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Gene: Aqr (aquarius intron-binding spliceosomal factor) Rattus norvegicus
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Symbol: Aqr
Name: aquarius intron-binding spliceosomal factor
Description: Predicted to have mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to localize to the U2-type catalytic step 2 spliceosome and nucleoplasm. Orthologous to human AQR (aquarius intron-binding spliceosomal factor); PARTICIPATES IN spliceosome pathway; INTERACTS WITH bisphenol A; decabromodiphenyl ether; gentamycin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: aquarius; aquarius homolog; aquarius homolog (mouse); intron-binding protein aquarius; LOC366163
Orthologs:
Homo sapiens (human) : AQR (aquarius intron-binding spliceosomal factor)  HGNC  Alliance
Mus musculus (house mouse) : Aqr (aquarius)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Aqr (aquarius intron-binding spliceosomal factor)
Pan paniscus (bonobo/pygmy chimpanzee) : AQR (aquarius intron-binding spliceosomal factor)
Canis lupus familiaris (dog) : AQR (aquarius intron-binding spliceosomal factor)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Aqr (aquarius intron-binding spliceosomal factor)
Sus scrofa (pig) : AQR (aquarius intron-binding spliceosomal factor)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03105,570,399 - 105,640,431 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3105,570,292 - 105,640,463 (-)Ensembl
Rnor_5.03112,143,849 - 112,213,881 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4399,964,018 - 100,034,050 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1399,860,707 - 99,953,472 (-)NCBI
Celera399,844,517 - 99,914,644 (-)NCBICelera
Cytogenetic Map3q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
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Genomics

Comparative Map Data
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QTLs in Region (Rnor_6.0)
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Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
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Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
  
More on Aqr
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1306223
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.