Acin1 (apoptotic chromatin condensation inducer 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Acin1 (apoptotic chromatin condensation inducer 1) Rattus norvegicus
Analyze
Symbol: Acin1
Name: apoptotic chromatin condensation inducer 1
RGD ID: 1311945
Description: Predicted to enable nucleic acid binding activity. Predicted to be involved in several processes, including apoptotic chromosome condensation; negative regulation of mRNA splicing, via spliceosome; and positive regulation of monocyte differentiation. Predicted to be located in cytosol; nuclear lumen; and plasma membrane. Predicted to be part of ASAP complex. Orthologous to human ACIN1 (apoptotic chromatin condensation inducer 1); PARTICIPATES IN mRNA decay pathway; RNA transport pathway; spliceosome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: acinus; apoptotic chromatin condensation inducer in the nucleus; LOC305884
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21528,102,112 - 28,147,001 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,102,112 - 28,147,001 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1529,941,238 - 29,985,942 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01531,088,452 - 31,133,156 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01529,338,187 - 29,382,916 (-)NCBIRnor_WKY
Rnor_6.01533,288,369 - 33,333,256 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,288,374 - 33,333,417 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01537,173,164 - 37,218,052 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41532,719,863 - 32,764,748 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11532,735,564 - 32,780,562 (-)NCBI
Celera1527,680,316 - 27,725,172 (-)NCBICelera
Cytogenetic Map15p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetylsalicylic acid  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
beauvericin  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
cocaine  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diclofenac  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
flutamide  (EXP)
fulvestrant  (ISO)
gentamycin  (EXP)
hexadecanoic acid  (ISO)
hydralazine  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
methamphetamine  (ISO)
methoxychlor  (ISO)
mono(2-ethyl-5-oxohexyl) phthalate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
Panduratin A  (ISO)
paracetamol  (ISO)
PCB138  (EXP)
phenobarbital  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
resveratrol  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP)
selenium atom  (ISO)
silicon dioxide  (ISO)
Soman  (EXP)
temozolomide  (ISO)
tetraphene  (ISO)
thioacetamide  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10490026   PMID:10716735   PMID:11208865   PMID:12393560   PMID:12477932   PMID:12665594   PMID:12947022   PMID:16314458   PMID:16767516   PMID:20966198   PMID:22658674  
PMID:22681889   PMID:25931508  


Genomics

Comparative Map Data
Acin1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21528,102,112 - 28,147,001 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,102,112 - 28,147,001 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1529,941,238 - 29,985,942 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01531,088,452 - 31,133,156 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01529,338,187 - 29,382,916 (-)NCBIRnor_WKY
Rnor_6.01533,288,369 - 33,333,256 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,288,374 - 33,333,417 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01537,173,164 - 37,218,052 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41532,719,863 - 32,764,748 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11532,735,564 - 32,780,562 (-)NCBI
Celera1527,680,316 - 27,725,172 (-)NCBICelera
Cytogenetic Map15p13NCBI
ACIN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381423,058,564 - 23,095,614 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1423,058,564 - 23,095,614 (-)EnsemblGRCh38hg38GRCh38
GRCh371423,527,773 - 23,564,823 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,597,616 - 22,634,663 (-)NCBINCBI36Build 36hg18NCBI36
Build 341422,597,615 - 22,634,663NCBI
Celera143,390,463 - 3,427,528 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,644,728 - 3,681,739 (-)NCBIHuRef
CHM1_11423,526,403 - 23,563,452 (-)NCBICHM1_1
T2T-CHM13v2.01417,259,183 - 17,296,258 (-)NCBIT2T-CHM13v2.0
Acin1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,879,618 - 54,924,422 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,879,618 - 54,924,388 (-)EnsemblGRCm39 Ensembl
GRCm381454,642,161 - 54,686,965 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,642,161 - 54,686,931 (-)EnsemblGRCm38mm10GRCm38
MGSCv371455,260,998 - 55,305,768 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361453,596,372 - 53,641,136 (-)NCBIMGSCv36mm8
Celera1452,430,550 - 52,475,165 (-)NCBICelera
Cytogenetic Map14C2NCBI
Acin1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540937,206,675 - 37,246,922 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540937,206,675 - 37,246,851 (+)NCBIChiLan1.0ChiLan1.0
ACIN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11421,975,370 - 22,012,092 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1421,975,370 - 22,012,092 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0143,878,426 - 3,915,802 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ACIN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.183,370,469 - 3,405,710 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl83,371,004 - 3,405,682 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha83,319,100 - 3,354,110 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.083,478,273 - 3,513,264 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,478,276 - 3,513,249 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,169,678 - 3,204,860 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,230,907 - 3,265,874 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,492,983 - 3,527,963 (-)NCBIUU_Cfam_GSD_1.0
Acin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,124,361 - 35,161,155 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367221,227,198 - 1,264,855 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049367221,252,083 - 1,264,018 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACIN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl775,951,203 - 75,989,231 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1775,951,203 - 75,989,234 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2781,287,021 - 81,325,200 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACIN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12923,427,866 - 23,464,717 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2923,427,573 - 23,464,394 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605922,952,471 - 22,989,345 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acin1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248209,444,467 - 9,483,975 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248209,444,435 - 9,483,867 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Acin1
137 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:210
Count of miRNA genes:144
Interacting mature miRNAs:167
Transcripts:ENSRNOT00000018982
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151448116528469888Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat

Markers in Region
AI073030  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,102,205 - 28,102,399 (+)MAPPERmRatBN7.2
Rnor_6.01533,288,463 - 33,288,656NCBIRnor6.0
Rnor_5.01537,173,258 - 37,173,451UniSTSRnor5.0
RGSC_v3.41532,719,954 - 32,720,147UniSTSRGSC3.4
Celera1527,680,407 - 27,680,600UniSTS
Cytogenetic Map15p13UniSTS
RH138440  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,123,317 - 28,123,486 (+)MAPPERmRatBN7.2
Rnor_6.01533,309,574 - 33,309,742NCBIRnor6.0
Rnor_5.01537,194,370 - 37,194,538UniSTSRnor5.0
RGSC_v3.41532,741,066 - 32,741,234UniSTSRGSC3.4
Celera1527,701,518 - 27,701,686UniSTS
RH 3.4 Map13640.4UniSTS
Cytogenetic Map15p13UniSTS
RH141273  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,123,317 - 28,123,498 (+)MAPPERmRatBN7.2
Rnor_6.01533,309,574 - 33,309,754NCBIRnor6.0
Rnor_5.01537,194,370 - 37,194,550UniSTSRnor5.0
RGSC_v3.41532,741,066 - 32,741,246UniSTSRGSC3.4
Celera1527,701,518 - 27,701,698UniSTS
Cytogenetic Map15p13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001170468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA925536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC109100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI575776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC091320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA512047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB744719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF110347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EV770592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM029308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM031419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM033220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000018982   ⟹   ENSRNOP00000018982
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1528,102,117 - 28,147,001 (-)Ensembl
Rnor_6.0 Ensembl1533,288,374 - 33,333,417 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109889   ⟹   ENSRNOP00000076634
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1528,102,117 - 28,147,001 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111598   ⟹   ENSRNOP00000090495
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1528,102,112 - 28,114,206 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112466   ⟹   ENSRNOP00000096887
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1528,102,117 - 28,147,001 (-)Ensembl
RefSeq Acc Id: NM_001170468   ⟹   NP_001163939
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21528,102,115 - 28,147,001 (-)NCBI
Rnor_6.01533,288,372 - 33,333,256 (-)NCBI
Rnor_5.01537,173,164 - 37,218,052 (-)NCBI
RGSC_v3.41532,719,863 - 32,764,748 (-)RGD
Celera1527,680,316 - 27,725,172 (-)RGD
Sequence:
RefSeq Acc Id: XM_006251958   ⟹   XP_006252020
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21528,102,115 - 28,146,997 (-)NCBI
Rnor_6.01533,288,372 - 33,333,250 (-)NCBI
Rnor_5.01537,173,164 - 37,218,052 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251959   ⟹   XP_006252021
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21528,102,115 - 28,146,997 (-)NCBI
Rnor_6.01533,288,372 - 33,333,250 (-)NCBI
Rnor_5.01537,173,164 - 37,218,052 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251960   ⟹   XP_006252022
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21528,102,115 - 28,146,997 (-)NCBI
Rnor_6.01533,288,372 - 33,333,250 (-)NCBI
Rnor_5.01537,173,164 - 37,218,052 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251962   ⟹   XP_006252024
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21528,102,112 - 28,146,280 (-)NCBI
Rnor_6.01533,288,369 - 33,332,901 (-)NCBI
Rnor_5.01537,173,164 - 37,218,052 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251963   ⟹   XP_006252025
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21528,102,112 - 28,114,044 (-)NCBI
Rnor_6.01533,288,369 - 33,300,415 (-)NCBI
Rnor_5.01537,173,164 - 37,218,052 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599684   ⟹   XP_017455173
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21528,102,115 - 28,146,997 (-)NCBI
Rnor_6.01533,288,372 - 33,333,250 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093288   ⟹   XP_038949216
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21528,102,115 - 28,146,997 (-)NCBI
RefSeq Acc Id: XM_039093289   ⟹   XP_038949217
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21528,111,114 - 28,146,997 (-)NCBI
RefSeq Acc Id: XR_005493719
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21528,106,986 - 28,146,997 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001163939   ⟸   NM_001170468
- UniProtKB: E9PST5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252024   ⟸   XM_006251962
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006252025   ⟸   XM_006251963
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006252022   ⟸   XM_006251960
- Peptide Label: isoform X4
- UniProtKB: A0A8I5Y5F2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252021   ⟸   XM_006251959
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006252020   ⟸   XM_006251958
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017455173   ⟸   XM_017599684
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000018982   ⟸   ENSRNOT00000018982
RefSeq Acc Id: XP_038949216   ⟸   XM_039093288
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038949217   ⟸   XM_039093289
- Peptide Label: isoform X7
RefSeq Acc Id: ENSRNOP00000076634   ⟸   ENSRNOT00000109889
RefSeq Acc Id: ENSRNOP00000090495   ⟸   ENSRNOT00000111598
RefSeq Acc Id: ENSRNOP00000096887   ⟸   ENSRNOT00000112466
Protein Domains
SAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PST5-F1-model_v2 AlphaFold E9PST5 1-1339 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311945 AgrOrtholog
BioCyc Gene G2FUF-13786 BioCyc
Ensembl Genes ENSRNOG00000013533 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000018982 ENTREZGENE
  ENSRNOP00000018982.4 UniProtKB/TrEMBL
  ENSRNOP00000076634 ENTREZGENE
  ENSRNOP00000076634.1 UniProtKB/TrEMBL
  ENSRNOP00000090495 ENTREZGENE
  ENSRNOP00000090495.1 UniProtKB/TrEMBL
  ENSRNOP00000096887 ENTREZGENE
  ENSRNOP00000096887.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018982 ENTREZGENE
  ENSRNOT00000018982.7 UniProtKB/TrEMBL
  ENSRNOT00000109889 ENTREZGENE
  ENSRNOT00000109889.1 UniProtKB/TrEMBL
  ENSRNOT00000111598 ENTREZGENE
  ENSRNOT00000111598.1 UniProtKB/TrEMBL
  ENSRNOT00000112466 ENTREZGENE
  ENSRNOT00000112466.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.720.30 UniProtKB/TrEMBL
  3.30.70.330 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7313280 IMAGE-MGC_LOAD
InterPro Acinus_RRM UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RSB_motif UniProtKB/TrEMBL
  SAP_dom UniProtKB/TrEMBL
  SAP_dom_sf UniProtKB/TrEMBL
KEGG Report rno:305884 UniProtKB/TrEMBL
MGC_CLONE MGC:109300 IMAGE-MGC_LOAD
NCBI Gene 305884 ENTREZGENE
Pfam RSB_motif UniProtKB/TrEMBL
  SAP UniProtKB/TrEMBL
PhenoGen Acin1 PhenoGen
PROSITE SAP UniProtKB/TrEMBL
SMART SAP UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
  SSF68906 UniProtKB/TrEMBL
UniProt A0A8I5Y5F2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AA64_RAT UniProtKB/TrEMBL
  A0A8I6AU50_RAT UniProtKB/TrEMBL
  E9PST5 ENTREZGENE, UniProtKB/TrEMBL
  Q5BJU9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Acin1  apoptotic chromatin condensation inducer 1  Acin1_predicted  apoptotic chromatin condensation inducer 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Acin1_predicted  apoptotic chromatin condensation inducer 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED