Hnrnpa0 (heterogeneous nuclear ribonucleoprotein A0) - Rat Genome Database

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Gene: Hnrnpa0 (heterogeneous nuclear ribonucleoprotein A0) Rattus norvegicus
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Symbol: Hnrnpa0
Name: heterogeneous nuclear ribonucleoprotein A0
RGD ID: 1563684
Description: ENCODES a protein that exhibits mRNA 3'-UTR AU-rich region binding (ortholog); protein kinase binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA stabilization (ortholog); inflammatory response (ortholog); response to lipopolysaccharide (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH autosomal dominant non-syndromic intellectual disability 31 (ortholog); autosomal dominant nonsyndromic deafness 1 (ortholog); familial adenomatous polyposis 1 (ortholog); FOUND IN nucleoplasm (ortholog); INTERACTS WITH methapyrilene; 1,2-dichloroethane (ortholog); 1,2-dimethylhydrazine (ortholog)
Type: protein-coding
Also known as: Hnrpa0; LOC498696; RGD1563684; similar to heterogeneous nuclear ribonucleoprotein A0
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
RGSC_v3.41712,452,030 - 12,452,914 (+)NCBIRGSC3.4rn4RGSC3.4
Celera176,617,417 - 6,618,097 (+)NCBICelera
Cytogenetic Map17p14NCBI


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:12456657   PMID:20932473   PMID:21873635   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Hnrnpa0
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
RGSC_v3.41712,452,030 - 12,452,914 (+)NCBIRGSC3.4rn4RGSC3.4
Celera176,617,417 - 6,618,097 (+)NCBICelera
Cytogenetic Map17p14NCBI
HNRNPA0
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5137,745,651 - 137,754,363 (-)EnsemblGRCh38hg38GRCh38
GRCh385137,745,651 - 137,754,363 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh375137,081,340 - 137,090,052 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365137,114,972 - 137,117,938 (-)NCBINCBI36hg18NCBI36
Build 345137,114,973 - 137,117,938NCBI
Celera5133,208,508 - 133,211,474 (-)NCBI
Cytogenetic Map5q31.2NCBI
HuRef5132,277,733 - 132,280,699 (-)NCBIHuRef
CHM1_15136,519,671 - 136,522,637 (-)NCBICHM1_1
Hnrnpa0
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391358,273,693 - 58,276,370 (-)NCBIGRCm39mm39
GRCm39 Ensembl1358,273,693 - 58,276,370 (-)Ensembl
GRCm381358,125,879 - 58,128,556 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1358,125,879 - 58,128,556 (-)EnsemblGRCm38mm10GRCm38
MGSCv371358,227,240 - 58,229,917 (-)NCBIGRCm37mm9NCBIm37
MGSCv361358,135,497 - 58,138,179 (-)NCBImm8
Celera1359,188,312 - 59,191,005 (-)NCBICelera
Cytogenetic Map13B1NCBI
Hnrnpa0
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540832,718,736 - 32,719,409 (-)NCBIChiLan1.0ChiLan1.0
HNRNPA0
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15139,275,249 - 139,278,250 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5139,277,004 - 139,277,939 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05133,132,030 - 133,140,771 (-)NCBIMhudiblu_PPA_v0panPan3
HNRNPA0
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11125,464,601 - 25,467,460 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1125,466,185 - 25,467,117 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1124,221,624 - 24,224,449 (-)NCBI
ROS_Cfam_1.01126,307,823 - 26,310,665 (-)NCBI
UMICH_Zoey_3.11125,015,201 - 25,018,057 (-)NCBI
UNSW_CanFamBas_1.01124,839,048 - 24,841,888 (-)NCBI
UU_Cfam_GSD_1.01125,501,674 - 25,504,531 (-)NCBI
Hnrnpa0
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213125,687,294 - 125,690,045 (-)NCBI
SpeTri2.0NW_0049365974,712,201 - 4,714,949 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPA0
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2139,779,867 - 139,783,159 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12139,779,865 - 139,783,016 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22145,501,462 - 145,504,543 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HNRNPA0
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12340,433,429 - 40,436,188 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2340,435,002 - 40,435,913 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603437,455,662 - 37,458,472 (+)NCBIVero_WHO_p1.0
Hnrnpa0
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247339,265,784 - 9,271,559 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH79130  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2176,509,140 - 6,509,273 (+)MAPPERmRatBN7.2
Rnor_6.0176,910,901 - 6,911,033NCBIRnor6.0
Rnor_5.0179,113,542 - 9,113,674UniSTSRnor5.0
RGSC_v3.41712,453,164 - 12,453,296UniSTSRGSC3.4
Celera176,618,347 - 6,618,479UniSTS
Cytogenetic Map17p14UniSTS
RH127764  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2176,509,984 - 6,510,186 (+)MAPPERmRatBN7.2
Rnor_6.0176,911,745 - 6,911,946NCBIRnor6.0
Rnor_5.0179,114,386 - 9,114,587UniSTSRnor5.0
RGSC_v3.41712,454,008 - 12,454,209UniSTSRGSC3.4
Celera176,619,191 - 6,619,392UniSTS
RH 3.4 Map1767.3UniSTS
Cytogenetic Map17p14UniSTS
AA858784  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2176,509,091 - 6,509,241 (+)MAPPERmRatBN7.2
Rnor_6.0176,910,852 - 6,911,001NCBIRnor6.0
Rnor_5.0179,113,493 - 9,113,642UniSTSRnor5.0
RGSC_v3.41712,453,115 - 12,453,264UniSTSRGSC3.4
Celera176,618,298 - 6,618,447UniSTS
RH 3.4 Map1771.6UniSTS
Cytogenetic Map17p14UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:64
Count of miRNA genes:63
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000061231
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003752953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003752953   ⟹   XP_003753001
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera176,617,417 - 6,618,097 (+)NCBI

Additional Information

Database Acc Id Source(s)
NCBI Gene 498696 ENTREZGENE
PhenoGen Hnrnpa0 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 RGD1563684  similar to heterogeneous nuclear ribonucleoprotein A0   RGD1563684_predicted  similar to heterogeneous nuclear ribonucleoprotein A0 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563684_predicted  similar to heterogeneous nuclear ribonucleoprotein A0 (predicted)  LOC498696  similar to heterogeneous nuclear ribonucleoprotein A0  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498696  similar to heterogeneous nuclear ribonucleoprotein A0      Symbol and Name status set to provisional 70820 PROVISIONAL