Rpap2 (RNA polymerase II associated protein 2) - Rat Genome Database

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Gene: Rpap2 (RNA polymerase II associated protein 2) Rattus norvegicus
Analyze
Symbol: Rpap2
Name: RNA polymerase II associated protein 2
RGD ID: 1309034
Description: Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in dephosphorylation of RNA polymerase II C-terminal domain and snRNA transcription. Predicted to be located in cytosol and nucleolus. Predicted to be part of RNA polymerase II, holoenzyme. Predicted to be active in cytoplasm and nucleus. Orthologous to human RPAP2 (RNA polymerase II associated protein 2); PARTICIPATES IN RNA polymerase II transcription pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; glafenine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC305120; putative RNA polymerase II-associated protein 2; RGD1309034; RNA polymerase II subunit B1 CTD phosphatase Rpap2; RNA polymerase II-associated protein 2; similar to Expressed sequence AW060207
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2142,109,044 - 2,187,343 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl142,109,053 - 2,187,350 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx141,987,484 - 2,065,871 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0143,289,301 - 3,367,686 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0141,985,869 - 2,064,466 (-)NCBIRnor_WKY
Rnor_6.0143,125,595 - 3,204,590 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl143,124,622 - 3,204,588 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0143,126,061 - 3,205,485 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4142,664,860 - 2,744,461 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1142,664,860 - 2,744,461 (-)NCBI
Celera142,127,947 - 2,207,709 (-)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cellular_component  (ND)
cytoplasm  (IBA,ISO,ISS)
cytosol  (IEA,ISO)
nucleolus  (IEA,ISO)
nucleus  (IBA,IEA,ISO,ISS)
RNA polymerase II, holoenzyme  (ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Updating the RNA polymerase CTD code: adding gene-specific layers. Egloff S, etal., Trends Genet. 2012 Jul;28(7):333-41. doi: 10.1016/j.tig.2012.03.007. Epub 2012 May 21.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. The writers, readers, and functions of the RNA polymerase II C-terminal domain code. Jeronimo C, etal., Chem Rev. 2013 Nov 13;113(11):8491-522. doi: 10.1021/cr4001397. Epub 2013 Jul 10.
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:22137580   PMID:22231121  


Genomics

Comparative Map Data
Rpap2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2142,109,044 - 2,187,343 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl142,109,053 - 2,187,350 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx141,987,484 - 2,065,871 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0143,289,301 - 3,367,686 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0141,985,869 - 2,064,466 (-)NCBIRnor_WKY
Rnor_6.0143,125,595 - 3,204,590 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl143,124,622 - 3,204,588 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0143,126,061 - 3,205,485 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4142,664,860 - 2,744,461 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1142,664,860 - 2,744,461 (-)NCBI
Celera142,127,947 - 2,207,709 (-)NCBICelera
Cytogenetic Map14p22NCBI
RPAP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38192,299,059 - 92,402,056 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl192,299,059 - 92,402,056 (+)EnsemblGRCh38hg38GRCh38
GRCh37192,764,616 - 92,867,613 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36192,537,193 - 92,626,317 (+)NCBINCBI36Build 36hg18NCBI36
Celera191,010,952 - 91,106,077 (+)NCBICelera
Cytogenetic Map1p22.1NCBI
HuRef190,884,969 - 90,974,879 (+)NCBIHuRef
CHM1_1192,879,299 - 92,968,461 (+)NCBICHM1_1
T2T-CHM13v2.0192,143,968 - 92,246,943 (+)NCBIT2T-CHM13v2.0
Rpap2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395107,745,239 - 107,809,719 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5107,745,239 - 107,809,704 (+)EnsemblGRCm39 Ensembl
GRCm385107,597,373 - 107,661,853 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5107,597,373 - 107,661,838 (+)EnsemblGRCm38mm10GRCm38
MGSCv375108,026,399 - 108,090,857 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365107,838,037 - 107,902,138 (+)NCBIMGSCv36mm8
Celera5104,709,740 - 104,774,242 (+)NCBICelera
Cytogenetic Map5FNCBI
Rpap2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554232,101,780 - 2,195,390 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554232,062,163 - 2,195,351 (-)NCBIChiLan1.0ChiLan1.0
RPAP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1193,701,765 - 93,790,323 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl193,701,765 - 93,790,323 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0194,962,964 - 95,102,307 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RPAP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1656,564,310 - 56,644,382 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha659,264,179 - 59,343,537 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0656,941,722 - 57,021,916 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl656,873,999 - 57,021,872 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1656,621,561 - 56,701,635 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0656,600,482 - 56,680,323 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0657,060,629 - 57,140,708 (-)NCBIUU_Cfam_GSD_1.0
Rpap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058102,169,688 - 102,255,994 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365376,692,000 - 6,778,275 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPAP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4124,690,317 - 124,773,887 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14124,691,655 - 124,773,914 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24136,360,271 - 136,442,510 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPAP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12040,863,401 - 40,950,981 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2040,863,719 - 40,950,879 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603377,056,891 - 77,145,495 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpap2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247425,338,997 - 5,434,936 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
D14Rat97  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera142,169,969 - 2,170,174UniSTS
FHH x ACI Map141.41RGD
FHH x ACI Map141.41UniSTS
Cytogenetic Map14p22UniSTS
BE095638  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2142,109,102 - 2,109,272 (+)MAPPERmRatBN7.2
Rnor_6.0143,125,656 - 3,125,825NCBIRnor6.0
Rnor_5.0143,126,122 - 3,126,291UniSTSRnor5.0
RGSC_v3.4142,664,906 - 2,665,075UniSTSRGSC3.4
Celera142,127,993 - 2,128,162UniSTS
RH 3.4 Map1437.3UniSTS
Cytogenetic Map14p22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14121760611030812Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14121760616960180Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:210
Count of miRNA genes:85
Interacting mature miRNAs:92
Transcripts:ENSRNOT00000002815, ENSRNOT00000063778
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 4 30 14 19 14 4 4 74 29 39 11 4
Low 1 39 27 27 27 4 7 6 2 4
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000002815   ⟹   ENSRNOP00000002815
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl142,109,059 - 2,187,350 (-)Ensembl
Rnor_6.0 Ensembl143,124,622 - 3,204,588 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095290   ⟹   ENSRNOP00000084495
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl142,134,414 - 2,187,072 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095884   ⟹   ENSRNOP00000090972
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl142,109,053 - 2,187,322 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000102281   ⟹   ENSRNOP00000078517
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl142,109,059 - 2,187,246 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106624   ⟹   ENSRNOP00000080489
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl142,109,059 - 2,187,246 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111385   ⟹   ENSRNOP00000090942
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl142,109,063 - 2,187,318 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119617   ⟹   ENSRNOP00000081066
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl142,150,617 - 2,187,322 (-)Ensembl
RefSeq Acc Id: NM_001013987   ⟹   NP_001014009
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,109,057 - 2,187,246 (-)NCBI
Rnor_6.0143,125,610 - 3,204,492 (-)NCBI
Rnor_5.0143,126,061 - 3,205,485 (-)NCBI
RGSC_v3.4142,664,860 - 2,744,461 (-)RGD
Celera142,127,947 - 2,207,709 (-)RGD
Sequence:
RefSeq Acc Id: XM_006250547   ⟹   XP_006250609
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,109,053 - 2,187,042 (-)NCBI
Rnor_6.0143,125,595 - 3,204,375 (-)NCBI
Rnor_5.0143,126,061 - 3,205,485 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250548   ⟹   XP_006250610
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,109,053 - 2,187,343 (-)NCBI
Rnor_6.0143,125,595 - 3,204,590 (-)NCBI
Rnor_5.0143,126,061 - 3,205,485 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769928   ⟹   XP_008768150
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,109,407 - 2,187,343 (-)NCBI
Rnor_6.0143,126,517 - 3,204,590 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769929   ⟹   XP_008768151
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,109,044 - 2,187,343 (-)NCBI
Rnor_6.0143,125,595 - 3,204,590 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039091800   ⟹   XP_038947728
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,109,053 - 2,187,343 (-)NCBI
RefSeq Acc Id: XM_039091801   ⟹   XP_038947729
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,109,053 - 2,187,343 (-)NCBI
RefSeq Acc Id: XM_039091802   ⟹   XP_038947730
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,145,695 - 2,187,343 (-)NCBI
RefSeq Acc Id: XM_039091803   ⟹   XP_038947731
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,109,053 - 2,186,905 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001014009   ⟸   NM_001013987
- UniProtKB: D4A672 (UniProtKB/Swiss-Prot),   Q5I0E6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006250610   ⟸   XM_006250548
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006250609   ⟸   XM_006250547
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008768151   ⟸   XM_008769929
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008768150   ⟸   XM_008769928
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000002815   ⟸   ENSRNOT00000002815
RefSeq Acc Id: XP_038947729   ⟸   XM_039091801
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038947728   ⟸   XM_039091800
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038947731   ⟸   XM_039091803
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038947730   ⟸   XM_039091802
- Peptide Label: isoform X5
RefSeq Acc Id: ENSRNOP00000080489   ⟸   ENSRNOT00000106624
RefSeq Acc Id: ENSRNOP00000090972   ⟸   ENSRNOT00000095884
RefSeq Acc Id: ENSRNOP00000090942   ⟸   ENSRNOT00000111385
RefSeq Acc Id: ENSRNOP00000084495   ⟸   ENSRNOT00000095290
RefSeq Acc Id: ENSRNOP00000078517   ⟸   ENSRNOT00000102281
RefSeq Acc Id: ENSRNOP00000081066   ⟸   ENSRNOT00000119617
Protein Domains
RTR1-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5I0E6-F1-model_v2 AlphaFold Q5I0E6 1-609 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699157
Promoter ID:EPDNEW_R9682
Type:multiple initiation site
Name:Rpap2_1
Description:RNA polymerase II associated protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0143,204,573 - 3,204,633EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309034 AgrOrtholog
BioCyc Gene G2FUF-16626 BioCyc
Ensembl Genes ENSRNOG00000023484 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000002815 ENTREZGENE
  ENSRNOP00000002815.6 UniProtKB/TrEMBL
  ENSRNOP00000078517.1 UniProtKB/TrEMBL
  ENSRNOP00000080489 ENTREZGENE
  ENSRNOP00000080489.1 UniProtKB/TrEMBL
  ENSRNOP00000081066 ENTREZGENE
  ENSRNOP00000081066.1 UniProtKB/TrEMBL
  ENSRNOP00000084495 ENTREZGENE
  ENSRNOP00000084495.1 UniProtKB/TrEMBL
  ENSRNOP00000090942 ENTREZGENE
  ENSRNOP00000090942.1 UniProtKB/TrEMBL
  ENSRNOP00000090972 ENTREZGENE
  ENSRNOP00000090972.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002815 ENTREZGENE
  ENSRNOT00000002815.8 UniProtKB/TrEMBL
  ENSRNOT00000095290 ENTREZGENE
  ENSRNOT00000095290.1 UniProtKB/TrEMBL
  ENSRNOT00000095884 ENTREZGENE
  ENSRNOT00000095884.1 UniProtKB/TrEMBL
  ENSRNOT00000102281.1 UniProtKB/TrEMBL
  ENSRNOT00000106624 ENTREZGENE
  ENSRNOT00000106624.1 UniProtKB/TrEMBL
  ENSRNOT00000111385 ENTREZGENE
  ENSRNOT00000111385.1 UniProtKB/TrEMBL
  ENSRNOT00000119617 ENTREZGENE
  ENSRNOT00000119617.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.820 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7123983 IMAGE-MGC_LOAD
InterPro Rtr1/RPAP2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rtr1/RPAP2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rtr1/RPAP2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:305120 UniProtKB/Swiss-Prot
MGC_CLONE MGC:95054 IMAGE-MGC_LOAD
NCBI Gene 305120 ENTREZGENE
PANTHER PTHR14732 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RPAP2_Rtr1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpap2 PhenoGen
PROSITE ZF_RTR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZL24_RAT UniProtKB/TrEMBL
  A0A8I5ZQT7_RAT UniProtKB/TrEMBL
  A0A8I6A1E7_RAT UniProtKB/TrEMBL
  A0A8I6ABY8_RAT UniProtKB/TrEMBL
  A0A8I6AFB1_RAT UniProtKB/TrEMBL
  A0A8I6G7H2_RAT UniProtKB/TrEMBL
  A0A8L2PZW5_RAT UniProtKB/TrEMBL
  D4A672 ENTREZGENE
  Q5I0E6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary D4A5J9 UniProtKB/Swiss-Prot
  D4A672 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-26 Rpap2  RNA polymerase II associated protein 2  RGD1309034  similar to Expressed sequence AW060207  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1309034  similar to Expressed sequence AW060207  RGD1309034_predicted  similar to Expressed sequence AW060207 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1309034_predicted  similar to Expressed sequence AW060207 (predicted)  LOC305120_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC305120_predicted  similar to Expressed sequence AW060207 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL