Pnn (pinin) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Pnn (pinin) Mus musculus
Analyze
Symbol: Pnn
Name: pinin
RGD ID: 1313106
MGI Page MGI
Description: Predicted to enable DNA binding activity. Predicted to be involved in RNA splicing and mRNA processing. Predicted to act upstream of or within cell-cell adhesion. Located in cytoplasm and nuclear speck. Is expressed in several structures, including central nervous system; eye; genitourinary system; gut; and hemolymphoid system gland. Orthologous to human PNN (pinin, desmosome associated protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AU045199; D12Ertd512; D12Ertd512e
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391259,113,705 - 59,120,803 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1259,113,670 - 59,120,784 (+)EnsemblGRCm39 Ensembl
GRCm381259,066,919 - 59,074,017 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1259,066,884 - 59,073,998 (+)EnsemblGRCm38mm10GRCm38
MGSCv371260,167,906 - 60,175,004 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361259,984,997 - 59,991,436 (+)NCBIMGSCv36mm8
Celera1260,227,023 - 60,234,122 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1226.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
arsenite(3-)  (EXP,ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
Brodifacoum  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
daidzein  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (ISO)
Dibutyl phosphate  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
enzyme inhibitor  (ISO)
fenvalerate  (ISO)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
genistein  (ISO)
glycitein  (ISO)
glyphosate  (ISO)
iron dichloride  (ISO)
ivermectin  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
menadione  (ISO)
methimazole  (ISO)
methylmercury chloride  (ISO)
nefazodone  (ISO)
nickel dichloride  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
phenobarbital  (EXP,ISO)
phenol  (ISO)
phenytoin  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propofol  (ISO)
resorcinol  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sevoflurane  (ISO)
sodium arsenite  (ISO)
succimer  (EXP)
tamibarotene  (ISO)
tanespimycin  (ISO)
temozolomide  (ISO)
tetraphene  (EXP)
titanium dioxide  (EXP)
triadimefon  (ISO)
trichloroethene  (ISO)
tungsten  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. The ever-increasing complexities of the exon junction complex. Tange TO, etal., Curr Opin Cell Biol. 2004 Jun;16(3):279-84.
Additional References at PubMed
PMID:8922384   PMID:9332356   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12819125   PMID:12875843   PMID:12904583   PMID:14610273   PMID:16141072  
PMID:16141073   PMID:16427813   PMID:16602821   PMID:17151600   PMID:17654715   PMID:19892877   PMID:20637749   PMID:21122108   PMID:21437620   PMID:21873635   PMID:22454513   PMID:23299472  
PMID:24194600   PMID:24309110   PMID:24457600   PMID:24952961   PMID:25489234   PMID:26167872   PMID:26206133   PMID:26584622   PMID:27626380   PMID:30388411   PMID:30457570   PMID:32325033  
PMID:38355793  


Genomics

Comparative Map Data
Pnn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391259,113,705 - 59,120,803 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1259,113,670 - 59,120,784 (+)EnsemblGRCm39 Ensembl
GRCm381259,066,919 - 59,074,017 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1259,066,884 - 59,073,998 (+)EnsemblGRCm38mm10GRCm38
MGSCv371260,167,906 - 60,175,004 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361259,984,997 - 59,991,436 (+)NCBIMGSCv36mm8
Celera1260,227,023 - 60,234,122 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1226.0NCBI
PNN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381439,175,254 - 39,183,220 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1439,175,183 - 39,183,220 (+)EnsemblGRCh38hg38GRCh38
GRCh371439,644,458 - 39,652,424 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361438,714,138 - 38,722,173 (+)NCBINCBI36Build 36hg18NCBI36
Build 341438,714,150 - 38,721,178NCBI
Celera1419,509,004 - 19,517,039 (+)NCBICelera
Cytogenetic Map14q21.1NCBI
HuRef1419,758,590 - 19,766,626 (+)NCBIHuRef
CHM1_11439,642,991 - 39,651,026 (+)NCBICHM1_1
T2T-CHM13v2.01433,363,935 - 33,371,901 (+)NCBIT2T-CHM13v2.0
Pnn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8682,493,032 - 82,501,345 (+)NCBIGRCr8
mRatBN7.2676,758,138 - 76,766,451 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl676,758,117 - 76,766,889 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx677,204,308 - 77,212,639 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0677,503,634 - 77,511,965 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0676,931,110 - 76,939,441 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0680,159,364 - 80,167,677 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl680,159,364 - 80,167,677 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0689,685,236 - 89,693,549 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4679,759,026 - 79,767,339 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera675,518,424 - 75,526,737 (+)NCBICelera
Cytogenetic Map6q23NCBI
Pnn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540922,102,016 - 22,110,505 (-)NCBIChiLan1.0ChiLan1.0
PNN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21540,508,135 - 40,516,239 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11439,724,649 - 39,732,753 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01419,945,185 - 19,952,922 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11438,300,782 - 38,308,523 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1438,300,782 - 38,308,512 (+)Ensemblpanpan1.1panPan2
PNN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1817,354,004 - 17,361,462 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl817,354,004 - 17,361,462 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha817,165,180 - 17,172,638 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0817,476,472 - 17,483,943 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl817,476,436 - 17,483,942 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1817,163,819 - 17,171,283 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0817,235,495 - 17,242,966 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0817,522,086 - 17,529,559 (+)NCBIUU_Cfam_GSD_1.0
Pnn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864049,256,272 - 49,264,092 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493649412,762,175 - 12,769,986 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PNN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1169,725,649 - 169,734,003 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11169,725,649 - 169,734,003 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21188,402,797 - 188,411,153 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PNN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12415,949,015 - 15,956,969 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2415,948,722 - 15,955,618 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660534,992,271 - 4,999,961 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pnn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248138,620,174 - 8,626,886 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248138,620,089 - 8,627,964 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pnn
211 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:343
Count of miRNA genes:229
Interacting mature miRNAs:269
Transcripts:ENSMUST00000021381
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
13504832Bacszq2_mbaculum size QTL 2 (mouse)125694579875345787Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse

Markers in Region
Pnn  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12C1UniSTS
cM Map1223.0UniSTS
AU045199  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381259,073,567 - 59,073,817UniSTSGRCm38
MGSCv371260,174,554 - 60,174,804UniSTSGRCm37
Celera1260,233,672 - 60,233,922UniSTS
Cytogenetic Map12C1UniSTS
cM Map1223.0UniSTS
Whitehead/MRC_RH12596.94UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS
G54093  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381259,072,894 - 59,073,036UniSTSGRCm38
MGSCv371260,173,881 - 60,174,023UniSTSGRCm37
Celera1260,232,999 - 60,233,141UniSTS
Cytogenetic Map12C1UniSTS
cM Map1223.0UniSTS
D12Ertd512e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381259,072,990 - 59,073,232UniSTSGRCm38
MGSCv371260,173,977 - 60,174,219UniSTSGRCm37
Celera1260,233,095 - 60,233,337UniSTS
Cytogenetic Map12C1UniSTS
cM Map1223.0UniSTS
Pnn  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12C1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_008891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY129403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY775218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ318297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y08701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000021381   ⟹   ENSMUSP00000021381
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1259,113,670 - 59,120,784 (+)Ensembl
GRCm38.p6 Ensembl1259,066,884 - 59,073,998 (+)Ensembl
Ensembl Acc Id: ENSMUST00000217676
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1259,113,750 - 59,115,477 (+)Ensembl
GRCm38.p6 Ensembl1259,066,964 - 59,068,691 (+)Ensembl
Ensembl Acc Id: ENSMUST00000217773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1259,113,708 - 59,118,322 (+)Ensembl
GRCm38.p6 Ensembl1259,066,922 - 59,071,536 (+)Ensembl
Ensembl Acc Id: ENSMUST00000219176   ⟹   ENSMUSP00000151381
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1259,113,729 - 59,115,961 (+)Ensembl
GRCm38.p6 Ensembl1259,066,943 - 59,069,175 (+)Ensembl
RefSeq Acc Id: NM_008891   ⟹   NP_032917
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391259,113,705 - 59,120,803 (+)NCBI
GRCm381259,066,919 - 59,074,017 (+)ENTREZGENE
MGSCv371260,167,906 - 60,175,004 (+)RGD
Celera1260,227,023 - 60,234,122 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_032917   ⟸   NM_008891
- UniProtKB: Q8CGU3 (UniProtKB/Swiss-Prot),   Q8CD89 (UniProtKB/Swiss-Prot),   O35691 (UniProtKB/Swiss-Prot),   Q3TUQ5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000151381   ⟸   ENSMUST00000219176
Ensembl Acc Id: ENSMUSP00000021381   ⟸   ENSMUST00000021381
Protein Domains
Pinin/SDK   Pinin/SDK/MemA protein

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35691-F1-model_v2 AlphaFold O35691 1-725 view protein structure

Promoters
RGD ID:8678344
Promoter ID:EPDNEW_M17203
Type:initiation region
Name:Pnn_1
Description:Mus musculus pinin , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381259,066,976 - 59,067,036EPDNEW
RGD ID:6823273
Promoter ID:MM_KWN:11737
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_008891,   UC007NQA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361260,167,161 - 60,168,097 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1100514 AgrOrtholog
Ensembl Genes ENSMUSG00000020994 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000021381 ENTREZGENE
  ENSMUST00000021381.6 UniProtKB/TrEMBL
  ENSMUST00000219176.2 UniProtKB/TrEMBL
InterPro Pinin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pinin_SDK_MemA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pinin_SDK_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18949 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1100514 ENTREZGENE
NCBI Gene 18949 ENTREZGENE
PANTHER PININ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12707 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pinin_SDK_memA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pinin_SDK_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pnn PhenoGen
UniProt A0A1W2P6S1_MOUSE UniProtKB/TrEMBL
  O35691 ENTREZGENE, UniProtKB/Swiss-Prot
  Q3TUQ5 ENTREZGENE, UniProtKB/TrEMBL
  Q8CD89 ENTREZGENE
  Q8CGU3 ENTREZGENE
  Q9CV89_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q8CD89 UniProtKB/Swiss-Prot
  Q8CGU3 UniProtKB/Swiss-Prot