Supt3h (SPT3 homolog, SAGA and STAGA complex component) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Supt3h (SPT3 homolog, SAGA and STAGA complex component) Rattus norvegicus
Analyze
Symbol: Supt3h
Name: SPT3 homolog, SAGA and STAGA complex component
RGD ID: 1591316
Description: Predicted to enable transcription coactivator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be part of SAGA complex and transcription factor TFTC complex. Orthologous to human SUPT3H (SPT3 homolog, SAGA and STAGA complex component); PARTICIPATES IN RNA polymerase II transcription initiation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; clozapine; haloperidol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC685697; similar to suppressor of Ty 3 homolog; suppressor of Ty 3 homolog; suppressor of Ty 3 homolog (S. cerevisiae); transcription initiation protein SPT3 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8923,375,889 - 23,704,229 (-)NCBIGRCr8
mRatBN7.2915,878,296 - 16,206,768 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl915,868,287 - 16,206,706 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0918,249,565 - 18,604,814 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl918,319,246 - 18,371,856 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0917,146,969 - 17,490,131 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4911,492,552 - 11,831,246 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera913,605,383 - 13,944,093 (-)NCBICelera
Cytogenetic Map9q12-q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
5. ATAC-king the complexity of SAGA during evolution. Spedale G, etal., Genes Dev. 2012 Mar 15;26(6):527-41. doi: 10.1101/gad.184705.111.
Additional References at PubMed
PMID:9726987   PMID:10373431   PMID:11564863   PMID:18206972  


Genomics

Comparative Map Data
Supt3h
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8923,375,889 - 23,704,229 (-)NCBIGRCr8
mRatBN7.2915,878,296 - 16,206,768 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl915,868,287 - 16,206,706 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0918,249,565 - 18,604,814 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl918,319,246 - 18,371,856 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0917,146,969 - 17,490,131 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4911,492,552 - 11,831,246 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera913,605,383 - 13,944,093 (-)NCBICelera
Cytogenetic Map9q12-q13NCBI
SUPT3H
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38644,809,057 - 45,377,934 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl644,809,317 - 45,377,953 (-)EnsemblGRCh38hg38GRCh38
GRCh37644,776,794 - 45,345,671 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36644,904,447 - 45,453,648 (-)NCBINCBI36Build 36hg18NCBI36
Build 34644,904,446 - 45,453,648NCBI
Celera646,349,249 - 46,898,679 (-)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef644,516,692 - 45,068,472 (-)NCBIHuRef
CHM1_1644,797,285 - 45,348,380 (-)NCBICHM1_1
T2T-CHM13v2.0644,643,948 - 45,212,744 (-)NCBIT2T-CHM13v2.0
Supt3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391745,088,005 - 45,430,181 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1745,088,039 - 45,430,177 (+)EnsemblGRCm39 Ensembl
GRCm381744,777,118 - 45,119,294 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1744,777,152 - 45,119,290 (+)EnsemblGRCm38mm10GRCm38
MGSCv371744,914,120 - 45,256,233 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361744,240,226 - 44,582,865 (+)NCBIMGSCv36mm8
Celera1748,214,105 - 48,550,772 (+)NCBICelera
Cytogenetic Map17B3NCBI
cM Map1721.56NCBI
Supt3h
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543710,258,783 - 10,649,590 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543710,207,802 - 10,649,559 (-)NCBIChiLan1.0ChiLan1.0
SUPT3H
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2559,319,591 - 59,916,681 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1655,185,516 - 55,738,622 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0644,406,978 - 44,960,039 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1645,687,038 - 46,239,155 (-)NCBIpanpan1.1PanPan1.1panPan2
SUPT3H
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11213,083,084 - 13,684,090 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1213,154,955 - 13,670,397 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1213,183,675 - 13,713,531 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01213,642,019 - 14,172,912 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1213,643,074 - 14,159,135 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11213,167,898 - 13,697,782 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01213,255,765 - 13,785,672 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01213,351,215 - 13,881,345 (-)NCBIUU_Cfam_GSD_1.0
Supt3h
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494648,624,054 - 49,102,775 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647614,866,970 - 15,334,893 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647614,857,428 - 15,336,145 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUPT3H
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl739,751,927 - 40,161,103 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1739,763,303 - 40,161,123 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2745,741,350 - 45,870,515 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SUPT3H
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11726,849,199 - 27,417,306 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604444,861,014 - 45,381,986 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Supt3h
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475414,823,331 - 15,236,032 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Supt3h
1300 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:127
Count of miRNA genes:112
Interacting mature miRNAs:115
Transcripts:ENSRNOT00000027293
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat

Markers in Region
D9Rat38  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2915,906,164 - 15,906,328 (+)MAPPERmRatBN7.2
Rnor_6.0918,287,725 - 18,287,888NCBIRnor6.0
Rnor_5.0917,174,111 - 17,174,274UniSTSRnor5.0
RGSC_v3.4911,519,981 - 11,520,147RGDRGSC3.4
RGSC_v3.4911,519,982 - 11,520,147UniSTSRGSC3.4
RGSC_v3.1911,517,304 - 11,517,469RGD
Celera913,643,584 - 13,643,747UniSTS
RH 3.4 Map986.5UniSTS
RH 3.4 Map986.5RGD
RH 2.0 Map980.3RGD
SHRSP x BN Map912.9099RGD
FHH x ACI Map911.19RGD
Cytogenetic Map9q12UniSTS
D9Rat37  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2915,887,779 - 15,887,950 (+)MAPPERmRatBN7.2
Rnor_6.0918,269,340 - 18,269,510NCBIRnor6.0
Rnor_5.0917,155,726 - 17,155,896UniSTSRnor5.0
RGSC_v3.4911,501,597 - 11,501,767UniSTSRGSC3.4
RGSC_v3.4911,501,596 - 11,501,767RGDRGSC3.4
RGSC_v3.1911,498,919 - 11,499,089RGD
Celera913,625,199 - 13,625,369UniSTS
RH 3.4 Map991.4RGD
RH 3.4 Map991.4UniSTS
RH 2.0 Map985.8RGD
SHRSP x BN Map914.0098RGD
Cytogenetic Map9q12UniSTS
RH127424  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2915,878,715 - 15,878,926 (+)MAPPERmRatBN7.2
Rnor_6.0918,260,297 - 18,260,507NCBIRnor6.0
Rnor_5.0917,146,999 - 17,147,209UniSTSRnor5.0
RGSC_v3.4911,492,229 - 11,492,439UniSTSRGSC3.4
Celera913,616,115 - 13,616,325UniSTS
RH 3.4 Map985.0UniSTS
Cytogenetic Map9q12UniSTS
Runx2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2916,167,726 - 16,168,035 (+)MAPPERmRatBN7.2
Rnor_6.0918,565,038 - 18,565,346NCBIRnor6.0
Rnor_5.0917,451,099 - 17,451,407UniSTSRnor5.0
RGSC_v3.4911,792,215 - 11,792,523UniSTSRGSC3.4
Celera913,904,332 - 13,904,640UniSTS
Cytogenetic Map9q12UniSTS
BE105373  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2915,969,806 - 15,969,961 (+)MAPPERmRatBN7.2
Rnor_6.0918,350,632 - 18,350,786NCBIRnor6.0
Rnor_5.0917,236,912 - 17,237,066UniSTSRnor5.0
RGSC_v3.4911,583,936 - 11,584,090UniSTSRGSC3.4
Celera913,707,064 - 13,707,218UniSTS
RH 3.4 Map986.4UniSTS
Cytogenetic Map9q12UniSTS
RH136695  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map991.5UniSTS
Cytogenetic Map9q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 26 11 6 1 6 69 33 38
Low 1 17 46 35 18 35 8 11 5 2 3 11 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008757969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000027293   ⟹   ENSRNOP00000027293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl915,879,405 - 16,206,430 (-)Ensembl
Rnor_6.0 Ensembl918,319,246 - 18,371,856 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097089   ⟹   ENSRNOP00000076482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl915,868,287 - 16,195,053 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111359   ⟹   ENSRNOP00000094629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl915,878,693 - 16,206,706 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114932   ⟹   ENSRNOP00000088356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl915,878,722 - 16,195,053 (-)Ensembl
RefSeq Acc Id: NM_001427435   ⟹   NP_001414364
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8923,376,136 - 23,704,163 (-)NCBI
RefSeq Acc Id: XM_008766906   ⟹   XP_008765128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8923,375,889 - 23,704,229 (-)NCBI
mRatBN7.2915,878,296 - 16,206,759 (-)NCBI
Rnor_6.0918,259,877 - 18,604,808 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039084827   ⟹   XP_038940755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8923,375,889 - 23,704,189 (-)NCBI
mRatBN7.2915,878,296 - 16,206,759 (-)NCBI
RefSeq Acc Id: XM_039084829   ⟹   XP_038940757
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8923,375,889 - 23,704,163 (-)NCBI
mRatBN7.2915,878,296 - 16,206,681 (-)NCBI
RefSeq Acc Id: XM_039084830   ⟹   XP_038940758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8923,375,889 - 23,703,897 (-)NCBI
mRatBN7.2915,878,296 - 16,206,439 (-)NCBI
RefSeq Acc Id: XM_039084831   ⟹   XP_038940759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8923,375,889 - 23,703,667 (-)NCBI
mRatBN7.2915,878,296 - 16,206,226 (-)NCBI
RefSeq Acc Id: XM_039084834   ⟹   XP_038940762
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8923,375,889 - 23,547,961 (-)NCBI
mRatBN7.2915,878,296 - 15,992,582 (-)NCBI
RefSeq Acc Id: XM_039084838   ⟹   XP_038940766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8923,375,889 - 23,451,102 (-)NCBI
mRatBN7.2915,878,296 - 15,953,573 (-)NCBI
RefSeq Acc Id: XM_063267742   ⟹   XP_063123812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8923,375,889 - 23,704,128 (-)NCBI
RefSeq Acc Id: XM_063267743   ⟹   XP_063123813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8923,375,889 - 23,703,897 (-)NCBI
RefSeq Acc Id: XM_063267744   ⟹   XP_063123814
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8923,406,794 - 23,704,129 (-)NCBI
RefSeq Acc Id: XM_063267745   ⟹   XP_063123815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8923,375,889 - 23,704,180 (-)NCBI
RefSeq Acc Id: XM_063267746   ⟹   XP_063123816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8923,376,136 - 23,692,401 (-)NCBI
RefSeq Acc Id: XM_063267747   ⟹   XP_063123817
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8923,406,794 - 23,692,401 (-)NCBI
RefSeq Acc Id: XM_063267748   ⟹   XP_063123818
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8923,375,889 - 23,704,133 (-)NCBI
RefSeq Acc Id: XM_063267749   ⟹   XP_063123819
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8923,375,889 - 23,704,129 (-)NCBI
RefSeq Acc Id: XM_063267750   ⟹   XP_063123820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8923,375,889 - 23,704,192 (-)NCBI
RefSeq Acc Id: XM_063267751   ⟹   XP_063123821
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8923,375,889 - 23,692,401 (-)NCBI
RefSeq Acc Id: XM_063267752   ⟹   XP_063123822
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8923,375,889 - 23,451,020 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008765128   ⟸   XM_008766906
- Peptide Label: isoform X1
- UniProtKB: A0A8I5YBB9 (UniProtKB/TrEMBL),   F1LY08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000027293   ⟸   ENSRNOT00000027293
RefSeq Acc Id: XP_038940755   ⟸   XM_039084827
- Peptide Label: isoform X2
- UniProtKB: A6JJ08 (UniProtKB/TrEMBL),   F1LY08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940757   ⟸   XM_039084829
- Peptide Label: isoform X1
- UniProtKB: A0A8I5YBB9 (UniProtKB/TrEMBL),   F1LY08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940758   ⟸   XM_039084830
- Peptide Label: isoform X1
- UniProtKB: A0A8I5YBB9 (UniProtKB/TrEMBL),   F1LY08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940759   ⟸   XM_039084831
- Peptide Label: isoform X1
- UniProtKB: A0A8I5YBB9 (UniProtKB/TrEMBL),   F1LY08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940762   ⟸   XM_039084834
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038940766   ⟸   XM_039084838
- Peptide Label: isoform X11
RefSeq Acc Id: ENSRNOP00000076482   ⟸   ENSRNOT00000097089
RefSeq Acc Id: ENSRNOP00000094629   ⟸   ENSRNOT00000111359
RefSeq Acc Id: ENSRNOP00000088356   ⟸   ENSRNOT00000114932
RefSeq Acc Id: XP_063123820   ⟸   XM_063267750
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063123815   ⟸   XM_063267745
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063123818   ⟸   XM_063267748
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063123819   ⟸   XM_063267749
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063123812   ⟸   XM_063267742
- Peptide Label: isoform X2
- UniProtKB: A6JJ08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123813   ⟸   XM_063267743
- Peptide Label: isoform X2
- UniProtKB: A6JJ08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123821   ⟸   XM_063267751
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063123822   ⟸   XM_063267752
- Peptide Label: isoform X12
RefSeq Acc Id: NP_001414364   ⟸   NM_001427435
- UniProtKB: A0A8I6A991 (UniProtKB/TrEMBL),   A6JJ07 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123816   ⟸   XM_063267746
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AS14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123814   ⟸   XM_063267744
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063123817   ⟸   XM_063267747
- Peptide Label: isoform X7

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LY08-F1-model_v2 AlphaFold F1LY08 1-299 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1591316 AgrOrtholog
BioCyc Gene G2FUF-28150 BioCyc
Ensembl Genes ENSRNOG00000020153 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027293.8 UniProtKB/TrEMBL
  ENSRNOT00000097089.1 UniProtKB/TrEMBL
  ENSRNOT00000111359.1 UniProtKB/TrEMBL
  ENSRNOT00000114932.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  TFIID_TAF13 UniProtKB/TrEMBL
NCBI Gene 685697 ENTREZGENE
PANTHER PTHR11380 UniProtKB/TrEMBL
  TRANSCRIPTION INITIATION PROTEIN SPT3 HOMOLOG UniProtKB/TrEMBL
Pfam TFIID-18kDa UniProtKB/TrEMBL
PhenoGen Supt3h PhenoGen
RatGTEx ENSRNOG00000020153 RatGTEx
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt A0A8I5YBB9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A991 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AS14 ENTREZGENE, UniProtKB/TrEMBL
  A6JJ07 ENTREZGENE, UniProtKB/TrEMBL
  A6JJ08 ENTREZGENE, UniProtKB/TrEMBL
  F1LY08 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-10-01 Supt3h  SPT3 homolog, SAGA and STAGA complex component  Supt3h  suppressor of Ty 3 homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Supt3h  suppressor of Ty 3 homolog (S. cerevisiae)  LOC685697  similar to suppressor of Ty 3 homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC685697  similar to suppressor of Ty 3 homolog  LOC683926  similar to suppressor of Ty 3 homolog  Data merged from RGD:1596567 1643240 APPROVED
2006-11-20 LOC685697  similar to suppressor of Ty 3 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC683926  similar to suppressor of Ty 3 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL