Srsf7 (serine and arginine rich splicing factor 7)

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Gene: Srsf7 (serine and arginine rich splicing factor 7) Rattus norvegicus

Analyze

Symbol:

Srsf7

Name:

serine and arginine rich splicing factor 7

RGD ID:

1307425

Description:

Predicted to have RNA binding activity and protein domain specific binding activity. Predicted to be involved in cellular response to leukemia inhibitory factor; mRNA cis splicing, via spliceosome; and regulation of mRNA splicing, via spliceosome. Predicted to localize to nuclear speck. Orthologous to human SRSF7 (serine and arginine rich splicing factor 7); PARTICIPATES IN spliceosome pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,4-dibromophenyl 2,4,5-tribromophenyl ether.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

LOC362687; MGC116344; serine/arginine-rich splicing factor 7; Sfrs7; splicing factor, arginine/serine-rich 7; splicing factor, arginine/serine-rich 7, 35kDa

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	6	2,879,312 - 2,886,505 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	2,880,518 - 2,886,465 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	2,856,205 - 2,863,398 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	3,101,772 - 3,104,433 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	3,098,484 - 3,104,488 (-)	NCBI
Celera	6	14,488,763 - 14,494,964 (+)	NCBI		Celera
Cytogenetic Map	6	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

clear cell renal cell carcinoma (ISO)

Glomerular Hyperfiltration (ISO)

RASopathy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3-dimethoxynaphthalene-1,4-dione (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (EXP)

2-methylcholine (ISO)

4-(ethoxymethylene)-2-phenyloxazol-5-one (ISO)

4-hydroxyphenyl retinamide (ISO)

5-azacytidine (ISO)

6-propyl-2-thiouracil (EXP)

afimoxifene (ISO)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (ISO)

beauvericin (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bucladesine (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

chromium atom (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

dioxygen (ISO)

disodium selenite (ISO)

dorsomorphin (ISO)

elemental selenium (ISO)

enniatin (ISO)

ethanol (ISO)

folic acid (ISO)

gold atom (ISO)

gold(0) (ISO)

hydrogen peroxide (ISO)

medroxyprogesterone acetate (ISO)

mercury atom (ISO)

mercury(0) (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N-methyl-N'-nitro-N-nitrosoguanidine (ISO)

nonanoic acid (ISO)

paracetamol (ISO)

paraquat (ISO)

pentachlorophenol (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

piroxicam (ISO)

poly(I:C) (EXP)

potassium dichromate (ISO)

prednisolone (ISO)

propiconazole (ISO)

quercetin (ISO)

raloxifene (ISO)

SB 431542 (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

succimer (ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

thapsigargin (ISO)

toluene 2,4-diisocyanate (ISO)

trichostatin A (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

vitamin E (ISO)

vorinostat (ISO)

Yessotoxin (ISO)

zinc sulfate (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

cellular response to leukemia inhibitory factor (ISO)

mRNA cis splicing, via spliceosome (IBA)

negative regulation of mRNA splicing, via spliceosome (ISO)

regulation of alternative mRNA splicing, via spliceosome (IBA)

RNA splicing (ISO)

Cellular Component

cellular_component (ND)

nuclear speck (IBA)

nucleoplasm (ISO)

Molecular Function

molecular_function (ND)

protein binding (ISO)

protein domain specific binding (ISO)

RNA binding (IBA)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (ISO)

References

References - curated


1.	Chen YI, etal., Nucleic Acids Res. 2007;35(12):3928-44. Epub 2007 May 30.
2.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	GOA data from the GO Consortium
4.	MGD data from the GO Consortium
5.	Piekielko-Witkowska A, etal., PLoS One. 2010 Oct 27;5(10):e13690. doi: 10.1371/journal.pone.0013690.
6.	RGD automated data pipeline
7.	RGD automated import pipeline for gene-chemical interactions
8.	RGD comprehensive gene curation
9.	Wahl MC, etal., Cell. 2009 Feb 20;136(4):701-18. doi: 10.1016/j.cell.2009.02.009.
10.	Zhang H, etal., Kidney Int 1999 Aug;56(2):549-58.

Additional References at PubMed

PMID:8013463	PMID:10749975	PMID:12477932	PMID:15009664	PMID:18570454	PMID:20439489	PMID:22658674	PMID:22681889	PMID:23376485	PMID:24625528	PMID:25931508

Genomics

Comparative Map Data

Srsf7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	6	2,879,312 - 2,886,505 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	2,880,518 - 2,886,465 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	2,856,205 - 2,863,398 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	3,101,772 - 3,104,433 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	3,098,484 - 3,104,488 (-)	NCBI
Celera	6	14,488,763 - 14,494,964 (+)	NCBI		Celera
Cytogenetic Map	6	q11	NCBI

SRSF7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	38,743,599 - 38,751,494 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	38,743,599 - 38,751,494 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	38,970,741 - 38,978,636 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	38,824,245 - 38,832,005 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	2	38,882,393 - 38,890,102	NCBI
Celera	2	38,811,778 - 38,819,677 (-)	NCBI
Cytogenetic Map	2	p22.1	NCBI
HuRef	2	38,709,469 - 38,717,368 (-)	NCBI		HuRef
CHM1_1	2	38,901,397 - 38,909,294 (-)	NCBI		CHM1_1

Srsf7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	80,507,509 - 80,514,798 (-)	NCBI	GRCm39		mm39
GRCm38	17	80,200,080 - 80,207,369 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	80,200,080 - 80,207,307 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	80,599,420 - 80,606,625 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	17	80,108,406 - 80,115,615 (-)	NCBI			mm8
Celera	17	84,516,534 - 84,523,817 (-)	NCBI		Celera
Cytogenetic Map	17	E3	NCBI

Srsf7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955441	6,416,952 - 6,423,074 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955441	6,416,709 - 6,423,185 (-)	NCBI	ChiLan1.0	ChiLan1.0

SRSF7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2A	39,536,722 - 39,545,562 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	39,536,731 - 39,545,562 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2A	38,780,879 - 38,787,470 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

SRSF7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	17	30,809,951 - 30,816,218 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	17	30,809,743 - 30,816,269 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Srsf7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936508	12,475,906 - 12,481,501 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SRSF7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	101,603,705 - 101,613,241 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	101,599,429 - 101,608,786 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	107,748,195 - 107,753,395 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SRSF7
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	68,629,812 - 68,636,958 (+)	NCBI

Srsf7
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624738	20,251,876 - 20,259,794 (-)	NCBI

Position Markers

Sfrs7

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	6	2,884,039 - 2,885,213	NCBI	Rnor6.0
Rnor_5.0	6	2,860,932 - 2,862,106	UniSTS	Rnor5.0
RGSC_v3.4	6	3,102,017 - 3,103,191	UniSTS	RGSC3.4
Celera	6	14,490,269 - 14,491,443	UniSTS
Cytogenetic Map	6	q11	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598843	Cm63	Cardiac mass QTL 63	2.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	1	23620518	Rat
1578758	Tcas9	Tongue tumor susceptibility QTL 9	3.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	6	1	25048718	Rat
738023	Alc17	Alcohol consumption QTL 17	3.1	0.003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	6	1	35623029	Rat
1354616	Despr12	Despair related QTL 12		0.0012	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	6	1	35623029	Rat
1549905	Stresp10	Stress response QTL 10	6.83	0.0066	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	6	1	35623029	Rat
2300176	Bmd51	Bone mineral density QTL 51	11.7	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	6	1	35623029	Rat
2300190	Bmd52	Bone mineral density QTL 52	11.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	6	1	35623029	Rat
1331743	Uae28	Urinary albumin excretion QTL 28	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	1	41917988	Rat
9589048	Scfw3	Subcutaneous fat weight QTL 3	4.57	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	6	1	42388212	Rat
9589129	Insul24	Insulin level QTL 24	19.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	6	1	42388212	Rat
7411603	Foco13	Food consumption QTL 13	5.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	42388212	Rat
7411542	Bw127	Body weight QTL 127	5.5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	1	42388212	Rat
8552962	Pigfal16	Plasma insulin-like growth factor 1 level QTL 16	9.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	1	42388212	Rat
2293709	Bss23	Bone structure and strength QTL 23	5.18	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	6	1	43665660	Rat
2293650	Bss31	Bone structure and strength QTL 31	5.05	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	6	1	43665660	Rat
2293656	Bss28	Bone structure and strength QTL 28	6.79	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	6	1	43665660	Rat
7411584	Foco4	Food consumption QTL 4	4.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	44015370	Rat
738024	Sach5	Saccharine consumption QTL 5	3.9	0.00039	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	6	1	44570292	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	75623393	Rat
8693645	Alc31	Alcohol consumption QTL 31	3.7	0.038	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	6	135053	23600274	Rat
1359023	Bp272	Blood pressure QTL 272	2.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	1120393	28706721	Rat
2292589	Emca10	Estrogen-induced mammary cancer QTL 10		0.048	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	1120393	46120393	Rat
1354664	Slep2	Serum leptin concentration QTL 2	4.49		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	6	1120393	75023446	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	2537030	111715717	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	259
Count of miRNA genes:	184
Interacting mature miRNAs:	204
Transcripts:	ENSRNOT00000038448
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001039035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AABR07062677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01041871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01041872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC099175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM079490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM084661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM085512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM092264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000038448 ⟹ ENSRNOP00000035155

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	2,880,518 - 2,886,465 (-)	Ensembl

RefSeq Acc Id:

NM_001039035 ⟹ NP_001034124

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	2,880,518 - 2,886,465 (-)	NCBI
Rnor_5.0	6	2,856,205 - 2,863,398 (-)	NCBI
RGSC_v3.4	6	3,101,772 - 3,104,433 (-)	RGD
Celera	6	14,488,763 - 14,494,964 (+)	NCBI

Sequence:

show sequence

GCCGGGATCACTGGCAGAGGAGGTTGTGTAGCCGCTTCCGTGCTACTCGCGCTGTGAGCATTGC
AAGCTAGAGCCGAGTACGCGGGCCGGCCATCATGTCACGTTACGGGCGGTATGGAGGAGAAACC
AAGGTATATGTTGGTAACCTGGGAACTGGCGCTGGTAAAGGAGAGTTAGAAAGGGCATTCAGTT
ACTATGGGCCCTTAAGAACTGTATGGATTGCCAGAAATCCTCCAGGATTTGCCTTTGTGGAATT
TGAAGACCCTAGAGATGCAGAGGATGCAGTTCGAGGATTGGATGGGAAAGTGATTTGTGGTTCT
CGAGTGAGGGTTGAATTATCAACAGGCATGCCTCGGAGATCTCGGTTTGATAGGCCACCTGCCC
GTCGTCCCTTTGATCCTAATGATAGATGCTATGAGTGTGGTGAAAAGGGACATTATGCTTATGA
CTGTCATCGCTATAGCCGACGAAGAAGAAGCAGGTCACGATCTAGATCACATTCCCGATCCAGG
GGAAGGCGATACTCTCGCTCACGTAGTAGGAGCCGCGGTAGGAGGTCAAGATCAGCATCTCCTC
GACGATCAAGGTCCGTGTCTCTTCGTAGATCAAGATCAGCTTCACTCAGAAGATCTAGGTCTGG
TTCTATAATAGGATCGAGGTATTTCCAATCCCGCTCAAGGTCGAGATCAAGATCCAGGTCTATT
TCACGACCAAGAAGCAGCCGATCAAAATCCAGATCTCCATCTCCTAAAAGAAGTCGTTCCCCAT
CAGGAAGTCCACACAGAAGTGCAAGTCCAGAAAGAATGGACTGAAGTTCTCAAGTTCACCCGTT
AGGGAAAAGTTATTTTGTTTACATTATTATAAGGGATTTGTTATGTCTGTAAAGTGTAACCTAG
GAAGGTTCATCAACCATCTAATCAAAATGGATCTGGATTATTACTCTGTAAAATTCACAGCAGT
AAATATTGTTTTTGTTGAATGTATTAACATCTTATGGTCTGGAAATGTAGGTTTTTATTTGACA
CATTTAAATAAAATGTTTCTAACTAGA

hide sequence

RefSeq Acc Id:

XM_006239642 ⟹ XP_006239704

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	2,879,312 - 2,886,505 (-)	NCBI
Rnor_5.0	6	2,856,205 - 2,863,398 (-)	NCBI

Sequence:

show sequence

GCATATATAAGCTCGAATCCGGCCTCTTCCTTGTAGTGCCGCCGGGATCACTGGCAGAGGAGGT
TGTGTAGCCGCTTCCGTGCTACTCGCGCTGTGAGCATTGCAAGCTAGAGCCGAGTACGCGGGCC
GGCCATCATGTCACGTTACGGGCGGTATGGAGGAGAAACCAAGGTATATGTTGGTAACCTGGGA
ACTGGCGCTGGTAAAGGAGAGTTAGAAAGGGCATTCAGTTACTATGGGCCCTTAAGAACTGTAT
GGATTGCCAGAAATCCTCCAGGATTTGCCTTTGTGGAATTTGAAGACCCTAGAGATGCAGAGGA
TGCAGTTCGAGGATTGGATGGGAAAGTGATTTGTGGTTCTCGAGTGAGGGTTGAATTATCAACA
GGCATGCCTCGGAGATCTCGGTTTGATAGGCCACCTGCCCGTCGTCCCTTTGATCCTAATGATA
GATGCTATGAGTGTGGTGAAAAGGGACATTATGCTTATGACTGTCATCGCTATAGCCGACGAAG
AAGAAGCAGGTCACGATCTAGATCACATTCCCGATCCAGGGGAAGGCGATACTCTCGCTCACGT
AGTAGGAGCCGCGGTAGGAGGTCAAGATCAGCATCTCCTCGACGATCAAGGTCCGTGTCTCTTC
GTAGATCAAGATCAGCTTCACTCAGAAGATCTAGGTCTGGTTCTATAATAGGATCGAGATCCCG
CTCAAGGTCGAGATCAAGATCCAGGTCTATTTCACGACCAAGAAGCAGCCGATCAAAATCCAGA
TCTCCATCTCCTAAAAGAAGTCGTTCCCCATCAGGAAGTCCACACAGAAGTGCAAGTCCAGAAA
GAATGGACTGAAGTTCTCAAGTTCACCCGTTAGGGAAAAGTTATTTTGTTTACATTATTATAAG
GGATTTGTTATGTCTGTAAAGTGTAACCTAGGAAGGTTCATCAACCATCTAATCAAAATGGATC
TGGATTATTACTCTGTAAAATTCACAGCAGTAAATATTGTTTTTGTTGAATGTATTAACATCTT
ATGGTCTGGAAATGTAGGTTTTTATTTGACACATTTAAATAAAATGTTTCTAACTAGATGTTTT
GATTTGTGTTCAATATTAATACTTTTTCAATTGGGTAAGCATCAGACAAGTTTAACAATCAAGA
AAATTGTTATTGACCATATTTCTATGGCCTGTATTCAAAGTTTAATGGTGTTGGTTAAGTATTA
AACATCATTAACTGTTCTATACATAGCACAGGCCAGGATCTGAAAGGACTTTGACATTTTCATT
TTACTCTTGTACCTTGGGTAAGATGATCTTTGAGTCCTCTTAAGAGCATGAGTGCATCATGGCA
GATCCCTAATTAACTGGGAATTGGTGTTAACAATCTCAAACTGTCAAGCTCAGAGGGACCACTG
ACAGGAAATAAGCAGAGTTACTGAAATGTCAAGAAGTAGAAACTGGTTTTTAGAGGCTGAGGTT
TTAGTAGTATAGTTTTTCAGACTATTTAAGTTGGGATGATTCTGGTCAATGTACTTTTTTTTCC
CTTTCAAACAGCCAATTTAATACCAAAAAATGCATGTTTGAGGAATTGTCTGAATTTGGAACAA
AACCTTGTAAACCAGCTTTGCAAAATTATTCAGCCCCAATATTCTGTTCTTTTGAATGGATTGC
CTTATCCTGTGCAAAAACCTGTTACTATCTGAGCTAGATTTTGCAGTTACTGACGACATTGTTC
TATTTTGCCAAGCTGGTATAAAGAAATGTCAAGCAAAAATGTAAAAGACAAAGCAGTTTTGTAA
ACCTTACATATTAGCATTTCATGTAGCTAAGGTTTGTTACGTTTTTGTTTTGGGTTTTTCCTCC
TTTGGTAGTGTCTGGTAGACCTTAGAATGGTGTAGACAGTAGGTTCTTATTCAGACTTTAAATA
TATTATGCATAATAGGGCAGTAATGATCATTTTCGAGTTTTTTGGACAAGCTTTTTACTATATT
TCTTAGCCTTGGTGTAAAAATAATAGTACAGGAGTCTGTCCTTGTCTATATTTTAGGCTTTTTC
AATGAAGTTGTCTAATAGTACTGCAACTTGAATGCATACTGGTCTGCCCCAAGTTTATCTGGCT
GAGTGGTCACTAGTGTGGTGAAAGTCATTTGGATTCTGTTCTTAAGAGTTTGACTGGTTGAATA
AGTGGTTGGTATGAAGCTGTGTGTAATCGGCAGACCTATCTGTTGCACTTGGTTAGCTTTAATT
GTTCTGTAAGTTTGTTCAACAATAAATCTGCAGAGATTGAACAAATAA

hide sequence

RefSeq Acc Id:

XM_006239643 ⟹ XP_006239705

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	2,879,312 - 2,886,505 (-)	NCBI
Rnor_5.0	6	2,856,205 - 2,863,398 (-)	NCBI

Sequence:

show sequence

GCATATATAAGCTCGAATCCGGCCTCTTCCTTGTAGTGCCGCCGGGATCACTGGCAGAGGAGGT
TGTGTAGCCGCTTCCGTGCTACTCGCGCTGTGAGCATTGCAAGCTAGAGCCGAGTACGCGGGCC
GGCCATCATGTCACGTTACGGGCGGTATGGAGGAGAAACCAAGGTATATGTTGGTAACCTGGGA
ACTGGCGCTGGTAAAGGAGAGTTAGAAAGGGCATTCAGTTACTATGGGCCCTTAAGAACTGTAT
GGATTGCCAGAAATCCTCCAGGATTTGCCTTTGTGGAATTTGAAGACCCTAGAGATGCAGAGGA
TGCAGTTCGAGGATTGGATGGGAAAGTGATTTGTGGTTCTCGAGTGAGGGTTGAATTATCAACA
GGCATGCCTCGGAGATCTCGGTTTGATAGGCCACCTGCCCGTCGTCCCTTTGATCCTAATGATA
GATGCTATGAGTGTGGTGAAAAGGGACATTATGCTTATGACTGTCATCGCTATAGCCGACGAAG
AAGAAGCAGGTCACGATCTAGATCACATTCCCGATCCAGGGGAAGGCGATACTCTCGCTCACGT
AGTAGGAGCCGCGGTAGGAGGTCAAGATCAGCATCTCCTCGACGATCAAGGTCCGTGTCTCTTC
GTAGATCAAGATCAGCTTCACTCAGAAGATCTAGATCCCGCTCAAGGTCGAGATCAAGATCCAG
GTCTATTTCACGACCAAGAAGCAGCCGATCAAAATCCAGATCTCCATCTCCTAAAAGAAGTCGT
TCCCCATCAGGAAGTCCACACAGAAGTGCAAGTCCAGAAAGAATGGACTGAAGTTCTCAAGTTC
ACCCGTTAGGGAAAAGTTATTTTGTTTACATTATTATAAGGGATTTGTTATGTCTGTAAAGTGT
AACCTAGGAAGGTTCATCAACCATCTAATCAAAATGGATCTGGATTATTACTCTGTAAAATTCA
CAGCAGTAAATATTGTTTTTGTTGAATGTATTAACATCTTATGGTCTGGAAATGTAGGTTTTTA
TTTGACACATTTAAATAAAATGTTTCTAACTAGATGTTTTGATTTGTGTTCAATATTAATACTT
TTTCAATTGGGTAAGCATCAGACAAGTTTAACAATCAAGAAAATTGTTATTGACCATATTTCTA
TGGCCTGTATTCAAAGTTTAATGGTGTTGGTTAAGTATTAAACATCATTAACTGTTCTATACAT
AGCACAGGCCAGGATCTGAAAGGACTTTGACATTTTCATTTTACTCTTGTACCTTGGGTAAGAT
GATCTTTGAGTCCTCTTAAGAGCATGAGTGCATCATGGCAGATCCCTAATTAACTGGGAATTGG
TGTTAACAATCTCAAACTGTCAAGCTCAGAGGGACCACTGACAGGAAATAAGCAGAGTTACTGA
AATGTCAAGAAGTAGAAACTGGTTTTTAGAGGCTGAGGTTTTAGTAGTATAGTTTTTCAGACTA
TTTAAGTTGGGATGATTCTGGTCAATGTACTTTTTTTTCCCTTTCAAACAGCCAATTTAATACC
AAAAAATGCATGTTTGAGGAATTGTCTGAATTTGGAACAAAACCTTGTAAACCAGCTTTGCAAA
ATTATTCAGCCCCAATATTCTGTTCTTTTGAATGGATTGCCTTATCCTGTGCAAAAACCTGTTA
CTATCTGAGCTAGATTTTGCAGTTACTGACGACATTGTTCTATTTTGCCAAGCTGGTATAAAGA
AATGTCAAGCAAAAATGTAAAAGACAAAGCAGTTTTGTAAACCTTACATATTAGCATTTCATGT
AGCTAAGGTTTGTTACGTTTTTGTTTTGGGTTTTTCCTCCTTTGGTAGTGTCTGGTAGACCTTA
GAATGGTGTAGACAGTAGGTTCTTATTCAGACTTTAAATATATTATGCATAATAGGGCAGTAAT
GATCATTTTCGAGTTTTTTGGACAAGCTTTTTACTATATTTCTTAGCCTTGGTGTAAAAATAAT
AGTACAGGAGTCTGTCCTTGTCTATATTTTAGGCTTTTTCAATGAAGTTGTCTAATAGTACTGC
AACTTGAATGCATACTGGTCTGCCCCAAGTTTATCTGGCTGAGTGGTCACTAGTGTGGTGAAAG
TCATTTGGATTCTGTTCTTAAGAGTTTGACTGGTTGAATAAGTGGTTGGTATGAAGCTGTGTGT
AATCGGCAGACCTATCTGTTGCACTTGGTTAGCTTTAATTGTTCTGTAAGTTTGTTCAACAATA
AATCTGCAGAGATTGAACAAATAA

hide sequence

RefSeq Acc Id:

XM_006239644 ⟹ XP_006239706

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	2,879,312 - 2,886,505 (-)	NCBI
Rnor_5.0	6	2,856,205 - 2,863,398 (-)	NCBI

Sequence:

show sequence

GCATATATAAGCTCGAATCCGGCCTCTTCCTTGTAGTGCCGCCGGGATCACTGGCAGAGGAGGT
TGTGTAGCCGCTTCCGTGCTACTCGCGCTGTGAGCATTGCAAGCTAGAGCCGAGTACGCGGGCC
GGCCATCATGTCACGTTACGGGCGGTATGGAGGAGAAACCAAGGTATATGTTGGTAACCTGGGA
ACTGGCGCTGGTAAAGGAGAGTTAGAAAGGGCATTCAGTTACTATGGGCCCTTAAGAACTGTAT
GGATTGCCAGAAATCCTCCAGGATTTGCCTTTGTGGAATTTGAAGACCCTAGAGATGCAGAGGA
TGCAGTTCGAGGATTGGATGGGAAAGTGATTTGTGGTTCTCGAGTGAGGGTTGAATTATCAACA
GGCATGCCTCGGAGATCTCGGTTTGATAGGCCACCTGCCCGTCGTCCCTTTGATCCTAATGATA
GATGCTATGAGTGTGGTGAAAAGGGACATTATGCTTATGACTGTCATCGCTATAGCCGACGAAG
AAGAAGCAGGTCACGATCTAGATCACATTCCCGATCCAGGGGAAGGCGATACTCTCGCTCACGT
AGTAGGAGCCGCGGTAGGAGGTCAAGATCAGCATCTCCTCGACGATCAAGGTCCGTGTCTCTTC
GTAGATCAAGATCAGCTTCACTCAGAAGATCTAGGTCTGGTTCTATAATAGGATCGAGGTATTT
CCAATCCCGCTCAAGGTCGAGATCAAGATCCAGGTCTATTTCACGACCAAGAAGCAGTCGTTCC
CCATCAGGAAGTCCACACAGAAGTGCAAGTCCAGAAAGAATGGACTGAAGTTCTCAAGTTCACC
CGTTAGGGAAAAGTTATTTTGTTTACATTATTATAAGGGATTTGTTATGTCTGTAAAGTGTAAC
CTAGGAAGGTTCATCAACCATCTAATCAAAATGGATCTGGATTATTACTCTGTAAAATTCACAG
CAGTAAATATTGTTTTTGTTGAATGTATTAACATCTTATGGTCTGGAAATGTAGGTTTTTATTT
GACACATTTAAATAAAATGTTTCTAACTAGATGTTTTGATTTGTGTTCAATATTAATACTTTTT
CAATTGGGTAAGCATCAGACAAGTTTAACAATCAAGAAAATTGTTATTGACCATATTTCTATGG
CCTGTATTCAAAGTTTAATGGTGTTGGTTAAGTATTAAACATCATTAACTGTTCTATACATAGC
ACAGGCCAGGATCTGAAAGGACTTTGACATTTTCATTTTACTCTTGTACCTTGGGTAAGATGAT
CTTTGAGTCCTCTTAAGAGCATGAGTGCATCATGGCAGATCCCTAATTAACTGGGAATTGGTGT
TAACAATCTCAAACTGTCAAGCTCAGAGGGACCACTGACAGGAAATAAGCAGAGTTACTGAAAT
GTCAAGAAGTAGAAACTGGTTTTTAGAGGCTGAGGTTTTAGTAGTATAGTTTTTCAGACTATTT
AAGTTGGGATGATTCTGGTCAATGTACTTTTTTTTCCCTTTCAAACAGCCAATTTAATACCAAA
AAATGCATGTTTGAGGAATTGTCTGAATTTGGAACAAAACCTTGTAAACCAGCTTTGCAAAATT
ATTCAGCCCCAATATTCTGTTCTTTTGAATGGATTGCCTTATCCTGTGCAAAAACCTGTTACTA
TCTGAGCTAGATTTTGCAGTTACTGACGACATTGTTCTATTTTGCCAAGCTGGTATAAAGAAAT
GTCAAGCAAAAATGTAAAAGACAAAGCAGTTTTGTAAACCTTACATATTAGCATTTCATGTAGC
TAAGGTTTGTTACGTTTTTGTTTTGGGTTTTTCCTCCTTTGGTAGTGTCTGGTAGACCTTAGAA
TGGTGTAGACAGTAGGTTCTTATTCAGACTTTAAATATATTATGCATAATAGGGCAGTAATGAT
CATTTTCGAGTTTTTTGGACAAGCTTTTTACTATATTTCTTAGCCTTGGTGTAAAAATAATAGT
ACAGGAGTCTGTCCTTGTCTATATTTTAGGCTTTTTCAATGAAGTTGTCTAATAGTACTGCAAC
TTGAATGCATACTGGTCTGCCCCAAGTTTATCTGGCTGAGTGGTCACTAGTGTGGTGAAAGTCA
TTTGGATTCTGTTCTTAAGAGTTTGACTGGTTGAATAAGTGGTTGGTATGAAGCTGTGTGTAAT
CGGCAGACCTATCTGTTGCACTTGGTTAGCTTTAATTGTTCTGTAAGTTTGTTCAACAATAAAT
CTGCAGAGATTGAACAAATAA

hide sequence

RefSeq Acc Id:

XM_006239645 ⟹ XP_006239707

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	2,879,312 - 2,886,505 (-)	NCBI
Rnor_5.0	6	2,856,205 - 2,863,398 (-)	NCBI

Sequence:

show sequence

GCATATATAAGCTCGAATCCGGCCTCTTCCTTGTAGTGCCGCCGGGATCACTGGCAGAGGAGGT
TGTGTAGCCGCTTCCGTGCTACTCGCGCTGTGAGCATTGCAAGCTAGAGCCGAGTACGCGGGCC
GGCCATCATGTCACGTTACGGGCGGTATGGAGGAGAAACCAAGGTATATGTTGGTAACCTGGGA
ACTGGCGCTGGTAAAGGAGAGTTAGAAAGGGCATTCAGTTACTATGGGCCCTTAAGAACTGTAT
GGATTGCCAGAAATCCTCCAGGATTTGCCTTTGTGGAATTTGAAGACCCTAGAGATGCAGAGGA
TGCAGTTCGAGGATTGGATGGGAAAGTGATTTGTGGTTCTCGAGTGAGGGTTGAATTATCAACA
GGCATGCCTCGGAGATCTCGGTTTGATAGGCCACCTGCCCGTCGTCCCTTTGATCCTAATGATA
GATGCTATGAGTGTGGTGAAAAGGGACATTATGCTTATGACTGTCATCGCTATAGCCGACGAAG
AAGAAGCAGGTCACGATCTAGATCACATTCCCGATCCAGGGGAAGGCGATACTCTCGCTCACGT
AGTAGGAGCCGCGGTAGGAGGTCAAGATCAGCATCTCCTCGACGATCAAGGTCCGTGTCTCTTC
GTAGATCAAGATCAGCTTCACTCAGAAGATCTAGGTCTGGTTCTATAATAGGATCGAGATCCCG
CTCAAGGTCGAGATCAAGATCCAGGTCTATTTCACGACCAAGAAGCAGTCGTTCCCCATCAGGA
AGTCCACACAGAAGTGCAAGTCCAGAAAGAATGGACTGAAGTTCTCAAGTTCACCCGTTAGGGA
AAAGTTATTTTGTTTACATTATTATAAGGGATTTGTTATGTCTGTAAAGTGTAACCTAGGAAGG
TTCATCAACCATCTAATCAAAATGGATCTGGATTATTACTCTGTAAAATTCACAGCAGTAAATA
TTGTTTTTGTTGAATGTATTAACATCTTATGGTCTGGAAATGTAGGTTTTTATTTGACACATTT
AAATAAAATGTTTCTAACTAGATGTTTTGATTTGTGTTCAATATTAATACTTTTTCAATTGGGT
AAGCATCAGACAAGTTTAACAATCAAGAAAATTGTTATTGACCATATTTCTATGGCCTGTATTC
AAAGTTTAATGGTGTTGGTTAAGTATTAAACATCATTAACTGTTCTATACATAGCACAGGCCAG
GATCTGAAAGGACTTTGACATTTTCATTTTACTCTTGTACCTTGGGTAAGATGATCTTTGAGTC
CTCTTAAGAGCATGAGTGCATCATGGCAGATCCCTAATTAACTGGGAATTGGTGTTAACAATCT
CAAACTGTCAAGCTCAGAGGGACCACTGACAGGAAATAAGCAGAGTTACTGAAATGTCAAGAAG
TAGAAACTGGTTTTTAGAGGCTGAGGTTTTAGTAGTATAGTTTTTCAGACTATTTAAGTTGGGA
TGATTCTGGTCAATGTACTTTTTTTTCCCTTTCAAACAGCCAATTTAATACCAAAAAATGCATG
TTTGAGGAATTGTCTGAATTTGGAACAAAACCTTGTAAACCAGCTTTGCAAAATTATTCAGCCC
CAATATTCTGTTCTTTTGAATGGATTGCCTTATCCTGTGCAAAAACCTGTTACTATCTGAGCTA
GATTTTGCAGTTACTGACGACATTGTTCTATTTTGCCAAGCTGGTATAAAGAAATGTCAAGCAA
AAATGTAAAAGACAAAGCAGTTTTGTAAACCTTACATATTAGCATTTCATGTAGCTAAGGTTTG
TTACGTTTTTGTTTTGGGTTTTTCCTCCTTTGGTAGTGTCTGGTAGACCTTAGAATGGTGTAGA
CAGTAGGTTCTTATTCAGACTTTAAATATATTATGCATAATAGGGCAGTAATGATCATTTTCGA
GTTTTTTGGACAAGCTTTTTACTATATTTCTTAGCCTTGGTGTAAAAATAATAGTACAGGAGTC
TGTCCTTGTCTATATTTTAGGCTTTTTCAATGAAGTTGTCTAATAGTACTGCAACTTGAATGCA
TACTGGTCTGCCCCAAGTTTATCTGGCTGAGTGGTCACTAGTGTGGTGAAAGTCATTTGGATTC
TGTTCTTAAGAGTTTGACTGGTTGAATAAGTGGTTGGTATGAAGCTGTGTGTAATCGGCAGACC
TATCTGTTGCACTTGGTTAGCTTTAATTGTTCTGTAAGTTTGTTCAACAATAAATCTGCAGAGA
TTGAACAAATAA

hide sequence

RefSeq Acc Id:

XM_006239646 ⟹ XP_006239708

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	2,879,312 - 2,886,505 (-)	NCBI
Rnor_5.0	6	2,856,205 - 2,863,398 (-)	NCBI

Sequence:

show sequence

GCATATATAAGCTCGAATCCGGCCTCTTCCTTGTAGTGCCGCCGGGATCACTGGCAGAGGAGGT
TGTGTAGCCGCTTCCGTGCTACTCGCGCTGTGAGCATTGCAAGCTAGAGCCGAGTACGCGGGCC
GGCCATCATGTCACGTTACGGGCGGTATGGAGGAGAAACCAAGGTATATGTTGGTAACCTGGGA
ACTGGCGCTGGTAAAGGAGAGTTAGAAAGGGCATTCAGTTACTATGGGCCCTTAAGAACTGTAT
GGATTGCCAGAAATCCTCCAGGATTTGCCTTTGTGGAATTTGAAGACCCTAGAGATGCAGAGGA
TGCAGTTCGAGGATTGGATGGGAAAGTGATTTGTGGTTCTCGAGTGAGGGTTGAATTATCAACA
GGCATGCCTCGGAGATCTCGGTTTGATAGGCCACCTGCCCGTCGTCCCTTTGATCCTAATGATA
GATGCTATGAGTGTGGTGAAAAGGGACATTATGCTTATGACTGTCATCGCTATAGCCGACGAAG
AAGAAGCAGGTCACGATCTAGATCACATTCCCGATCCAGGGGAAGGCGATACTCTCGCTCACGT
AGTAGGAGCCGCGGTAGGAGGTCAAGATCAGCATCTCCTCGACGATCAAGGTCCGTGTCTCTTC
GTAGATCAAGATCAGCTTCACTCAGAAGATCTAGATCCCGCTCAAGGTCGAGATCAAGATCCAG
GTCTATTTCACGACCAAGAAGCAGTCGTTCCCCATCAGGAAGTCCACACAGAAGTGCAAGTCCA
GAAAGAATGGACTGAAGTTCTCAAGTTCACCCGTTAGGGAAAAGTTATTTTGTTTACATTATTA
TAAGGGATTTGTTATGTCTGTAAAGTGTAACCTAGGAAGGTTCATCAACCATCTAATCAAAATG
GATCTGGATTATTACTCTGTAAAATTCACAGCAGTAAATATTGTTTTTGTTGAATGTATTAACA
TCTTATGGTCTGGAAATGTAGGTTTTTATTTGACACATTTAAATAAAATGTTTCTAACTAGATG
TTTTGATTTGTGTTCAATATTAATACTTTTTCAATTGGGTAAGCATCAGACAAGTTTAACAATC
AAGAAAATTGTTATTGACCATATTTCTATGGCCTGTATTCAAAGTTTAATGGTGTTGGTTAAGT
ATTAAACATCATTAACTGTTCTATACATAGCACAGGCCAGGATCTGAAAGGACTTTGACATTTT
CATTTTACTCTTGTACCTTGGGTAAGATGATCTTTGAGTCCTCTTAAGAGCATGAGTGCATCAT
GGCAGATCCCTAATTAACTGGGAATTGGTGTTAACAATCTCAAACTGTCAAGCTCAGAGGGACC
ACTGACAGGAAATAAGCAGAGTTACTGAAATGTCAAGAAGTAGAAACTGGTTTTTAGAGGCTGA
GGTTTTAGTAGTATAGTTTTTCAGACTATTTAAGTTGGGATGATTCTGGTCAATGTACTTTTTT
TTCCCTTTCAAACAGCCAATTTAATACCAAAAAATGCATGTTTGAGGAATTGTCTGAATTTGGA
ACAAAACCTTGTAAACCAGCTTTGCAAAATTATTCAGCCCCAATATTCTGTTCTTTTGAATGGA
TTGCCTTATCCTGTGCAAAAACCTGTTACTATCTGAGCTAGATTTTGCAGTTACTGACGACATT
GTTCTATTTTGCCAAGCTGGTATAAAGAAATGTCAAGCAAAAATGTAAAAGACAAAGCAGTTTT
GTAAACCTTACATATTAGCATTTCATGTAGCTAAGGTTTGTTACGTTTTTGTTTTGGGTTTTTC
CTCCTTTGGTAGTGTCTGGTAGACCTTAGAATGGTGTAGACAGTAGGTTCTTATTCAGACTTTA
AATATATTATGCATAATAGGGCAGTAATGATCATTTTCGAGTTTTTTGGACAAGCTTTTTACTA
TATTTCTTAGCCTTGGTGTAAAAATAATAGTACAGGAGTCTGTCCTTGTCTATATTTTAGGCTT
TTTCAATGAAGTTGTCTAATAGTACTGCAACTTGAATGCATACTGGTCTGCCCCAAGTTTATCT
GGCTGAGTGGTCACTAGTGTGGTGAAAGTCATTTGGATTCTGTTCTTAAGAGTTTGACTGGTTG
AATAAGTGGTTGGTATGAAGCTGTGTGTAATCGGCAGACCTATCTGTTGCACTTGGTTAGCTTT
AATTGTTCTGTAAGTTTGTTCAACAATAAATCTGCAGAGATTGAACAAATAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001034124	(Get FASTA)	NCBI Sequence Viewer
	XP_006239704	(Get FASTA)	NCBI Sequence Viewer
	XP_006239705	(Get FASTA)	NCBI Sequence Viewer
	XP_006239706	(Get FASTA)	NCBI Sequence Viewer
	XP_006239707	(Get FASTA)	NCBI Sequence Viewer
	XP_006239708	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99175	(Get FASTA)	NCBI Sequence Viewer
	EDM02771	(Get FASTA)	NCBI Sequence Viewer
	EDM02772	(Get FASTA)	NCBI Sequence Viewer
	EDM02775	(Get FASTA)	NCBI Sequence Viewer
	EDM02776	(Get FASTA)	NCBI Sequence Viewer
	EDM02778	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001034124 ⟸ NM_001039035

- UniProtKB:

D4A720 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAV
RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRS
RSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSVSLRRSRSASLRRSRSGSIIGSRYFQS
RSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPHRSASPERMD

hide sequence

RefSeq Acc Id:

XP_006239708 ⟸ XM_006239646

- Peptide Label:

isoform X5

- Sequence:

show sequence

MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAV
RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRS
RSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSVSLRRSRSASLRRSRSRSRSRSRSRSI
SRPRSSRSPSGSPHRSASPERMD

hide sequence

RefSeq Acc Id:

XP_006239705 ⟸ XM_006239643

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAV
RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRS
RSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSVSLRRSRSASLRRSRSRSRSRSRSRSI
SRPRSSRSKSRSPSPKRSRSPSGSPHRSASPERMD

hide sequence

RefSeq Acc Id:

XP_006239707 ⟸ XM_006239645

- Peptide Label:

isoform X4

- Sequence:

show sequence

MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAV
RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRS
RSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSVSLRRSRSASLRRSRSGSIIGSRSRSR
SRSRSRSISRPRSSRSPSGSPHRSASPERMD

hide sequence

RefSeq Acc Id:

XP_006239704 ⟸ XM_006239642

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAV
RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRS
RSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSVSLRRSRSASLRRSRSGSIIGSRSRSR
SRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPHRSASPERMD

hide sequence

RefSeq Acc Id:

XP_006239706 ⟸ XM_006239644

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAV
RGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRS
RSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSVSLRRSRSASLRRSRSGSIIGSRYFQS
RSRSRSRSRSISRPRSSRSPSGSPHRSASPERMD

hide sequence

RefSeq Acc Id:

ENSRNOP00000035155 ⟸ ENSRNOT00000038448

Protein Domains

CCHC-type RRM

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694364

Promoter ID:

EPDNEW_R4889

Type:

single initiation site

Name:

Srsf7_1

Description:

serine and arginine rich splicing factor 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	2,886,473 - 2,886,533	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307425	AgrOrtholog
Ensembl Genes	ENSRNOG00000027360	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000035155	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000038448	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7382701	IMAGE-MGC_LOAD
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_RNP1	UniProtKB/TrEMBL
	SRSF7_RRM	UniProtKB/TrEMBL
	Znf_CCHC	UniProtKB/TrEMBL
	Znf_CCHC_sf	UniProtKB/TrEMBL
KEGG Report	rno:362687	UniProtKB/TrEMBL
MGC_CLONE	MGC:116344	IMAGE-MGC_LOAD
NCBI Gene	362687	ENTREZGENE
Pfam	RRM_1	UniProtKB/TrEMBL
PhenoGen	Srsf7	PhenoGen
PROSITE	RRM	UniProtKB/TrEMBL
	ZF_CCHC	UniProtKB/TrEMBL
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
	SSF57756	UniProtKB/TrEMBL
UniProt	D4A720	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-06-15	Srsf7	serine and arginine rich splicing factor 7	Srsf7	serine/arginine-rich splicing factor 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-08-01	Srsf7	serine/arginine-rich splicing factor 7	Sfrs7	splicing factor, arginine/serine-rich 7, 35kDa	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-07-22	Sfrs7	splicing factor, arginine/serine-rich 7, 35kDa	Srsf7	serine/arginine-rich splicing factor 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-07-13	Srsf7	serine/arginine-rich splicing factor 7	Sfrs7	splicing factor, arginine/serine-rich 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-04-27	Sfrs7	splicing factor, arginine/serine-rich 7	Sfrs7	splicing factor, arginine/serine-rich 7, 35kDa	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-09-20	Sfrs7	splicing factor, arginine/serine-rich 7, 35kDa	Srsf7	serine/arginine-rich splicing factor 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-09-14	Srsf7	serine/arginine-rich splicing factor 7	Sfrs7	splicing factor, arginine/serine-rich 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Sfrs7	splicing factor, arginine/serine-rich 7	Sfrs7_predicted	splicing factor, arginine/serine-rich 7 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Sfrs7_predicted	splicing factor, arginine/serine-rich 7 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations