Pnn (pinin, desmosome associated protein) - Rat Genome Database

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Gene: Pnn (pinin, desmosome associated protein) Rattus norvegicus
Analyze
Symbol: Pnn
Name: pinin, desmosome associated protein
RGD ID: 1597086
Description: Predicted to enable DNA binding activity. Predicted to be involved in RNA splicing and mRNA processing. Predicted to act upstream of or within cell-cell adhesion. Predicted to be located in cytoplasm; desmosome; and nuclear speck. Predicted to be part of catalytic step 2 spliceosome and exon-exon junction complex. Orthologous to human PNN (pinin, desmosome associated protein); PARTICIPATES IN spliceosome pathway; mRNA decay pathway; RNA transport pathway; INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC362742; LOC368070; pinin; similar to Pinin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8682,493,032 - 82,501,345 (+)NCBIGRCr8
mRatBN7.2676,758,138 - 76,766,451 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl676,758,117 - 76,766,889 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx677,204,308 - 77,212,639 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0677,503,634 - 77,511,965 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0676,931,110 - 76,939,441 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0680,159,364 - 80,167,677 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl680,159,364 - 80,167,677 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0689,685,236 - 89,693,549 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4679,759,026 - 79,767,339 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera675,518,424 - 75,526,737 (+)NCBICelera
Cytogenetic Map6q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
Brodifacoum  (EXP)
cadmium dichloride  (ISO)
caffeine  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
daidzein  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (EXP)
Dibutyl phosphate  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
enzyme inhibitor  (ISO)
fenvalerate  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
genistein  (ISO)
glycitein  (ISO)
glyphosate  (EXP)
iron dichloride  (ISO)
ivermectin  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
menadione  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
nefazodone  (EXP)
nickel dichloride  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (EXP,ISO)
phenol  (ISO)
phenytoin  (EXP)
pirinixic acid  (EXP)
piroxicam  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
propofol  (ISO)
resorcinol  (ISO)
resveratrol  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
sevoflurane  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
tamibarotene  (ISO)
tanespimycin  (ISO)
temozolomide  (ISO)
tetraphene  (ISO)
titanium dioxide  (ISO)
triadimefon  (EXP)
trichloroethene  (EXP)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
5. The ever-increasing complexities of the exon junction complex. Tange TO, etal., Curr Opin Cell Biol. 2004 Jun;16(3):279-84.
Additional References at PubMed
PMID:8922384   PMID:11991638   PMID:16314458   PMID:16427813   PMID:19946888   PMID:22658674   PMID:22681889   PMID:25931508   PMID:31167655  


Genomics

Comparative Map Data
Pnn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8682,493,032 - 82,501,345 (+)NCBIGRCr8
mRatBN7.2676,758,138 - 76,766,451 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl676,758,117 - 76,766,889 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx677,204,308 - 77,212,639 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0677,503,634 - 77,511,965 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0676,931,110 - 76,939,441 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0680,159,364 - 80,167,677 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl680,159,364 - 80,167,677 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0689,685,236 - 89,693,549 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4679,759,026 - 79,767,339 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera675,518,424 - 75,526,737 (+)NCBICelera
Cytogenetic Map6q23NCBI
PNN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381439,175,254 - 39,183,220 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1439,175,183 - 39,183,220 (+)EnsemblGRCh38hg38GRCh38
GRCh371439,644,458 - 39,652,424 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361438,714,138 - 38,722,173 (+)NCBINCBI36Build 36hg18NCBI36
Build 341438,714,150 - 38,721,178NCBI
Celera1419,509,004 - 19,517,039 (+)NCBICelera
Cytogenetic Map14q21.1NCBI
HuRef1419,758,590 - 19,766,626 (+)NCBIHuRef
CHM1_11439,642,991 - 39,651,026 (+)NCBICHM1_1
T2T-CHM13v2.01433,363,935 - 33,371,901 (+)NCBIT2T-CHM13v2.0
Pnn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391259,113,705 - 59,120,803 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1259,113,670 - 59,120,784 (+)EnsemblGRCm39 Ensembl
GRCm381259,066,919 - 59,074,017 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1259,066,884 - 59,073,998 (+)EnsemblGRCm38mm10GRCm38
MGSCv371260,167,906 - 60,175,004 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361259,984,997 - 59,991,436 (+)NCBIMGSCv36mm8
Celera1260,227,023 - 60,234,122 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1226.0NCBI
Pnn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540922,102,016 - 22,110,505 (-)NCBIChiLan1.0ChiLan1.0
PNN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21540,508,135 - 40,516,239 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11439,724,649 - 39,732,753 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01419,945,185 - 19,952,922 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11438,300,782 - 38,308,523 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1438,300,782 - 38,308,512 (+)Ensemblpanpan1.1panPan2
PNN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1817,354,004 - 17,361,462 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl817,354,004 - 17,361,462 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha817,165,180 - 17,172,638 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0817,476,472 - 17,483,943 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl817,476,436 - 17,483,942 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1817,163,819 - 17,171,283 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0817,235,495 - 17,242,966 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0817,522,086 - 17,529,559 (+)NCBIUU_Cfam_GSD_1.0
Pnn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864049,256,272 - 49,264,092 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493649412,762,175 - 12,769,986 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PNN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1169,725,649 - 169,734,003 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11169,725,649 - 169,734,003 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21188,402,797 - 188,411,153 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PNN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12415,949,015 - 15,956,969 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2415,948,722 - 15,955,618 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660534,992,271 - 4,999,961 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pnn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248138,620,174 - 8,626,886 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248138,620,089 - 8,627,964 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pnn
55 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:227
Count of miRNA genes:145
Interacting mature miRNAs:175
Transcripts:ENSRNOT00000005439
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)67222764181132889Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65672856290198260Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat

Markers in Region
AU045199  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2676,766,602 - 76,766,853 (+)MAPPERmRatBN7.2
Rnor_6.0680,167,829 - 80,168,079NCBIRnor6.0
Rnor_5.0689,693,701 - 89,693,951UniSTSRnor5.0
RGSC_v3.4679,767,491 - 79,767,741UniSTSRGSC3.4
Celera675,526,889 - 75,527,139UniSTS
Cytogenetic Map6q23UniSTS
D12Ertd512e  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2676,766,012 - 76,766,255 (+)MAPPERmRatBN7.2
Rnor_6.0680,167,239 - 80,167,481NCBIRnor6.0
Rnor_5.0689,693,111 - 89,693,353UniSTSRnor5.0
RGSC_v3.4679,766,901 - 79,767,143UniSTSRGSC3.4
Celera675,526,299 - 75,526,541UniSTS
Cytogenetic Map6q23UniSTS
AA818736  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2676,766,833 - 76,767,000 (+)MAPPERmRatBN7.2
Rnor_6.0680,168,060 - 80,168,226NCBIRnor6.0
Rnor_5.0689,693,932 - 89,694,098UniSTSRnor5.0
RGSC_v3.4679,767,722 - 79,767,888UniSTSRGSC3.4
Celera675,527,120 - 75,527,286UniSTS
RH 3.4 Map6545.1UniSTS
Cytogenetic Map6q23UniSTS
G54093  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21636,864,170 - 36,864,313 (+)MAPPERmRatBN7.2
mRatBN7.2676,765,916 - 76,766,059 (+)MAPPERmRatBN7.2
Rnor_6.0680,167,143 - 80,167,285NCBIRnor6.0
Rnor_6.01639,609,800 - 39,609,942NCBIRnor6.0
Rnor_5.01639,386,975 - 39,387,117UniSTSRnor5.0
Rnor_5.0689,693,015 - 89,693,157UniSTSRnor5.0
RGSC_v3.4679,766,805 - 79,766,947UniSTSRGSC3.4
RGSC_v3.41639,881,651 - 39,881,793UniSTSRGSC3.4
Celera1635,018,350 - 35,018,492UniSTS
Celera675,526,203 - 75,526,345UniSTS
Cytogenetic Map16p11UniSTS
Cytogenetic Map6q23UniSTS
UniSTS:532324  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21636,865,690 - 36,866,057 (+)MAPPERmRatBN7.2
Rnor_6.01639,611,320 - 39,611,686NCBIRnor6.0
Rnor_5.01639,388,495 - 39,388,861UniSTSRnor5.0
Celera1635,019,870 - 35,020,236UniSTS
Cytogenetic Map16p11UniSTS
Cytogenetic Map6q23UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000005439   ⟹   ENSRNOP00000005439
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl676,758,117 - 76,766,889 (+)Ensembl
Rnor_6.0 Ensembl680,159,364 - 80,167,677 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096071   ⟹   ENSRNOP00000094347
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl676,758,155 - 76,766,878 (+)Ensembl
RefSeq Acc Id: NM_001109023   ⟹   NP_001102493
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8682,493,032 - 82,501,345 (+)NCBI
mRatBN7.2676,758,138 - 76,766,451 (+)NCBI
Rnor_6.0680,159,364 - 80,167,677 (+)NCBI
Rnor_5.0689,685,236 - 89,693,549 (+)NCBI
RGSC_v3.4679,759,026 - 79,767,339 (+)RGD
Celera675,518,424 - 75,526,737 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102493 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM03467 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005439.6
  ENSRNOP00000094347.1
RefSeq Acc Id: NP_001102493   ⟸   NM_001109023
- UniProtKB: D3ZAY8 (UniProtKB/TrEMBL),   A6HBR2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000005439   ⟸   ENSRNOT00000005439
Ensembl Acc Id: ENSRNOP00000094347   ⟸   ENSRNOT00000096071
Protein Domains
Pinin/SDK   Pinin/SDK/MemA protein

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZAY8-F1-model_v2 AlphaFold D3ZAY8 1-729 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694616
Promoter ID:EPDNEW_R5141
Type:multiple initiation site
Name:Pnn_1
Description:pinin, desmosome associated protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0680,159,355 - 80,159,415EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1597086 AgrOrtholog
BioCyc Gene G2FUF-37383 BioCyc
Ensembl Genes ENSRNOG00000004061 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005439.6 UniProtKB/TrEMBL
  ENSRNOT00000096071.1 UniProtKB/TrEMBL
InterPro Pinin UniProtKB/TrEMBL
  Pinin_SDK_memA UniProtKB/TrEMBL
  Pinin_SDK_N UniProtKB/TrEMBL
KEGG Report rno:368070 UniProtKB/TrEMBL
NCBI Gene 368070 ENTREZGENE
PANTHER PININ UniProtKB/TrEMBL
  PTHR12707 UniProtKB/TrEMBL
Pfam Pinin_SDK_memA UniProtKB/TrEMBL
  Pinin_SDK_N UniProtKB/TrEMBL
PhenoGen Pnn PhenoGen
RatGTEx ENSRNOG00000004061 RatGTEx
UniProt A0A8I6AKS0_RAT UniProtKB/TrEMBL
  A6HBR2 ENTREZGENE, UniProtKB/TrEMBL
  D3ZAY8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-06-15 Pnn  pinin, desmosome associated protein  Pnn_predicted  pinin (predicted)  Data merged from RGD:1305213 1643240 APPROVED
2008-09-09 Pnn  pinin, desmosome associated protein  Pnn  pinin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Pnn  pinin  LOC368070  similar to Pinin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC368070  similar to Pinin      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Pnn_predicted  pinin (predicted)      Symbol and Name status set to approved 70820 APPROVED