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Gene: Aqr (aquarius intron-binding spliceosomal factor) Rattus norvegicus
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Symbol: Aqr
Name: aquarius intron-binding spliceosomal factor
Description: Predicted to have mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to localize to the U2-type catalytic step 2 spliceosome and nucleoplasm. Orthologous to human AQR (aquarius intron-binding spliceosomal factor); PARTICIPATES IN spliceosome pathway; INTERACTS WITH bisphenol A; decabromodiphenyl ether; gentamycin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: aquarius; aquarius homolog; aquarius homolog (mouse); intron-binding protein aquarius; LOC366163
Orthologs:
Homo sapiens (human) : AQR (aquarius intron-binding spliceosomal factor)  HGNC  Alliance
Mus musculus (house mouse) : Aqr (aquarius)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Aqr (aquarius intron-binding spliceosomal factor)
Pan paniscus (bonobo/pygmy chimpanzee) : AQR (aquarius intron-binding spliceosomal factor)
Canis lupus familiaris (dog) : AQR (aquarius intron-binding spliceosomal factor)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Aqr (aquarius intron-binding spliceosomal factor)
Sus scrofa (pig) : AQR (aquarius intron-binding spliceosomal factor)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03105,570,399 - 105,640,431 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3105,570,292 - 105,640,463 (-)Ensembl
Rnor_5.03112,143,849 - 112,213,881 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4399,964,018 - 100,034,050 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1399,860,707 - 99,953,472 (-)NCBI
Celera399,844,517 - 99,914,644 (-)NCBICelera
Cytogenetic Map3q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Aqr
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1306223
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.