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Gene: Tcea2 (transcription elongation factor A2) Rattus norvegicus

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Symbol:

Tcea2

Name:

transcription elongation factor A2

RGD ID:

61825

Description:

Predicted to enable DNA binding activity and zinc ion binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in centrosome; ciliary basal body; and nucleoplasm. Predicted to be active in nucleus. Orthologous to human TCEA2 (transcription elongation factor A2); PARTICIPATES IN RNA polymerase II transcription elongation pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

testis-specific S-II; transcription elongation factor A (SII) 2; transcription elongation factor A (SII), 2; transcription elongation factor A protein 2; transcription elongation factor S-II protein 2; transcription elongation factor TFIIS.l

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TCEA2 (transcription elongation factor A2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB
Mus musculus (house mouse):	Tcea2 (transcription elongation factor A (SII), 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tcea2 (transcription elongation factor A2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TCEA2 (transcription elongation factor A2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TCEA2 (transcription elongation factor A2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tcea2 (transcription elongation factor A2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TCEA2 (transcription elongation factor A2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TCEA2 (transcription elongation factor A2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tcea2 (transcription elongation factor A2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TCEA1 (transcription elongation factor A1)	HGNC	OrthoDB
Alliance orthologs ³
Mus musculus (house mouse):	Tcea2 (transcription elongation factor A (SII), 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TCEA2 (transcription elongation factor A2)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tcea2 (transcription elongation factor A (SII), 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	DST1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG8117	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Caenorhabditis elegans (roundworm):	T24H10.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	TfIIS	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	189,173,756 - 189,181,633 (+)	NCBI		GRCr8
mRatBN7.2	3	168,796,244 - 168,804,125 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	168,796,331 - 168,804,116 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	173,175,741 - 173,183,550 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	182,134,832 - 182,142,641 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	178,797,259 - 178,805,065 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	177,187,686 - 177,195,898 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	177,188,044 - 177,195,894 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	180,896,548 - 180,904,402 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	170,831,286 - 170,839,091 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	170,737,321 - 170,745,127 (+)	NCBI
Celera	3	163,783,634 - 163,791,446 (-)	NCBI		Celera
Cytogenetic Map	3	q43	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute myeloid leukemia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(2,4,5-trichlorophenoxy)acetic acid (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

acrylamide (ISO)

aldrin (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

calcitriol (ISO)

choline (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dibutyl phthalate (ISO)

disulfiram (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

folic acid (ISO)

gentamycin (EXP)

indometacin (ISO)

isobutanol (ISO)

L-methionine (ISO)

methotrexate (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

obeticholic acid (ISO)

paracetamol (EXP,ISO)

parathion (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

quercitrin (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

vitamin E (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

positive regulation of transcription by RNA polymerase II (IDA)

regulation of transcription by RNA polymerase II (IBA)

transcription elongation by RNA polymerase II (IEA)

Cellular Component

centrosome (IEA,ISO)

ciliary basal body (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA)

Molecular Function

DNA binding (IEA)

metal ion binding (IEA)

nucleic acid binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase II transcription elongation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Control of transcriptional elongation.	Kwak H and Lis JT, Annu Rev Genet. 2013;47:483-508. doi: 10.1146/annurev-genet-110711-155440. Epub 2013 Sep 11.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Comprehensive gene review and curation	RGD comprehensive gene curation
10.	Cloning and identification of testis-specific transcription elongation factor S-II.	Xu Q, etal., J Biol Chem 1994 Jan 28;269(4):3100-3.

Genomics

Comparative Map Data

Tcea2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	189,173,756 - 189,181,633 (+)	NCBI		GRCr8
mRatBN7.2	3	168,796,244 - 168,804,125 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	168,796,331 - 168,804,116 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	173,175,741 - 173,183,550 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	182,134,832 - 182,142,641 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	178,797,259 - 178,805,065 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	177,187,686 - 177,195,898 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	177,188,044 - 177,195,894 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	180,896,548 - 180,904,402 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	170,831,286 - 170,839,091 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	170,737,321 - 170,745,127 (+)	NCBI
Celera	3	163,783,634 - 163,791,446 (-)	NCBI		Celera
Cytogenetic Map	3	q43	NCBI

TCEA2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	64,055,596 - 64,072,347 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	64,049,836 - 64,072,347 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	62,688,325 - 62,703,700 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	62,158,883 - 62,174,143 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	62,158,882 - 62,174,144	NCBI
Celera	20	59,374,545 - 59,389,785 (+)	NCBI		Celera
Cytogenetic Map	20	q13.33	NCBI
HuRef	20	59,422,225 - 59,437,466 (+)	NCBI		HuRef
CHM1_1	20	62,589,462 - 62,604,716 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	65,875,622 - 65,892,426 (+)	NCBI		T2T-CHM13v2.0

Tcea2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	181,322,090 - 181,329,860 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	181,322,103 - 181,329,864 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	181,680,297 - 181,688,067 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	181,680,310 - 181,688,071 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	181,415,015 - 181,422,756 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	181,609,716 - 181,617,457 (+)	NCBI		MGSCv36	mm8
Celera	2	185,762,702 - 185,770,433 (+)	NCBI		Celera
Cytogenetic Map	2	H4	NCBI
cM Map	2	103.72	NCBI

Tcea2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955528	186,642 - 194,058 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955528	186,642 - 194,058 (-)	NCBI	ChiLan1.0	ChiLan1.0

TCEA2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	69,880,980 - 69,890,213 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	69,873,001 - 69,882,229 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	20	61,977,338 - 61,986,592 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	61,976,869 - 61,986,592 (+)	Ensembl	panpan1.1		panPan2

TCEA2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	47,508,161 - 47,512,399 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	47,508,136 - 47,537,250 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	46,639,396 - 46,646,271 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	48,644,476 - 48,651,329 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	24	47,489,097 - 47,495,956 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	47,613,543 - 47,620,400 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	48,352,514 - 48,359,386 (+)	NCBI		UU_Cfam_GSD_1.0

Tcea2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	195,789,352 - 195,796,792 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	11,242,739 - 11,250,260 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	11,243,021 - 11,251,216 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TCEA2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	62,866,377 - 62,888,787 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	62,866,594 - 62,888,790 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TCEA2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	174,158 - 184,237 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	174,134 - 182,943 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	47,607,379 - 47,629,161 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tcea2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	29,692,006 - 29,699,383 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	29,691,983 - 29,699,383 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tcea2
9 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	148
Count of miRNA genes:	112
Interacting mature miRNAs:	116
Transcripts:	ENSRNOT00000022073
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	131635904	169034231	Rat
1300161	Rf10	Renal function QTL 10	3.57		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	3	161192952	169034231	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	130656562	169034231	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	145956084	169034231	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141074471	169034231	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	130656562	169034231	Rat
2317883	Alcrsp26	Alcohol response QTL 26	1.8	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	3	145526770	169034231	Rat
8552952	Pigfal13	Plasma insulin-like growth factor 1 level QTL 13			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	138799500	169034231	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	124122556	169034231	Rat
2298477	Eau4	Experimental allergic uveoretinitis QTL 4		0.0011	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	3	137398739	169034231	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_057098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC118105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D12927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000022073 ⟹ ENSRNOP00000022073

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	168,796,331 - 168,804,116 (+)	Ensembl
Rnor_6.0 Ensembl	3	177,188,044 - 177,195,894 (+)	Ensembl

RefSeq Acc Id:

NM_057098 ⟹ NP_476439

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,173,826 - 189,181,632 (+)	NCBI
mRatBN7.2	3	168,796,317 - 168,804,123 (+)	NCBI
Rnor_6.0	3	177,188,063 - 177,195,870 (+)	NCBI
Rnor_5.0	3	180,896,548 - 180,904,402 (+)	NCBI
RGSC_v3.4	3	170,831,286 - 170,839,091 (+)	RGD
Celera	3	163,783,634 - 163,791,446 (-)	RGD

Sequence:

show sequence

CGGACCGCGGATCTAGGCGGCGGCGGCCGAGGTCCGGCCGGGCGGCGCAACCGGCGCAATCCGC
CGCCACCGAGGTAGTGATGGGCAAGGAGGAGGAGATTGCTCGTATCGCCCGGAGGCTGGACAAA
ATGGTGACCAGGAAGAACGCGGAGGGAGCCATGGATTTGCTGCGGGAGCTGAAGAATATGCCTA
TTACATTGCACTTGCTCCAGTCCACCCGTGTTGGGATGTCTGTCAACGCTCTGCGGAAGCAGAG
TTCAGACGAGGAGCTCATTGCACTTGCCAAGTCCCTCATCAAGTCCTGGAAGAAGCTCTTGGAT
GTTTCTGATGGCAAATCCAGGGATCAAGGGAGGGGCACACCTTTGCCTACATCGTCCTCAAAGG
ATGCCTCAGGGACTACGGATCTCAGCTGCAAGAAACCAGACCCACCTAGGACCTCATCCACTCC
GAGGATCACCACATTTCCCCAAGTGCCCATCACCTGTGATGCTGTGCGAAACAAATGTCGTGAG
ATGCTGACTTTGGCCCTGCAAACTGACCACGACCACGTGGCTGTTGGTGTGAGCTGTGAGCATC
TGTCATCTCAGATCGAGGAGTGCATCTTCCTGGATGTGGGAAACACTGACATGAAGTACAAGAA
CCGTGTTCGGAGCCGAATCTCTAACCTGAAAGATGCCAAGAACCCTGGCCTACGCCGGAATGTG
TTGTGTGGTGCCATTACACCCCAGCAGATAGCTGTGATGACATCAGAGGAGATGGCCAGTGACG
AGCTGAAGGAGATCCGCAAGGCTATGACCAAGGAGGCCATCCGAGAGCACCAGATGGCCCGTAC
AGGTGGCACACAGACCGACCTGTTCACCTGCAACAAGTGCAGGAAGAAGAACTGCACCTACACG
CAGGTGCAGACCCGTAGCTCTGATGAGCCCATGACCACCTATGTTGTCTGCAATGAGTGTGGGA
ATCGATGGAAGTTCTGCTGAGTCCTTGTACTGATGTAGCCCTGGCCATGGCTAACCCTGAACCT
CCTGCAACGCTCTTGGTGGACACAGCTTCTCTGGAGATACCCTGCAGGTGGCATGCCCCGTTCC
AGCCTGCCTGGTGTGCACCTGCCTGCCCTTTGCCCCTCATCATTAAATGTTTCTTTTTGCCTT

hide sequence

RefSeq Acc Id:

XM_006235740 ⟹ XP_006235802

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,173,767 - 189,181,633 (+)	NCBI
mRatBN7.2	3	168,796,256 - 168,804,125 (+)	NCBI
Rnor_6.0	3	177,188,013 - 177,195,898 (+)	NCBI
Rnor_5.0	3	180,896,548 - 180,904,402 (+)	NCBI

Sequence:

show sequence

TTTTTTTTTTTTTTTTAATTGTATTGCACGCGGCCGCCAGGCGGAGGTTTGGACCGCGGATCTA
GGCGGCGGCGGCCGAGGTCCGGCCGGGCGGCGCAACCGGCGCAATCCGCCGCCACCGAGGTAGT
GATGGGCAAGGAGGAGGAGATTGCTCGTATCGCCCGGAGGCTGGACAAAATGGTGACCAGGAAG
AACGCGGTGAAGGGGCGCGGGCCGCCAGGACCCTGGGGCCCCGCTCCGTGGACACCGTCTGAAT
GAAACCTAGCCCAGGCAGTCGAGACCCCTTGCCCAGGCCCGCCCTCCACCCTGCCGCTTCGCTA
TGGACGCCACGCTGACCGAGAGCCGCCCTCTGTTCGTCGCCCGGCGGTGGCCGCGGGCGTTCTT
GGCCCAGCCGTTGTCTCCCCTGTCTGCCCCCACCCTTCAGAACCAGGAGGGAGCCATGGATTTG
CTGCGGGAGCTGAAGAATATGCCTATTACATTGCACTTGCTCCAGTCCACCCGTGTTGGGATGT
CTGTCAACGCTCTGCGGAAGCAGAGTTCAGACGAGGAGCTCATTGCACTTGCCAAGTCCCTCAT
CAAGTCCTGGAAGAAGCTCTTGGATGTTTCTGATGGCAAATCCAGGGATCAAGGGAGGGGCACA
CCTTTGCCTACATCGTCCTCAAAGGATGCCTCAGGGACTACGGATCTCAGGCTTTGTCTCTCTA
GCTGCAAGAAACCAGACCCACCTAGGACCTCATCCACTCCGAGGATCACCACATTTCCCCAAGT
GCCCATCACCTGTGATGCTGTGCGAAACAAATGTCGTGAGATGCTGACTTTGGCCCTGCAAACT
GACCACGACCACGTGGCTGTTGGTGTGAGCTGTGAGCATCTGTCATCTCAGATCGAGGAGTGCA
TCTTCCTGGATGTGGGAAACACTGACATGAAGTACAAGAACCGTGTTCGGAGCCGAATCTCTAA
CCTGAAAGATGCCAAGAACCCTGGCCTACGCCGGAATGTGTTGTGTGGTGCCATTACACCCCAG
CAGATAGCTGTGATGACATCAGAGGAGATGGCCAGTGACGAGCTGAAGGAGATCCGCAAGGCTA
TGACCAAGGAGGCCATCCGAGAGCACCAGATGGCCCGTACAGGTGGCACACAGACCGACCTGTT
CACCTGCAACAAGTGCAGGAAGAAGAACTGCACCTACACGCAGGTGCAGACCCGTAGCTCTGAT
GAGCCCATGACCACCTATGTTGTCTGCAATGAGTGTGGGAATCGATGGAAGTTCTGCTGAGTCC
TTGTACTGATGTAGCCCTGGCCATGGCTAACCCTGAACCTCCTGCAACGCTCTTGGTGGACACA
GCTTCTCTGGAGATACCCTGCAGGTGGCATGCCCCGTTCCAGCCTGCCTGGTGTGCACCTGCCT
GCCCTTTGCCCCTCATCATTAAATGTTTCTTTTTTGCCTTCCTCTGGCCTTGCTCCTAATGGGC
TAAA

hide sequence

RefSeq Acc Id:

XM_006235741 ⟹ XP_006235803

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,173,773 - 189,181,633 (+)	NCBI
mRatBN7.2	3	168,796,275 - 168,804,125 (+)	NCBI
Rnor_6.0	3	177,188,014 - 177,195,898 (+)	NCBI
Rnor_5.0	3	180,896,548 - 180,904,402 (+)	NCBI

Sequence:

show sequence

TTTTTTTTTTTTTTTAATTGTATTGCACGCGGCCGCCAGGCGGAGGTTTGGACCGCGGATCTAG
GCGGCGGCGGCCGAGGTCCGGCCGGGCGGCGCAACCGGCGCAATCCGCCGCCACCGAGGTAGTG
ATGGGCAAGGAGGAGGAGATTGCTCGTATCGCCCGGAGGCTGGACAAAATGGTGACCAGGAAGA
ACGCGGTGAAGGGGCGCGGGCCGCCAGGACCCTGGGGCCCCGCTCCGTGGACACCGTCTGAATG
AAACCTAGCCCAGGCAGTCGAGACCCCTTGCCCAGGCCCGCCCTCCACCCTGCCGCTTCGCTAT
GGACGCCACGCTGACCGAGAGCCGCCCTCTGTTCGTCGCCCGGCGGTGGCCGCGGGCGTTCTTG
GCCCAGCCGTTGTCTCCCCTGTCTGCCCCCACCCTTCAGAACCAGGAGGGAGCCATGGATTTGC
TGCGGGAGCTGAAGAATATGCCTATTACATTGCACTTGCTCCAGTCCACCCGTGTTGGGATGTC
TGTCAACGCTCTGCGGAAGCAGAGTTCAGACGAGGAGCTCATTGCACTTGCCAAGTCCCTCATC
AAGTCCTGGAAGAAGCTCTTGGATGTTTCTGATGGCAAATCCAGGGATCAAGGGAGGGGCACAC
CTTTGCCTACATCGTCCTCAAAGGATGCCTCAGGGACTACGGATCTCAGCTGCAAGAAACCAGA
CCCACCTAGGACCTCATCCACTCCGAGGATCACCACATTTCCCCAAGTGCCCATCACCTGTGAT
GCTGTGCGAAACAAATGTCGTGAGATGCTGACTTTGGCCCTGCAAACTGACCACGACCACGTGG
CTGTTGGTGTGAGCTGTGAGCATCTGTCATCTCAGATCGAGGAGTGCATCTTCCTGGATGTGGG
AAACACTGACATGAAGTACAAGAACCGTGTTCGGAGCCGAATCTCTAACCTGAAAGATGCCAAG
AACCCTGGCCTACGCCGGAATGTGTTGTGTGGTGCCATTACACCCCAGCAGATAGCTGTGATGA
CATCAGAGGAGATGGCCAGTGACGAGCTGAAGGAGATCCGCAAGGCTATGACCAAGGAGGCCAT
CCGAGAGCACCAGATGGCCCGTACAGGTGGCACACAGACCGACCTGTTCACCTGCAACAAGTGC
AGGAAGAAGAACTGCACCTACACGCAGGTGCAGACCCGTAGCTCTGATGAGCCCATGACCACCT
ATGTTGTCTGCAATGAGTGTGGGAATCGATGGAAGTTCTGCTGAGTCCTTGTACTGATGTAGCC
CTGGCCATGGCTAACCCTGAACCTCCTGCAACGCTCTTGGTGGACACAGCTTCTCTGGAGATAC
CCTGCAGGTGGCATGCCCCGTTCCAGCCTGCCTGGTGTGCACCTGCCTGCCCTTTGCCCCTCAT
CATTAAATGTTTCTTTTTTGCCTTCCTCTGGCCTTGCTCCTAATGGGCTAAA

hide sequence

RefSeq Acc Id:

XM_006235742 ⟹ XP_006235804

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,173,756 - 189,181,633 (+)	NCBI
mRatBN7.2	3	168,796,244 - 168,804,125 (+)	NCBI
Rnor_6.0	3	177,188,014 - 177,195,898 (+)	NCBI
Rnor_5.0	3	180,896,548 - 180,904,402 (+)	NCBI

Sequence:

show sequence

TTTTTTTTTTTTTTTAATTGTATTGCACGCGGCCGCCAGGCGGAGGTTTGGACCGCGGATCTAG
GCGGCGGCGGCCGAGGTCCGGCCGGGCGGCGCAACCGGCGCAATCCGCCGCCACCGAGGTAGTG
ATGGGCAAGGAGGAGGAGATTGCTCGTATCGCCCGGAGGCTGGACAAAATGGTGACCAGGAAGA
ACGCGGAGGGAGCCATGGATTTGCTGCGGGAGCTGAAGAATATGCCTATTACATTGCACTTGCT
CCAGTCCACCCGTGTTGGGATGTCTGTCAACGCTCTGCGGAAGCAGAGTTCAGACGAGGAGCTC
ATTGCACTTGCCAAGTCCCTCATCAAGTCCTGGAAGAAGCTCTTGGATGTTTCTGATGGCAAAT
CCAGGGATCAAGGGAGGGGCACACCTTTGCCTACATCGTCCTCAAAGGATGCCTCAGGGACTAC
GGATCTCAGGCTTTGTCTCTCTAGCTGCAAGAAACCAGACCCACCTAGGACCTCATCCACTCCG
AGGATCACCACATTTCCCCAAGTGCCCATCACCTGTGATGCTGTGCGAAACAAATGTCGTGAGA
TGCTGACTTTGGCCCTGCAAACTGACCACGACCACGTGGCTGTTGGTGTGAGCTGTGAGCATCT
GTCATCTCAGATCGAGGAGTGCATCTTCCTGGATGTGGGAAACACTGACATGAAGTACAAGAAC
CGTGTTCGGAGCCGAATCTCTAACCTGAAAGATGCCAAGAACCCTGGCCTACGCCGGAATGTGT
TGTGTGGTGCCATTACACCCCAGCAGATAGCTGTGATGACATCAGAGGAGATGGCCAGTGACGA
GCTGAAGGAGATCCGCAAGGCTATGACCAAGGAGGCCATCCGAGAGCACCAGATGGCCCGTACA
GGTGGCACACAGACCGACCTGTTCACCTGCAACAAGTGCAGGAAGAAGAACTGCACCTACACGC
AGGTGCAGACCCGTAGCTCTGATGAGCCCATGACCACCTATGTTGTCTGCAATGAGTGTGGGAA
TCGATGGAAGTTCTGCTGAGTCCTTGTACTGATGTAGCCCTGGCCATGGCTAACCCTGAACCTC
CTGCAACGCTCTTGGTGGACACAGCTTCTCTGGAGATACCCTGCAGGTGGCATGCCCCGTTCCA
GCCTGCCTGGTGTGCACCTGCCTGCCCTTTGCCCCTCATCATTAAATGTTTCTTTTTTGCCTTC
CTCTGGCCTTGCTCCTAATGGGCTAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_476439	(Get FASTA)	NCBI Sequence Viewer
	XP_006235802	(Get FASTA)	NCBI Sequence Viewer
	XP_006235803	(Get FASTA)	NCBI Sequence Viewer
	XP_006235804	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAA02310	(Get FASTA)	NCBI Sequence Viewer
	EDL88691	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000022073
	ENSRNOP00000022073.6
	ENSRNOP00000112743
GenBank Protein	Q63799	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_476439 ⟸ NM_057098

- UniProtKB:

Q63799 (UniProtKB/Swiss-Prot), A0A8L2QBN2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGKEEEIARIARRLDKMVTRKNAEGAMDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEEL
IALAKSLIKSWKKLLDVSDGKSRDQGRGTPLPTSSSKDASGTTDLSCKKPDPPRTSSTPRITTF
PQVPITCDAVRNKCREMLTLALQTDHDHVAVGVSCEHLSSQIEECIFLDVGNTDMKYKNRVRSR
ISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQT
DLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWKFC

hide sequence

RefSeq Acc Id:	XP_006235804 ⟸ XM_006235742
- Peptide Label:	isoform X3
- UniProtKB:	A0A8L2QBN2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKEEEIARIARRLDKMVTRKNAEGAMDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEEL IALAKSLIKSWKKLLDVSDGKSRDQGRGTPLPTSSSKDASGTTDLRLCLSSCKKPDPPRTSSTP RITTFPQVPITCDAVRNKCREMLTLALQTDHDHVAVGVSCEHLSSQIEECIFLDVGNTDMKYKN RVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMART GGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWKFC hide sequence

RefSeq Acc Id:	XP_006235802 ⟸ XM_006235740
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QBN2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDATLTESRPLFVARRWPRAFLAQPLSPLSAPTLQNQEGAMDLLRELKNMPITLHLLQSTRVGM SVNALRKQSSDEELIALAKSLIKSWKKLLDVSDGKSRDQGRGTPLPTSSSKDASGTTDLRLCLS SCKKPDPPRTSSTPRITTFPQVPITCDAVRNKCREMLTLALQTDHDHVAVGVSCEHLSSQIEEC IFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKA MTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWKFC hide sequence

RefSeq Acc Id:	XP_006235803 ⟸ XM_006235741
- Peptide Label:	isoform X2
- UniProtKB:	A0A8L2QBN2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDATLTESRPLFVARRWPRAFLAQPLSPLSAPTLQNQEGAMDLLRELKNMPITLHLLQSTRVGM SVNALRKQSSDEELIALAKSLIKSWKKLLDVSDGKSRDQGRGTPLPTSSSKDASGTTDLSCKKP DPPRTSSTPRITTFPQVPITCDAVRNKCREMLTLALQTDHDHVAVGVSCEHLSSQIEECIFLDV GNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEA IREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWKFC hide sequence

Ensembl Acc Id:

ENSRNOP00000022073 ⟸ ENSRNOT00000022073

Protein Domains

TFIIS central TFIIS N-terminal TFIIS-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q63799-F1-model_v2	AlphaFold	Q63799	1-299	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692764

Promoter ID:

EPDNEW_R3287

Type:

initiation region

Name:

Tcea2_1

Description:

transcription elongation factor A2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	177,188,033 - 177,188,093	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:61825	AgrOrtholog
BioCyc Gene	G2FUF-46263	BioCyc
Ensembl Genes	ENSRNOG00000016288	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000022073	ENTREZGENE
	ENSRNOT00000022073.8	UniProtKB/TrEMBL
	ENSRNOT00000130150	ENTREZGENE
Gene3D-CATH	1.10.472.30	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	1.20.930.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.20.25.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	TF_IIS-typ	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFIIS/CRSP70_N_sub	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFIIS/LEDGF_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFIIS_cen_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFIIS_cen_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFIIS_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFSII	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_TFIIS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:29575	UniProtKB/Swiss-Prot
NCBI Gene	29575	ENTREZGENE
PANTHER	TRANSCRIPTION ELONGATION FACTOR A PROTEIN 2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Med26	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFIIS_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFIIS_M	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Tcea2	PhenoGen
PIRSF	TF_IIS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	TFIIS_CENTRAL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFIIS_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZF_TFIIS_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZF_TFIIS_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000016288	RatGTEx
SMART	TFS2M	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFS2N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZnF_C2C2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF46942	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF47676	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Zinc beta-ribbon	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8L2QBN2	ENTREZGENE, UniProtKB/TrEMBL
	A6KLY3_RAT	UniProtKB/TrEMBL
	Q63799	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-19	Tcea2	transcription elongation factor A2	Tcea2	transcription elongation factor A (SII), 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Tcea2	transcription elongation factor A (SII), 2		transcription elongation factor A2	Name updated	1299863	APPROVED
2002-06-10	Tcea2	transcription elongation factor A2			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	mRNA expressed specifically in testis	619610
gene_protein	predicted protein contains 299 aa residues	619610

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

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Imported Disease Annotations - CTD

RGD Manual Annotations