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Gene: Sf3b3 (splicing factor 3b, subunit 3) Rattus norvegicus

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Symbol:

Sf3b3

Name:

splicing factor 3b, subunit 3

RGD ID:

1311636

Description:

Predicted to enable U2 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome and negative regulation of protein catabolic process. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of U2 snRNP and spliceosomal complex. Predicted to be active in nucleus. Orthologous to human SF3B3 (splicing factor 3b subunit 3); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17alpha-ethynylestradiol; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC292019; splicing factor 3B subunit 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SF3B3 (splicing factor 3b subunit 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Sf3b3 (splicing factor 3b, subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sf3b3 (splicing factor 3b subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SF3B3 (splicing factor 3b subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SF3B3 (splicing factor 3b subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sf3b3 (splicing factor 3b subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SF3B3 (splicing factor 3b subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SF3B3 (splicing factor 3b subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sf3b3 (splicing factor 3b subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Sf3b3 (splicing factor 3b subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SF3B3 (splicing factor 3b subunit 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Sf3b3 (splicing factor 3b, subunit 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sf3b3 (splicing factor 3b, subunit 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Sf3b3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RSE1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	teg-4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sf3b3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	55,692,124 - 55,729,640 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	55,692,126 - 55,729,621 (-)	Ensembl				GRCr8
mRatBN7.2	19	38,782,749 - 38,820,271 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	38,783,040 - 38,820,245 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	45,587,776 - 45,625,282 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	46,241,144 - 46,278,650 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	48,551,807 - 48,589,416 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	43,392,071 - 43,429,582 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	43,392,085 - 43,429,580 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	54,224,944 - 54,262,545 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	40,730,284 - 40,765,321 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	38,176,297 - 38,213,784 (-)	NCBI		Celera
RGSC_v3.1	19	40,735,269 - 40,770,202 (-)	NCBI
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(Z)-3-butylidenephthalide (ISO)

1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane (EXP,ISO)

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

17alpha-ethynylestradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-fluorouracil (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzatropine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

Brodifacoum (EXP)

Butylbenzyl phthalate (ISO)

clobetasol (ISO)

clozapine (ISO)

cobalt dichloride (ISO)

coumestrol (ISO)

Cuprizon (ISO)

cylindrospermopsin (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

flutamide (EXP)

FR900359 (ISO)

gentamycin (EXP)

inulin (ISO)

ivermectin (ISO)

lead(0) (ISO)

methotrexate (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

nitrates (ISO)

ozone (ISO)

p-toluidine (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (ISO)

quercetin (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

mRNA processing (IEA)

mRNA splicing, via spliceosome (IBA,IEA,ISO)

negative regulation of protein catabolic process (IEA,ISO)

RNA splicing (IEA)

Cellular Component

catalytic step 2 spliceosome (IEA,ISO)

nucleolus (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

spliceosomal complex (IEA)

U12-type spliceosomal complex (IEA,ISO)

U2 snRNP (IBA)

U2-type precatalytic spliceosome (IEA,ISO)

U2-type spliceosomal complex (IEA,ISO)

Molecular Function

nucleic acid binding (IEA)

protein binding (ISO)

protein-containing complex binding (IEA,ISO)

U2 snRNA binding (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.	Chen YI, etal., Nucleic Acids Res. 2007;35(12):3928-44. Epub 2007 May 30.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:8889548	PMID:11564863	PMID:11991638	PMID:12477932	PMID:15146077	PMID:23951410	PMID:27720643	PMID:28541300	PMID:28781166	PMID:29360106	PMID:31505169

Genomics

Comparative Map Data

Sf3b3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	55,692,124 - 55,729,640 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	55,692,126 - 55,729,621 (-)	Ensembl				GRCr8
mRatBN7.2	19	38,782,749 - 38,820,271 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	38,783,040 - 38,820,245 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	45,587,776 - 45,625,282 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	46,241,144 - 46,278,650 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	48,551,807 - 48,589,416 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	43,392,071 - 43,429,582 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	43,392,085 - 43,429,580 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	54,224,944 - 54,262,545 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	40,730,284 - 40,765,321 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	38,176,297 - 38,213,784 (-)	NCBI		Celera
RGSC_v3.1	19	40,735,269 - 40,770,202 (-)	NCBI
Cytogenetic Map	19	q12	NCBI

SF3B3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	70,523,816 - 70,577,668 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	70,523,782 - 70,577,670 (+)	Ensembl			hg38	GRCh38
GRCh37	16	70,557,719 - 70,611,571 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	69,115,202 - 69,163,702 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	69,115,201 - 69,163,701	NCBI
Celera	16	54,916,621 - 54,970,452 (-)	NCBI		Celera
Cytogenetic Map	16	q22.1	NCBI
HuRef	16	56,388,754 - 56,442,561 (+)	NCBI		HuRef
CHM1_1	16	71,965,025 - 72,018,903 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	76,334,997 - 76,388,857 (+)	NCBI		T2T-CHM13v2.0

Sf3b3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	111,537,123 - 111,573,578 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	111,536,871 - 111,573,419 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	110,810,491 - 110,846,806 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	110,810,239 - 110,846,787 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	113,334,392 - 113,370,703 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	113,697,169 - 113,733,436 (-)	NCBI		MGSCv36	mm8
Celera	8	115,034,001 - 115,070,341 (-)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	57.73	NCBI

Sf3b3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	3,307,794 - 3,357,600 (+)	Ensembl
ChiLan1.0	NW_004955484	3,307,794 - 3,357,600 (+)	NCBI	ChiLan1.0	ChiLan1.0

SF3B3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	83,591,131 - 83,639,789 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	89,520,428 - 89,569,114 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	54,442,510 - 54,490,950 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	70,361,068 - 70,409,679 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	70,361,068 - 70,410,042 (+)	Ensembl			panPan2	panpan1.1

SF3B3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	76,490,622 - 76,543,877 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	76,490,682 - 76,543,877 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	76,451,911 - 76,505,135 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	76,927,032 - 76,980,307 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	76,927,088 - 76,980,301 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	76,748,978 - 76,802,232 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	76,572,045 - 76,625,098 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	77,064,314 - 77,117,437 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sf3b3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	36,502,962 - 36,550,690 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	23,037,687 - 23,086,188 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	23,038,424 - 23,086,134 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SF3B3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	13,524,717 - 13,578,680 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	13,524,519 - 13,578,681 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	13,479,647 - 13,484,140 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SF3B3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	53,673,443 - 53,724,485 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	53,673,455 - 53,725,615 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	16,471,909 - 16,522,350 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sf3b3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	12,747,382 - 12,793,643 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	12,747,346 - 12,793,639 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sf3b3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	30,517,337 - 30,554,293 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sf3b3
242 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	70
Count of miRNA genes:	64
Interacting mature miRNAs:	65
Transcripts:	ENSRNOT00000023854
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	19220689	64220689	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	46226778	74246245	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	24093973	69093973	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat
2303628	Vencon9	Ventilatory control QTL 9		0.005	respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	19	23188586	68188586	Rat
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	44385134	74246245	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
1554318	Bmd5	Bone mineral density QTL 5	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	19	23188586	68188586	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	20109306	65109306	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	41722546	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat

Markers in Region

RH141009

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	38,783,093 - 38,783,289 (-)	MAPPER	mRatBN7.2
Rnor_6.0	19	43,429,042 - 43,429,237	NCBI	Rnor6.0
Rnor_5.0	19	54,262,005 - 54,262,200	UniSTS	Rnor5.0
RGSC_v3.4	19	40,730,629 - 40,730,824	UniSTS	RGSC3.4
Celera	19	38,176,642 - 38,176,837	UniSTS
RH 3.4 Map	19	475.3	UniSTS
Cytogenetic Map	19	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC112801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CA505966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CA512836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB706187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB767922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM083013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000023854 ⟹ ENSRNOP00000023854

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	55,692,126 - 55,729,621 (-)	Ensembl
mRatBN7.2 Ensembl	19	38,783,040 - 38,820,245 (-)	Ensembl
Rnor_6.0 Ensembl	19	43,392,085 - 43,429,580 (+)	Ensembl

RefSeq Acc Id:

NM_001106187 ⟹ NP_001099657

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	55,692,124 - 55,729,621 (-)	NCBI
mRatBN7.2	19	38,782,749 - 38,820,248 (-)	NCBI
Rnor_6.0	19	43,392,085 - 43,429,582 (+)	NCBI
Rnor_5.0	19	54,224,944 - 54,262,545 (+)	NCBI
Celera	19	38,176,297 - 38,213,784 (-)	NCBI

Sequence:

show sequence

GAAAGGCTAATGGCGGACGCCGGCGGGTTGGCAGTGGTGGTGGCTTAGGCCTTGAAGGGATTCA
GCATCCGTCGGGTATCGAAGCCATCCTTCTTGCAGCAGGCCTGCTTTGACTTGGAACTGTTGCC
ATAACCAAGACGTGACTGAGTGTCACAGCTTTGCTTGTCATCATGTTTCTGTACAACTTGACCT
TACAGCGGGCCACTGGCATCAGCTTTGCCATCCATGGCAACTTCTCTGGAACCAAACAACAGGA
AATTGTCGTTTCCCGTGGGAAGATTTTGGAGTTACTTCGCCCAGATCCTAACACTGGCAAAGTG
CATACCCTTCTCACTGTTGAAGTTTTTGGTGTTATCCGGTCACTTATGGCATTTAGGCTAACAG
GTGGCACCAAAGACTACATTGTAGTTGGCAGTGACTCAGGCCGAATTGTTATCTTGGAATACCA
GCCATCAAAGAATATGTTTGAGAAAATTCACCAAGAAACTTTCGGCAAAAGTGGATGTCGCCGT
ATTGTTCCTGGCCAGTTCTTAGCCGTGGATCCCAAAGGAAGAGCTGTTATGATTAGTGCGATTG
AGAAGCAGAAATTGGTGTATATCTTGAACAGAGACGCTGCAGCCCGACTTACCATTTCATCTCC
CCTGGAGGCCCACAAAGCAAACACTCTAGTGTACCATGTGGTTGGAGTAGATGTGGGATTTGAA
AATCCTATGTTTGCTTGTCTGGAAATGGATTATGAGGAAGCAGACAATGATCCAACAGGGGAAG
CAGCAGCCAATACCCAGCAGACACTTACTTTCTATGAATTGGACCTTGGTTTAAATCACGTGGT
TCGGAAATACAGTGAACCGTTGGAGGAACATGGCAACTTCCTTATTACAGTTCCTGGAGGGTCA
GATGGTCCAAGTGGAGTGCTGATCTGCTCTGAGAATTATATCACCTACAAGAACTTTGGTGACC
AGCCAGACATCCGATGTCCAATTCCCAGGAGACGGAATGACCTGGATGACCCTGAAAGAGGAAT
GATTTTTGTTTGCTCTGCCACCCATAAGACCAAGTCCATGTTCTTCTTTTTGGCCCAAACGGAG
CAGGGAGATATCTTTAAGATCACTTTGGAGACAGATGAAGATATGGTAACTGAGATCCGCCTCA
AGTATTTTGATACTGTTCCTGTTGCTGCTGCTATGTGTGTGCTTAAAACAGGCTTCCTTTTTGT
GGCATCAGAATTTGGAAATCATTACTTGTATCAAATTGCCCATCTTGGAGATGATGATGAAGAG
CCTGAGTTTTCATCTGCCATGCCTTTAGAAGAAGGAGACACATTCTTCTTTCAGCCGAGACCAC
TCAAAAATCTCGTGCTGGTGGATGAACTGGACAGCCTCTCTCCTATTCTCTTTTGCCAGATAGC
TGATTTGGCCAATGAAGACACTCCACAGCTGTATGTAGCCTGTGGTAGGGGACCCCGGTCGTCT
CTGAGAGTCTTAAGACATGGACTTGAGGTGTCGGAAATGGCTGTTTCTGAGCTCCCTGGTAACC
CCAATGCTGTCTGGACTGTCCGTCGGCACATTGAAGATGAGTTTGATGCCTACATCATTGTGTC
TTTCGTGAATGCCACGCTGGTGCTGTCCATCGGAGAGACTGTGGAAGAAGTGACAGACTCCGGG
TTCTTGGGTACCACTCCAACCTTGTCCTGTTCCTTATTGGGAGATGACGCGTTGGTGCAGGTGT
ATCCAGATGGCATTCGACACATCCGAGCAGACAAGAGAGTCAATGAGTGGAAGACTCCTGGCAA
GAAGACAATTGTGAAGTGTGCAGTGAACCAGCGACAAGTGGTGATCGCCTTGACTGGGGGAGAG
CTGGTCTATTTCGAGATGGATCCTTCAGGACAGTTGAATGAGTACACGGAGCGGAAAGAAATGT
CAGCAGATGTGGTGTGCATGAGTCTGGCCAACGTACCCCCTGGAGAACAGCGGTCTCGGTTCCT
GGCTGTGGGGCTGGTGGACAACACTGTCAGAATCATCTCCCTTGACCCATCAGACTGTTTGCAG
CCTCTGAGTATGCAGGCTCTCCCAGCCCAGCCTGAGTCTCTGTGTATTGTGGAAATGGGTGGGA
CCGAGAAACAAGATGAGCTGGGTGAGAGGGGCTCTATCGGCTTCCTGTACCTGAACATTGGACT
CCAGAACGGTGTGCTGCTGAGGACTGTCCTAGACCCTGTTACTGGGGACCTGTCTGACACCCGC
ACTAGGTATCTGGGGTCCCGTCCTGTGAAGCTCTTTCGGGTTCGGATGCAAGGCCAGGAGGCTG
TTCTGGCTATGTCTAGTCGCTCATGGCTGAGCTACTCTTACCAGTCTCGATTCCATCTCACCCC
TCTGTCTTATGAGACCCTGGAATTTGCATCGGGCTTTGCCTCTGAACAGTGTCCTGAAGGCATC
GTTGCCATCTCCACCAACACTTTGAGGATTTTGGCACTAGAGAAGCTTGGCGCTGTCTTCAATC
AAGTGGCCTTTCCTTTGCAGTACACACCCAGGAAGTTTGTCATCCACCCTGAGAGTAACAACCT
TATCATCATAGAGACGGATCACAATGCCTACACTGAGGCTACAAAAGCTCAGAGAAAGCAGCAG
ATGGCTGAGGAAATGGTAGAAGCAGCAGGGGAGGATGAACGGGAGCTGGCTGCAGAGATGGCAG
CCGCGTTCCTCAATGAAAACCTCCCAGAATCCATTTTCGGAGCTCCCAAGGCTGGCAATGGGCA
GTGGGCCTCTGTGATTCGGGTAATGAACCCTATCCAGGGGAATACACTAGACCTTGTCCAGCTG
GAGCAGAATGAGGCAGCCTTTAGTGTGGCAGTGTGTAGGTTCTCCAACACTGGTGAAGACTGGT
ATGTGCTGGTTGGTGTTGCTAAGGACTTGATCCTGAGCCCTCGGTCTGTGGCAGGGGGCTTTGT
GTATACATACAAGCTTGTGAACAATGGGGAAAAGTTGGAGTTTTTGCACAAGACTCCAGTGGAA
GAAGTCCCTGCTGCCATTGCCCCATTCCAGGGGAGGGTACTGATTGGTGTGGGGAAACTTTTAC
GAGTCTATGACCTGGGGAAGAAGAAGTTACTTCGAAAGTGTGAGAATAAGCATATTGCCAACTA
CATATCAGGGATCCAGACAATTGGTCACAGGGTAATCGTGTCTGATGTCCAGGAAAGTTTCATC
TGGGTTCGCTACAAGCGTAATGAGAACCAGCTCATTATCTTTGCTGATGACACCTATCCCAGAT
GGGTCACCACTGCCAGCCTTCTCGACTATGATACTGTGGCTGGGGCAGACAAGTTTGGCAACAT
TTGTGTGGTGAGGCTCCCACCTAACACCAACGATGAGGTGGATGAAGATCCCACTGGAAACAAA
GCCCTGTGGGACCGGGGCTTGCTCAATGGGGCTTCACAGAAGGCAGAGGTCATCATGAACTACC
ACGTTGGGGAGACAGTGCTGTCGTTGCAGAAGACCACACTGATCCCTGGAGGCTCAGAATCACT
TGTCTATACCACTTTATCTGGAGGAATTGGCATCCTTGTCCCTTTCACGTCTCATGAGGACCAC
GACTTTTTCCAGCATGTTGAGATGCACCTGCGGTCTGAGCATCCTCCTCTCTGTGGACGGGACC
ACCTCAGCTTTCGTTCTTATTATTTCCCTGTTAAGAATGTGATTGATGGAGACCTTTGTGAGCA
GTTCAACTCCATGGAGCCCAACAAGCAGAAAAATGTCTCTGAAGAGCTGGACCGAACCCCACCT
GAAGTGTCCAAGAAGCTTGAGGATATTCGGACCCGCTATGCTTTCTGAATCCATCGTTGTCGGG
GGGCTCGCCAGAGAGCCCCTCTTGTTTCCATCACTGGTGTCTGGCTCTTGCCACACAGCAGGAG
AAAGTGGTGTAGCGTTTAAGACTGCAGCTGAACGCCTGGTCCCCTCAGTTGGCACTGGGGTCTG
CTCCTTCACATAGTGTGTGGCCCTGCGCTTCGGCGTGGAACTCCGTATTCCTTATTCCCAAAGC
CGCCCCTGCATGTGTGATTTCTGGCTCTTGTCTACTTTTGTACACATTCTTAATTCTCATTTTG
TTTTCCTGTAAATACAGTTTTGTACAATGTTGCTTTGTAAGGCGGAGGGAGACAGGCTAAGGTG
TTGCAGTGTGGCTCAGCCCTGCCCTCTGAACCCTCCTGGATATATAAAACTAGTTTTTAAGGTG
TCCAGCATGCCTGTAGTTTTTTGTTGTTTCTTAGTTCTTTCCTGGGGATGAGAATTCTGGAGAG
AGGCTTGAGCCCAGATTAGAACAATAATTGGATCTTTTACTTCTTGGTTCTTTACATCATGGCT
CTAGTGGTTTCTTAGCATGTCTTGGTTCTTTGCTGTGGAGGTAGAACATGAGCTCACCCCACTA
CTCATGGATGTTGAAGGGGCTGCTTCCCTCCCCCTCAGGTTTTTACCACTGTGAAATCTTAGAA
TATTAAATTTGGCACAATTCCCAGTTAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006255620 ⟹ XP_006255682

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	55,692,401 - 55,729,640 (-)	NCBI
mRatBN7.2	19	38,783,026 - 38,820,271 (-)	NCBI
Rnor_6.0	19	43,392,071 - 43,429,305 (+)	NCBI
Rnor_5.0	19	54,224,944 - 54,262,545 (+)	NCBI

Sequence:

show sequence

CGAAGGCCCATCGTGAAAGGCTAATGGCGGACGCCGGCGGGTTGGCAGTGGTGGTGGCTTAGGC
CTTGAAGGGATTCAGCATCCGTCGGGTATCGAAGCCATCCTTCTTGCAGCAGGGTAAAGAAGTG
GCCTCACAGTTTCTCTGTAGCGGAGGAAGTGGAGAGCGATCACAGGAGAGAGCTGCCCGGCACT
TTGGCGGGAGCCACAGAAGCAGTTTTAGGCCCGAGTGGTTCGCCTGCTTTGACTTGGAACTGTT
GCCATAACCAAGACGTGACTGAGTGTCACAGCTTTGCTTGTCATCATGTTTCTGTACAACTTGA
CCTTACAGCGGGCCACTGGCATCAGCTTTGCCATCCATGGCAACTTCTCTGGAACCAAACAACA
GGAAATTGTCGTTTCCCGTGGGAAGATTTTGGAGTTACTTCGCCCAGATCCTAACACTGGCAAA
GTGCATACCCTTCTCACTGTTGAAGTTTTTGGTGTTATCCGGTCACTTATGGCATTTAGGCTAA
CAGGTGGCACCAAAGACTACATTGTAGTTGGCAGTGACTCAGGCCGAATTGTTATCTTGGAATA
CCAGCCATCAAAGAATATGTTTGAGAAAATTCACCAAGAAACTTTCGGCAAAAGTGGATGTCGC
CGTATTGTTCCTGGCCAGTTCTTAGCCGTGGATCCCAAAGGAAGAGCTGTTATGATTAGTGCGA
TTGAGAAGCAGAAATTGGTGTATATCTTGAACAGAGACGCTGCAGCCCGACTTACCATTTCATC
TCCCCTGGAGGCCCACAAAGCAAACACTCTAGTGTACCATGTGGTTGGAGTAGATGTGGGATTT
GAAAATCCTATGTTTGCTTGTCTGGAAATGGATTATGAGGAAGCAGACAATGATCCAACAGGGG
AAGCAGCAGCCAATACCCAGCAGACACTTACTTTCTATGAATTGGACCTTGGTTTAAATCACGT
GGTTCGGAAATACAGTGAACCGTTGGAGGAACATGGCAACTTCCTTATTACAGTTCCTGGAGGG
TCAGATGGTCCAAGTGGAGTGCTGATCTGCTCTGAGAATTATATCACCTACAAGAACTTTGGTG
ACCAGCCAGACATCCGATGTCCAATTCCCAGGAGACGGAATGACCTGGATGACCCTGAAAGAGG
AATGATTTTTGTTTGCTCTGCCACCCATAAGACCAAGTCCATGTTCTTCTTTTTGGCCCAAACG
GAGCAGGGAGATATCTTTAAGATCACTTTGGAGACAGATGAAGATATGGTAACTGAGATCCGCC
TCAAGTATTTTGATACTGTTCCTGTTGCTGCTGCTATGTGTGTGCTTAAAACAGGCTTCCTTTT
TGTGGCATCAGAATTTGGAAATCATTACTTGTATCAAATTGCCCATCTTGGAGATGATGATGAA
GAGCCTGAGTTTTCATCTGCCATGCCTTTAGAAGAAGGAGACACATTCTTCTTTCAGCCGAGAC
CACTCAAAAATCTCGTGCTGGTGGATGAACTGGACAGCCTCTCTCCTATTCTCTTTTGCCAGAT
AGCTGATTTGGCCAATGAAGACACTCCACAGCTGTATGTAGCCTGTGGTAGGGGACCCCGGTCG
TCTCTGAGAGTCTTAAGACATGGACTTGAGGTGTCGGAAATGGCTGTTTCTGAGCTCCCTGGTA
ACCCCAATGCTGTCTGGACTGTCCGTCGGCACATTGAAGATGAGTTTGATGCCTACATCATTGT
GTCTTTCGTGAATGCCACGCTGGTGCTGTCCATCGGAGAGACTGTGGAAGAAGTGACAGACTCC
GGGTTCTTGGGTACCACTCCAACCTTGTCCTGTTCCTTATTGGGAGATGACGCGTTGGTGCAGG
TGTATCCAGATGGCATTCGACACATCCGAGCAGACAAGAGAGTCAATGAGTGGAAGACTCCTGG
CAAGAAGACAATTGTGAAGTGTGCAGTGAACCAGCGACAAGTGGTGATCGCCTTGACTGGGGGA
GAGCTGGTCTATTTCGAGATGGATCCTTCAGGACAGTTGAATGAGTACACGGAGCGGAAAGAAA
TGTCAGCAGATGTGGTGTGCATGAGTCTGGCCAACGTACCCCCTGGAGAACAGCGGTCTCGGTT
CCTGGCTGTGGGGCTGGTGGACAACACTGTCAGAATCATCTCCCTTGACCCATCAGACTGTTTG
CAGCCTCTGAGTATGCAGGCTCTCCCAGCCCAGCCTGAGTCTCTGTGTATTGTGGAAATGGGTG
GGACCGAGAAACAAGATGAGCTGGGTGAGAGGGGCTCTATCGGCTTCCTGTACCTGAACATTGG
ACTCCAGAACGGTGTGCTGCTGAGGACTGTCCTAGACCCTGTTACTGGGGACCTGTCTGACACC
CGCACTAGGTATCTGGGGTCCCGTCCTGTGAAGCTCTTTCGGGTTCGGATGCAAGGCCAGGAGG
CTGTTCTGGCTATGTCTAGTCGCTCATGGCTGAGCTACTCTTACCAGTCTCGATTCCATCTCAC
CCCTCTGTCTTATGAGACCCTGGAATTTGCATCGGGCTTTGCCTCTGAACAGTGTCCTGAAGGC
ATCGTTGCCATCTCCACCAACACTTTGAGGATTTTGGCACTAGAGAAGCTTGGCGCTGTCTTCA
ATCAAGTGGCCTTTCCTTTGCAGTACACACCCAGGAAGTTTGTCATCCACCCTGAGAGTAACAA
CCTTATCATCATAGAGACGGATCACAATGCCTACACTGAGGCTACAAAAGCTCAGAGAAAGCAG
CAGATGGCTGAGGAAATGGTAGAAGCAGCAGGGGAGGATGAACGGGAGCTGGCTGCAGAGATGG
CAGCCGCGTTCCTCAATGAAAACCTCCCAGAATCCATTTTCGGAGCTCCCAAGGCTGGCAATGG
GCAGTGGGCCTCTGTGATTCGGGTAATGAACCCTATCCAGGGGAATACACTAGACCTTGTCCAG
CTGGAGCAGAATGAGGCAGCCTTTAGTGTGGCAGTGTGTAGGTTCTCCAACACTGGTGAAGACT
GGTATGTGCTGGTTGGTGTTGCTAAGGACTTGATCCTGAGCCCTCGGTCTGTGGCAGGGGGCTT
TGTGTATACATACAAGCTTGTGAACAATGGGGAAAAGTTGGAGTTTTTGCACAAGACTCCAGTG
GAAGAAGTCCCTGCTGCCATTGCCCCATTCCAGGGGAGGGTACTGATTGGTGTGGGGAAACTTT
TACGAGTCTATGACCTGGGGAAGAAGAAGTTACTTCGAAAGTGTGAGAATAAGCATATTGCCAA
CTACATATCAGGGATCCAGACAATTGGTCACAGGGTAATCGTGTCTGATGTCCAGGAAAGTTTC
ATCTGGGTTCGCTACAAGCGTAATGAGAACCAGCTCATTATCTTTGCTGATGACACCTATCCCA
GATGGGTCACCACTGCCAGCCTTCTCGACTATGATACTGTGGCTGGGGCAGACAAGTTTGGCAA
CATTTGTGTGGTGAGGCTCCCACCTAACACCAACGATGAGGTGGATGAAGATCCCACTGGAAAC
AAAGCCCTGTGGGACCGGGGCTTGCTCAATGGGGCTTCACAGAAGGCAGAGGTCATCATGAACT
ACCACGTTGGGGAGACAGTGCTGTCGTTGCAGAAGACCACACTGATCCCTGGAGGCTCAGAATC
ACTTGTCTATACCACTTTATCTGGAGGAATTGGCATCCTTGTCCCTTTCACGTCTCATGAGGAC
CACGACTTTTTCCAGCATGTTGAGATGCACCTGCGGTCTGAGCATCCTCCTCTCTGTGGACGGG
ACCACCTCAGCTTTCGTTCTTATTATTTCCCTGTTAAGAATGTGATTGATGGAGACCTTTGTGA
GCAGTTCAACTCCATGGAGCCCAACAAGCAGAAAAATGTCTCTGAAGAGCTGGACCGAACCCCA
CCTGAAGTGTCCAAGAAGCTTGAGGATATTCGGACCCGCTATGCTTTCTGAATCCATCGTTGTC
GGGGGGCTCGCCAGAGAGCCCCTCTTGTTTCCATCACTGGTGTCTGGCTCTTGCCACACAGCAG
GAGAAAGTGGTGTAGCGTTTAAGACTGCAGCTGAACGCCTGGTCCCCTCAGTTGGCACTGGGGT
CTGCTCCTTCACATAGTGTGTGGCCCTGCGCTTCGGCGTGGAACTCCGTATTCCTTATTCCCAA
AGCCGCCCCTGCATGTGTGATTTCTGGCTCTTGTCTACTTTTGTACACATTCTTAATTCTCATT
TTGTTTTCCTGTAAATACAGTTTTGTACAATGTTGCTTTGTAAGGCGGAGGGAGACAGGCTAAG
GTGTTGCAGTGTGGCTCAGCCCTGCCCTCTGAACCCTCCTGGATATATAAAACTAGTTTTTAAG
GTGTCCAGCA

hide sequence

RefSeq Acc Id:

XM_063277936 ⟹ XP_063134006

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	55,692,401 - 55,729,637 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099657	(Get FASTA)	NCBI Sequence Viewer
	XP_006255682	(Get FASTA)	NCBI Sequence Viewer
	XP_063134006	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68883	(Get FASTA)	NCBI Sequence Viewer
	EDL92549	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000023854
	ENSRNOP00000023854.6

RefSeq Acc Id:

NP_001099657 ⟸ NM_001106187

- UniProtKB:

E9PT66 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIRS
LMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQFLAVDPKGR
AVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEA
DNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPGGSDGPSGVLICSENYI
TYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITLETDED
MVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDT
FFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMA
VSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLG
DDALVQVYPDGIRHIRADKRVNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNE
YTERKEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESL
CIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRV
RMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALE
KLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDER
ELAAEMAAAFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRF
SNTGEDWYVLVGVAKDLILSPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIF
ADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQK
AEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEH
PPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIRTRYA
F

hide sequence

RefSeq Acc Id:	XP_006255682 ⟸ XM_006255620
- Peptide Label:	isoform X1
- UniProtKB:	E9PT66 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIRS LMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQFLAVDPKGR AVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEA DNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPGGSDGPSGVLICSENYI TYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITLETDED MVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDT FFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMA VSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLG DDALVQVYPDGIRHIRADKRVNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNE YTERKEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESL CIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRV RMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALE KLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDER ELAAEMAAAFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRF SNTGEDWYVLVGVAKDLILSPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIF ADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQK AEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEH PPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIRTRYA F hide sequence

Ensembl Acc Id:

ENSRNOP00000023854 ⟸ ENSRNOT00000023854

RefSeq Acc Id:	XP_063134006 ⟸ XM_063277936
- Peptide Label:	isoform X1
- UniProtKB:	E9PT66 (UniProtKB/TrEMBL)

Protein Domains

Cleavage/polyadenylation specificity factor A RSE1/DDB1/CPSF1 first beta-propeller

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-E9PT66-F1-model_v2	AlphaFold	E9PT66	1-1217	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701146

Promoter ID:

EPDNEW_R11670

Type:

multiple initiation site

Name:

Sf3b3_1

Description:

splicing factor 3b, subunit 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	43,392,080 - 43,392,140	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311636	AgrOrtholog
BioCyc Gene	G2FUF-5684	BioCyc
Ensembl Genes	ENSRNOG00000017724	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000023854	ENTREZGENE
	ENSRNOT00000023854.8	UniProtKB/TrEMBL
Gene3D-CATH	1.10.150.910	UniProtKB/TrEMBL
	2.130.10.10	UniProtKB/TrEMBL
InterPro	Cleavage/polyA-sp_fac_asu_C	UniProtKB/TrEMBL
	Cleavage/polyA-sp_fac_asu_N	UniProtKB/TrEMBL
	RSE1/DDB1/CFT1/CPSF1	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:292019	UniProtKB/TrEMBL
NCBI Gene	292019	ENTREZGENE
PANTHER	DNA REPAIR/RNA PROCESSING CPSF FAMILY	UniProtKB/TrEMBL
Pfam	Beta-prop_RSE1_2nd	UniProtKB/TrEMBL
	CPSF_A	UniProtKB/TrEMBL
	MMS1_N	UniProtKB/TrEMBL
PhenoGen	Sf3b3	PhenoGen
RatGTEx	ENSRNOG00000017724	RatGTEx
Superfamily-SCOP	SSF50978	UniProtKB/TrEMBL
UniProt	B5DF12_RAT	UniProtKB/TrEMBL
	E9PT66	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Sf3b3	splicing factor 3b, subunit 3	Sf3b3_predicted	splicing factor 3b, subunit 3 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Sf3b3_predicted	splicing factor 3b, subunit 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - KEGG (archival)