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Gene: Lsm6 (LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated) Rattus norvegicus
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Symbol: Lsm6
Name: LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
Description: Predicted to have RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome and maturation of SSU-rRNA. Predicted to localize to the Lsm2-8 complex; P-body; and nucleus. Orthologous to human LSM6 (LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated); PARTICIPATES IN spliceosome pathway; RNA degradation pathway; INTERACTS WITH acrylamide; bisphenol A; buspirone.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC100361202; LOC498934; LSM6 homolog, U6 small nuclear RNA associated; LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae); LSM6 U6 small nuclear RNA and mRNA degradation associated; rCG63582-like; RGD1561937; similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F); Sm protein F; U6 snRNA-associated Sm-like protein LSm6
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01932,770,640 - 32,785,215 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01943,665,152 - 43,679,724 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41930,877,859 - 30,893,927 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1928,598,125 - 28,612,685 (+)NCBICelera
Cytogenetic Map19q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Lsm6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1561937
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.