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Imported Disease Annotations - CTD |
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Imported Disease Annotations - CTD |
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# | Reference Title | Reference Citation |
1. | Binding of c-Myc to chromatin mediates mitogen-induced acetylation of histone H4 and gene activation. | Frank SR, etal., Genes Dev. 2001 Aug 15;15(16):2069-82. |
2. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
3. | GOA pipeline | RGD automated data pipeline |
4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
6. | Comprehensive gene review and curation | RGD comprehensive gene curation |
7. | ATAC-king the complexity of SAGA during evolution. | Spedale G, etal., Genes Dev. 2012 Mar 15;26(6):527-41. doi: 10.1101/gad.184705.111. |
8. | The INO80 family of chromatin-remodeling enzymes: regulators of histone variant dynamics. | Watanabe S and Peterson CL, Cold Spring Harb Symp Quant Biol. 2010;75:35-42. doi: 10.1101/sqb.2010.75.063. Epub 2011 Apr 18. |
PMID:9708738 | PMID:10373431 | PMID:10966108 | PMID:11418595 | PMID:11544477 | PMID:11564863 | PMID:12464179 | PMID:14966270 | PMID:18206972 | PMID:24463511 |
Trrap (Rattus norvegicus - Norway rat) |
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TRRAP (Homo sapiens - human) |
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Trrap (Mus musculus - house mouse) |
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Trrap (Chinchilla lanigera - long-tailed chinchilla) |
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TRRAP (Pan paniscus - bonobo/pygmy chimpanzee) |
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TRRAP (Canis lupus familiaris - dog) |
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Trrap (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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TRRAP (Sus scrofa - pig) |
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TRRAP (Chlorocebus sabaeus - green monkey) |
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Trrap (Heterocephalus glaber - naked mole-rat) |
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Variants in Trrap
500 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
BI286241 |
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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nervous system
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renal system
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reproductive system
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respiratory system
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9 | 11 | 49 | 113 | 91 | 90 | 59 | 25 | 59 | 6 | 218 | 97 | 93 | 45 | 60 | 31 |
RefSeq Transcripts | NM_001105907 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_039089159 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039089162 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039089168 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039089172 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039089173 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039089174 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063271119 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063271121 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063271122 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063271123 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063271124 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063271125 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063271126 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063271127 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063271128 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063271130 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063271131 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063271132 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063271133 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063271134 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | CH474012 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
FQ224992 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ231783 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000012 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000030545 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000076323 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000091346 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001105907 ⟹ NP_001099377 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039089159 ⟹ XP_038945087 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039089162 ⟹ XP_038945090 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039089168 ⟹ XP_038945096 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039089172 ⟹ XP_038945100 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039089173 ⟹ XP_038945101 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039089174 ⟹ XP_038945102 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063271119 ⟹ XP_063127189 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063271121 ⟹ XP_063127191 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063271122 ⟹ XP_063127192 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063271123 ⟹ XP_063127193 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063271124 ⟹ XP_063127194 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063271125 ⟹ XP_063127195 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063271126 ⟹ XP_063127196 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063271127 ⟹ XP_063127197 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063271128 ⟹ XP_063127198 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063271130 ⟹ XP_063127200 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063271131 ⟹ XP_063127201 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063271132 ⟹ XP_063127202 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063271133 ⟹ XP_063127203 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063271134 ⟹ XP_063127204 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001099377 | (Get FASTA) | NCBI Sequence Viewer |
XP_038945087 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038945090 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038945096 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038945100 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038945101 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038945102 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127189 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127191 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127192 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127193 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127194 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127195 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127196 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127197 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127198 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127200 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127201 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127202 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127203 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063127204 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDL89625 | (Get FASTA) | NCBI Sequence Viewer |
EDL89626 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000076944 | ||
ENSRNOP00000076944.1 | |||
ENSRNOP00000095357 | |||
ENSRNOP00000095357.1 | |||
ENSRNOP00000095828 | |||
ENSRNOP00000095828.1 | |||
ENSRNOP00000111242 |
RefSeq Acc Id: | NP_001099377 ⟸ NM_001105907 |
- UniProtKB: | A0A8I6GLC1 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_038945102 ⟸ XM_039089174 |
- Peptide Label: | isoform X19 |
- UniProtKB: | A0A8I6GLC1 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038945101 ⟸ XM_039089173 |
- Peptide Label: | isoform X18 |
- UniProtKB: | A0A8I5Y6J8 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038945090 ⟸ XM_039089162 |
- Peptide Label: | isoform X5 |
- UniProtKB: | A0A8I6GLC1 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038945096 ⟸ XM_039089168 |
- Peptide Label: | isoform X12 |
- UniProtKB: | A0A8I5Y6J8 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038945087 ⟸ XM_039089159 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A8I6GLC1 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038945100 ⟸ XM_039089172 |
- Peptide Label: | isoform X17 |
- UniProtKB: | A0A8I6GLC1 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063127193 ⟸ XM_063271123 |
- Peptide Label: | isoform X4 |
- UniProtKB: | A0A8I6GLC1 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063127202 ⟸ XM_063271132 |
- Peptide Label: | isoform X14 |
- UniProtKB: | A0A8I6GLC1 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063127198 ⟸ XM_063271128 |
- Peptide Label: | isoform X10 |
- UniProtKB: | A0A8I6GLC1 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063127195 ⟸ XM_063271125 |
- Peptide Label: | isoform X7 |
- UniProtKB: | A0A8I6GLC1 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063127194 ⟸ XM_063271124 |
- Peptide Label: | isoform X6 |
- UniProtKB: | A0A8I6GLC1 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063127204 ⟸ XM_063271134 |
- Peptide Label: | isoform X16 |
- UniProtKB: | A0A8I5Y6J8 (UniProtKB/TrEMBL), A0A8I6AL99 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063127197 ⟸ XM_063271127 |
- Peptide Label: | isoform X9 |
- UniProtKB: | A0A8I6GLC1 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063127203 ⟸ XM_063271133 |
- Peptide Label: | isoform X15 |
- UniProtKB: | A0A8I5Y6J8 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063127196 ⟸ XM_063271126 |
- Peptide Label: | isoform X8 |
- UniProtKB: | A0A8I6GLC1 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063127201 ⟸ XM_063271131 |
- Peptide Label: | isoform X13 |
- UniProtKB: | A0A8I5Y6J8 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063127192 ⟸ XM_063271122 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A0A8I6GLC1 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063127200 ⟸ XM_063271130 |
- Peptide Label: | isoform X11 |
- UniProtKB: | A0A8I5Y6J8 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063127189 ⟸ XM_063271119 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I6GLC1 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063127191 ⟸ XM_063271121 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I6GLC1 (UniProtKB/TrEMBL) |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1305446 | AgrOrtholog |
BioCyc Gene | G2FUF-20048 | BioCyc |
Ensembl Genes | ENSRNOG00000025244 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000030545 | ENTREZGENE |
ENSRNOT00000030545.8 | UniProtKB/TrEMBL | |
ENSRNOT00000076323 | ENTREZGENE | |
ENSRNOT00000076323.3 | UniProtKB/TrEMBL | |
ENSRNOT00000091346 | ENTREZGENE | |
ENSRNOT00000091346.2 | UniProtKB/TrEMBL | |
ENSRNOT00000166774 | ENTREZGENE | |
Gene3D-CATH | 1.25.10.10 | UniProtKB/TrEMBL |
InterPro | ARM-like | UniProtKB/TrEMBL |
ARM-type_fold | UniProtKB/TrEMBL | |
DDR_Repair_Kinase | UniProtKB/TrEMBL | |
FATC_dom | UniProtKB/TrEMBL | |
Kinase-like_dom_sf | UniProtKB/TrEMBL | |
PI3/4_kinase_cat_dom | UniProtKB/TrEMBL | |
PIK-rel_kinase_FAT | UniProtKB/TrEMBL | |
PIK_FAT | UniProtKB/TrEMBL | |
Tra1_central | UniProtKB/TrEMBL | |
Tra1_ring | UniProtKB/TrEMBL | |
NCBI Gene | 288471 | ENTREZGENE |
PANTHER | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED | UniProtKB/TrEMBL |
PTHR11139:SF1 | UniProtKB/TrEMBL | |
Pfam | FAT | UniProtKB/TrEMBL |
PI3_PI4_kinase | UniProtKB/TrEMBL | |
Tra1_central | UniProtKB/TrEMBL | |
Tra1_ring | UniProtKB/TrEMBL | |
PhenoGen | Trrap | PhenoGen |
PROSITE | FAT | UniProtKB/TrEMBL |
FATC | UniProtKB/TrEMBL | |
PI3_4_KINASE_3 | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000025244 | RatGTEx |
SMART | FATC | UniProtKB/TrEMBL |
PI3Kc | UniProtKB/TrEMBL | |
Superfamily-SCOP | SSF48371 | UniProtKB/TrEMBL |
SSF56112 | UniProtKB/TrEMBL | |
UniProt | A0A8I5Y6J8 | ENTREZGENE, UniProtKB/TrEMBL |
A0A8I6AL99 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I6GLC1 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2008-04-30 | Trrap | transformation/transcription domain-associated protein | Trrap_predicted | transformation/transcription domain-associated protein (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-12 | Trrap_predicted | transformation/transcription domain-associated protein (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |