Snrpd1 (small nuclear ribonucleoprotein D1 polypeptide) - Rat Genome Database

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Gene: Snrpd1 (small nuclear ribonucleoprotein D1 polypeptide) Rattus norvegicus
Analyze
Symbol: Snrpd1
Name: small nuclear ribonucleoprotein D1 polypeptide
RGD ID: 1306345
Description: Enables U1 snRNP binding activity. Predicted to be involved in spliceosomal snRNP assembly. Located in nucleus. Part of U1 snRNP. Used to study nephritis; proteinuria; and systemic lupus erythematosus. Human ortholog(s) of this gene implicated in connective tissue disease; nephritis; proteinuria; and systemic lupus erythematosus. Orthologous to human SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide); PARTICIPATES IN spliceosome pathway; systemic lupus erythematosus pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC291794; small nuclear ribonucleoprotein D1; small nuclear ribonucleoprotein Sm D1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2181,696,838 - 1,707,400 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl181,696,852 - 1,708,256 (+)Ensembl
Rnor_6.0181,866,066 - 1,876,613 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,866,080 - 1,876,613 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,898,841 - 1,909,374 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4182,001,140 - 2,011,674 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1182,001,148 - 2,011,601 (+)NCBI
Celera181,578,553 - 1,589,086 (+)NCBICelera
Cytogenetic Map18p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
afimoxifene  (ISO)
all-trans-retinoic acid  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
menadione  (ISO)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
PhIP  (EXP)
piroxicam  (ISO)
propiconazole  (ISO)
rac-lactic acid  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP,ISO)
thalidomide  (ISO)
thioacetamide  (EXP)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
triphenyl phosphate  (EXP)
troglitazone  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
Yessotoxin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:11991638   PMID:12477932   PMID:14524621   PMID:15146077   PMID:15369763   PMID:18984161   PMID:21113136   PMID:21516107   PMID:21630459   PMID:22658674   PMID:22681889   PMID:25555158  
PMID:26912367   PMID:28076346   PMID:28781166  


Genomics

Comparative Map Data
Snrpd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2181,696,838 - 1,707,400 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl181,696,852 - 1,708,256 (+)Ensembl
Rnor_6.0181,866,066 - 1,876,613 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,866,080 - 1,876,613 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,898,841 - 1,909,374 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4182,001,140 - 2,011,674 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1182,001,148 - 2,011,601 (+)NCBI
Celera181,578,553 - 1,589,086 (+)NCBICelera
Cytogenetic Map18p13NCBI
SNRPD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381821,612,314 - 21,633,520 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1821,612,314 - 21,633,524 (+)EnsemblGRCh38hg38GRCh38
GRCh371819,192,275 - 19,213,481 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361817,446,258 - 17,464,206 (+)NCBINCBI36hg18NCBI36
Build 341817,446,257 - 17,464,206NCBI
Celera1815,998,296 - 16,016,243 (+)NCBI
Cytogenetic Map18q11.2NCBI
HuRef1816,039,460 - 16,057,388 (+)NCBIHuRef
CHM1_11819,119,388 - 19,137,336 (+)NCBICHM1_1
T2T-CHM13v2.01821,797,409 - 21,818,615 (+)NCBI
Snrpd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391810,617,796 - 10,628,230 (+)NCBIGRCm39mm39
GRCm39 Ensembl1810,617,775 - 10,642,079 (+)Ensembl
GRCm381810,617,796 - 10,628,230 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1810,617,775 - 10,642,079 (+)EnsemblGRCm38mm10GRCm38
MGSCv371810,617,794 - 10,628,228 (+)NCBIGRCm37mm9NCBIm37
MGSCv361810,617,794 - 10,628,228 (+)NCBImm8
Celera1810,647,794 - 10,658,225 (+)NCBICelera
Cytogenetic Map18A1NCBI
Snrpd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540210,283,970 - 10,296,495 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540210,283,970 - 10,294,869 (+)NCBIChiLan1.0ChiLan1.0
SNRPD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11818,488,929 - 18,506,284 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1818,488,929 - 18,506,284 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01814,851,041 - 14,869,042 (+)NCBIMhudiblu_PPA_v0panPan3
SNRPD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1766,407,313 - 66,421,193 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl766,407,313 - 66,421,194 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha765,861,285 - 65,875,140 (-)NCBI
ROS_Cfam_1.0766,471,679 - 66,485,534 (-)NCBI
ROS_Cfam_1.0 Ensembl766,458,044 - 66,492,690 (-)Ensembl
UMICH_Zoey_3.1766,137,168 - 66,151,090 (-)NCBI
UNSW_CanFamBas_1.0766,160,475 - 66,174,609 (-)NCBI
UU_Cfam_GSD_1.0766,461,808 - 66,475,826 (-)NCBI
Snrpd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494462,481,006 - 62,492,718 (-)NCBI
SpeTri2.0NW_0049365501,323,351 - 1,335,074 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRPD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6106,798,265 - 106,813,816 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16106,798,201 - 106,810,178 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2699,283,755 - 99,295,334 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNRPD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11858,860,447 - 58,876,216 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1858,858,822 - 58,876,198 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605033,640,088 - 33,657,201 (-)NCBIVero_WHO_p1.0
Snrpd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477010,135,425 - 10,147,298 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462477010,134,623 - 10,147,342 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH135451  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.225,204,172 - 5,204,299 (+)MAPPERmRatBN7.2
mRatBN7.2181,707,140 - 1,707,267 (+)MAPPERmRatBN7.2
Rnor_6.0181,876,354 - 1,876,480NCBIRnor6.0
Rnor_6.022,470,983 - 2,471,109NCBIRnor6.0
Rnor_5.0181,909,115 - 1,909,241UniSTSRnor5.0
Rnor_5.022,464,151 - 2,464,277UniSTSRnor5.0
RGSC_v3.422,739,783 - 2,739,909UniSTSRGSC3.4
RGSC_v3.4182,011,415 - 2,011,541UniSTSRGSC3.4
Celera181,588,827 - 1,588,953UniSTS
Celera21,675,742 - 1,675,868UniSTS
Cytogenetic Map2q11UniSTS
Cytogenetic Map18p13UniSTS
RH124565  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2925,556,361 - 25,556,542 (+)MAPPERmRatBN7.2
Rnor_6.0929,361,761 - 29,361,941NCBIRnor6.0
Rnor_5.0928,199,531 - 28,199,711UniSTSRnor5.0
RGSC_v3.4921,960,628 - 21,960,808UniSTSRGSC3.4
Celera923,105,209 - 23,105,389UniSTS
Cytogenetic Map18p13UniSTS
AW464517  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2181,702,901 - 1,702,997 (+)MAPPERmRatBN7.2
mRatBN7.2925,556,248 - 25,556,351 (+)MAPPERmRatBN7.2
Rnor_6.0929,361,648 - 29,361,750NCBIRnor6.0
Rnor_5.0928,199,418 - 28,199,520UniSTSRnor5.0
RGSC_v3.4921,960,515 - 21,960,617UniSTSRGSC3.4
Celera923,105,096 - 23,105,198UniSTS
Cytogenetic Map18p13UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:350
Count of miRNA genes:217
Interacting mature miRNAs:251
Transcripts:ENSRNOT00000018646
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 37 55 39 19 39 4 6 74 35 41 11 4
Low 6 2 2 2 4 5 4
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000018646   ⟹   ENSRNOP00000018646
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl181,696,852 - 1,708,256 (+)Ensembl
Rnor_6.0 Ensembl181,866,080 - 1,876,613 (+)Ensembl
RefSeq Acc Id: NM_001106163   ⟹   NP_001099633
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2181,696,866 - 1,707,400 (+)NCBI
Rnor_6.0181,866,080 - 1,876,613 (+)NCBI
Rnor_5.0181,898,841 - 1,909,374 (+)NCBI
RGSC_v3.4182,001,140 - 2,011,674 (+)RGD
Celera181,578,553 - 1,589,086 (+)RGD
Sequence:
RefSeq Acc Id: XM_008771943   ⟹   XP_008770165
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2181,696,838 - 1,707,344 (+)NCBI
Rnor_6.0181,866,066 - 1,876,448 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039096755   ⟹   XP_038952683
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2181,697,173 - 1,707,344 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001099633 (Get FASTA)   NCBI Sequence Viewer  
  XP_008770165 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952683 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI67095 (Get FASTA)   NCBI Sequence Viewer  
  EDL86672 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001099633   ⟸   NM_001106163
- UniProtKB: B2RZB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770165   ⟸   XM_008771943
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000018646   ⟸   ENSRNOT00000018646
RefSeq Acc Id: XP_038952683   ⟸   XM_039096755
- Peptide Label: isoform X1
Protein Domains
Sm

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RZB7-F1-model_v2 AlphaFold B2RZB7 1-119 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700630
Promoter ID:EPDNEW_R11154
Type:initiation region
Name:Snrpd1_1
Description:small nuclear ribonucleoprotein D1 polypeptide
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0181,866,109 - 1,866,169EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306345 AgrOrtholog
BioCyc Gene G2FUF-8411 BioCyc
Ensembl Genes ENSRNOG00000013714 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000018646 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018646 ENTREZGENE, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9091450 IMAGE-MGC_LOAD
InterPro LSm4/Sm_D1/D3 UniProtKB/TrEMBL
  LSM_domain UniProtKB/TrEMBL
  LSM_related_domain UniProtKB/TrEMBL
  Sm_D1 UniProtKB/TrEMBL
KEGG Report rno:291794 UniProtKB/TrEMBL
MGC_CLONE MGC:189532 IMAGE-MGC_LOAD
NCBI Gene 291794 ENTREZGENE
PANTHER PTHR23338 UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PhenoGen Snrpd1 PhenoGen
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP Sm_like_riboprot UniProtKB/TrEMBL
UniProt B2RZB7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-21 Snrpd1  small nuclear ribonucleoprotein D1 polypeptide  Snrpd1  small nuclear ribonucleoprotein D1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Snrpd1  small nuclear ribonucleoprotein D1   Snrpd1_predicted  small nuclear ribonucleoprotein D1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Snrpd1_predicted  small nuclear ribonucleoprotein D1 (predicted)      Symbol and Name status set to approved 70820 APPROVED