Gtf2e2 (general transcription factor IIE subunit 2) - Rat Genome Database

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Gene: Gtf2e2 (general transcription factor IIE subunit 2) Rattus norvegicus
Analyze
Symbol: Gtf2e2
Name: general transcription factor IIE subunit 2
RGD ID: 1310134
Description: Predicted to enable RNA polymerase II general transcription initiation factor activity. Predicted to be involved in transcription initiation at RNA polymerase II promoter. Predicted to be located in cytosol and nuclear speck. Predicted to be part of transcription factor TFIID complex and transcription factor TFIIE complex. Human ortholog(s) of this gene implicated in nonphotosensitive trichothiodystrophy 6. Orthologous to human GTF2E2 (general transcription factor IIE subunit 2); PARTICIPATES IN RNA polymerase II transcription initiation pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-Tetrachlorodibenzofuran; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: general transcription factor II E, polypeptide 2 (beta subunit); general transcription factor IIE, polypeptide 2 (beta subunit); general transcription factor IIE, polypeptide 2, beta; LOC306516; transcription initiation factor IIE subunit beta
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21658,399,307 - 58,449,467 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1658,399,107 - 58,449,371 (-)Ensembl
Rnor_6.01662,113,846 - 62,164,339 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1662,113,854 - 62,164,135 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01661,778,116 - 61,827,126 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41662,168,709 - 62,218,868 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11662,168,793 - 62,215,640 (-)NCBI
Celera1656,436,672 - 56,485,957 (-)NCBICelera
Cytogenetic Map16q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Structural insights into transcription initiation by RNA polymerase II. Grunberg S and Hahn S, Trends Biochem Sci. 2013 Dec;38(12):603-11. doi: 10.1016/j.tibs.2013.09.002. Epub 2013 Oct 11.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:8889548   PMID:12947022   PMID:22658674   PMID:27193682  


Genomics

Comparative Map Data
Gtf2e2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21658,399,307 - 58,449,467 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1658,399,107 - 58,449,371 (-)Ensembl
Rnor_6.01662,113,846 - 62,164,339 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1662,113,854 - 62,164,135 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01661,778,116 - 61,827,126 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41662,168,709 - 62,218,868 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11662,168,793 - 62,215,640 (-)NCBI
Celera1656,436,672 - 56,485,957 (-)NCBICelera
Cytogenetic Map16q12.3NCBI
GTF2E2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38830,578,318 - 30,658,236 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl830,578,318 - 30,658,236 (-)EnsemblGRCh38hg38GRCh38
GRCh37830,435,835 - 30,515,753 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36830,555,573 - 30,635,280 (-)NCBINCBI36hg18NCBI36
Build 34830,555,574 - 30,635,274NCBI
Celera829,394,512 - 29,474,259 (-)NCBI
Cytogenetic Map8p12NCBI
HuRef828,980,483 - 29,060,402 (-)NCBIHuRef
CHM1_1830,638,171 - 30,717,889 (-)NCBICHM1_1
T2T-CHM13v2.0830,857,764 - 30,937,703 (-)NCBI
Gtf2e2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39834,221,942 - 34,267,201 (+)NCBIGRCm39mm39
GRCm39 Ensembl834,221,861 - 34,267,201 (+)Ensembl
GRCm38833,731,914 - 33,777,173 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl833,731,833 - 33,777,173 (+)EnsemblGRCm38mm10GRCm38
MGSCv37834,842,386 - 34,887,645 (+)NCBIGRCm37mm9NCBIm37
MGSCv36835,197,977 - 35,243,099 (+)NCBImm8
Celera836,366,841 - 36,414,460 (+)NCBICelera
Cytogenetic Map8A4NCBI
Gtf2e2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554637,000,868 - 7,084,207 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554637,000,868 - 7,080,778 (-)NCBIChiLan1.0ChiLan1.0
GTF2E2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1827,071,634 - 27,151,147 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl827,071,634 - 27,151,147 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0829,881,879 - 29,961,554 (-)NCBIMhudiblu_PPA_v0panPan3
GTF2E2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11633,697,872 - 33,778,247 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1633,707,420 - 33,777,851 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1634,160,349 - 34,240,505 (+)NCBI
ROS_Cfam_1.01635,726,970 - 35,807,607 (+)NCBI
ROS_Cfam_1.0 Ensembl1635,726,875 - 35,807,601 (+)Ensembl
UMICH_Zoey_3.11633,825,507 - 33,905,842 (+)NCBI
UNSW_CanFamBas_1.01634,395,537 - 34,475,827 (+)NCBI
UU_Cfam_GSD_1.01634,516,308 - 34,596,621 (+)NCBI
Gtf2e2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494356,834,974 - 56,953,968 (+)NCBI
SpeTri2.0NW_004936792409,637 - 484,010 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GTF2E2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1554,444,470 - 54,531,213 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11554,444,480 - 54,525,566 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21561,839,232 - 61,920,626 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GTF2E2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1828,690,056 - 28,772,470 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605213,333,790 - 13,418,142 (+)NCBIVero_WHO_p1.0
Gtf2e2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248397,247,596 - 7,329,480 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248397,248,183 - 7,328,582 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D5Mgh2  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01661,815,479 - 61,816,040UniSTSRnor5.0
Rnor_5.0521,842,228 - 21,842,328UniSTSRnor5.0
RGSC_v3.4517,517,135 - 17,517,235UniSTSRGSC3.4
RGSC_v3.41662,207,989 - 62,208,550UniSTSRGSC3.4
RGSC_v3.4517,517,134 - 17,517,235RGDRGSC3.4
RGSC_v3.1517,517,134 - 17,517,235RGD
Celera516,536,980 - 16,537,080UniSTS
Celera1656,475,146 - 56,475,707UniSTS
RH 3.4 Map5100.9RGD
RH 3.4 Map5100.9UniSTS
RH 2.0 Map5107.5RGD
Cytogenetic Map16q12.3UniSTS
AI462509  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,399,344 - 58,399,477 (+)MAPPERmRatBN7.2
Rnor_6.01662,113,884 - 62,114,016NCBIRnor6.0
Rnor_5.01661,778,154 - 61,778,286UniSTSRnor5.0
RGSC_v3.41662,168,747 - 62,168,879UniSTSRGSC3.4
Celera1656,436,710 - 56,436,842UniSTS
Cytogenetic Map16q12.3UniSTS
PMC153767P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,438,972 - 58,439,170 (+)MAPPERmRatBN7.2
Rnor_6.01662,153,879 - 62,154,076NCBIRnor6.0
Rnor_5.01661,816,454 - 61,816,651UniSTSRnor5.0
RGSC_v3.41662,208,960 - 62,209,157UniSTSRGSC3.4
Celera1656,476,115 - 56,476,312UniSTS
Cytogenetic Map16q12.3UniSTS
AI835723  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,439,031 - 58,439,114 (+)MAPPERmRatBN7.2
Rnor_6.01662,153,938 - 62,154,020NCBIRnor6.0
Rnor_5.01661,816,513 - 61,816,595UniSTSRnor5.0
RGSC_v3.41662,209,019 - 62,209,101UniSTSRGSC3.4
Celera1656,476,174 - 56,476,256UniSTS
Cytogenetic Map16q12.3UniSTS
BE097303  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,439,152 - 58,439,336 (+)MAPPERmRatBN7.2
Rnor_6.01662,154,059 - 62,154,242NCBIRnor6.0
Rnor_5.01661,816,634 - 61,816,817UniSTSRnor5.0
RGSC_v3.41662,209,140 - 62,209,323UniSTSRGSC3.4
Celera1656,476,295 - 56,476,478UniSTS
RH 3.4 Map16541.81UniSTS
Cytogenetic Map16q12.3UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:313
Count of miRNA genes:203
Interacting mature miRNAs:232
Transcripts:ENSRNOT00000058872
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 40 57 41 19 41 2 2 74 35 41 11 2
Low 3 6 9 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000058872   ⟹   ENSRNOP00000055659
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1658,399,107 - 58,449,371 (-)Ensembl
Rnor_6.0 Ensembl1662,113,854 - 62,164,135 (-)Ensembl
RefSeq Acc Id: NM_001107318   ⟹   NP_001100788
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21658,399,307 - 58,449,227 (-)NCBI
Rnor_6.01662,113,846 - 62,164,135 (-)NCBI
Rnor_5.01661,778,116 - 61,827,126 (-)NCBI
RGSC_v3.41662,168,709 - 62,218,868 (-)RGD
Celera1656,436,672 - 56,485,957 (-)RGD
Sequence:
RefSeq Acc Id: XM_006253230   ⟹   XP_006253292
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21658,399,307 - 58,449,467 (-)NCBI
Rnor_6.01662,113,846 - 62,164,338 (-)NCBI
Rnor_5.01661,778,116 - 61,827,126 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253231   ⟹   XP_006253293
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21658,403,016 - 58,449,467 (-)NCBI
Rnor_6.01662,115,075 - 62,164,339 (-)NCBI
Rnor_5.01661,778,116 - 61,827,126 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039094546   ⟹   XP_038950474
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21658,399,307 - 58,448,589 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001100788   ⟸   NM_001107318
- UniProtKB: D3ZCP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253292   ⟸   XM_006253230
- Peptide Label: isoform X1
- UniProtKB: D3ZCP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253293   ⟸   XM_006253231
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000055659   ⟸   ENSRNOT00000058872
RefSeq Acc Id: XP_038950474   ⟸   XM_039094546
- Peptide Label: isoform X1
Protein Domains
TFIIE beta

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZCP9-F1-model_v2 AlphaFold D3ZCP9 1-291 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310134 AgrOrtholog
BioCyc Gene G2FUF-11124 BioCyc
Ensembl Genes ENSRNOG00000014422 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000055659 ENTREZGENE
  ENSRNOP00000055659.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000058872 ENTREZGENE
  ENSRNOT00000058872.4 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro TFA2_Winged_2 UniProtKB/TrEMBL
  TFIIE-bsu UniProtKB/TrEMBL
  TFIIE_bsu_DNA-bd UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report rno:306516 UniProtKB/TrEMBL
NCBI Gene 306516 ENTREZGENE
PANTHER PTHR12716 UniProtKB/TrEMBL
Pfam TFA2_Winged_2 UniProtKB/TrEMBL
  TFIIE_beta UniProtKB/TrEMBL
PhenoGen Gtf2e2 PhenoGen
PIRSF TFIIE-beta UniProtKB/TrEMBL
PROSITE TFIIE_BETA_C UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt D3ZCP9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-26 Gtf2e2  general transcription factor IIE subunit 2  Gtf2e2  general transcription factor IIE, polypeptide 2, beta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-02-26 Gtf2e2  general transcription factor IIE, polypeptide 2, beta  Gtf2e2  general transcription factor IIE, polypeptide 2 (beta subunit)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-30 Gtf2e2  general transcription factor IIE, polypeptide 2 (beta subunit)  Gtf2e2  general transcription factor II E, polypeptide 2 (beta subunit)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Gtf2e2  general transcription factor II E, polypeptide 2 (beta subunit)   Gtf2e2_predicted  general transcription factor II E, polypeptide 2 (beta subunit) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Gtf2e2_predicted  general transcription factor II E, polypeptide 2 (beta subunit) (predicted)      Symbol and Name status set to approved 70820 APPROVED