Yeats2 (YEATS domain containing 2) - Rat Genome Database

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Gene: Yeats2 (YEATS domain containing 2) Rattus norvegicus
Analyze
Symbol: Yeats2
Name: YEATS domain containing 2
RGD ID: 1566176
Description: Predicted to enable TBP-class protein binding activity; histone binding activity; and modification-dependent protein binding activity. Predicted to be involved in several processes, including chromatin remodeling; histone H3-K14 acetylation; and regulation of protein deacetylation. Predicted to be located in mitotic spindle and nucleus. Predicted to be part of ATAC complex and NuA4 histone acetyltransferase complex. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 4. Orthologous to human YEATS2 (YEATS domain containing 2); PARTICIPATES IN RNA polymerase II transcription initiation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; all-trans-retinoic acid; amphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC498112; RGD1566176; similar to YEATS domain containing 2; YEATS domain-containing protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21180,743,134 - 80,829,253 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1180,743,134 - 80,829,208 (-)Ensembl
Rnor_6.01184,330,064 - 84,595,296 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1184,330,064 - 84,583,542 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01187,394,894 - 87,657,398 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41182,990,683 - 83,064,723 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1179,578,513 - 79,652,095 (-)NCBICelera
Cytogenetic Map11q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:18838386   PMID:20508642   PMID:20562830   PMID:27103431  


Genomics

Comparative Map Data
Yeats2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21180,743,134 - 80,829,253 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1180,743,134 - 80,829,208 (-)Ensembl
Rnor_6.01184,330,064 - 84,595,296 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1184,330,064 - 84,583,542 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01187,394,894 - 87,657,398 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41182,990,683 - 83,064,723 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1179,578,513 - 79,652,095 (-)NCBICelera
Cytogenetic Map11q23NCBI
YEATS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383183,697,797 - 183,812,624 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl3183,697,797 - 183,812,624 (+)EnsemblGRCh38hg38GRCh38
GRCh373183,415,585 - 183,530,412 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363184,898,300 - 185,013,102 (+)NCBINCBI36hg18NCBI36
Build 343184,898,307 - 185,013,110NCBI
Celera3181,858,780 - 181,973,588 (+)NCBI
Cytogenetic Map3q27.1NCBI
HuRef3180,824,952 - 180,939,657 (+)NCBIHuRef
CHM1_13183,380,010 - 183,494,763 (+)NCBICHM1_1
T2T-CHM13v2.03186,507,277 - 186,622,124 (+)NCBI
Yeats2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391619,959,803 - 20,051,323 (+)NCBIGRCm39mm39
GRCm39 Ensembl1619,959,813 - 20,051,323 (+)Ensembl
GRCm381620,141,053 - 20,232,573 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1620,141,063 - 20,232,573 (+)EnsemblGRCm38mm10GRCm38
MGSCv371620,141,136 - 20,232,646 (+)NCBIGRCm37mm9NCBIm37
MGSCv361620,054,651 - 20,146,116 (+)NCBImm8
Celera1620,704,633 - 20,796,345 (+)NCBICelera
Cytogenetic Map16A3NCBI
Yeats2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542023,589,071 - 23,666,680 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542023,590,636 - 23,666,689 (-)NCBIChiLan1.0ChiLan1.0
YEATS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13188,903,750 - 189,014,379 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3188,903,615 - 189,016,942 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03180,736,213 - 180,847,545 (+)NCBIMhudiblu_PPA_v0panPan3
YEATS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13416,654,672 - 16,777,493 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3416,654,493 - 16,777,506 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3420,742,441 - 20,864,885 (+)NCBI
ROS_Cfam_1.03416,562,072 - 16,684,777 (+)NCBI
ROS_Cfam_1.0 Ensembl3416,562,037 - 16,684,774 (+)Ensembl
UMICH_Zoey_3.13416,600,793 - 16,723,030 (+)NCBI
UNSW_CanFamBas_1.03416,587,662 - 16,718,692 (+)NCBI
UU_Cfam_GSD_1.03416,826,018 - 16,948,309 (+)NCBI
Yeats2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602119,912,573 - 119,996,022 (-)NCBI
SpeTri2.0NW_0049365786,004,427 - 6,075,414 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
YEATS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13121,637,866 - 121,746,129 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113121,637,823 - 121,746,131 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213131,074,718 - 131,182,201 (+)NCBISscrofa10.2Sscrofa10.2susScr3
YEATS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1155,607,788 - 5,716,245 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl155,608,775 - 5,700,620 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606314,390,852 - 14,498,807 (-)NCBIVero_WHO_p1.0
Yeats2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473072,693,218 - 72,781,276 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462473072,693,216 - 72,781,611 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D11Uwm1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21180,624,558 - 80,624,732 (+)MAPPERmRatBN7.2
Rnor_6.01184,548,525 - 84,548,698NCBIRnor6.0
Rnor_5.01187,612,001 - 87,612,174UniSTSRnor5.0
RGSC_v3.41182,869,039 - 82,869,212UniSTSRGSC3.4
Celera1179,464,858 - 79,465,021UniSTS
Cytogenetic Map11q23UniSTS
RH132726  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21180,743,375 - 80,743,579 (+)MAPPERmRatBN7.2
Rnor_6.01184,330,306 - 84,330,509NCBIRnor6.0
Rnor_5.01187,395,136 - 87,395,339UniSTSRnor5.0
RGSC_v3.41182,990,925 - 82,991,128UniSTSRGSC3.4
Celera1179,578,755 - 79,578,958UniSTS
RH 3.4 Map11669.7UniSTS
Cytogenetic Map11q23UniSTS
RH132703  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21180,743,375 - 80,743,570 (+)MAPPERmRatBN7.2
Rnor_6.01184,330,306 - 84,330,500NCBIRnor6.0
Rnor_5.01187,395,136 - 87,395,330UniSTSRnor5.0
RGSC_v3.41182,990,925 - 82,991,119UniSTSRGSC3.4
Celera1179,578,755 - 79,578,949UniSTS
RH 3.4 Map11669.7UniSTS
Cytogenetic Map11q23UniSTS
RH143810  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21180,506,031 - 80,506,296 (+)MAPPERmRatBN7.2
Rnor_6.01184,428,176 - 84,428,440NCBIRnor6.0
Rnor_5.01187,493,015 - 87,493,279UniSTSRnor5.0
RGSC_v3.41182,746,829 - 82,747,093UniSTSRGSC3.4
Celera1179,346,070 - 79,346,334UniSTS
RH 3.4 Map11657.9UniSTS
Cytogenetic Map11q23UniSTS
AI555746  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21180,566,968 - 80,567,171 (+)MAPPERmRatBN7.2
Rnor_6.01184,489,927 - 84,490,129NCBIRnor6.0
Rnor_5.01187,554,233 - 87,554,435UniSTSRnor5.0
RGSC_v3.41182,809,070 - 82,809,272UniSTSRGSC3.4
Celera1179,406,937 - 79,407,139UniSTS
RH 3.4 Map11658.0UniSTS
Cytogenetic Map11q23UniSTS
AU047088  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21180,624,412 - 80,624,584 (+)MAPPERmRatBN7.2
Rnor_6.01184,548,379 - 84,548,550NCBIRnor6.0
Rnor_5.01187,611,855 - 87,612,026UniSTSRnor5.0
RGSC_v3.41182,868,893 - 82,869,064UniSTSRGSC3.4
Celera1179,464,710 - 79,464,883UniSTS
Cytogenetic Map11q23UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116642214886241447Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116944607082846715Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)117695713183051965Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:212
Count of miRNA genes:152
Interacting mature miRNAs:187
Transcripts:ENSRNOT00000064212
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 26 39 24 19 24 1 1 74 35 34 11 1
Low 17 18 17 17 7 10 7 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000064212   ⟹   ENSRNOP00000062371
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1180,743,201 - 80,829,208 (-)Ensembl
Rnor_6.0 Ensembl1184,330,064 - 84,583,542 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112615   ⟹   ENSRNOP00000080576
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1180,743,134 - 80,817,119 (-)Ensembl
RefSeq Acc Id: NM_001109057   ⟹   NP_001102527
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21180,743,134 - 80,817,238 (-)NCBI
Rnor_6.01184,330,064 - 84,583,542 (-)NCBI
Rnor_5.01187,394,894 - 87,657,398 (-)NCBI
RGSC_v3.41182,990,683 - 83,064,723 (-)RGD
Celera1179,578,513 - 79,652,095 (-)RGD
Sequence:
RefSeq Acc Id: XM_017598048   ⟹   XP_017453537
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21180,743,197 - 80,817,145 (-)NCBI
Rnor_6.01184,330,127 - 84,583,417 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598049   ⟹   XP_017453538
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21180,743,197 - 80,817,041 (-)NCBI
Rnor_6.01184,330,127 - 84,583,304 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088584   ⟹   XP_038944512
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21180,743,197 - 80,829,253 (-)NCBI
RefSeq Acc Id: XM_039088585   ⟹   XP_038944513
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21180,743,197 - 80,829,253 (-)NCBI
RefSeq Acc Id: XM_039088586   ⟹   XP_038944514
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21180,743,197 - 80,829,253 (-)NCBI
RefSeq Acc Id: XM_039088587   ⟹   XP_038944515
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21180,743,197 - 80,829,253 (-)NCBI
RefSeq Acc Id: XM_039088588   ⟹   XP_038944516
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21180,750,877 - 80,829,253 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001102527   ⟸   NM_001109057
- UniProtKB: D3ZBV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453537   ⟸   XM_017598048
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017453538   ⟸   XM_017598049
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000062371   ⟸   ENSRNOT00000064212
RefSeq Acc Id: XP_038944515   ⟸   XM_039088587
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038944513   ⟸   XM_039088585
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944514   ⟸   XM_039088586
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038944512   ⟸   XM_039088584
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944516   ⟸   XM_039088588
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000080576   ⟸   ENSRNOT00000112615

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZBV9-F1-model_v2 AlphaFold D3ZBV9 1-1405 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
11 84353759 84353760 C T snv M520/N (MCW)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
11 87496153 87496154 T G snv SR/JrHsd (MCW)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
11 82998448 82998449 C A snv FHL/EurMcwi (MCW)
11 83008107 83008108 A T snv SS/JrHsdMcwi (MCW)
11 83008117 83008118 C A snv SS/JrHsdMcwi (MCW)
11 83014474 83014475 C T snv M520/N (KNAW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1566176 AgrOrtholog
BioCyc Gene G2FUF-20712 BioCyc
Ensembl Genes ENSRNOG00000023107 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000062371 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000080576 ENTREZGENE
Ensembl Transcript ENSRNOT00000064212 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000112615 ENTREZGENE
Gene3D-CATH 2.60.40.1970 UniProtKB/TrEMBL
InterPro YEAST_sf UniProtKB/TrEMBL
  YEATS UniProtKB/TrEMBL
KEGG Report rno:498112 UniProtKB/TrEMBL
NCBI Gene 498112 ENTREZGENE
PANTHER YEATS UniProtKB/TrEMBL
Pfam YEATS UniProtKB/TrEMBL
PhenoGen Yeats2 PhenoGen
PROSITE YEATS UniProtKB/TrEMBL
UniProt D3ZBV9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Yeats2  YEATS domain containing 2  RGD1566176_predicted  similar to YEATS domain containing 2 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1566176_predicted  similar to YEATS domain containing 2 (predicted)  LOC498112  similar to YEATS domain containing 2  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498112  similar to YEATS domain containing 2      Symbol and Name status set to provisional 70820 PROVISIONAL