200
Ensembl chr10:102,553,072...102,554,141 		JBrowse link
G Srsf3 serine and arginine rich splicing factor 3 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr20:7,093,529...7,103,517
Ensembl chr20:7,093,565...7,103,516 		JBrowse link
G Srsf4 serine and arginine rich splicing factor 4 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 5:149,345,538...149,373,309
Ensembl chr 5:149,345,422...149,374,609 		JBrowse link
G Srsf5 serine and arginine rich splicing factor 5 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 6:106,333,998...106,341,467
Ensembl chr 6:106,336,756...106,341,931 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 3:172,009,072...172,014,395
Ensembl chr 3:172,009,061...172,014,392 		JBrowse link
G Srsf7 serine and arginine rich splicing factor 7 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 6:20,564,035...20,571,205
Ensembl chr 6:20,564,044...20,571,212 		JBrowse link
G Srsf9 serine and arginine rich splicing factor 9 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr12:46,938,948...46,945,213
Ensembl chr12:46,938,950...46,945,283 		JBrowse link
G Syf2 SYF2 pre-mRNA-splicing factor IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 5:152,440,171...152,448,094
Ensembl chr 5:152,440,054...152,448,092 		JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein ISO RGD PMID:17537823 RGD:9686091 NCBI chr 8:98,282,358...98,315,412
Ensembl chr 8:98,282,358...98,315,386 		JBrowse link
G Tcerg1 transcription elongation regulator 1 IEA KEGG rno:03040 NCBI chr18:34,756,558...34,817,441
Ensembl chr18:34,756,725...34,817,441 		JBrowse link
G Thoc1 THO complex subunit 1 IEA KEGG rno:03040 NCBI chr18:1,253,041...1,291,956
Ensembl chr18:1,256,637...1,292,630 		JBrowse link
G Thoc2 THO complex subunit 2 IEA KEGG rno:03040 NCBI chr  X:125,500,549...125,615,139
Ensembl chr  X:125,500,549...125,615,087 		JBrowse link
G Thoc3 THO complex subunit 3 IEA KEGG rno:03040 NCBI chr17:10,148,281...10,157,472
Ensembl chr17:10,147,981...10,158,275 		JBrowse link
G Tial1 Tia1 cytotoxic granule-associated RNA binding protein-like 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr 1:192,438,794...192,475,520
Ensembl chr 1:192,441,247...192,475,674 		JBrowse link
G Tra2a transformer 2 alpha IEA KEGG rno:03040 NCBI chr 4:79,551,699...79,570,621
Ensembl chr 4:79,551,542...79,570,619 		JBrowse link
G Tra2b transformer 2 beta IEA KEGG rno:03040 NCBI chr11:92,293,403...92,311,651
Ensembl chr11:92,293,410...92,311,781 		JBrowse link
G Txnl4a thioredoxin-like 4A ISO RGD PMID:19239890 RGD:9686089 NCBI chr18:75,934,085...75,949,873
Ensembl chr18:75,933,993...75,949,873 		JBrowse link
G U2af1 U2 small nuclear RNA auxiliary factor 1 ISO RGD PMID:19239890 RGD:9686089 NCBI chr20:9,744,206...9,755,146
Ensembl chr20:9,744,207...9,755,094 		JBrowse link
G U2af2 U2 small nuclear RNA auxiliary factor 2 IEA
ISO 		KEGG
RGD		 PMID:19239890 rno:03040, RGD:9686089 NCBI chr 1:77,789,752...77,807,307
Ensembl chr 1:77,789,752...77,807,413 		JBrowse link
G U2surp U2 snRNP-associated SURP domain containing IEA KEGG rno:03040 NCBI chr 8:104,898,580...104,963,642
Ensembl chr 8:104,898,425...104,955,422 		JBrowse link
G Usp39 ubiquitin specific peptidase 39 IEA KEGG rno:03040 NCBI chr 4:105,932,140...105,964,551
Ensembl chr 4:105,932,140...105,964,551 		JBrowse link
G Wbp11 WW domain binding protein 11 IEA KEGG rno:03040 NCBI chr 4:171,412,187...171,425,634
Ensembl chr 4:171,412,189...171,425,634 		JBrowse link
G Xab2 XPA binding protein 2 IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr12:6,465,569...6,477,616
Ensembl chr12:6,465,570...6,477,573 		JBrowse link
G Zmat2 zinc finger, matrin type 2 IEA KEGG rno:03040 NCBI chr18:28,683,617...28,688,252
Ensembl chr18:28,683,603...28,687,257 		JBrowse link
tRNA maturation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 ISO RGD PMID:25071838 RGD:9685342 NCBI chr 3:90,213,461...90,217,165
Ensembl chr 3:90,213,465...90,217,538 		JBrowse link
G Elac1 elaC ribonuclease Z 1 ISO RGD PMID:21572561 RGD:9685334 NCBI chr18:69,596,475...69,617,206
Ensembl chr18:69,598,827...69,616,175 		JBrowse link
G Elac2 elaC ribonuclease Z 2 ISO RGD PMID:21572561 RGD:9685334 NCBI chr10:50,131,449...50,154,755
Ensembl chr10:50,131,521...50,155,069 		JBrowse link
G Pop1 POP1 ribonuclease P/MRP subunit ISO RGD PMID:19931535 PMID:19931535 RGD:9685326, RGD:9685326 NCBI chr 7:67,590,502...67,618,187
Ensembl chr 7:67,590,522...67,618,293 		JBrowse link
G Pop4 POP4 ribonuclease P/MRP subunit ISO RGD PMID:19931535 RGD:9685326 NCBI chr 1:100,096,722...100,105,056
Ensembl chr 1:100,096,723...100,105,104 		JBrowse link
G Pop5 POP5 ribonuclease P/MRP subunit ISO RGD PMID:19931535 RGD:9685326 NCBI chr12:47,037,451...47,045,778
Ensembl chr12:47,029,403...47,042,032 		JBrowse link
G Pop7 POP7 ribonuclease P/MRP subunit ISO RGD PMID:19931535 RGD:9685326 NCBI chr12:24,826,161...24,827,202
Ensembl chr12:24,809,994...24,827,522 		JBrowse link
G Rpp14 ribonuclease P/MRP subunit p14 ISO RGD PMID:19931535 RGD:9685326 NCBI chr15:19,268,025...19,278,216
Ensembl chr15:19,266,834...19,282,122 		JBrowse link
G Rpp21 ribonuclease P subunit p21 ISO RGD PMID:19931535 RGD:9685326 NCBI chr20:1,986,225...2,025,308
Ensembl chr20:2,023,186...2,025,308 		JBrowse link
G Rpp25 ribonuclease P/MRP subunit p25 ISO RGD PMID:19931535 RGD:9685326 NCBI chr 8:66,803,262...66,804,642
Ensembl chr 8:66,803,212...66,810,550 		JBrowse link
G Rpp30 ribonuclease P/MRP subunit p30 ISO RGD PMID:19931535 RGD:9685326 NCBI chr 1:243,198,647...243,221,559
Ensembl chr 1:243,198,713...243,221,553 		JBrowse link
G Rpp38 ribonuclease P/MRP subunit p38 ISO RGD PMID:19931535 RGD:9685326 NCBI chr17:79,823,237...79,826,908
Ensembl chr17:79,822,980...79,869,245 		JBrowse link
G Rpp40 ribonuclease P/MRP subunit p40 ISO RGD PMID:19931535 RGD:9685326 NCBI chr17:29,153,203...29,162,241
Ensembl chr17:29,153,180...29,162,241 		JBrowse link
G Rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase ISO RGD PMID:25071838 RGD:9685342 NCBI chr 7:19,795,393...19,814,875
Ensembl chr 7:19,795,393...19,814,875 		JBrowse link
G Ssb small RNA binding exonuclease protection factor La ISO RGD PMID:21572561 RGD:9685334 NCBI chr 3:75,024,385...75,034,016
Ensembl chr 3:75,024,474...75,034,031 		JBrowse link
G Tsen15 tRNA splicing endonuclease subunit 15 ISO RGD PMID:25071838 RGD:9685342 NCBI chr13:67,040,134...67,055,509
Ensembl chr13:67,040,134...67,055,509 		JBrowse link
G Tsen2 tRNA splicing endonuclease subunit 2 ISO RGD PMID:25071838 RGD:9685342 NCBI chr 4:150,275,389...150,310,846
Ensembl chr 4:150,275,501...150,313,013 		JBrowse link
G Tsen34 tRNA splicing endonuclease subunit 34 ISO RGD PMID:25071838 RGD:9685342 NCBI chr 1:74,432,687...74,440,553
Ensembl chr 1:74,432,685...74,440,832 		JBrowse link
G Tsen54 tRNA splicing endonuclease subunit 54 ISO RGD PMID:25071838 RGD:9685342 NCBI chr10:101,540,479...101,549,022
Ensembl chr10:101,540,329...101,549,363 		JBrowse link

Pathway Gene Annotations

References Associated with the eukaryotic RNA polymerase transcription pathway:

Ontology Path Diagram:
paths to the root
paths to the root

Import into Pathway Studio: