Cdc40 (cell division cycle 40) - Rat Genome Database

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Gene: Cdc40 (cell division cycle 40) Rattus norvegicus
Analyze
Symbol: Cdc40
Name: cell division cycle 40
RGD ID: 1307063
Description: Predicted to enable mRNA binding activity. Predicted to be involved in embryonic brain development and mRNA splicing, via spliceosome. Predicted to be located in nuclear speck. Predicted to be part of U2-type catalytic step 2 spliceosome. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 15. Orthologous to human CDC40 (cell division cycle 40); PARTICIPATES IN spliceosome pathway; INTERACTS WITH atrazine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cell division cycle 40 homolog; cell division cycle 40 homolog (S. cerevisiae); cell division cycle 40 homolog (yeast) ; LOC361859; pre-mRNA-processing factor 17
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22044,273,080 - 44,325,610 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2044,273,089 - 44,325,358 (-)Ensembl
Rnor_6.02048,503,973 - 48,574,546 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2048,503,973 - 48,574,546 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02050,156,108 - 50,219,888 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42044,952,482 - 44,974,587 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12044,975,493 - 44,998,090 (-)NCBI
Celera2045,080,203 - 45,130,581 (-)NCBICelera
Cytogenetic Map20q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9830021   PMID:11991638   PMID:12477932   PMID:22658674   PMID:28076346  


Genomics

Comparative Map Data
Cdc40
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22044,273,080 - 44,325,610 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2044,273,089 - 44,325,358 (-)Ensembl
Rnor_6.02048,503,973 - 48,574,546 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2048,503,973 - 48,574,546 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02050,156,108 - 50,219,888 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42044,952,482 - 44,974,587 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12044,975,493 - 44,998,090 (-)NCBI
Celera2045,080,203 - 45,130,581 (-)NCBICelera
Cytogenetic Map20q13NCBI
CDC40
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386110,180,427 - 110,232,232 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl6110,180,141 - 110,254,275 (+)EnsemblGRCh38hg38GRCh38
GRCh376110,501,630 - 110,553,435 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366110,608,317 - 110,660,116 (+)NCBINCBI36hg18NCBI36
Build 346110,608,316 - 110,660,113NCBI
Celera6111,248,290 - 111,300,016 (+)NCBI
Cytogenetic Map6q21NCBI
HuRef6108,068,262 - 108,120,175 (+)NCBIHuRef
CHM1_16110,764,827 - 110,816,626 (+)NCBICHM1_1
T2T-CHM13v2.06111,358,868 - 111,410,681 (+)NCBI
Cdc40
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391040,707,617 - 40,759,139 (-)NCBIGRCm39mm39
GRCm39 Ensembl1040,707,617 - 40,759,307 (-)Ensembl
GRCm381040,831,621 - 40,883,143 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1040,831,621 - 40,883,311 (-)EnsemblGRCm38mm10GRCm38
MGSCv371040,552,699 - 40,602,949 (-)NCBIGRCm37mm9NCBIm37
MGSCv361040,520,036 - 40,571,776 (-)NCBImm8
Celera1041,729,015 - 41,779,240 (-)NCBICelera
Cytogenetic Map10B1NCBI
Cdc40
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541134,966,339 - 35,007,558 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541134,966,797 - 35,007,577 (+)NCBIChiLan1.0ChiLan1.0
CDC40
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16112,058,835 - 112,108,985 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6112,058,835 - 112,131,813 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06107,989,176 - 108,040,790 (+)NCBIMhudiblu_PPA_v0panPan3
CDC40
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11266,897,953 - 66,950,131 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1266,897,412 - 66,949,366 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1266,717,460 - 66,769,671 (+)NCBI
ROS_Cfam_1.01267,782,001 - 67,834,254 (+)NCBI
ROS_Cfam_1.0 Ensembl1267,780,399 - 67,834,251 (+)Ensembl
UMICH_Zoey_3.11267,133,353 - 67,185,550 (+)NCBI
UNSW_CanFamBas_1.01266,979,811 - 67,032,023 (+)NCBI
UU_Cfam_GSD_1.01267,251,589 - 67,303,808 (+)NCBI
Cdc40
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946101,821,254 - 101,868,091 (+)NCBI
SpeTri2.0NW_0049365646,096,180 - 6,143,852 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC40
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl176,179,164 - 76,232,959 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1176,179,169 - 76,234,690 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2185,659,401 - 85,714,982 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDC40
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11363,666,294 - 63,718,628 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1363,666,294 - 63,718,521 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604035,954,432 - 36,004,665 (-)NCBIVero_WHO_p1.0
Cdc40
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249161,302,420 - 1,352,986 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046249161,302,294 - 1,353,487 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
BG372291  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22044,264,431 - 44,264,612 (-)MAPPERmRatBN7.2
Rnor_6.02048,583,023 - 48,583,203NCBIRnor6.0
Rnor_6.02048,527,912 - 48,528,092NCBIRnor6.0
Rnor_5.02050,228,362 - 50,228,542UniSTSRnor5.0
Rnor_5.02050,177,706 - 50,177,886UniSTSRnor5.0
RGSC_v3.42044,943,825 - 44,944,005UniSTSRGSC3.4
Celera2045,071,546 - 45,071,726UniSTS
RH 3.4 Map20479.7UniSTS
Cytogenetic Map20q12UniSTS
RH143599  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.02050,196,635 - 50,196,841NCBIRnor5.0
RGSC_v3.42044,975,383 - 44,975,601UniSTSRGSC3.4
Celera2045,102,531 - 45,102,749UniSTS
RH 3.4 Map20469.7UniSTS
Cytogenetic Map20q12UniSTS
RH140230  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22044,306,843 - 44,307,041 (-)MAPPERmRatBN7.2
Rnor_6.02048,523,752 - 48,523,949NCBIRnor6.0
Rnor_5.02050,173,546 - 50,173,743UniSTSRnor5.0
Celera2045,111,846 - 45,112,043UniSTS
RH 3.4 Map20476.3UniSTS
Cytogenetic Map20q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat
70158Bp60Blood pressure QTL 603arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)203161428444396023Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:168
Count of miRNA genes:116
Interacting mature miRNAs:140
Transcripts:ENSRNOT00000064081
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 20 36 21 18 21 69 27 34 10
Low 23 21 20 1 20 8 11 5 8 7 1 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000064081   ⟹   ENSRNOP00000058923
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2044,273,089 - 44,294,722 (-)Ensembl
Rnor_6.0 Ensembl2048,503,973 - 48,574,546 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000077926   ⟹   ENSRNOP00000069760
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2044,273,093 - 44,325,358 (-)Ensembl
Rnor_6.0 Ensembl2048,552,289 - 48,574,538 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000087740   ⟹   ENSRNOP00000071389
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2048,504,264 - 48,573,218 (+)Ensembl
RefSeq Acc Id: NM_001108538   ⟹   NP_001102008
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22044,273,089 - 44,325,610 (-)NCBI
Rnor_6.02048,503,973 - 48,574,546 (+)NCBI
Rnor_5.02050,156,108 - 50,219,888 (+)NCBI
RGSC_v3.42044,952,482 - 44,974,587 (-)RGD
Celera2045,080,203 - 45,130,581 (-)RGD
Sequence:
RefSeq Acc Id: XM_039098888   ⟹   XP_038954816
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22044,273,080 - 44,325,324 (-)NCBI
RefSeq Acc Id: XR_005497295
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22044,273,080 - 44,325,605 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001102008 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381149 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954816 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66724 (Get FASTA)   NCBI Sequence Viewer  
  EDL83241 (Get FASTA)   NCBI Sequence Viewer  
  EDL83242 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001102008   ⟸   NM_001108538
- Sequence:
RefSeq Acc Id: ENSRNOP00000071389   ⟸   ENSRNOT00000087740
RefSeq Acc Id: ENSRNOP00000069760   ⟸   ENSRNOT00000077926
RefSeq Acc Id: ENSRNOP00000058923   ⟸   ENSRNOT00000064081
RefSeq Acc Id: XP_038954816   ⟸   XM_039098888
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K0C5-F1-model_v2 AlphaFold A0A0G2K0C5 1-579 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701684
Promoter ID:EPDNEW_R12202
Type:initiation region
Name:Cdc40_1
Description:cell division cycle 40
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02048,504,244 - 48,504,304EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307063 AgrOrtholog
BioCyc Gene G2FUF-3414 BioCyc
Ensembl Genes ENSRNOG00000000581 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000058923.3 UniProtKB/TrEMBL
  ENSRNOP00000069760 ENTREZGENE
  ENSRNOP00000069760.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064081 ENTREZGENE
  ENSRNOT00000064081.4 UniProtKB/TrEMBL
  ENSRNOT00000077926 ENTREZGENE
  ENSRNOT00000077926.2 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7933637 IMAGE-MGC_LOAD
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  PRPF17 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:361859 UniProtKB/TrEMBL
MGC_CLONE MGC:188440 IMAGE-MGC_LOAD
NCBI Gene 361859 ENTREZGENE
PANTHER PTHR43979 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PhenoGen Cdc40 PhenoGen
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt B2RYC1_RAT UniProtKB/TrEMBL
  F1LTB9_RAT UniProtKB/TrEMBL
UniProt Secondary A0A0G2JW64 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-01-23 Cdc40  cell division cycle 40  Cdc40  cell division cycle 40 homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-26 Cdc40  cell division cycle 40 homolog (S. cerevisiae)  Cdc40  cell division cycle 40 homolog (yeast)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Cdc40  cell division cycle 40 homolog (yeast)   Cdc40_predicted  cell division cycle 40 homolog (yeast) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cdc40_predicted  cell division cycle 40 homolog (yeast) (predicted)      Symbol and Name status set to approved 70820 APPROVED