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Gene: Prpf6 (pre-mRNA processing factor 6) Rattus norvegicus
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Symbol: Prpf6
Name: pre-mRNA processing factor 6
Description: Predicted to have several functions, including androgen receptor binding activity; ribonucleoprotein complex binding activity; and transcription coactivator activity. Predicted to be involved in RNA localization; positive regulation of transcription by RNA polymerase II; and spliceosomal tri-snRNP complex assembly. Predicted to localize to the nucleus. Human ortholog(s) of this gene implicated in retinitis pigmentosa 60. Orthologous to human PRPF6 (pre-mRNA processing factor 6); PARTICIPATES IN spliceosome pathway; INTERACTS WITH Aroclor 1254; bisphenol A; 17alpha-ethynylestradiol (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC366276; MGC156816; pre-mRNA-processing factor 6; PRP6 homolog; PRP6 pre-mRNA processing factor 6 homolog; PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae); PRP6 pre-mRNA splicing factor 6 homolog; PRP6 pre-mRNA splicing factor 6 homolog (S. cerevisiae); RGD1307103; similar to RIKEN cDNA 1190003A07; U5 snRNP-associated 102 kDa protein; U5-102 kDa protein
Orthologs:
Homo sapiens (human) : PRPF6 (pre-mRNA processing factor 6)  HGNC  Alliance
Mus musculus (house mouse) : Prpf6 (pre-mRNA splicing factor 6)  MGI  Alliance
Pan paniscus (bonobo/pygmy chimpanzee) : PRPF6 (pre-mRNA processing factor 6)
Canis lupus familiaris (dog) : PRPF6 (pre-mRNA processing factor 6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Prpf6 (pre-mRNA processing factor 6)
Sus scrofa (pig) : PRPF6 (pre-mRNA processing factor 6)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03177,098,137 - 177,162,937 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3177,098,073 - 177,162,916 (+)Ensembl
Rnor_5.03180,807,600 - 180,871,661 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,740,406 - 170,804,674 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13170,646,458 - 170,710,709 (+)NCBI
Celera3163,816,537 - 163,880,658 (-)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Prpf6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1307103
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.