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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle organization
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Accession:GO:0016050 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vesicle.
Synonyms:exact_synonym: vesicle organisation
 related_synonym: vesicle organization and biogenesis



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vesicle organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Als2 alsin Rho guanine nucleotide exchange factor ALS2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:16085057)
Ensembl
RGD
PMID:16085057 GO_REF:0000107 NCBI chr 9:60,613,182...60,686,394
Ensembl chr 9:60,613,167...60,670,737
JBrowse link
G Cadps calcium dependent secretion activator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3583931 (PMID:15820695)
Ensembl
RGD
PMID:15820695 GO_REF:0000107 NCBI chr15:12,289,803...12,742,786
Ensembl chr15:12,290,262...12,742,779
JBrowse link
G Cav1 caveolin 1 involved_in ISO (PMID:12743374) RGD PMID:12743374 NCBI chr 4:45,640,624...45,673,708
Ensembl chr 4:45,634,918...45,673,705
JBrowse link
G Cav2 caveolin 2 involved_in ISO (PMID:12743374) RGD PMID:12743374 NCBI chr 4:45,616,766...45,624,144
Ensembl chr 4:45,616,712...45,624,244
JBrowse link
G Cd2ap CD2-associated protein IDA RGD PMID:15001553 RGD:1302417 NCBI chr 9:18,086,744...18,182,744
Ensembl chr 9:18,086,984...18,182,199
JBrowse link
G Fbxo5 F-box protein 5 acts_upstream_of_or_within ISO (PMID:17190794) RGD PMID:17190794 NCBI chr 1:42,196,068...42,202,437
Ensembl chr 1:42,196,068...42,202,437
JBrowse link
G Fnbp1l formin binding protein 1-like involved_in ISO (PMID:20730103) RGD PMID:20730103 NCBI chr 2:210,647,241...210,748,203
Ensembl chr 2:210,647,246...210,738,455
JBrowse link
G Plekhf1 pleckstrin homology and FYVE domain containing 1 involved_in ISO (PMID:22115783) RGD PMID:22115783 NCBI chr 1:90,908,304...90,915,862
Ensembl chr 1:90,904,742...90,915,820
JBrowse link
G Sar1b secretion associated, Ras related GTPase 1B involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr10:36,024,415...36,054,069
Ensembl chr10:36,024,382...36,054,066
JBrowse link
G Snx10 sorting nexin 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:80,612,648...80,677,005
Ensembl chr 4:80,612,669...80,676,996
JBrowse link
G Snx11 sorting nexin 11 involved_in ISO
IBA
(PMID:23615901)
GO_REF:0000033
RGD
GO_Central
PMID:23615901 GO_REF:0000033 NCBI chr10:81,742,020...81,752,778
Ensembl chr10:81,742,024...81,752,712
JBrowse link
G Sort1 sortilin 1 involved_in ISO
IBA
IEA
(PMID:15992544)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
(MGI:3582104|PMID:15992544)
RGD
GO_Central
TreeGrafter
Ensembl
PMID:15992544 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:3582104 NCBI chr 2:195,924,033...196,002,354
Ensembl chr 2:195,924,099...196,002,354
JBrowse link
G Wasl WASP like actin nucleation promoting factor involved_in IDA PMID:20730103 BHF-UCL PMID:20730103 RGD:8554834 NCBI chr 4:53,083,536...53,132,061
Ensembl chr 4:53,083,536...53,132,022
JBrowse link
acrosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07054262.1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 3:138,778,150...138,779,864 JBrowse link
G Acrbp acrosin binding protein involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:5789676|PMID:27303034)
UniProt
Ensembl
RGD
PMID:27303034 GO_REF:0000024 GO_REF:0000107 MGI:5789676 NCBI chr 4:157,851,149...157,864,211
Ensembl chr 4:157,841,841...157,864,213
JBrowse link
G Actl7a actin-like 7a involved_in ISO
ISS
(MGI:6790748|PMID:32923619)
GO_REF:0000024
RGD
UniProt
PMID:32923619 GO_REF:0000024 MGI:6790748 NCBI chr 5:71,447,447...71,450,440
Ensembl chr 5:71,447,071...71,450,908
JBrowse link
G Actl9 actin-like 9 involved_in ISO (PMID:33626338)
(MGI:6515844|PMID:33626338)
RGD PMID:33626338 MGI:6515844 NCBI chr 7:14,234,504...14,235,881
Ensembl chr 7:14,234,504...14,235,881
JBrowse link
G Actl9b actin-like 9b involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:63,830,481...63,831,818
Ensembl chr 1:63,830,223...63,831,822
JBrowse link
G Agfg1 ArfGAP with FG repeats 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2182772 (PMID:11711676), (PMID:14724135)
GO_Central
RGD
PMID:11711676 PMID:14724135 GO_REF:0000033 NCBI chr 9:84,124,845...84,182,615
Ensembl chr 9:84,125,120...84,178,128
JBrowse link
G Agfg1-ps1 ArfGAP with FG repeats 1, pseudogene 1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:138,777,896...138,779,912 JBrowse link
G Agfg2 ArfGAP with FG repeats 2 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr12:19,012,228...19,048,433
Ensembl chr12:19,012,258...19,048,421
JBrowse link
G Ccdc136 coiled-coil domain containing 136 involved_in ISO
IBA
(MGI:5816406|PMID:27076447)
GO_REF:0000033
RGD
GO_Central
PMID:27076447 GO_REF:0000033 MGI:5816406 NCBI chr 4:57,997,825...58,027,598
Ensembl chr 4:57,997,853...58,027,646
JBrowse link
G Ccdc38 coiled-coil domain containing 38 involved_in ISO (MGI:7581111|PMID:37709195) RGD PMID:37709195 MGI:7581111 NCBI chr 7:28,055,883...28,129,938
Ensembl chr 7:28,059,798...28,130,441
JBrowse link
G Ccdc42 coiled-coil domain containing 42 acts_upstream_of_or_within ISO MGI:3800251 (PMID:26945718) RGD PMID:26945718 NCBI chr10:53,289,956...53,300,135
Ensembl chr10:53,289,956...53,300,135
JBrowse link
G Chn2 chimerin 2 IEP RGD PMID:8440677 RGD:724725 NCBI chr 4:83,148,616...83,407,711
Ensembl chr 4:83,147,983...83,407,709
JBrowse link
G Fabp9 fatty acid binding protein 9 IEP RGD PMID:7958448 RGD:634410 NCBI chr 2:91,591,842...91,595,873
Ensembl chr 2:91,592,298...91,595,873
JBrowse link
G Fam209 family with sequence similarity 209 involved_in ISO (MGI:6865809|PMID:34471926) RGD PMID:34471926 MGI:6865809 NCBI chr 3:161,240,062...161,241,747
Ensembl chr 3:161,240,034...161,241,755
JBrowse link
G Garin1a golgi associated RAB2 interactor 1A involved_in ISS
ISO
GO_REF:0000024
(MGI:6814641|PMID:34714330)
UniProt
RGD
PMID:34714330 GO_REF:0000024 MGI:6814641 NCBI chr 4:57,880,019...57,890,824
Ensembl chr 4:57,880,019...57,890,820
JBrowse link
G Garin1b golgi associated RAB2 interactor 1B involved_in ISS
ISO
GO_REF:0000024
(MGI:6814641|PMID:34714330)
UniProt
RGD
PMID:34714330 GO_REF:0000024 MGI:6814641 NCBI chr 4:57,915,184...57,938,593
Ensembl chr 4:57,920,790...57,938,591
JBrowse link
G KIAA0319l KIAA0319 like acts_upstream_of_or_within ISO MGI:6111779 (PMID:29991750) RGD PMID:29991750 NCBI chr 5:139,047,847...139,140,709
Ensembl chr 5:139,046,143...139,140,715
JBrowse link
G Mfsd14a major facilitator superfamily domain containing 14A acts_upstream_of_or_within ISO MGI:5763015 (PMID:27107036) RGD PMID:27107036 NCBI chr 2:204,579,174...204,611,600
Ensembl chr 2:204,579,174...204,659,319
JBrowse link
G Nectin2 nectin cell adhesion molecule 2 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2183405 (PMID:10733589)
GO_Central
RGD
PMID:10733589 GO_REF:0000033 NCBI chr 1:79,372,123...79,407,379
Ensembl chr 1:79,372,119...79,407,360
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 acts_upstream_of_or_within ISO MGI:2683481 (PMID:13129914) RGD PMID:13129914 NCBI chr10:59,533,042...59,591,808
Ensembl chr10:59,534,117...59,591,808
JBrowse link
G Pdcl2 phosducin-like 2 acts_upstream_of_or_within ISO MGI:7546801 (PMID:36278277) RGD PMID:36278277 NCBI chr14:31,874,563...31,895,265
Ensembl chr14:31,874,578...31,895,272
JBrowse link
G Pfn4 profilin family, member 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:7333311|PMID:35950913)
UniProt
RGD
PMID:35950913 GO_REF:0000024 MGI:7333311 NCBI chr 6:27,786,619...27,796,710
Ensembl chr 6:27,786,619...27,796,710
JBrowse link
G Pla2g3 phospholipase A2, group III acts_upstream_of_or_within ISO MGI:4461174 (PMID:20424323) RGD PMID:20424323 NCBI chr14:78,367,625...78,373,913
Ensembl chr14:78,368,105...78,373,913
JBrowse link
G Pln phospholamban involved_in ISS
ISO
GO_REF:0000024
(MGI:6281843|PMID:30733280)
UniProt
RGD
PMID:30733280 GO_REF:0000024 MGI:6281843 NCBI chr20:32,629,537...32,639,559 JBrowse link
G Poc1b POC1 centriolar protein B acts_upstream_of_or_within ISO (PMID:30298696) RGD PMID:30298696 NCBI chr 7:33,924,112...34,025,908
Ensembl chr 7:33,924,189...34,025,903
JBrowse link
G Pvr PVR cell adhesion molecule involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 1:79,561,294...79,576,700
Ensembl chr 1:79,546,879...79,576,715
JBrowse link
G Rfx2 regulatory factor X2 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5708804|PMID:26162102)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:26162102 GO_REF:0000024 GO_REF:0000107 MGI:5708804 NCBI chr 9:1,604,636...1,671,220
Ensembl chr 9:1,604,646...1,671,027
JBrowse link
G Sec23ip SEC23 interacting protein acts_upstream_of_or_within ISO MGI:5085903 (PMID:21640725) RGD PMID:21640725 NCBI chr 1:183,320,950...183,363,944
Ensembl chr 1:183,321,075...183,363,920
JBrowse link
G Slc9a8 solute carrier family 9 member A8 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5918112|PMID:28476888)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:28476888 GO_REF:0000024 GO_REF:0000107 MGI:5918112 NCBI chr 3:156,147,855...156,198,497
Ensembl chr 3:156,148,104...156,198,471
JBrowse link
G Spaca1 sperm acrosome associated 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:5439282 (PMID:22949614)
GO_Central
RGD
PMID:22949614 GO_REF:0000033 NCBI chr 5:48,525,406...48,540,676
Ensembl chr 5:48,525,406...48,540,711
JBrowse link
G Spink2 serine peptidase inhibitor, Kazal type 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:6114299|PMID:28554943)
UniProt
RGD
PMID:28554943 GO_REF:0000024 MGI:6114299 NCBI chr14:30,967,682...30,974,326
Ensembl chr14:30,967,714...30,974,326
JBrowse link
G Sppl2c signal peptide peptidase like 2C involved_in ISO (MGI:6281843|PMID:30733280), (MGI:7387163|PMID:30733281) RGD PMID:30733280 PMID:30733281 MGI:6281843 MGI:7387163 NCBI chr10:89,095,279...89,097,487
Ensembl chr10:89,095,261...89,098,580
JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within ISO MGI:1856684 (PMID:24239381) RGD PMID:24239381 NCBI chr 3:140,768,537...140,787,010
Ensembl chr 3:140,768,537...140,785,121
JBrowse link
G Tbpl1 TATA-box binding protein like 1 acts_upstream_of_or_within ISO MGI:2182539 (PMID:11861477) RGD PMID:11861477 NCBI chr 1:22,777,892...22,803,305
Ensembl chr 1:22,778,459...22,803,122
Ensembl chr 1:22,778,459...22,803,122
JBrowse link
G Tmf1 TATA element modulatory factor 1 acts_upstream_of_or_within ISO MGI:4867389|MGI:4867392 (PMID:20691678) RGD PMID:20691678 NCBI chr 4:129,759,952...129,785,705
Ensembl chr 4:129,763,114...129,785,629
JBrowse link
G Tmprss12 transmembrane serine protease 12 involved_in ISO (MGI:7277967|PMID:35547804) RGD PMID:35547804 MGI:7277967 NCBI chr 7:131,433,158...131,445,806
Ensembl chr 7:131,433,484...131,445,791
JBrowse link
G Txndc8 thioredoxin domain containing 8 IEP RGD PMID:15181017 RGD:1303999 NCBI chr 5:72,749,708...72,785,858
Ensembl chr 5:72,749,725...72,785,931
JBrowse link
G Vps13b vacuolar protein sorting 13 homolog B involved_in ISO (MGI:6467831|PMID:31218450) RGD PMID:31218450 MGI:6467831 NCBI chr 7:66,557,862...67,128,429
Ensembl chr 7:66,558,471...67,128,429
JBrowse link
G Zpbp zona pellucida binding protein involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:3762589 (PMID:17664285)
GO_Central
RGD
PMID:17664285 GO_REF:0000033 NCBI chr14:85,830,971...86,030,778
Ensembl chr14:85,833,548...86,033,095
JBrowse link
G Zpbp2 zona pellucida binding protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000118
MGI:3762590 (PMID:17664285)
GO_REF:0000033
TreeGrafter
RGD
GO_Central
PMID:17664285 GO_REF:0000033 GO_REF:0000118 NCBI chr10:83,558,772...83,567,511
Ensembl chr10:83,559,016...83,567,508
JBrowse link
autophagosome-endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rubcnl rubicon like autophagy enhancer involved_in ISO
IBA
(PMID:28306502)
GO_REF:0000033
RGD
GO_Central
PMID:28306502 GO_REF:0000033 NCBI chr15:50,332,458...50,377,494
Ensembl chr15:50,332,418...50,400,849
JBrowse link
autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ADP-ribosylation factor like GTPase 8B involved_in ISO
ISS
(PMID:28325809)
GO_REF:0000024
RGD
UniProt
PMID:28325809 GO_REF:0000024 NCBI chr 4:141,748,634...141,792,605
Ensembl chr 4:141,748,587...141,792,596
JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO
IBA
(PMID:30538141)
GO_REF:0000033
(MGI:6273736|PMID:30538141)
RGD
GO_Central
PMID:30538141 GO_REF:0000033 MGI:6273736 NCBI chr 5:153,292,722...153,312,143
Ensembl chr 5:153,292,751...153,312,139
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (MGI:5698740|PMID:26450516) RGD PMID:26450516 MGI:5698740 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
JBrowse link
G Diaph3 diaphanous-related formin 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:33036023)
Ensembl
RGD
PMID:33036023 GO_REF:0000107 NCBI chr15:62,543,375...63,013,060
Ensembl chr15:62,543,375...63,012,975
JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:6159303|PMID:29727621)
UniProt
Ensembl
RGD
PMID:29727621 GO_REF:0000024 GO_REF:0000107 MGI:6159303 NCBI chr17:81,496,669...81,668,180
Ensembl chr17:81,496,670...81,668,029
JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:6159303|PMID:29727621)
UniProt
Ensembl
RGD
PMID:29727621 GO_REF:0000024 GO_REF:0000107 MGI:6159303 NCBI chr10:82,706,016...82,734,938
Ensembl chr10:82,701,098...82,734,938
JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 involved_in ISO
ISS
(PMID:28325809)
GO_REF:0000024
RGD
UniProt
PMID:28325809 GO_REF:0000024 NCBI chr10:88,313,837...88,366,182
Ensembl chr10:88,314,651...88,362,412
JBrowse link
G Rubcnl rubicon like autophagy enhancer involved_in ISO
IBA
(PMID:28306502)
GO_REF:0000033
RGD
GO_Central
PMID:28306502 GO_REF:0000033 NCBI chr15:50,332,458...50,377,494
Ensembl chr15:50,332,418...50,400,849
JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) RGD PMID:23023224 NCBI chr19:13,405,482...13,440,384
Ensembl chr19:13,405,501...13,440,384
JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in ISO (PMID:33422265) RGD PMID:33422265 NCBI chr 3:107,266,846...107,304,884
Ensembl chr 3:107,267,310...107,304,975
JBrowse link
calcium-dependent activation of synaptic vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Doc2a double C2 domain alpha involved_in IMP
ISO
IDA
PMID:22036572
(PMID:20150444)
RGD PMID:20150444 PMID:22036572 PMID:22036572 RGD:155230732, RGD:155230732 NCBI chr 1:181,457,415...181,462,528
Ensembl chr 1:181,458,390...181,462,030
JBrowse link
G Doc2b double C2 domain beta involved_in IMP
ISO
IDA
IEA
PMID:22036572
(PMID:20150444)
GO_REF:0000107
RGD
Ensembl
PMID:20150444 PMID:22036572 PMID:22036572 GO_REF:0000107, RGD:155230732, RGD:155230732 NCBI chr10:60,628,029...60,653,267
Ensembl chr10:60,628,029...60,653,267
JBrowse link
G Syt1 synaptotagmin 1 involved_in ISO (PMID:7954835) RGD PMID:7954835 NCBI chr 7:43,813,204...44,358,020
Ensembl chr 7:43,815,785...44,357,803
JBrowse link
G Syt2 synaptotagmin 2 involved_in ISO (PMID:17192432) RGD PMID:17192432 NCBI chr13:46,088,046...46,197,976
Ensembl chr13:46,185,282...46,193,859
JBrowse link
G Syt7 synaptotagmin 7 involved_in ISO (PMID:24267651) RGD PMID:24267651 NCBI chr 1:207,031,359...207,093,787
Ensembl chr 1:207,031,592...207,089,026
JBrowse link
G Syt9 synaptotagmin 9 involved_in IEA
ISO
GO_REF:0000107
(PMID:17521570)
Ensembl
RGD
PMID:17521570 GO_REF:0000107 NCBI chr 1:161,275,882...161,456,384
Ensembl chr 1:161,275,734...161,455,007
JBrowse link
COPI coating of Golgi vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfgap2 ADP-ribosylation factor GTPase activating protein 2 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 3:77,236,305...77,248,445
Ensembl chr 3:77,236,322...77,248,455
JBrowse link
G Arfgap3 ADP-ribosylation factor GTPase activating protein 3 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 7:114,432,873...114,479,206
Ensembl chr 7:114,432,873...114,479,208
JBrowse link
G Gbf1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 involved_in ISO (PMID:12047556), (PMID:17956946) RGD PMID:12047556 PMID:17956946 NCBI chr 1:245,018,535...245,147,052
Ensembl chr 1:245,018,568...245,147,042
JBrowse link
G Tmed9 transmembrane p24 trafficking protein 9 involved_in ISO
IBA
IEA
(PMID:18287528)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
RGD
GO_Central
TreeGrafter
Ensembl
PMID:18287528 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr17:9,029,646...9,034,160
Ensembl chr17:9,029,646...9,034,176
JBrowse link
COPI-coated vesicle budding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tmed10 transmembrane p24 trafficking protein 10 involved_in ISO
IEA
ISS
(PMID:10052452)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:10052452 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:104,991,843...105,026,705
Ensembl chr 6:104,991,838...105,026,753
JBrowse link
COPII vesicle coating term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul3 cullin 3 involved_in ISO
IEA
ISS
(PMID:22358839)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:22358839 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:81,592,641...81,670,428
Ensembl chr 9:81,592,641...81,670,462
JBrowse link
G Klhl12 kelch-like family member 12 involved_in IEA
IBA
ISS
ISO
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024
(PMID:22358839), (PMID:27716508)
Ensembl
GO_Central
UniProt
RGD
PMID:22358839 PMID:27716508 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:45,899,913...45,933,648
Ensembl chr13:45,899,928...45,933,643
JBrowse link
G Pdcd6 programmed cell death 6 involved_in ISO
ISS
(PMID:27716508)
GO_REF:0000024
RGD
UniProt
PMID:27716508 GO_REF:0000024 NCBI chr 1:28,966,518...28,982,188
Ensembl chr 1:28,966,518...28,982,189
JBrowse link
G Pef1 penta-EF hand domain containing 1 involved_in ISO
IBA
IEA
ISS
(PMID:27716508)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:27716508 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:142,451,791...142,475,061
Ensembl chr 5:142,451,778...142,475,067
JBrowse link
G Ppa1 inorganic pyrophosphatase 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:29,590,733...29,617,711
Ensembl chr20:29,590,707...29,619,215
JBrowse link
G Preb prolactin regulatory element binding involved_in IDA PMID:11422940 UniProt PMID:11422940 RGD:11344947 NCBI chr 6:25,418,805...25,422,594
Ensembl chr 6:25,418,776...25,422,590
JBrowse link
G Sar1a secretion associated, Ras related GTPase 1A involved_in IEA
ISO
GO_REF:0000107
(PMID:23433038), (PMID:32358066)
Ensembl
RGD
PMID:23433038 PMID:32358066 GO_REF:0000107 NCBI chr20:29,623,529...29,635,935
Ensembl chr20:29,623,553...29,635,935
JBrowse link
G Sar1b secretion associated, Ras related GTPase 1B involved_in ISS
ISO
GO_REF:0000024
(PMID:23433038), (PMID:32358066)
UniProt
RGD
PMID:23433038 PMID:32358066 GO_REF:0000024 NCBI chr10:36,024,415...36,054,069
Ensembl chr10:36,024,382...36,054,066
JBrowse link
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:9,229,687...9,264,837
Ensembl chr 3:9,229,687...9,264,273
JBrowse link
G Sec16b SEC16 homolog B, endoplasmic reticulum export factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:69,665,757...69,727,199
Ensembl chr13:69,684,291...69,727,196
JBrowse link
G Tfg trafficking from ER to golgi regulator involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:43,885,542...43,911,976
Ensembl chr11:43,885,661...43,911,976
JBrowse link
COPII-coated vesicle budding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 4:146,877,739...146,891,130
Ensembl chr 4:146,875,524...146,891,173
JBrowse link
G Sec13-ps2 SEC13 homolog, nuclear pore and COPII coat complex component, pseudogene 2 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr18:967,396...968,674
Ensembl chr18:967,394...968,680
Ensembl chr18:967,394...968,680
JBrowse link
G Vapa VAMP associated protein A involved_in ISO (PMID:18713837) RGD PMID:18713837 NCBI chr 9:105,177,904...105,208,400
Ensembl chr 9:105,177,907...105,207,847
JBrowse link
G Vapb VAMP associated protein B and C involved_in ISO (PMID:18713837) RGD PMID:18713837 NCBI chr 3:162,535,974...162,578,747
Ensembl chr 3:162,535,905...162,573,763
JBrowse link
COPII-coated vesicle cargo loading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cideb cell death-inducing DFFA-like effector b involved_in ISO (MGI:6399987|PMID:30858281) RGD PMID:30858281 MGI:6399987 NCBI chr15:29,252,208...29,256,482
Ensembl chr15:29,252,213...29,256,605
JBrowse link
G Mia3 MIA SH3 domain ER export factor 3 involved_in ISO (PMID:27138255) RGD PMID:27138255 NCBI chr13:94,970,421...95,012,071
Ensembl chr13:94,970,424...95,011,972
JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO (PMID:17684057) RGD PMID:17684057 NCBI chr14:94,422,219...94,448,799
Ensembl chr14:94,415,275...94,448,248
JBrowse link
G Sar1a secretion associated, Ras related GTPase 1A involved_in ISO (PMID:17499046), (PMID:18843296), (PMID:23433038) RGD PMID:17499046 PMID:18843296 PMID:23433038 NCBI chr20:29,623,529...29,635,935
Ensembl chr20:29,623,553...29,635,935
JBrowse link
G Sar1b secretion associated, Ras related GTPase 1B involved_in ISS
ISO
GO_REF:0000024
(PMID:23433038), (PMID:32358066), (PMID:33186557)
UniProt
RGD
PMID:23433038 PMID:32358066 PMID:33186557 GO_REF:0000024 NCBI chr10:36,024,415...36,054,069
Ensembl chr10:36,024,382...36,054,066
JBrowse link
G Scap SREBF chaperone involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 8:110,306,026...110,360,677
Ensembl chr 8:110,306,031...110,360,666
JBrowse link
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component involved_in ISO (PMID:17499046), (PMID:18843296) RGD PMID:17499046 PMID:18843296 NCBI chr 4:146,877,739...146,891,130
Ensembl chr 4:146,875,524...146,891,173
JBrowse link
G Sec23a Sec23 homolog A, COPII coat complex component involved_in ISO
IBA
UniProtKB:P15303 (PMID:17499046), (PMID:18843296), (PMID:8898360)
GO_REF:0000033
RGD
GO_Central
PMID:8898360 PMID:17499046 PMID:18843296 GO_REF:0000033 NCBI chr 6:76,658,793...76,706,125
Ensembl chr 6:76,658,427...76,706,035
JBrowse link
G Sec23b Sec23 homolog B, COPII coat complex component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:131,939,011...131,981,489
Ensembl chr 3:131,939,337...131,981,489
JBrowse link
G Sec24a SEC24 homolog A, COPII coat complex component involved_in ISO
IBA
(PMID:17499046), (PMID:18843296)
GO_REF:0000033
RGD
GO_Central
PMID:17499046 PMID:18843296 GO_REF:0000033 NCBI chr10:35,946,901...36,024,353
Ensembl chr10:35,947,031...36,024,353
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component involved_in ISO
IBA
(PMID:17499046), (PMID:18843296)
GO_REF:0000033
RGD
GO_Central
PMID:17499046 PMID:18843296 GO_REF:0000033 NCBI chr 2:218,562,670...218,632,753
Ensembl chr 2:218,562,676...218,632,699
JBrowse link
G Sec24c SEC24 homolog C, COPII coat complex component involved_in ISO
IBA
(PMID:17499046), (PMID:18843296)
GO_REF:0000033
RGD
GO_Central
PMID:17499046 PMID:18843296 GO_REF:0000033 NCBI chr15:3,602,460...3,624,524
Ensembl chr15:3,602,460...3,624,422
JBrowse link
G Sec24d SEC24 homolog D, COPII coat complex component involved_in ISO
IBA
(PMID:17499046), (PMID:18843296)
GO_REF:0000033
RGD
GO_Central
PMID:17499046 PMID:18843296 GO_REF:0000033 NCBI chr 2:211,418,557...211,526,588
Ensembl chr 2:211,418,623...211,526,587
JBrowse link
G Sec31a SEC31 homolog A, COPII coat complex component involved_in ISO
IBA
IEA
(PMID:17499046), (PMID:18843296)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
RGD
GO_Central
TreeGrafter
Ensembl
PMID:17499046 PMID:18843296 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr14:9,214,324...9,269,281
Ensembl chr14:9,214,349...9,269,273
JBrowse link
G Sec31b SEC31 homolog B, COPII coat complex component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:243,376,283...243,404,557
Ensembl chr 1:243,378,456...243,404,557
JBrowse link
G Surf4 surfeit 4 involved_in ISO (MGI:6510370|PMID:33186557) RGD PMID:33186557 MGI:6510370 NCBI chr 3:10,248,360...10,261,537
Ensembl chr 3:10,241,837...10,263,315
JBrowse link
G Tbc1d20 TBC1 domain family, member 20 involved_in ISO (PMID:17684057) RGD PMID:17684057 NCBI chr 3:140,768,537...140,787,010
Ensembl chr 3:140,768,537...140,785,121
JBrowse link
dense core granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baiap3 BAI1-associated protein 3 involved_in ISO (PMID:28626000) RGD PMID:28626000 NCBI chr10:14,260,269...14,273,019
Ensembl chr10:14,260,269...14,273,019
JBrowse link
G Ptprn protein tyrosine phosphatase, receptor type, N involved_in ISO
IEA
UniProtKB:Q6P4T1 (PMID:24843546)
GO_REF:0000107
RGD
Ensembl
PMID:24843546 GO_REF:0000107 NCBI chr 9:76,741,010...76,756,704
Ensembl chr 9:76,741,016...76,756,190
JBrowse link
G Snx19 sorting nexin 19 involved_in
acts_upstream_of_or_within
ISO UniProtKB:Q6P4T1 (PMID:24843546) RGD PMID:24843546 NCBI chr 8:28,829,881...28,867,600
Ensembl chr 8:28,829,886...28,867,061
JBrowse link
endosomal lumen acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp11 aquaporin 11 acts_upstream_of_or_within ISO MGI:3528447 (PMID:16107722) RGD PMID:16107722 NCBI chr 1:152,046,515...152,056,675
Ensembl chr 1:152,046,517...152,056,725
JBrowse link
G Faslg Fas ligand IDA RGD PMID:18045865 RGD:2315735 NCBI chr13:74,151,519...74,172,760
Ensembl chr13:74,154,954...74,162,215
JBrowse link
G Rnasek ribonuclease K involved_in ISO UniProtKB:Q15904 (PMID:26212330) RGD PMID:26212330 NCBI chr10:54,954,904...54,956,622
Ensembl chr10:54,951,991...54,956,601
JBrowse link
G Tmem9 transmembrane protein 9 involved_in ISO (PMID:30374053) RGD PMID:30374053 NCBI chr13:47,458,486...47,475,832
Ensembl chr13:47,458,498...47,475,832
JBrowse link
endosomal vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankfy1 ankyrin repeat and FYVE domain containing 1 involved_in ISO (PMID:15328530) RGD PMID:15328530 NCBI chr10:57,312,246...57,383,964
Ensembl chr10:57,312,246...57,383,964
JBrowse link
G Samd9 sterile alpha motif domain containing 9 involved_in ISO (PMID:24029230) RGD PMID:24029230 NCBI chr 4:31,164,639...31,184,278
Ensembl chr 4:31,164,510...31,184,322
JBrowse link
G Samd9l sterile alpha motif domain containing 9 like acts_upstream_of_or_within ISO (PMID:24029230) RGD PMID:24029230 NCBI chr 4:31,362,054...31,376,412
Ensembl chr 4:31,361,669...31,376,415
JBrowse link
G Tgfbrap1 transforming growth factor, beta receptor associated protein 1 involved_in ISO
IBA
(PMID:25266290)
GO_REF:0000033
RGD
GO_Central
PMID:25266290 GO_REF:0000033 NCBI chr 9:45,320,975...45,371,329
Ensembl chr 9:45,320,930...45,371,311
JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:21148287) RGD PMID:21148287 NCBI chr 8:44,684,129...44,698,568
Ensembl chr 8:44,684,127...44,698,568
JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in ISO
IBA
(PMID:23167963)
GO_REF:0000033
RGD
GO_Central
PMID:23167963 GO_REF:0000033 NCBI chr 3:107,266,846...107,304,884
Ensembl chr 3:107,267,310...107,304,975
JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in ISO
IBA
(PMID:23167963)
GO_REF:0000033
RGD
GO_Central
PMID:23167963 GO_REF:0000033 NCBI chr17:46,063,132...46,227,533
Ensembl chr17:46,063,124...46,227,791
JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in ISO
IEA
(PMID:15075231)
GO_REF:0000107
RGD
Ensembl
PMID:15075231 GO_REF:0000107 NCBI chr19:34,934,999...34,948,888
Ensembl chr19:34,934,961...34,948,887
JBrowse link
G Vps8 VPS8 subunit of CORVET complex involved_in ISO
IBA
(PMID:25266290)
GO_REF:0000033
RGD
GO_Central
PMID:25266290 GO_REF:0000033 NCBI chr11:79,402,236...79,634,234
Ensembl chr11:79,402,239...79,634,133
JBrowse link
endosome membrane tubulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coro1c coronin 1C involved_in ISO (PMID:30220460) RGD PMID:30220460 NCBI chr12:42,713,024...42,785,179
Ensembl chr12:42,712,991...42,785,179
JBrowse link
G Tmcc1 transmembrane and coiled-coil domain family 1 involved_in ISO
IBA
(PMID:30220460)
GO_REF:0000033
RGD
GO_Central
PMID:30220460 GO_REF:0000033 NCBI chr 4:149,069,252...149,239,585
Ensembl chr 4:149,069,260...149,239,620
JBrowse link
endosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aktip AKT interacting protein involved_in ISO
IEA
ISS
(PMID:18799622)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:18799622 GO_REF:0000024 GO_REF:0000107 NCBI chr19:15,866,811...15,877,123
Ensembl chr19:15,866,928...15,886,663
JBrowse link
G Anxa8 annexin A8 involved_in ISO
IBA
IEA
(PMID:18923148)
GO_REF:0000033
GO_REF:0000118
RGD
GO_Central
TreeGrafter
PMID:18923148 GO_REF:0000033 GO_REF:0000118 NCBI chr16:9,397,144...9,412,072
Ensembl chr16:9,397,113...9,412,043
JBrowse link
G Arfgef2 ADP ribosylation factor guanine nucleotide exchange factor 2 involved_in ISO
ISS
(PMID:20360857)
GO_REF:0000024
RGD
UniProt
PMID:20360857 GO_REF:0000024 NCBI chr 3:155,547,504...155,633,652
Ensembl chr 3:155,547,538...155,630,856
JBrowse link
G Cc2d1a coiled-coil and C2 domain containing 1A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:6458917 (PMID:26720614)
Ensembl
RGD
PMID:26720614 GO_REF:0000107 NCBI chr19:24,011,897...24,026,937
Ensembl chr19:24,011,938...24,026,936
JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in ISO (PMID:16041373) RGD PMID:16041373 NCBI chr11:3,337,478...3,364,015
Ensembl chr11:3,337,494...3,385,181
JBrowse link
G Dnajc13 DnaJ heat shock protein family (Hsp40) member C13 involved_in ISO (PMID:24643499) RGD PMID:24643499 NCBI chr 8:104,767,785...104,877,317
Ensembl chr 8:104,767,788...104,877,317
JBrowse link
G Dnm1 dynamin 1 involved_in ISO
IEA
(PMID:19706678)
GO_REF:0000107
RGD
Ensembl
PMID:19706678 GO_REF:0000107 NCBI chr 3:15,604,782...15,648,654
Ensembl chr 3:15,604,784...15,648,538
JBrowse link
G Exoc8 exocyst complex component 8 involved_in ISO (PMID:24344185) RGD PMID:24344185 NCBI chr19:52,855,010...52,857,499
Ensembl chr19:52,852,578...52,857,491
JBrowse link
G Fhip1b FHF complex subunit HOOK interacting protein 1B involved_in ISO
IEA
IBA
ISS
(PMID:18799622)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
TreeGrafter
GO_Central
Ensembl
UniProt
PMID:18799622 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:159,718,679...159,748,449
Ensembl chr 1:159,726,004...159,748,408
JBrowse link
G Hook1 hook microtubule-tethering protein 1 involved_in ISO (PMID:18799622) RGD PMID:18799622 NCBI chr 5:110,824,501...110,887,791
Ensembl chr 5:110,824,501...110,887,787
JBrowse link
G Hook2 hook microtubule-tethering protein 2 involved_in ISO (PMID:18799622) RGD PMID:18799622 NCBI chr19:23,151,869...23,170,139
Ensembl chr19:23,151,870...23,164,181
JBrowse link
G Hook3 hook microtubule-tethering protein 3 involved_in ISO (PMID:18799622) RGD PMID:18799622 NCBI chr16:65,954,293...66,058,812
Ensembl chr16:65,954,350...66,061,338
JBrowse link
G Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:4887551|PMID:19177150)
UniProt
RGD
PMID:19177150 GO_REF:0000024 MGI:4887551 NCBI chr 1:156,272,116...156,277,687
Ensembl chr 1:156,272,064...156,291,179
JBrowse link
G Lamtor1l1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 like 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:34,637,460...34,638,509
Ensembl chr  X:34,637,459...34,638,516
JBrowse link
G Laptm4b lysosomal protein transmembrane 4 beta involved_in ISO
IEA
ISS
(PMID:21224396)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21224396 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:65,434,525...65,477,386
Ensembl chr 7:65,434,394...65,477,383
JBrowse link
G Pheta1 PH domain containing endocytic trafficking adaptor 1 involved_in ISO
IBA
(PMID:21233288)
GO_REF:0000033
RGD
GO_Central
PMID:21233288 GO_REF:0000033 NCBI chr12:34,711,831...34,717,601
Ensembl chr12:34,711,810...34,717,081
JBrowse link
G Pheta2 PH domain containing endocytic trafficking adaptor 2 involved_in ISO
IBA
(PMID:21233288)
GO_REF:0000033
RGD
GO_Central
PMID:21233288 GO_REF:0000033 NCBI chr 7:113,855,437...113,861,910
Ensembl chr 7:113,857,249...113,861,871
JBrowse link
G Pi4k2a phosphatidylinositol 4-kinase type 2 alpha involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 1:240,902,804...240,929,234
Ensembl chr 1:240,902,855...240,929,337
JBrowse link
G Pi4k2b phosphatidylinositol 4-kinase type 2 beta involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:58,221,790...58,248,716
Ensembl chr14:58,220,437...58,248,673
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 IMP RGD PMID:12453151 RGD:2303129 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048
JBrowse link
G Plekha3 pleckstrin homology domain containing A3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:61,623,434...61,644,649
Ensembl chr 3:61,623,434...61,645,166
JBrowse link
G Plekhf1 pleckstrin homology and FYVE domain containing 1 involved_in ISO
IBA
(PMID:22115783)
GO_REF:0000033
RGD
GO_Central
PMID:22115783 GO_REF:0000033 NCBI chr 1:90,908,304...90,915,862
Ensembl chr 1:90,904,742...90,915,820
JBrowse link
G Plekhf2 pleckstrin homology and FYVE domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:24,091,077...24,106,758
Ensembl chr 5:24,090,688...24,106,601
JBrowse link
G Rab22a RAB22A, member RAS oncogene family involved_in ISO (PMID:11870209) RGD PMID:11870209 NCBI chr 3:162,459,727...162,506,129
Ensembl chr 3:162,459,726...162,506,137
JBrowse link
G Rab5a RAB5A, member RAS oncogene family involved_in IMP PMID:8043272 ParkinsonsUK-UCL PMID:8043272 RGD:2306269 NCBI chr 9:6,483,906...6,512,877
Ensembl chr 9:6,484,469...6,512,873
JBrowse link
G Rab5al1 Rab5a, member RAS oncogene family-like 1 involved_in IMP PMID:8043272 ParkinsonsUK-UCL PMID:8043272 RGD:2306269 NCBI chr14:68,332,360...68,334,470
Ensembl chr14:68,332,558...68,333,205
JBrowse link
G Rab5b RAB5B, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:7789520) RGD PMID:7789520 NCBI chr 7:1,109,449...1,128,348
Ensembl chr 7:1,109,454...1,128,268
JBrowse link
G Rab5c RAB5C, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:7789520) RGD PMID:7789520 NCBI chr10:85,642,553...85,666,142
Ensembl chr10:85,642,809...85,666,103
JBrowse link
G Rnf26 ring finger protein 26 involved_in ISO (PMID:27368102) RGD PMID:27368102 NCBI chr 8:44,454,551...44,456,745
Ensembl chr 8:44,454,292...44,457,331
JBrowse link
G Snx10 sorting nexin 10 involved_in ISO (PMID:17012226) RGD PMID:17012226 NCBI chr 4:80,612,648...80,677,005
Ensembl chr 4:80,612,669...80,676,996
JBrowse link
G Snx33 sorting nexin 33 involved_in ISO (PMID:21048941) RGD PMID:21048941 NCBI chr 8:57,315,861...57,328,522
Ensembl chr 8:57,317,161...57,327,538
JBrowse link
G Sqstm1 sequestosome 1 involved_in ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000118
GO_REF:0000033
(PMID:27368102)
UniProt
TreeGrafter
GO_Central
RGD
PMID:27368102 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr10:34,525,517...34,536,670
Ensembl chr10:34,525,519...34,536,673
JBrowse link
G Stx6 syntaxin 6 acts_upstream_of_or_within ISO (PMID:14668490) RGD PMID:14668490 NCBI chr13:67,332,329...67,378,580
Ensembl chr13:67,332,314...67,378,576
JBrowse link
G Tmem127 transmembrane protein 127 acts_upstream_of_or_within ISO MGI:5581337 (PMID:24334765) RGD PMID:24334765 NCBI chr 3:114,466,095...114,478,894
Ensembl chr 3:114,466,171...114,477,519
JBrowse link
G Usp50 ubiquitin specific peptidase 50 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:114,012,104...114,035,468
Ensembl chr 3:114,011,702...114,035,476
JBrowse link
G Usp8 ubiquitin specific peptidase 8 involved_in ISO
IBA
(MGI:4821940|PMID:16771824)
GO_REF:0000033
RGD
GO_Central
PMID:16771824 GO_REF:0000033 MGI:4821940 NCBI chr 3:113,962,136...114,009,683
Ensembl chr 3:113,962,164...114,009,666
JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:44,684,129...44,698,568
Ensembl chr 8:44,684,127...44,698,568
JBrowse link
G Vps18 VPS18 core subunit of CORVET and HOPS complexes involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:18799622)
(PMID:14668490)
GO_REF:0000033
RGD
GO_Central
PMID:14668490 PMID:18799622 GO_REF:0000033 NCBI chr 3:106,279,444...106,290,298
Ensembl chr 3:106,279,425...106,291,964
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated involved_in ISO (PMID:23918659) RGD PMID:23918659 NCBI chr 1:134,223,967...134,247,232
Ensembl chr 1:134,223,949...134,246,970
JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A acts_upstream_of_or_within ISO MGI:1100499 (PMID:26720614) RGD PMID:26720614 NCBI chr19:34,934,999...34,948,888
Ensembl chr19:34,934,961...34,948,887
JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B acts_upstream_of_or_within ISO MGI:1890520 (PMID:10637304), (PMID:26720614) RGD PMID:10637304 PMID:26720614 NCBI chr13:22,907,105...22,932,200
Ensembl chr13:22,907,109...22,932,229
JBrowse link
G Washc1 WASH complex subunit 1 involved_in
acts_upstream_of_or_within
ISO (PMID:20175130)
(PMID:26965651)
RGD PMID:20175130 PMID:26965651 NCBI chr 9:105,722,779...105,830,836
Ensembl chr 9:105,722,899...105,733,009
JBrowse link
G Washc4 WASH complex subunit 4 involved_in ISO
IBA
(PMID:23676666)
GO_REF:0000033
RGD
GO_Central
PMID:23676666 GO_REF:0000033 NCBI chr 7:20,187,905...20,240,228
Ensembl chr 7:20,187,922...20,240,226
JBrowse link
G Washc5 WASH complex subunit 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:90,884,192...90,936,096
Ensembl chr 7:90,884,197...90,936,103
JBrowse link
extracellular exosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd34 CD34 molecule involved_in ISO
ISS
(PMID:21835908)
GO_REF:0000024
RGD
UniProt
PMID:21835908 GO_REF:0000024 NCBI chr13:106,480,313...106,500,844
Ensembl chr13:106,480,043...106,499,832
JBrowse link
Golgi vesicle budding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Golph3 golgi phosphoprotein 3 involved_in IEA
IBA
ISS
ISO
GO_REF:0000107
GO_REF:0000033
GO_REF:0000118
GO_REF:0000024
(PMID:19837035)
Ensembl
GO_Central
TreeGrafter
UniProt
RGD
PMID:19837035 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:61,348,030...61,376,051
Ensembl chr 2:61,348,030...61,376,049
JBrowse link
G Golph3l golgi phosphoprotein 3-like involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 2:183,151,941...183,183,094
Ensembl chr 2:183,153,301...183,183,083
JBrowse link
G Myo18a myosin XVIIIa involved_in ISO
IEA
(PMID:19837035)
GO_REF:0000107
RGD
Ensembl
PMID:19837035 GO_REF:0000107 NCBI chr10:62,654,218...62,755,465
Ensembl chr10:62,654,281...62,755,468
JBrowse link
G Prkci protein kinase C, iota IDA RGD PMID:12871960 RGD:724652 NCBI chr 2:112,321,919...112,382,305
Ensembl chr 2:112,321,929...112,382,352
JBrowse link
Golgi vesicle fusion to target membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkd2 NKD inhibitor of WNT signaling pathway 2 involved_in ISO (PMID:17553928) RGD PMID:17553928 NCBI chr 1:29,442,898...29,470,839
Ensembl chr 1:29,441,328...29,470,821
JBrowse link
G Rab12 RAB12, member RAS oncogene family involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 9:106,480,301...106,506,895
Ensembl chr 9:106,480,301...106,506,910
JBrowse link
G Rab13 RAB13, member RAS oncogene family involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 2:175,674,894...175,680,043
Ensembl chr 2:175,675,005...175,680,036
JBrowse link
G Rab27b RAB27B, member RAS oncogene family involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr18:63,597,554...63,794,124
Ensembl chr18:63,600,937...63,757,180
JBrowse link
G Rab8a RAB8A, member RAS oncogene family involved_in ISO
IBA
IEA
(PMID:17574030)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
RGD
GO_Central
TreeGrafter
Ensembl
PMID:17574030 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr16:17,654,027...17,675,385
Ensembl chr16:17,654,034...17,675,678
JBrowse link
G Rab8b RAB8B, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:67,458,921...67,536,466
Ensembl chr 8:67,458,923...67,536,384
JBrowse link
intralumenal vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rilp Rab interacting lysosomal protein involved_in ISO (PMID:17959629) RGD PMID:17959629 NCBI chr10:60,355,276...60,358,434
Ensembl chr10:60,355,278...60,358,781
JBrowse link
G Snx3 sorting nexin 3 involved_in ISO (PMID:18767904) RGD PMID:18767904 NCBI chr20:45,992,446...46,025,361
Ensembl chr20:45,992,720...46,025,379
JBrowse link
maintenance of granzyme B location in T cell secretory granule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srgn serglycin involved_in ISS
ISO
GO_REF:0000024
(MGI:3717516|PMID:16046402)
UniProt
RGD
PMID:16046402 GO_REF:0000024 MGI:3717516 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406
JBrowse link
maintenance of protease location in mast cell secretory granule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srgn serglycin involved_in ISS
ISO
GO_REF:0000024
(MGI:3762431|PMID:17010166)
UniProt
RGD
PMID:17010166 GO_REF:0000024 MGI:3762431 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406
JBrowse link
mast cell secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO MGI:1855968 (PMID:624833) RGD PMID:624833 NCBI chr17:86,241,384...86,443,501
Ensembl chr17:86,241,384...86,443,480
JBrowse link
G Srgn serglycin involved_in ISS
ISO
GO_REF:0000024
(MGI:3056870|PMID:15231821)
UniProt
RGD
PMID:15231821 GO_REF:0000024 MGI:3056870 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406
JBrowse link
melanosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 involved_in ISO
ISS
(PMID:29940187)
GO_REF:0000024
RGD
UniProt
PMID:29940187 GO_REF:0000024 NCBI chr 9:76,668,554...76,677,263
Ensembl chr 9:76,668,554...76,676,924
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 involved_in ISO
IBA
(PMID:23084991)
GO_REF:0000033
RGD
GO_Central
PMID:23084991 GO_REF:0000033 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268
JBrowse link
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 involved_in ISO
IBA
(PMID:23084991)
GO_REF:0000033
RGD
GO_Central
PMID:23084991 GO_REF:0000033 NCBI chr12:44,264,037...44,294,791
Ensembl chr12:44,264,037...44,294,632
JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in ISO (PMID:22511774), (PMID:23084991) RGD PMID:22511774 PMID:23084991 NCBI chr 1:4,946,193...4,961,003
Ensembl chr 1:4,945,036...4,960,934
JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in ISO (PMID:22511774), (PMID:23084991) RGD PMID:22511774 PMID:23084991 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924
JBrowse link
melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1m1 adaptor related protein complex 1 subunit mu 1 involved_in ISO
IEA
(PMID:19841138)
GO_REF:0000107
RGD
Ensembl
PMID:19841138 GO_REF:0000107 NCBI chr16:17,586,886...17,602,410
Ensembl chr16:17,584,730...17,602,403
JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 involved_in
acts_upstream_of_or_within
ISO (PMID:11452004), (PMID:19841138)
(PMID:9931340)
RGD PMID:9931340 PMID:11452004 PMID:19841138 NCBI chr 2:25,600,069...25,800,937
Ensembl chr 2:25,600,040...25,800,935
JBrowse link
G Apoe apolipoprotein E involved_in ISO
IEA
ISS
(PMID:26387950)
GO_REF:0000107
GO_REF:0000024
(MGI:6830356|PMID:26387950)
RGD
Ensembl
UniProt
PMID:26387950 GO_REF:0000024 GO_REF:0000107 MGI:6830356 NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932
JBrowse link
G Asip agouti signaling protein involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
GO_REF:0000107
GO_REF:0000033
GO_REF:0000118
MGI:1855937 (PMID:9548375)
Ensembl
GO_Central
TreeGrafter
RGD
PMID:9548375 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171
JBrowse link
G Bace2 beta-secretase 2 involved_in ISO (PMID:23754390)
(MGI:5495053|PMID:23754390)
RGD PMID:23754390 MGI:5495053 NCBI chr11:36,707,447...36,789,550
Ensembl chr11:36,707,458...36,789,546
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 acts_upstream_of_or_within ISO MGI:1857021 (PMID:15265785) RGD PMID:15265785 NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505
JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 acts_upstream_of_or_within ISO MGI:2449643 (PMID:11110696) RGD PMID:11110696 NCBI chr14:74,043,025...74,044,325
Ensembl chr14:74,043,015...74,044,531
JBrowse link
G Gpr143 G protein-coupled receptor 143 involved_in ISO
IBA
(PMID:19717472)
GO_REF:0000033
RGD
GO_Central
PMID:19717472 GO_REF:0000033 NCBI chr  X:22,002,914...22,027,720
Ensembl chr  X:22,002,914...22,027,715
JBrowse link
G Kif13a kinesin family member 13A involved_in ISO (PMID:19841138) RGD PMID:19841138 NCBI chr17:17,766,597...17,948,517
Ensembl chr17:17,766,597...17,943,615
JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO MGI:1855968|MGI:3620573 (PMID:16518687), (PMID:4634048) RGD PMID:4634048 PMID:16518687 NCBI chr17:86,241,384...86,443,501
Ensembl chr17:86,241,384...86,443,480
JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO
IBA
(PMID:29584722)
GO_REF:0000033
(MGI:6152906|PMID:29584722)
RGD
GO_Central
PMID:29584722 GO_REF:0000033 MGI:6152906 NCBI chr 9:66,563,747...66,657,873
Ensembl chr 9:66,563,727...66,657,868
JBrowse link
G Pmel premelanosome protein involved_in ISO
IBA
(PMID:11694580)
GO_REF:0000033
RGD
GO_Central
PMID:11694580 GO_REF:0000033 NCBI chr 7:1,138,202...1,148,735
Ensembl chr 7:1,138,586...1,148,746
JBrowse link
G Rab29 RAB29, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:43,307,757...43,313,420
Ensembl chr13:43,307,775...43,313,417
JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924
JBrowse link
G Shroom2 shroom family member 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:3710716|PMID:16987870)
UniProt
RGD
PMID:16987870 GO_REF:0000024 MGI:3710716 NCBI chr  X:21,812,469...21,983,724
Ensembl chr  X:21,812,469...21,984,153
JBrowse link
G Tyrp1 tyrosinase-related protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1855960 (PMID:9548375)
GO_Central
RGD
PMID:9548375 GO_REF:0000033 NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516
JBrowse link
multivesicular body assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab11a RAB11a, member RAS oncogene family involved_in ISO (PMID:15634213) RGD PMID:15634213 NCBI chr 8:65,223,698...65,246,461
Ensembl chr 8:65,222,949...65,246,525
JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in IEA
ISO
GO_REF:0000107
(MGI:5700294|PMID:21238931)
Ensembl
RGD
PMID:21238931 GO_REF:0000107 MGI:5700294 NCBI chr19:34,934,999...34,948,888
Ensembl chr19:34,934,961...34,948,887
JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B involved_in ISO (MGI:5700294|PMID:21238931) RGD PMID:21238931 MGI:5700294 NCBI chr13:22,907,105...22,932,200
Ensembl chr13:22,907,109...22,932,229
JBrowse link
multivesicular body organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab27a RAB27A, member RAS oncogene family involved_in ISO (PMID:23092844) RGD PMID:23092844 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829
JBrowse link
multivesicular body-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp3 charged multivesicular body protein 3 involved_in ISO (PMID:16554368) RGD PMID:16554368 NCBI chr 4:103,576,453...103,622,566
Ensembl chr 4:103,576,515...103,623,959
JBrowse link
negative regulation of cargo loading into COPII-coated vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Insig1 insulin induced gene 1 involved_in ISO (PMID:15899885) RGD PMID:15899885 NCBI chr 4:7,315,494...7,323,972
Ensembl chr 4:7,315,495...7,323,952
JBrowse link
G Sar1a secretion associated, Ras related GTPase 1A acts_upstream_of_or_within ISO (PMID:23580231) RGD PMID:23580231 NCBI chr20:29,623,529...29,635,935
Ensembl chr20:29,623,553...29,635,935
JBrowse link
negative regulation of intralumenal vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO
IEA
(PMID:26911690)
GO_REF:0000107
RGD
Ensembl
PMID:26911690 GO_REF:0000107 NCBI chr 1:48,688,651...49,882,520
Ensembl chr 1:48,690,556...49,882,555
JBrowse link
negative regulation of SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd27 ankyrin repeat domain 27 involved_in ISO (PMID:24856514) RGD PMID:24856514 NCBI chr 1:88,251,216...88,303,615
Ensembl chr 1:88,251,226...88,303,615
JBrowse link
G Prrt2 proline-rich transmembrane protein 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:6114881|PMID:29056747)
UniProt
Ensembl
RGD
PMID:29056747 GO_REF:0000024 GO_REF:0000107 MGI:6114881 NCBI chr 1:181,625,243...181,628,833
Ensembl chr 1:181,604,545...181,628,850
JBrowse link
G Stxbp1 syntaxin binding protein 1 involved_in TAS PMID:12093152 ParkinsonsUK-UCL PMID:12093152 RGD:730238 NCBI chr 3:16,076,725...16,138,431
Ensembl chr 3:16,076,391...16,138,369
JBrowse link
G Trim9 tripartite motif-containing 9 IDA RGD PMID:11524423 RGD:631246 NCBI chr 6:88,756,824...88,856,588
Ensembl chr 6:88,757,303...88,856,542
JBrowse link
negative regulation of vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coro1a coronin 1A acts_upstream_of_or_within ISO MGI:3778894 (PMID:24270184) RGD PMID:24270184 NCBI chr 1:181,295,561...181,300,566
Ensembl chr 1:181,295,562...181,300,534
JBrowse link
G Syt4 synaptotagmin 4 involved_in IDA PMID:20688915 RGD
ParkinsonsUK-UCL
PMID:18508778 PMID:20688915 RGD:7241021, RGD:11535104 NCBI chr18:23,036,973...23,046,380
Ensembl chr18:23,038,378...23,046,332
JBrowse link
G Tbc1d4 TBC1 domain family, member 4 IMP RGD PMID:21454690 RGD:7247577 NCBI chr15:78,256,030...78,434,168
Ensembl chr15:78,257,121...78,434,265
JBrowse link
phagolysosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coro1a coronin 1A involved_in ISO (PMID:12132654) RGD PMID:12132654 NCBI chr 1:181,295,561...181,300,566
Ensembl chr 1:181,295,562...181,300,534
JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:2155422 (PMID:12743369) RGD PMID:12743369 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G P2rx7 purinergic receptor P2X 7 acts_upstream_of_or_within ISO MGI:3606250 (PMID:11544318) RGD PMID:11544318 NCBI chr12:33,889,709...33,934,168
Ensembl chr12:33,879,745...33,934,619
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882
JBrowse link
G Srpx sushi-repeat-containing protein, X-linked involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000118
MGI:3706175 (PMID:19368996)
GO_REF:0000033
TreeGrafter
RGD
GO_Central
PMID:19368996 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:12,676,984...12,751,296
Ensembl chr  X:12,566,645...12,747,882
JBrowse link
phagolysosome assembly involved in apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab14 RAB14, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:18,501,953...18,523,253
Ensembl chr 3:18,501,963...18,523,172
JBrowse link
phagosome-lysosome docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (MGI:5698740|PMID:26450516) RGD PMID:26450516 MGI:5698740 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
JBrowse link
phagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ADP-ribosylation factor like GTPase 8B involved_in ISS
ISO
GO_REF:0000024
(PMID:21802320)
UniProt
RGD
PMID:21802320 GO_REF:0000024 NCBI chr 4:141,748,634...141,792,605
Ensembl chr 4:141,748,587...141,792,596
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (MGI:5698740|PMID:26450516) RGD PMID:26450516 MGI:5698740 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
JBrowse link
G Dnajc27 DnaJ heat shock protein family (Hsp40) member C27 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 6:27,068,713...27,098,449
Ensembl chr 6:27,068,686...27,098,449
JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO
IBA
(PMID:28779020)
GO_REF:0000033
(MGI:6103777|PMID:28779020)
RGD
GO_Central
PMID:28779020 GO_REF:0000033 MGI:6103777 NCBI chr 9:66,563,747...66,657,873
Ensembl chr 9:66,563,727...66,657,868
JBrowse link
G Pla2g5 phospholipase A2, group V involved_in ISS
ISO
GO_REF:0000024
(MGI:3841317|PMID:19342668)
UniProt
RGD
PMID:19342668 GO_REF:0000024 MGI:3841317 NCBI chr 5:151,041,339...151,109,433
Ensembl chr 5:151,041,340...151,062,658
JBrowse link
G Rab20 RAB20, member RAS oncogene family involved_in ISO (PMID:21255211) RGD PMID:21255211 NCBI chr16:78,019,337...78,043,529
Ensembl chr16:78,019,337...78,043,529
JBrowse link
G Rab29 RAB29, member RAS oncogene family involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr13:43,307,757...43,313,420
Ensembl chr13:43,307,775...43,313,417
JBrowse link
G Rab34 RAB34, member RAS oncogene family involved_in ISS
IBA
IEA
ISO
GO_REF:0000024
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
(MGI:5467668|PMID:23197834)
(PMID:21255211)
UniProt
GO_Central
TreeGrafter
Ensembl
RGD
PMID:21255211 PMID:23197834 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:5467668 NCBI chr10:63,083,319...63,087,538
Ensembl chr10:63,083,338...63,087,538
JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924
JBrowse link
G Rab39a RAB39A, member RAS oncogene family involved_in ISO
IBA
(PMID:21255211)
GO_REF:0000033
RGD
GO_Central
PMID:21255211 GO_REF:0000033 NCBI chr 8:54,088,246...54,105,867
Ensembl chr 8:54,088,129...54,106,483
JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO
IBA
IEA
ISS
(PMID:21255211)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000024
RGD
GO_Central
TreeGrafter
UniProt
PMID:21255211 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889
JBrowse link
G Rab7b Rab7b, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:43,121,168...43,147,581
Ensembl chr13:43,121,226...43,147,581
JBrowse link
G Syt7 synaptotagmin 7 involved_in ISS
ISO
GO_REF:0000024
(MGI:3690533|PMID:16982801)
UniProt
RGD
PMID:16982801 GO_REF:0000024 MGI:3690533 NCBI chr 1:207,031,359...207,093,787
Ensembl chr 1:207,031,592...207,089,026
JBrowse link
G Tmem175 transmembrane protein 175 involved_in ISS
ISO
GO_REF:0000024
(MGI:5693670|PMID:26317472)
UniProt
RGD
PMID:26317472 GO_REF:0000024 MGI:5693670 NCBI chr14:1,073,410...1,089,764
Ensembl chr14:1,073,523...1,089,819
JBrowse link
phagosome-lysosome fusion involved in apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO MGI:4377985 (PMID:26284655) RGD PMID:26284655 NCBI chr 3:109,007,658...109,072,904
Ensembl chr 3:109,008,135...109,072,911
JBrowse link
pigment granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2158305 (PMID:8758925)
Ensembl
RGD
PMID:8758925 GO_REF:0000107 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO MGI:1855968 (PMID:1278263) RGD PMID:1278263 NCBI chr17:86,241,384...86,443,501
Ensembl chr17:86,241,384...86,443,480
JBrowse link
platelet alpha granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nbeal2 neurobeachin-like 2 acts_upstream_of_or_within ISO MGI:4461705|MGI:5007262 (PMID:23861251), (PMID:23863626), (PMID:25258341) RGD PMID:23861251 PMID:23863626 PMID:25258341 NCBI chr 8:110,603,220...110,633,612
Ensembl chr 8:110,599,389...110,633,707
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated involved_in ISO (PMID:16123220)
(MGI:5645581|PMID:25947942)
RGD PMID:16123220 PMID:25947942 MGI:5645581 NCBI chr 1:134,223,967...134,247,232
Ensembl chr 1:134,223,949...134,246,970
JBrowse link
G Zfp385a zinc finger protein 385A acts_upstream_of_or_within ISO MGI:3510440 (PMID:11927637) RGD PMID:11927637 NCBI chr 7:134,448,914...134,475,548
Ensembl chr 7:134,448,921...134,475,548
JBrowse link
platelet dense granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 involved_in ISO (PMID:15163665) RGD PMID:15163665 NCBI chr 5:67,678,267...67,801,162
Ensembl chr 5:67,681,297...67,801,170
JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO (PMID:9931340) RGD PMID:9931340 NCBI chr 2:25,600,069...25,800,937
Ensembl chr 2:25,600,040...25,800,935
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 acts_upstream_of_or_within ISO MGI:1857021 (PMID:15265785) RGD PMID:15265785 NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505
JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000118
MGI:1856628 (PMID:1936982)
GO_REF:0000033
TreeGrafter
RGD
GO_Central
PMID:1936982 GO_REF:0000033 GO_REF:0000118 NCBI chr17:19,685,218...19,776,668
Ensembl chr17:19,685,215...19,776,661
JBrowse link
G Rab38 RAB38, member RAS oncogene family IMP RGD PMID:18983523 RGD:2324691 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924
JBrowse link
G Slc35d3 solute carrier family 35, member D3 involved_in ISO (MGI:3801266|PMID:17062724), (MGI:5444075|PMID:22611153) RGD PMID:17062724 PMID:22611153 MGI:3801266 MGI:5444075 NCBI chr 1:14,565,482...14,573,581
Ensembl chr 1:14,569,687...14,573,159
JBrowse link
positive regulation of endosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Synj1 synaptojanin 1 involved_in ISO
IEA
(PMID:22511594)
GO_REF:0000107
RGD
Ensembl
PMID:22511594 GO_REF:0000107 NCBI chr11:30,192,629...30,269,447
Ensembl chr11:30,192,629...30,269,220
JBrowse link
positive regulation of extracellular exosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdcd6ip programmed cell death 6 interacting protein involved_in ISO (PMID:22660413) RGD PMID:22660413 NCBI chr 8:113,590,998...113,646,795
Ensembl chr 8:113,590,998...113,646,773
JBrowse link
G Sdc1 syndecan 1 involved_in ISO (PMID:22660413) RGD PMID:22660413 NCBI chr 6:31,562,799...31,585,267
Ensembl chr 6:31,562,739...31,585,264
JBrowse link
G Sdc4 syndecan 4 involved_in ISO (PMID:22660413) RGD PMID:22660413 NCBI chr 3:153,154,888...153,173,576
Ensembl chr 3:153,154,896...153,173,580
JBrowse link
G Sdcbp syndecan binding protein involved_in ISO (PMID:22660413) RGD PMID:22660413 NCBI chr 5:19,473,499...19,517,188
Ensembl chr 5:19,489,961...19,527,572
JBrowse link
positive regulation of secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcg1 ATP binding cassette subfamily G member 1 IMP RGD PMID:29540530 RGD:41404656 NCBI chr20:9,126,687...9,182,948
Ensembl chr20:9,126,687...9,182,948
JBrowse link
G Osbp oxysterol binding protein IMP RGD PMID:29540530 RGD:41404656 NCBI chr 1:208,888,697...208,918,511
Ensembl chr 1:208,887,895...208,918,506
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 IMP RGD PMID:15039777 RGD:10045958 NCBI chr 7:9,842,574...9,852,332
Ensembl chr 7:9,842,574...9,852,397
JBrowse link
positive regulation of SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snca synuclein alpha involved_in ISO
IEA
(PMID:20798282)
GO_REF:0000107
RGD
Ensembl
PMID:20798282 GO_REF:0000107 NCBI chr 4:89,696,420...89,797,240
Ensembl chr 4:89,696,420...89,796,262
JBrowse link
positive regulation of synaptic vesicle fusion to presynaptic active zone membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rims1 regulating synaptic membrane exocytosis 1 involved_in NAS PMID:9252191 UniProt PMID:9252191 RGD:633897 NCBI chr 9:24,696,959...25,196,404
Ensembl chr 9:24,698,854...25,196,631
JBrowse link
positive regulation of vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 involved_in ISO
IEA
(PMID:2138016)
GO_REF:0000118
GO_REF:0000107
RGD
TreeGrafter
Ensembl
PMID:2138016 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:217,861,175...217,877,205
Ensembl chr 1:217,861,175...217,877,343
JBrowse link
G Anxa2 annexin A2 involved_in ISO (PMID:2138016) RGD PMID:2138016 NCBI chr 8:70,105,268...70,141,663
Ensembl chr 8:70,105,253...70,141,658
JBrowse link
G C2cd5 C2 calcium-dependent domain containing 5 involved_in ISO
IBA
(PMID:21907143)
GO_REF:0000033
(MGI:5292403|PMID:21907143)
RGD
GO_Central
PMID:21907143 GO_REF:0000033 MGI:5292403 NCBI chr 4:175,969,544...176,055,597
Ensembl chr 4:175,969,545...176,055,558
JBrowse link
G Doc2b double C2 domain beta involved_in IDA PMID:18596155 UniProt PMID:18596155 RGD:8554556 NCBI chr10:60,628,029...60,653,267
Ensembl chr10:60,628,029...60,653,267
JBrowse link
G Kif5b kinesin family member 5B IMP RGD PMID:24203699 RGD:11059541 NCBI chr17:51,489,904...51,527,508
Ensembl chr17:51,489,944...51,527,508
JBrowse link
G Pla2g4a phospholipase A2 group IVA IMP RGD PMID:17148545 RGD:1642447 NCBI chr13:61,877,818...62,022,261
Ensembl chr13:61,877,813...62,022,266
JBrowse link
G Syt1 synaptotagmin 1 involved_in IDA PMID:20688915 RGD
ParkinsonsUK-UCL
PMID:18508778 PMID:20688915 RGD:7241021, RGD:11535104 NCBI chr 7:43,813,204...44,358,020
Ensembl chr 7:43,815,785...44,357,803
JBrowse link
G Syt3 synaptotagmin 3 IDA RGD PMID:18508778 RGD:7241021 NCBI chr 1:94,880,835...94,895,518
Ensembl chr 1:94,881,247...94,895,246
JBrowse link
proacrosomal vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIAA0319l KIAA0319 like acts_upstream_of_or_within ISO MGI:6111779 (PMID:29991750) RGD PMID:29991750 NCBI chr 5:139,047,847...139,140,709
Ensembl chr 5:139,046,143...139,140,715
JBrowse link
G Sox30 SRY-box transcription factor 30 involved_in ISO (MGI:6191912|PMID:29866902) RGD PMID:29866902 MGI:6191912 NCBI chr10:30,417,499...30,446,441
Ensembl chr10:30,418,473...30,446,453
JBrowse link
regulation of calcium-dependent activation of synaptic vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1b calcium voltage-gated channel subunit alpha1 B involved_in IDA
EXP
PMID:7832825 SynGO PMID:7832825 PMID:7832825 RGD:13792530, RGD:13792530 NCBI chr 3:7,380,892...7,546,104
Ensembl chr 3:7,380,922...7,546,091
JBrowse link
G Erc1 ELKS/RAB6-interacting/CAST family member 1 involved_in ISO (PMID:25209271) RGD PMID:25209271 NCBI chr 4:152,763,664...153,055,724
Ensembl chr 4:152,767,419...153,055,639
JBrowse link
G Erc2 ELKS/RAB6-interacting/CAST family member 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:25209271)
Ensembl
RGD
PMID:25209271 GO_REF:0000107 NCBI chr16:2,812,712...3,673,624
Ensembl chr16:2,848,620...3,670,776
JBrowse link
G Prrt2 proline-rich transmembrane protein 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:27052163)
Ensembl
RGD
PMID:27052163 GO_REF:0000107 NCBI chr 1:181,625,243...181,628,833
Ensembl chr 1:181,604,545...181,628,850
JBrowse link
G Rimbp2 RIMS binding protein 2 involved_in ISO (PMID:27671655) RGD PMID:27671655 NCBI chr12:27,747,615...27,946,256
Ensembl chr12:27,747,980...27,956,763
JBrowse link
G Rims1 regulating synaptic membrane exocytosis 1 involved_in ISO (PMID:21241895) RGD PMID:21241895 NCBI chr 9:24,696,959...25,196,404
Ensembl chr 9:24,698,854...25,196,631
JBrowse link
G Rims2 regulating synaptic membrane exocytosis 2 involved_in ISO (PMID:21241895) RGD PMID:21241895 NCBI chr 7:70,248,104...70,759,134
Ensembl chr 7:70,243,872...70,757,491
JBrowse link
regulation of cargo loading into COPII-coated vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sar1a secretion associated, Ras related GTPase 1A acts_upstream_of_or_within ISO (PMID:19966784) RGD PMID:19966784 NCBI chr20:29,623,529...29,635,935
Ensembl chr20:29,623,553...29,635,935
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:4440619|MGI:4440621 (PMID:19966784) RGD PMID:19966784 NCBI chr 2:218,562,670...218,632,753
Ensembl chr 2:218,562,676...218,632,699
JBrowse link
regulation of COPII vesicle coating term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mapk15 mitogen-activated protein kinase 15 involved_in ISO
IEA
ISS
(PMID:24618899)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:24618899 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:107,694,907...107,714,640
Ensembl chr 7:107,694,964...107,714,645
JBrowse link
G Ppa1 inorganic pyrophosphatase 1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr20:29,590,733...29,617,711
Ensembl chr20:29,590,707...29,619,215
JBrowse link
G Preb prolactin regulatory element binding involved_in IEA
ISO
IBA
GO_REF:0000104
(PMID:32358066)
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:32358066 GO_REF:0000033 GO_REF:0000104 NCBI chr 6:25,418,805...25,422,594
Ensembl chr 6:25,418,776...25,422,590
JBrowse link
G Sar1a secretion associated, Ras related GTPase 1A involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr20:29,623,529...29,635,935
Ensembl chr20:29,623,553...29,635,935
JBrowse link
G Sar1b secretion associated, Ras related GTPase 1B involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr10:36,024,415...36,054,069
Ensembl chr10:36,024,382...36,054,066
JBrowse link
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor involved_in ISO (PMID:17005010) RGD PMID:17005010 NCBI chr 3:9,229,687...9,264,837
Ensembl chr 3:9,229,687...9,264,273
JBrowse link
regulation of endosomal vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sphk1 sphingosine kinase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5896700|PMID:27806293)
UniProt
RGD
PMID:27806293 GO_REF:0000024 MGI:5896700 NCBI chr10:101,758,567...101,764,240
Ensembl chr10:101,758,711...101,764,240
JBrowse link
regulation of endosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:25588840) RGD PMID:25588840 NCBI chr19:13,405,482...13,440,384
Ensembl chr19:13,405,501...13,440,384
JBrowse link
regulation of extracellular exosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdcd6ip programmed cell death 6 interacting protein involved_in ISO (PMID:24105262) RGD PMID:24105262 NCBI chr 8:113,590,998...113,646,795
Ensembl chr 8:113,590,998...113,646,773
JBrowse link
G Stam signal transducing adaptor molecule involved_in ISO (PMID:24105262) RGD PMID:24105262 NCBI chr17:77,120,235...77,166,173
Ensembl chr17:77,120,158...77,166,467
JBrowse link
G Tsg101 tumor susceptibility 101 involved_in ISO
IEA
(PMID:24105262)
GO_REF:0000107
RGD
Ensembl
PMID:24105262 GO_REF:0000107 NCBI chr 1:97,412,689...97,442,589
Ensembl chr 1:97,410,848...97,442,554
JBrowse link
regulation of melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in ISO (MGI:3813974|PMID:18697795) RGD PMID:18697795 MGI:3813974 NCBI chr  X:22,002,914...22,027,720
Ensembl chr  X:22,002,914...22,027,715
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) RGD PMID:24769727 MGI:5574413 NCBI chr 3:29,214,581...29,344,890
Ensembl chr 3:29,218,301...29,345,157
JBrowse link
regulation of SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Septin8 septin 8 involved_in IDA PMID:19196426 UniProt PMID:19196426 RGD:13702278 NCBI chr10:37,684,649...37,713,704
Ensembl chr10:37,684,639...37,713,174
JBrowse link
G Stxbp6 syntaxin binding protein 6 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:61,920,756...62,157,405
Ensembl chr 6:61,920,756...62,158,024
JBrowse link
regulation of synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc2a4 solute carrier family 2 member 4 involved_in IMP
IDA
PMID:28111082 SynGO PMID:28111082 PMID:28111082 RGD:13702195, RGD:13702195 NCBI chr10:54,666,015...54,671,581
Ensembl chr10:54,666,015...54,671,565
JBrowse link
regulation of synaptic vesicle fusion to presynaptic active zone membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cplx1 complexin 1 involved_in ISO (PMID:11163241) RGD PMID:11163241 NCBI chr14:1,184,677...1,216,392 JBrowse link
G Cplx2 complexin 2 involved_in ISO (PMID:11163241) RGD PMID:11163241 NCBI chr17:10,219,577...10,292,835
Ensembl chr17:10,222,347...10,293,855
JBrowse link
G Cplx3 complexin 3 involved_in ISO (PMID:27239031) RGD PMID:27239031 NCBI chr 8:58,003,535...58,010,297
Ensembl chr 8:58,003,535...58,010,297
JBrowse link
G Grik5 glutamate ionotropic receptor kainate type subunit 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2668206 (PMID:12533602)
Ensembl
RGD
PMID:12533602 GO_REF:0000107 NCBI chr 1:80,605,878...80,667,896
Ensembl chr 1:80,605,892...80,667,125
JBrowse link
G Rab3a RAB3A, member RAS oncogene family involved_in
acts_upstream_of_or_within
ISS
ISO
IBA
IEA
GO_REF:0000024
MGI:3762127 (PMID:11359932)
(PMID:9194562)
GO_REF:0000033
GO_REF:0000107
ParkinsonsUK-UCL
RGD
GO_Central
Ensembl
PMID:9194562 PMID:11359932 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr16:18,684,185...18,688,297
Ensembl chr16:18,684,188...18,688,336
JBrowse link
G Vamp1 vesicle-associated membrane protein 1 involved_in ISO (PMID:21282288) RGD PMID:21282288 NCBI chr 4:158,012,634...158,019,350
Ensembl chr 4:158,012,663...158,019,349
JBrowse link
regulation of vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slamf1 signaling lymphocytic activation molecule family member 1 acts_upstream_of_or_within ISO MGI:3044919 (PMID:22493499) RGD PMID:22493499 NCBI chr13:84,270,316...84,305,497
Ensembl chr13:84,270,316...84,305,497
JBrowse link
G Stxbp1 syntaxin binding protein 1 IDA RGD PMID:24532794 RGD:12903988 NCBI chr 3:16,076,725...16,138,431
Ensembl chr 3:16,076,391...16,138,369
JBrowse link
G Syt4 synaptotagmin 4 involved_in IMP
ISO
PMID:20303854
(MGI:3836866|PMID:19136969)
RGD PMID:19136969 PMID:20303854 MGI:3836866, RGD:11541109 NCBI chr18:23,036,973...23,046,380
Ensembl chr18:23,038,378...23,046,332
JBrowse link
secretory granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Syt4 synaptotagmin 4 involved_in IMP PMID:16618809 ParkinsonsUK-UCL PMID:16618809 RGD:11535113 NCBI chr18:23,036,973...23,046,380
Ensembl chr18:23,038,378...23,046,332
JBrowse link
secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 acts_upstream_of_or_within ISO (PMID:18511498) RGD PMID:18511498 NCBI chr 4:84,482,512...84,494,690
Ensembl chr 4:84,482,512...84,494,690
JBrowse link
G Creb1 cAMP responsive element binding protein 1 acts_upstream_of_or_within ISO MGI:4999627 (PMID:21408140) RGD PMID:21408140 NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816
JBrowse link
G Kcne1 potassium voltage-gated channel subfamily E regulatory subunit 1 involved_in ISO MGI:1857442 (PMID:11889581) RGD PMID:11889581 NCBI chr11:31,580,951...31,594,116
Ensembl chr11:31,580,742...31,593,901
JBrowse link
G Mta1 metastasis associated 1 involved_in IDA PMID:10933808 UniProt PMID:10933808 RGD:8554658 NCBI chr 6:132,178,608...132,217,641
Ensembl chr 6:132,178,853...132,217,641
JBrowse link
G Serpine2 serpin family E member 2 acts_upstream_of_or_within
involved_in
IDA
ISO
IEA
(PMID:16319172)
GO_REF:0000107
RGD
Ensembl
PMID:16319172 PMID:16319172 GO_REF:0000107, RGD:2317924 NCBI chr 9:81,124,746...81,188,866
Ensembl chr 9:81,124,804...81,188,826
JBrowse link
G Srgn serglycin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406
JBrowse link
SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cltrn collectrin, amino acid transport regulator involved_in ISO
IEA
(PMID:16330323)
GO_REF:0000107
RGD
Ensembl
PMID:16330323 GO_REF:0000107 NCBI chr  X:30,361,967...30,395,264
Ensembl chr  X:30,361,967...30,395,349
JBrowse link
G Snap25 synaptosome associated protein 25 involved_in IMP PMID:9671503
PMID:12680753
CAFA PMID:9671503 PMID:12680753 RGD:12793053, RGD:12793015 NCBI chr 3:124,041,898...124,123,761
Ensembl chr 3:124,041,898...124,123,760
JBrowse link
G Snca synuclein alpha involved_in ISO
IEA
(PMID:20798282)
GO_REF:0000107
(MGI:5608839|PMID:25246573)
RGD
Ensembl
PMID:20798282 PMID:25246573 GO_REF:0000107 MGI:5608839 NCBI chr 4:89,696,420...89,797,240
Ensembl chr 4:89,696,420...89,796,262
JBrowse link
G Stx1a syntaxin 1A involved_in IMP PMID:9671503
PMID:12680753
CAFA PMID:9671503 PMID:12680753 RGD:12793053, RGD:12793015 NCBI chr12:21,641,971...21,670,022
Ensembl chr12:21,641,969...21,669,930
JBrowse link
G Stx4 syntaxin 4 involved_in ISO (MGI:5567905|PMID:21151919) RGD PMID:21151919 MGI:5567905 NCBI chr 1:182,451,108...182,459,701
Ensembl chr 1:182,451,117...182,459,979
JBrowse link
G Stxbp1 syntaxin binding protein 1 involved_in ISO (PMID:23091057) RGD PMID:23091057 NCBI chr 3:16,076,725...16,138,431
Ensembl chr 3:16,076,391...16,138,369
JBrowse link
G Stxbp6 syntaxin binding protein 6 acts_upstream_of ISS
ISO
GO_REF:0000024
(PMID:12145319)
ParkinsonsUK-UCL
RGD
PMID:12145319 GO_REF:0000024 NCBI chr 6:61,920,756...62,157,405
Ensembl chr 6:61,920,756...62,158,024
JBrowse link
G Uvrag UV radiation resistance associated involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:24550300)
GO_Central
RGD
PMID:24550300 GO_REF:0000033 NCBI chr 1:153,185,356...153,442,200
Ensembl chr 1:153,185,395...153,442,136
JBrowse link
G Vamp1 vesicle-associated membrane protein 1 involved_in ISO
IBA
IEA
(MGI:5567905|PMID:21151919)
GO_REF:0000033
GO_REF:0000118
RGD
GO_Central
TreeGrafter
PMID:21151919 GO_REF:0000033 GO_REF:0000118 MGI:5567905 NCBI chr 4:158,012,634...158,019,350
Ensembl chr 4:158,012,663...158,019,349
JBrowse link
G Vamp2 vesicle-associated membrane protein 2 involved_in IMP
IBA
IEA
PMID:9671503
GO_REF:0000033
GO_REF:0000118
PMID:12680753
GO_Central
TreeGrafter
PMID:9671503 PMID:12680753 GO_REF:0000033 GO_REF:0000118, RGD:12793053, RGD:12793015 NCBI chr10:53,793,581...53,797,815
Ensembl chr10:53,793,923...53,797,809
JBrowse link
G Vamp3 vesicle-associated membrane protein 3 involved_in ISO
IBA
IEA
(MGI:5567905|PMID:21151919)
GO_REF:0000033
GO_REF:0000118
RGD
GO_Central
TreeGrafter
PMID:21151919 GO_REF:0000033 GO_REF:0000118 MGI:5567905 NCBI chr 5:161,498,109...161,508,704
Ensembl chr 5:161,498,109...161,508,751
JBrowse link
G Vamp4 vesicle-associated membrane protein 4 involved_in ISO
IBA
(PMID:21151919)
GO_REF:0000033
RGD
GO_Central
PMID:21151919 GO_REF:0000033 NCBI chr13:74,919,872...74,942,791
Ensembl chr13:74,919,880...74,933,686
JBrowse link
G Vamp7 vesicle-associated membrane protein 7 involved_in ISO (MGI:5567905|PMID:21151919) RGD PMID:21151919 MGI:5567905 NCBI chr12:16,728,486...16,764,261
Ensembl chr12:16,728,524...16,764,097
JBrowse link
G Vamp8 vesicle-associated membrane protein 8 involved_in ISO
IEA
IBA
(MGI:5567905|PMID:21151919)
GO_REF:0000118
GO_REF:0000033
RGD
TreeGrafter
GO_Central
PMID:21151919 GO_REF:0000033 GO_REF:0000118 MGI:5567905 NCBI chr 4:104,442,383...104,452,884
Ensembl chr 4:104,442,393...104,452,897
JBrowse link
synaptic vesicle budding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arf1 ADP-ribosylation factor 1 IMP RGD PMID:9590176 RGD:9684955 NCBI chr10:43,997,983...44,014,461
Ensembl chr10:43,997,986...44,014,434
JBrowse link
synaptic vesicle budding from endosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 involved_in IDA
IMP
PMID:22539861 SynGO PMID:22539861 PMID:22539861 RGD:12050120, RGD:12050120 NCBI chr19:37,744,633...37,831,134
Ensembl chr19:37,744,633...37,829,167
JBrowse link
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 involved_in ISO (PMID:20203623) RGD PMID:20203623 NCBI chr  X:30,572,746...30,598,961
Ensembl chr  X:30,572,751...30,597,262
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in IDA
ISO
IBA
IMP
PMID:22539861
(PMID:11588176)
GO_REF:0000033
RGD
GO_Central
PMID:11588176 PMID:22539861 PMID:22539861 GO_REF:0000033, RGD:12050120, RGD:12050120 NCBI chr 7:8,970,249...9,005,651
Ensembl chr 7:8,970,291...9,005,643
JBrowse link
G Btbd8 BTB domain containing 8 involved_in ISO (PMID:29262337) RGD PMID:29262337 NCBI chr14:2,265,187...2,338,426
Ensembl chr14:2,266,454...2,334,393
JBrowse link
synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnm1 dynamin 1 involved_in ISO
IBA
IEA
UniProtKB:Q8BZ98 (MGI:5285027|PMID:21689597)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:21689597 GO_REF:0000033 GO_REF:0000107 MGI:5285027 NCBI chr 3:15,604,782...15,648,654
Ensembl chr 3:15,604,784...15,648,538
JBrowse link
G Dnm2 dynamin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:19,978,313...20,060,162
Ensembl chr 8:19,978,400...20,060,157
JBrowse link
G Dnm3 dynamin 3 involved_in ISO
IBA
UniProtKB:P39053 (MGI:5285027|PMID:21689597)
GO_REF:0000033
RGD
GO_Central
PMID:21689597 GO_REF:0000033 MGI:5285027 NCBI chr13:74,359,043...74,838,135
Ensembl chr13:74,359,213...74,838,108
JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 involved_in IC PMID:21832070 SynGO PMID:21832070 RGD:9685531 NCBI chr 5:124,045,865...124,146,221
Ensembl chr 5:124,045,926...124,146,221
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 1:144,056,415...144,138,045
Ensembl chr 1:144,056,721...144,137,557
JBrowse link
G Snap91 synaptosome associated protein 91 involved_in ISO
IBA
IEA
(MGI:5707086|PMID:26412491)
GO_REF:0000033
GO_REF:0000118
RGD
GO_Central
TreeGrafter
PMID:26412491 GO_REF:0000033 GO_REF:0000118 MGI:5707086 NCBI chr 8:87,738,056...87,852,690
Ensembl chr 8:87,738,824...87,852,367
JBrowse link
synaptic vesicle coating term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cltb clathrin, light chain B involved_in NAS PMID:3563513 UniProt PMID:3563513 RGD:70686 NCBI chr17:10,001,512...10,019,201
Ensembl chr17:10,001,513...10,019,169
JBrowse link
synaptic vesicle fusion to presynaptic active zone membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC103690878 syntaxin-3-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:73,695,215...73,696,108
Ensembl chr  X:73,695,215...73,696,108
JBrowse link
G Prrt2 proline-rich transmembrane protein 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:5792766|PMID:27052163)
UniProt
Ensembl
RGD
PMID:27052163 GO_REF:0000024 GO_REF:0000107 MGI:5792766 NCBI chr 1:181,625,243...181,628,833
Ensembl chr 1:181,604,545...181,628,850
JBrowse link
G Snap23 synaptosome associated protein 23 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:107,514,088...107,546,177
Ensembl chr 3:107,514,131...107,544,320
JBrowse link
G Snap25 synaptosome associated protein 25 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 3:124,041,898...124,123,761
Ensembl chr 3:124,041,898...124,123,760
JBrowse link
G Snap29 synaptosome associated protein 29 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr11:83,578,479...83,608,953
Ensembl chr11:83,578,489...83,608,958
JBrowse link
G Snap47 synaptosome associated protein 47 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr10:44,192,886...44,234,435
Ensembl chr10:44,191,218...44,234,424
JBrowse link
G Snapin SNAP-associated protein acts_upstream_of_or_within ISO MGI:3608768 (PMID:19217378) RGD PMID:19217378 NCBI chr 2:175,971,575...175,974,164
Ensembl chr 2:175,971,257...175,974,231
JBrowse link
G Stx11 syntaxin 11 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:7,293,427...7,320,060
Ensembl chr 1:7,289,976...7,320,164
JBrowse link
G Stx19 syntaxin 19 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr11:172,855...178,053
Ensembl chr11:171,395...179,191
JBrowse link
G Stx1a syntaxin 1A involved_in IGI
IBA
IEA
PMID:18703708
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
PMID:18703708 GO_REF:0000033 GO_REF:0000118, RGD:11535099 NCBI chr12:21,641,971...21,670,022
Ensembl chr12:21,641,969...21,669,930
JBrowse link
G Stx1b syntaxin 1B involved_in IEA
ISO
GO_REF:0000107
(MGI:3803800|PMID:18703708), (PMID:24587181)
Ensembl
RGD
PMID:18703708 PMID:24587181 GO_REF:0000107 MGI:3803800 NCBI chr 1:182,415,544...182,434,385
Ensembl chr 1:182,415,546...182,441,280
JBrowse link
G Stx2 syntaxin 2 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr12:27,678,744...27,714,751
Ensembl chr12:27,689,819...27,714,751
JBrowse link
G Stx3 syntaxin 3 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 1:208,617,018...208,686,240
Ensembl chr 1:208,639,115...208,685,805
JBrowse link
G Stx4 syntaxin 4 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 1:182,451,108...182,459,701
Ensembl chr 1:182,451,117...182,459,979
JBrowse link
synaptic vesicle lumen acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap1 ATPase H+ transporting accessory protein 1 involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr  X:152,079,954...152,087,034
Ensembl chr  X:152,079,865...152,087,034
JBrowse link
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:28793259)
Ensembl
RGD
PMID:28793259 GO_REF:0000107 NCBI chr  X:10,183,983...10,210,948
Ensembl chr  X:10,183,068...10,210,918
JBrowse link
G Atp6v0a1 ATPase H+ transporting V0 subunit a1 involved_in IEA
ISO
GO_REF:0000107
(PMID:28793259)
Ensembl
RGD
PMID:28793259 GO_REF:0000107 NCBI chr10:85,935,802...85,989,901
Ensembl chr10:85,935,854...85,989,895
JBrowse link
G Atp6v0a4 ATPase H+ transporting V0 subunit a4 involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr 4:66,760,163...66,842,126
Ensembl chr 4:66,760,159...66,842,110
JBrowse link
G Atp6v0c ATPase H+ transporting V0 subunit C involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr10:13,196,204...13,202,580
Ensembl chr10:13,196,204...13,201,500
JBrowse link
G Atp6v0d1 ATPase H+ transporting V0 subunit D1 involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr19:33,403,352...33,447,357
Ensembl chr19:33,403,355...33,447,450
JBrowse link
G Atp6v0e2 ATPase, H+ transporting V0 subunit e2 involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr 4:77,484,868...77,488,016
Ensembl chr 4:77,482,226...77,488,777
JBrowse link
G Atp6v1a ATPase H+ transporting V1 subunit A involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr11:56,561,444...56,614,694
Ensembl chr11:56,560,974...56,614,694
JBrowse link
G Atp6v1b1 ATPase H+ transporting V1 subunit B1 involved_in IC
ISO
GO_REF:0000111
(PMID:28793259)
SynGO
RGD
PMID:28793259 GO_REF:0000111 NCBI chr 4:116,223,799...116,242,475
Ensembl chr 4:116,223,799...116,242,475
JBrowse link
G Atp6v1b2 ATPase H+ transporting V1 subunit B2 involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr16:20,617,515...20,641,651
Ensembl chr16:20,617,518...20,641,745
JBrowse link
G Atp6v1c1 ATPase H+ transporting V1 subunit C1 involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr 7:69,834,464...69,872,278
Ensembl chr 7:69,834,463...69,872,278
JBrowse link
G Atp6v1d ATPase H+ transporting V1 subunit D involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr 6:97,656,725...97,672,295
Ensembl chr 6:97,656,576...97,672,303
JBrowse link
G Atp6v1e1 ATPase H+ transporting V1 subunit E1 involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr 4:154,022,358...154,044,486
Ensembl chr 4:154,022,358...154,044,584
JBrowse link
G Atp6v1f ATPase H+ transporting V1 subunit F involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr 4:58,067,666...58,070,628 JBrowse link
G Atp6v1g1 ATPase H+ transporting V1 subunit G1 involved_in IBA
ISO
GO_REF:0000033
(PMID:28793259)
GO_Central
RGD
PMID:28793259 GO_REF:0000033 NCBI chr 5:76,961,462...76,967,642
Ensembl chr 5:76,961,499...76,969,463
JBrowse link
G Atp6v1g1l1 ATPase H+ transporting V1 subunit G1 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:28,663,974...28,664,273
Ensembl chr10:28,663,974...28,664,273
JBrowse link
G Atp6v1g2 ATPase H+ transporting V1 subunit G2 involved_in IBA
ISO
GO_REF:0000033
(PMID:28793259)
GO_Central
RGD
PMID:28793259 GO_REF:0000033 NCBI chr20:3,587,681...3,591,309
Ensembl chr20:3,587,686...3,590,481
JBrowse link
G Atp6v1g3 ATPase H+ transporting V1 subunit G3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:49,800,256...49,825,247
Ensembl chr13:49,794,222...49,825,247
JBrowse link
G Atp6v1h ATPase H+ transporting V1 subunit H involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr 5:14,379,029...14,484,703
Ensembl chr 5:14,378,257...14,537,962
JBrowse link
G Clcn3 chloride voltage-gated channel 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:11182090)
MGI:2447864 (PMID:21378974)
Ensembl
RGD
PMID:11182090 PMID:21378974 GO_REF:0000107 NCBI chr16:29,127,152...29,200,133
Ensembl chr16:29,127,419...29,200,119
JBrowse link
G Slc17a7 solute carrier family 17 member 7 acts_upstream_of_or_within ISO MGI:3051945 (PMID:19169251) RGD PMID:19169251 NCBI chr 1:95,649,709...95,661,591
Ensembl chr 1:95,649,745...95,661,588
JBrowse link
synaptic vesicle maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlg4 discs large MAGUK scaffold protein 4 involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
GO_REF:0000024
MGI:1915336 (PMID:15603741)
GO_REF:0000107
BHF-UCL
RGD
Ensembl
PMID:15603741 GO_REF:0000024 GO_REF:0000107 NCBI chr10:54,740,700...54,769,097
Ensembl chr10:54,739,470...54,767,153
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5559661|PMID:22851330)
GO_REF:0000107
Alzheimers_University_of_Toronto
RGD
Ensembl
PMID:22851330 GO_REF:0000024 GO_REF:0000107 MGI:5559661 NCBI chr 1:144,056,415...144,138,045
Ensembl chr 1:144,056,721...144,137,557
JBrowse link
G Rab3a RAB3A, member RAS oncogene family involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3762127 (PMID:11359932)
Ensembl
RGD
PMID:11359932 GO_REF:0000107 NCBI chr16:18,684,185...18,688,297
Ensembl chr16:18,684,188...18,688,336
JBrowse link
G Snapin SNAP-associated protein acts_upstream_of_or_within ISO MGI:3608768 (PMID:19217378) RGD PMID:19217378 NCBI chr 2:175,971,575...175,974,164
Ensembl chr 2:175,971,257...175,974,231
JBrowse link
G Stxbp1 syntaxin binding protein 1 acts_upstream_of_or_within ISO MGI:2183278 (PMID:15145078) RGD PMID:15145078 NCBI chr 3:16,076,725...16,138,431
Ensembl chr 3:16,076,391...16,138,369
JBrowse link
G Unc13a unc-13 homolog A involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000118
MGI:2449468 (PMID:10440375)
GO_REF:0000033
TreeGrafter
RGD
GO_Central
PMID:10440375 GO_REF:0000033 GO_REF:0000118 NCBI chr16:18,333,910...18,381,813
Ensembl chr16:18,336,229...18,381,872
JBrowse link
G Unc13b unc-13 homolog B involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 5:57,288,999...57,504,110
Ensembl chr 5:57,289,227...57,502,926
JBrowse link
G Unc13c unc-13 homolog C involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 8:74,247,026...74,697,629
Ensembl chr 8:74,247,899...74,673,223
JBrowse link
G Zdhhc15 zinc finger DHHC-type palmitoyltransferase 15 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1277959 (PMID:15603741)
GO_Central
RGD
PMID:15603741 GO_REF:0000033 NCBI chr  X:69,568,086...69,701,756
Ensembl chr  X:69,574,124...69,701,756
JBrowse link
G Zdhhc20 zinc finger DHHC-type palmitoyltransferase 20 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:31,980,057...32,039,006
Ensembl chr15:31,983,155...32,038,989
JBrowse link
synaptic vesicle to endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stx12 syntaxin 12 involved_in IDA
IMP
PMID:17004320 SynGO PMID:17004320 PMID:17004320 RGD:12050136, RGD:12050136 NCBI chr 5:145,062,978...145,092,423
Ensembl chr 5:145,063,587...145,092,377
JBrowse link
G Stx6 syntaxin 6 involved_in IDA
IMP
PMID:17004320 SynGO PMID:17004320 PMID:17004320 RGD:12050136, RGD:12050136 NCBI chr13:67,332,329...67,378,580
Ensembl chr13:67,332,314...67,378,576
JBrowse link
G Stx7 syntaxin 7 involved_in ISO (PMID:34408265) RGD PMID:34408265 NCBI chr 1:21,197,075...21,237,320
Ensembl chr 1:21,197,075...21,237,279
JBrowse link
G Vamp4 vesicle-associated membrane protein 4 involved_in IDA
IEP
IMP
PMID:17004320
PMID:26607000
SynGO PMID:17004320 PMID:26607000 PMID:17004320 PMID:26607000 PMID:26607000 RGD:12050136, RGD:11058152, RGD:12050136, RGD:11058152, RGD:11058152 NCBI chr13:74,919,872...74,942,791
Ensembl chr13:74,919,880...74,933,686
JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A involved_in IMP
IDA
PMID:17004320 SynGO PMID:17004320 PMID:17004320 RGD:12050136, RGD:12050136 NCBI chr 1:254,356,343...254,661,854
Ensembl chr 1:254,356,429...254,661,852
JBrowse link
T cell secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srgn serglycin involved_in ISS
ISO
GO_REF:0000024
(MGI:3717516|PMID:16046402)
UniProt
RGD
PMID:16046402 GO_REF:0000024 MGI:3717516 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406
JBrowse link
vesicle budding from membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 involved_in ISO (PMID:23861394) RGD PMID:23861394 NCBI chr 8:70,105,268...70,141,663
Ensembl chr 8:70,105,253...70,141,658
JBrowse link
G Ap2m1 adaptor related protein complex 2 subunit mu 1 involved_in ISO (PMID:25898166) RGD PMID:25898166 NCBI chr11:80,355,307...80,364,218
Ensembl chr11:80,328,041...80,364,140
JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 3:143,170,859...143,211,376
Ensembl chr 3:143,170,902...143,210,844
JBrowse link
G Chmp4bl1 chromatin modifying protein 4B-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:68,049,742...68,050,791
Ensembl chr 4:68,049,705...68,050,676
JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 2:91,391,729...91,428,652
Ensembl chr 2:91,388,530...91,428,668
JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:56,081,385...56,098,529
Ensembl chr 5:56,081,343...56,098,529
JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:105,191,972...105,197,642
Ensembl chr10:105,191,950...105,197,640
JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:44,790,983...44,806,216
Ensembl chr15:44,790,996...44,806,216
JBrowse link
G Fnbp1l formin binding protein 1-like involved_in ISO (PMID:20730103) RGD PMID:20730103 NCBI chr 2:210,647,241...210,748,203
Ensembl chr 2:210,647,246...210,738,455
JBrowse link
G Hint1-ps1 histidine triad nucleotide binding protein 1, pseudogene 1 TAS RGD PMID:12871960 RGD:724652 NCBI chr 4:92,100,994...92,101,568 JBrowse link
G Mob4 MOB family member 4, phocein involved_in TAS PMID:11872741 UniProt PMID:11872741 RGD:727348 NCBI chr 9:56,617,374...56,641,336
Ensembl chr 9:56,617,368...56,641,329
JBrowse link
G P2rx7 purinergic receptor P2X 7 acts_upstream_of_or_within ISO (PMID:15905573) RGD PMID:15905573 NCBI chr12:33,889,709...33,934,168
Ensembl chr12:33,879,745...33,934,619
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein involved_in ISO (PMID:25898166) RGD PMID:25898166 NCBI chr 1:144,056,415...144,138,045
Ensembl chr 1:144,056,721...144,137,557
JBrowse link
G S100a10 S100 calcium binding protein A10 involved_in ISO
IEA
(PMID:23861394)
GO_REF:0000107
RGD
Ensembl
PMID:23861394 GO_REF:0000107 NCBI chr 2:179,221,012...179,229,659
Ensembl chr 2:179,220,887...179,229,661
JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in ISO
IEA
(PMID:15075231)
GO_REF:0000107
RGD
Ensembl
PMID:15075231 GO_REF:0000107 NCBI chr19:34,934,999...34,948,888
Ensembl chr19:34,934,961...34,948,887
JBrowse link
G Wasl WASP like actin nucleation promoting factor involved_in IDA PMID:20730103 BHF-UCL PMID:20730103 RGD:8554834 NCBI chr 4:53,083,536...53,132,061
Ensembl chr 4:53,083,536...53,132,022
JBrowse link
vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C2cd5 C2 calcium-dependent domain containing 5 acts_upstream_of_or_within ISO (PMID:21907143) RGD PMID:21907143 NCBI chr 4:175,969,544...176,055,597
Ensembl chr 4:175,969,545...176,055,558
JBrowse link
G Cav2 caveolin 2 involved_in IEA
ISS
ISO
GO_REF:0000107
PMID:12743374
(PMID:12743374)
Ensembl
RGD
PMID:12743374 PMID:12743374 GO_REF:0000107, RGD:8554755 NCBI chr 4:45,616,766...45,624,144
Ensembl chr 4:45,616,712...45,624,244
JBrowse link
G Chp1 calcineurin-like EF-hand protein 1 IDA RGD PMID:8626580 RGD:724726 NCBI chr 3:106,536,009...106,571,255
Ensembl chr 3:106,536,004...106,571,251
JBrowse link
G Coro1a coronin 1A acts_upstream_of ISO MGI:3778894 (PMID:24270184) RGD PMID:24270184 NCBI chr 1:181,295,561...181,300,566
Ensembl chr 1:181,295,562...181,300,534
JBrowse link
G Dysf dysferlin involved_in ISO
IBA
(MGI:2657049|PMID:12736685)
GO_REF:0000033
RGD
GO_Central
PMID:12736685 GO_REF:0000033 MGI:2657049 NCBI chr 4:116,490,877...116,690,709
Ensembl chr 4:116,490,616...116,690,709
JBrowse link
G Eea1 early endosome antigen 1 involved_in ISO (PMID:9697774) RGD PMID:9697774 NCBI chr 7:30,554,686...30,722,186
Ensembl chr 7:30,554,552...30,718,487
JBrowse link
G Gnai3 G protein subunit alpha i3 IDA RGD PMID:12038977 RGD:728690 NCBI chr 2:195,742,765...195,780,720
Ensembl chr 2:195,742,642...195,780,742
JBrowse link
G Gosr1 golgi SNAP receptor complex member 1 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr10:61,570,499...61,607,287
Ensembl chr10:61,450,494...61,607,177
Ensembl chr10:61,450,494...61,607,177
JBrowse link
G Gosr2 golgi SNAP receptor complex member 2 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr10:88,585,291...88,605,642
Ensembl chr10:88,586,299...88,605,625
JBrowse link
G Stx12 syntaxin 12 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 5:145,062,978...145,092,423
Ensembl chr 5:145,063,587...145,092,377
JBrowse link
G Stx16 syntaxin 16 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:162,853,764...162,882,489
Ensembl chr 3:162,853,782...162,882,489
JBrowse link
G Stx17 syntaxin 17 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:62,446,187...62,504,451
JBrowse link
G Stx1b syntaxin 1B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:182,415,544...182,434,385
Ensembl chr 1:182,415,546...182,441,280
JBrowse link
G Stx2 syntaxin 2 TAS RGD PMID:10564647 PMID:8938452 RGD:1298910, RGD:728629 NCBI chr12:27,678,744...27,714,751
Ensembl chr12:27,689,819...27,714,751
JBrowse link
G Stx4 syntaxin 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:182,451,108...182,459,701
Ensembl chr 1:182,451,117...182,459,979
JBrowse link
G Stx5 syntaxin 5 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 1:205,637,401...205,653,563
Ensembl chr 1:205,637,413...205,653,563
JBrowse link
G Stx6 syntaxin 6 involved_in ISO
IEA
IBA
UniProtKB:Q15075 (PMID:10506127)
GO_REF:0000118
GO_REF:0000033
RGD
TreeGrafter
GO_Central
PMID:10506127 GO_REF:0000033 GO_REF:0000118 NCBI chr13:67,332,329...67,378,580
Ensembl chr13:67,332,314...67,378,576
JBrowse link
G Stx7 syntaxin 7 involved_in IDA
IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
RGD
PMID:15133481 GO_REF:0000033 GO_REF:0000118, RGD:4892614 NCBI chr 1:21,197,075...21,237,320
Ensembl chr 1:21,197,075...21,237,279
JBrowse link
G Stx8 syntaxin 8 involved_in IDA
IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
RGD
PMID:15133481 GO_REF:0000033 GO_REF:0000118, RGD:4892614 NCBI chr10:52,655,643...52,900,048
Ensembl chr10:52,654,990...52,894,993
JBrowse link
G Syt11 synaptotagmin 11 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 2:174,206,032...174,232,540
Ensembl chr 2:174,206,191...174,231,964
JBrowse link
G Syt13 synaptotagmin 13 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:78,877,114...78,917,527
Ensembl chr 3:78,877,114...78,917,392
JBrowse link
G Syt4 synaptotagmin 4 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr18:23,036,973...23,046,380
Ensembl chr18:23,038,378...23,046,332
JBrowse link
G Syt7 synaptotagmin 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:207,031,359...207,093,787
Ensembl chr 1:207,031,592...207,089,026
JBrowse link
G Vamp1 vesicle-associated membrane protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:158,012,634...158,019,350
Ensembl chr 4:158,012,663...158,019,349
JBrowse link
G Vamp2 vesicle-associated membrane protein 2 involved_in ISO
IBA
ISS
(PMID:30929742)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:30929742 GO_REF:0000024 GO_REF:0000033 NCBI chr10:53,793,581...53,797,815
Ensembl chr10:53,793,923...53,797,809
JBrowse link
G Vamp3 vesicle-associated membrane protein 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:161,498,109...161,508,704
Ensembl chr 5:161,498,109...161,508,751
JBrowse link
G Vamp7 vesicle-associated membrane protein 7 involved_in IDA
IBA
ISO
GO_REF:0000033
PMID:15133481
(PMID:10888671)
GO_Central
RGD
PMID:10888671 PMID:15133481 PMID:15133481 GO_REF:0000033, RGD:4892614, RGD:4892614 NCBI chr12:16,728,486...16,764,261
Ensembl chr12:16,728,524...16,764,097
JBrowse link
G Vamp8 vesicle-associated membrane protein 8 acts_upstream_of_or_within
involved_in
IDA
ISO
IBA
MGI:3056083 (PMID:18535671)
GO_REF:0000033
RGD
GO_Central
PMID:18535671 PMID:15133481 GO_REF:0000033, RGD:4892614 NCBI chr 4:104,442,383...104,452,884
Ensembl chr 4:104,442,393...104,452,897
JBrowse link
G Vamp9 vesicle-associated membrane protein 9 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr14:9,644,109...9,681,254
Ensembl chr14:9,644,582...9,681,205
JBrowse link
G Vav3 vav guanine nucleotide exchange factor 3 acts_upstream_of_or_within ISO MGI:98923 (PMID:15249579) RGD PMID:15249579 NCBI chr 2:197,011,901...197,354,321
Ensembl chr 2:197,011,831...197,354,321
JBrowse link
vesicle fusion to plasma membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trarg1 trafficking regulator of GLUT4 (SLC2A4) 1 acts_upstream_of_or_within ISO (PMID:26629404) RGD PMID:26629404 NCBI chr10:61,521,107...61,541,494
Ensembl chr10:61,521,107...61,541,494
JBrowse link
vesicle fusion with Golgi apparatus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bet1 Bet1 golgi vesicular membrane trafficking protein involved_in IDA
IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
RGD
PMID:16735505 GO_REF:0000033 GO_REF:0000118, RGD:4892613 NCBI chr 4:32,116,232...32,126,592
Ensembl chr 4:32,116,235...32,126,617
JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 2:185,500,029...185,520,811
Ensembl chr 2:185,500,004...185,522,026
JBrowse link
G Stx5 syntaxin 5 IDA RGD PMID:16735505 RGD:4892613 NCBI chr 1:205,637,401...205,653,563
Ensembl chr 1:205,637,413...205,653,563
JBrowse link
G Uso1 USO1 vesicle transport factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:15,866,638...15,932,185
Ensembl chr14:15,866,638...15,932,171
JBrowse link
G Vamp7 vesicle-associated membrane protein 7 IDA RGD PMID:16735505 RGD:4892613 NCBI chr12:16,728,486...16,764,261
Ensembl chr12:16,728,524...16,764,097
JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A involved_in IDA
IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
RGD
PMID:16735505 GO_REF:0000033 GO_REF:0000118, RGD:4892613 NCBI chr 1:254,356,343...254,661,854
Ensembl chr 1:254,356,429...254,661,852
JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 6:97,957,700...97,976,491
Ensembl chr 6:97,961,346...97,976,465
JBrowse link
G Yipf4 Yip1 domain family, member 4 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 6:20,950,774...20,962,195
Ensembl chr 6:20,950,501...20,962,229
JBrowse link
G Yipf4l1 Yip1 domain family, member 4 like 1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 6:26,923,605...26,924,789
Ensembl chr 6:26,923,795...26,924,535
Ensembl chr 6:26,923,795...26,924,535
JBrowse link
G Yipf5 Yip1 domain family, member 5 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr18:32,123,814...32,136,947
Ensembl chr18:32,123,842...32,157,642
JBrowse link
G Yipf7 Yip1 domain family, member 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:38,571,045...38,599,070
Ensembl chr14:38,571,066...38,599,055
JBrowse link
vesicle fusion with vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Syt4 synaptotagmin 4 involved_in IMP PMID:16618809 ParkinsonsUK-UCL PMID:16618809 RGD:11535113 NCBI chr18:23,036,973...23,046,380
Ensembl chr18:23,038,378...23,046,332
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    cellular process 18769
      cellular component organization or biogenesis 7217
        cellular component organization 6909
          organelle organization 3831
            vesicle organization 360
              Cvt vesicle assembly 0
              ciliary vesicle assembly 0
              contractile vacuole organization 0
              endosome organization + 61
              extracellular exosome assembly + 7
              gut granule assembly + 0
              phagolysosome assembly + 21
              pigment granule organization + 22
              secretory granule organization + 64
              synaptic vesicle maturation + 31
              vesicle budding from membrane + 71
              vesicle coating + 17
              vesicle fusion + 123
paths to the root