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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle organization
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Accession:GO:0016050 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vesicle.
Synonyms:exact_synonym: vesicle organisation
 related_synonym: vesicle organization and biogenesis



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vesicle organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Als2 alsin Rho guanine nucleotide exchange factor ALS2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:16085057)
Ensembl
RGD
PMID:16085057 GO_REF:0000107 NCBI chr 9:68,107,310...68,180,192
Ensembl chr 9:60,613,167...60,670,737
JBrowse link
G Cadps calcium dependent secretion activator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3583931 (PMID:15820695)
Ensembl
RGD
PMID:15820695 GO_REF:0000107 NCBI chr15:12,289,803...12,742,786
Ensembl chr15:12,290,262...12,742,779
JBrowse link
G Cav1 caveolin 1 involved_in ISO (PMID:12743374) RGD PMID:12743374 NCBI chr 4:46,606,538...46,639,616
Ensembl chr 4:45,634,918...45,673,705
JBrowse link
G Cav2 caveolin 2 involved_in ISO (PMID:12743374) RGD PMID:12743374 NCBI chr 4:46,582,681...46,590,058
Ensembl chr 4:45,616,712...45,624,244
JBrowse link
G Cd2ap CD2-associated protein IDA RGD PMID:15001553 RGD:1302417 NCBI chr 9:25,580,071...25,679,968
Ensembl chr 9:18,086,984...18,182,199
JBrowse link
G Fbxo5 F-box protein 5 acts_upstream_of_or_within ISO (PMID:17190794) RGD PMID:17190794 NCBI chr 1:44,601,412...44,607,781
Ensembl chr 1:42,196,068...42,202,437
JBrowse link
G Fnbp1l formin binding protein 1-like involved_in ISO (PMID:20730103) RGD PMID:20730103 NCBI chr 2:213,331,871...213,432,821
Ensembl chr 2:210,647,246...210,738,455
JBrowse link
G Plekhf1 pleckstrin homology and FYVE domain containing 1 involved_in ISO (PMID:22115783) RGD PMID:22115783 NCBI chr 1:100,045,340...100,046,817
Ensembl chr 1:90,904,742...90,915,820
JBrowse link
G Sar1b secretion associated, Ras related GTPase 1B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:36,525,365...36,555,009
Ensembl chr10:36,024,382...36,054,066
JBrowse link
G Snx10 sorting nexin 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:81,943,262...82,007,667
Ensembl chr 4:80,612,669...80,676,996
JBrowse link
G Snx11 sorting nexin 11 involved_in ISO
IBA
(PMID:23615901)
GO_REF:0000033
RGD
GO_Central
PMID:23615901 GO_REF:0000033 NCBI chr10:81,742,020...81,752,778
Ensembl chr10:81,742,024...81,752,712
JBrowse link
G Sort1 sortilin 1 involved_in IEA
ISO
IBA
GO_REF:0000107
(PMID:15992544)
GO_REF:0000033
Ensembl
RGD
GO_Central
PMID:15992544 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:198,609,466...198,690,481
Ensembl chr 2:195,924,099...196,002,354
JBrowse link
G Syt1 synaptotagmin 1 involved_in ISO (PMID:27191789) RGD PMID:27191789 NCBI chr 7:45,699,649...46,244,460
Ensembl chr 7:43,815,785...44,357,803
JBrowse link
G Wasl WASP like actin nucleation promoting factor involved_in IDA PMID:20730103 BHF-UCL PMID:20730103 RGD:8554834 NCBI chr 4:54,049,081...54,097,653
Ensembl chr 4:53,083,536...53,132,022
JBrowse link
G Wdr72 WD repeat domain 72 acts_upstream_of_or_within ISO (PMID:35181734) RGD PMID:35181734 NCBI chr 8:83,718,897...83,902,128
Ensembl chr 8:74,838,318...75,018,229
JBrowse link
acrosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acrbp acrosin binding protein involved_in ISO
IEA
ISS
(PMID:27303034)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:27303034 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:159,537,395...159,550,454
Ensembl chr 4:157,841,841...157,864,213
JBrowse link
G Actl7a actin-like 7a involved_in ISO
ISS
(PMID:32923619), (PMID:36734600)
GO_REF:0000024
RGD
UniProt
PMID:32923619 PMID:36734600 GO_REF:0000024 NCBI chr 5:76,242,201...76,245,647
Ensembl chr 5:71,447,071...71,450,908
JBrowse link
G Actl9 actin-like 9 involved_in ISO (PMID:33626338) RGD PMID:33626338 NCBI chr 7:14,936,690...14,938,067
Ensembl chr 7:14,234,504...14,235,881
JBrowse link
G Actl9b actin-like 9b involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:63,830,481...63,831,818
Ensembl chr 1:63,830,223...63,831,822
JBrowse link
G Agfg1 ArfGAP with FG repeats 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2182772 (PMID:11711676), (PMID:14724135)
GO_Central
RGD
PMID:11711676 PMID:14724135 GO_REF:0000033 NCBI chr 9:91,572,962...91,630,688
Ensembl chr 9:84,125,120...84,178,128
JBrowse link
G Agfg1-ps1 ArfGAP with FG repeats 1, pseudogene 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 3:138,778,150...138,779,864 JBrowse link
G Agfg2 ArfGAP with FG repeats 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:19,012,228...19,048,433
Ensembl chr12:19,012,258...19,048,421
JBrowse link
G Ccdc136 coiled-coil domain containing 136 involved_in ISO
IBA
(PMID:27076447)
GO_REF:0000033
RGD
GO_Central
PMID:27076447 GO_REF:0000033 NCBI chr 4:58,963,196...58,992,962
Ensembl chr 4:57,997,853...58,027,646
JBrowse link
G Ccdc38 coiled-coil domain containing 38 involved_in ISO (PMID:37709195) RGD PMID:37709195 NCBI chr 7:28,055,883...28,129,938
Ensembl chr 7:28,059,798...28,130,441
JBrowse link
G Ccdc42 coiled-coil domain containing 42 acts_upstream_of_or_within ISO MGI:3800251 (PMID:26945718) RGD PMID:26945718 NCBI chr10:53,289,956...53,300,135
Ensembl chr10:53,289,956...53,300,135
JBrowse link
G Chn2 chimerin 2 involved_in IEP
IBA
GO_REF:0000033 GO_Central
RGD
PMID:8440677 GO_REF:0000033, RGD:724725 NCBI chr 4:83,148,616...83,407,711
Ensembl chr 4:83,147,983...83,407,709
JBrowse link
G Cylc1 cylicin 1 acts_upstream_of_or_within
involved_in
ISO (PMID:38573307) RGD PMID:38573307 NCBI chr  X:80,224,288...80,313,698
Ensembl chr  X:76,108,136...76,197,422
JBrowse link
G Dcaf17 DDB1 and CUL4 associated factor 17 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:29907856)
GO_REF:0000107
RGD
Ensembl
PMID:29907856 GO_REF:0000107 NCBI chr 3:55,863,776...55,895,601
Ensembl chr 3:55,863,799...55,891,820
JBrowse link
G Fabp9 fatty acid binding protein 9 IEP RGD PMID:7958448 RGD:634410 NCBI chr 2:91,591,842...91,595,873
Ensembl chr 2:91,592,298...91,595,873
JBrowse link
G Fam209 family with sequence similarity 209 involved_in ISO (PMID:34471926) RGD PMID:34471926 NCBI chr 3:161,240,062...161,241,747
Ensembl chr 3:161,240,034...161,241,755
JBrowse link
G Fsip1 fibrous sheath interacting protein 1 acts_upstream_of_or_within ISO (PMID:33901807) RGD PMID:33901807 NCBI chr 3:105,074,584...105,217,180
Ensembl chr 3:105,068,543...105,217,167
JBrowse link
G Garin1a golgi associated RAB2 interactor 1A involved_in ISS
ISO
GO_REF:0000024
(PMID:34714330)
UniProt
RGD
PMID:34714330 GO_REF:0000024 NCBI chr 4:57,880,019...57,890,824
Ensembl chr 4:57,880,019...57,890,820
JBrowse link
G Garin1b golgi associated RAB2 interactor 1B involved_in ISS
ISO
GO_REF:0000024
(PMID:34714330)
UniProt
RGD
PMID:34714330 GO_REF:0000024 NCBI chr 4:57,915,184...57,938,593
Ensembl chr 4:57,920,790...57,938,591
JBrowse link
G Garin3 golgi associated RAB2 interactor family member 3 acts_upstream_of_or_within ISO (PMID:38935810) RGD PMID:38935810 NCBI chr10:31,331,196...31,334,434
Ensembl chr10:30,829,877...30,833,111
JBrowse link
G Izumo3 IZUMO family member 3 involved_in ISO
IEA
(PMID:34114279)
GO_REF:0000107
RGD
Ensembl
PMID:34114279 GO_REF:0000107 NCBI chr 5:106,874,321...106,876,978
Ensembl chr 5:106,874,351...106,877,004
JBrowse link
G Kiaa0319l KIAA0319 like acts_upstream_of_or_within ISO MGI:6111779 (PMID:29991750) RGD PMID:29991750 NCBI chr 5:144,332,242...144,425,182
Ensembl chr 5:139,046,143...139,140,715
JBrowse link
G Mfsd14a major facilitator superfamily domain containing 14A acts_upstream_of_or_within ISO MGI:5763015 (PMID:27107036) RGD PMID:27107036 NCBI chr 2:207,264,081...207,305,880
Ensembl chr 2:204,579,174...204,659,319
JBrowse link
G Nectin2 nectin cell adhesion molecule 2 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:2183405 (PMID:10733589)
GO_REF:0000033
RGD
GO_Central
PMID:10733589 GO_REF:0000033 NCBI chr 1:88,500,086...88,535,474
Ensembl chr 1:79,372,119...79,407,360
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 acts_upstream_of_or_within ISO MGI:2683481 (PMID:13129914) RGD PMID:13129914 NCBI chr10:60,031,441...60,090,259
Ensembl chr10:59,534,117...59,591,808
JBrowse link
G Pdcl2 phosducin-like 2 involved_in
acts_upstream_of_or_within
ISO (PMID:36278277)
MGI:7546801 (PMID:36278277)
RGD PMID:36278277 NCBI chr14:32,228,776...32,249,467
Ensembl chr14:31,874,578...31,895,272
JBrowse link
G Pfn4 profilin family, member 4 involved_in ISS
ISO
GO_REF:0000024
(PMID:35950913)
UniProt
RGD
PMID:35950913 GO_REF:0000024 NCBI chr 6:27,786,619...27,796,710
Ensembl chr 6:27,786,619...27,796,710
JBrowse link
G Pla2g3 phospholipase A2, group III acts_upstream_of_or_within ISO MGI:4461174 (PMID:20424323) RGD PMID:20424323 NCBI chr14:78,367,625...78,373,913
Ensembl chr14:78,368,105...78,373,913
JBrowse link
G Pln phospholamban involved_in ISS
ISO
GO_REF:0000024
(PMID:30733280)
UniProt
RGD
PMID:30733280 GO_REF:0000024 NCBI chr20:33,166,512...33,182,241 JBrowse link
G Poc1b POC1 centriolar protein B acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:30298696), (PMID:37070736)
GO_REF:0000107
RGD
Ensembl
PMID:30298696 PMID:37070736 GO_REF:0000107 NCBI chr 7:35,810,761...35,912,571
Ensembl chr 7:33,924,189...34,025,903
JBrowse link
G Rfx2 regulatory factor X2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:26162102)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:26162102 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:1,691,762...1,759,159
Ensembl chr 9:1,604,646...1,671,027
JBrowse link
G Sec23ip SEC23 interacting protein acts_upstream_of_or_within ISO MGI:5085903 (PMID:21640725) RGD PMID:21640725 NCBI chr 1:192,751,379...192,794,345
Ensembl chr 1:183,321,075...183,363,920
JBrowse link
G Slc9a8 solute carrier family 9 member A8 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:28476888)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:28476888 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:176,559,658...176,617,510
Ensembl chr 3:156,148,104...156,198,471
JBrowse link
G Spaca1 sperm acrosome associated 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:5439282 (PMID:22949614)
GO_Central
RGD
PMID:22949614 GO_REF:0000033 NCBI chr 5:53,321,741...53,337,018
Ensembl chr 5:48,525,406...48,540,711
JBrowse link
G Spink2 serine peptidase inhibitor, Kazal type 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:28554943)
UniProt
RGD
PMID:28554943 GO_REF:0000024 NCBI chr14:31,321,976...31,328,622
Ensembl chr14:30,967,714...30,974,326
JBrowse link
G Sppl2c signal peptide peptidase like 2C involved_in ISO (PMID:30733280), (PMID:30733281) RGD PMID:30733280 PMID:30733281 NCBI chr10:89,095,279...89,097,487
Ensembl chr10:89,095,261...89,098,580
JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within ISO MGI:1856684 (PMID:24239381) RGD PMID:24239381 NCBI chr 3:161,228,699...161,247,319
Ensembl chr 3:140,768,537...140,785,121
JBrowse link
G Tbpl1 TATA-box binding protein like 1 acts_upstream_of_or_within ISO MGI:2182539 (PMID:11861477) RGD PMID:11861477 NCBI chr 1:24,597,028...24,622,445
Ensembl chr 1:22,778,459...22,803,122
Ensembl chr 1:22,778,459...22,803,122
JBrowse link
G Tmf1 TATA element modulatory factor 1 acts_upstream_of_or_within ISO MGI:4867389|MGI:4867392 (PMID:20691678) RGD PMID:20691678 NCBI chr 4:131,316,630...131,345,666
Ensembl chr 4:129,763,114...129,785,629
JBrowse link
G Tmprss12 transmembrane serine protease 12 involved_in ISO (PMID:35547804) RGD PMID:35547804 NCBI chr 7:131,433,158...131,445,806
Ensembl chr 7:131,433,484...131,445,791
JBrowse link
G Txndc8 thioredoxin domain containing 8 IEP RGD PMID:15181017 RGD:1303999 NCBI chr 5:77,544,828...77,580,977
Ensembl chr 5:72,749,725...72,785,931
JBrowse link
G Vps13b vacuolar protein sorting 13 homolog B involved_in ISO (PMID:31218450) RGD PMID:31218450 NCBI chr 7:68,436,996...69,013,574
Ensembl chr 7:66,558,471...67,128,429
JBrowse link
G Zpbp zona pellucida binding protein involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:3762589 (PMID:17664285)
GO_Central
RGD
PMID:17664285 GO_REF:0000033 NCBI chr14:90,047,207...90,244,727
Ensembl chr14:85,833,548...86,033,095
JBrowse link
G Zpbp2 zona pellucida binding protein 2 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:3762590 (PMID:17664285)
GO_Central
RGD
PMID:17664285 GO_REF:0000033 NCBI chr10:84,055,184...84,063,776
Ensembl chr10:83,559,016...83,567,508
JBrowse link
autophagosome-endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rubcnl rubicon like autophagy enhancer involved_in ISO
IBA
(PMID:28306502)
GO_REF:0000033
RGD
GO_Central
PMID:28306502 GO_REF:0000033 NCBI chr15:56,741,897...56,807,086
Ensembl chr15:50,332,418...50,400,849
JBrowse link
autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028769.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Arl8b ARF like GTPase 8B involved_in ISS
ISO
GO_REF:0000024
(PMID:28325809)
UniProt
RGD
PMID:28325809 GO_REF:0000024 NCBI chr 4:143,304,597...143,348,580
Ensembl chr 4:141,748,587...141,792,596
JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO
IBA
(PMID:30538141)
GO_REF:0000033
RGD
GO_Central
PMID:30538141 GO_REF:0000033 NCBI chr 5:158,575,727...158,595,157
Ensembl chr 5:153,292,751...153,312,139
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:26450516) RGD PMID:26450516 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
JBrowse link
G Diaph3 diaphanous-related formin 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:33036023)
Ensembl
RGD
PMID:33036023 GO_REF:0000107 NCBI chr15:68,951,992...69,421,623
Ensembl chr15:62,543,375...63,012,975
JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:29727621)
Ensembl
UniProt
RGD
PMID:29727621 GO_REF:0000024 GO_REF:0000107 NCBI chr17:81,496,669...81,668,180
Ensembl chr17:81,496,670...81,668,029
JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO
IEA
ISS
(PMID:29727621)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:29727621 GO_REF:0000024 GO_REF:0000107 NCBI chr10:82,706,016...82,734,938
Ensembl chr10:82,701,098...82,734,938
JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 involved_in ISS
ISO
GO_REF:0000024
(PMID:28325809)
UniProt
RGD
PMID:28325809 GO_REF:0000024 NCBI chr10:88,313,837...88,366,182
Ensembl chr10:88,314,651...88,362,412
JBrowse link
G Rubcnl rubicon like autophagy enhancer involved_in ISO
IBA
(PMID:28306502)
GO_REF:0000033
RGD
GO_Central
PMID:28306502 GO_REF:0000033 NCBI chr15:56,741,897...56,807,086
Ensembl chr15:50,332,418...50,400,849
JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) RGD PMID:23023224 NCBI chr19:13,411,227...13,446,129
Ensembl chr19:13,405,501...13,440,384
JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in ISO (PMID:33422265) RGD PMID:33422265 NCBI chr 3:127,721,076...127,758,658
Ensembl chr 3:107,267,310...107,304,975
JBrowse link
calcium-dependent activation of synaptic vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Doc2a double C2 domain alpha involved_in IBA
ISO
IDA
IMP
GO_REF:0000033
(PMID:20150444)
PMID:22036572
GO_Central
RGD
PMID:20150444 PMID:22036572 PMID:22036572 GO_REF:0000033, RGD:155230732, RGD:155230732 NCBI chr 1:181,457,415...181,462,528
Ensembl chr 1:181,458,390...181,462,030
JBrowse link
G Doc2b double C2 domain beta involved_in IBA
ISO
IDA
IMP
IEA
GO_REF:0000033
(PMID:20150444)
PMID:22036572
GO_REF:0000107
GO_Central
RGD
Ensembl
PMID:20150444 PMID:22036572 PMID:22036572 GO_REF:0000033 GO_REF:0000107, RGD:155230732, RGD:155230732 NCBI chr10:61,126,295...61,151,533
Ensembl chr10:60,628,029...60,653,267
JBrowse link
G Rph3a rabphilin 3A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:41,203,004...41,279,536
Ensembl chr12:35,542,728...35,617,592
JBrowse link
G Rph3al rabphilin 3A-like (without C2 domains) involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:61,188,288...61,331,591
Ensembl chr10:60,690,031...60,801,883
JBrowse link
G Syt1 synaptotagmin 1 involved_in IBA
ISO
GO_REF:0000033
(PMID:7954835)
GO_Central
RGD
PMID:7954835 GO_REF:0000033 NCBI chr 7:45,699,649...46,244,460
Ensembl chr 7:43,815,785...44,357,803
JBrowse link
G Syt11 synaptotagmin 11 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:176,503,845...176,530,354
Ensembl chr 2:174,206,191...174,231,964
JBrowse link
G Syt13 synaptotagmin 13 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:99,332,554...99,372,960
Ensembl chr 3:78,877,114...78,917,392
JBrowse link
G Syt2 synaptotagmin 2 involved_in IBA
ISO
GO_REF:0000033
(PMID:17192432)
GO_Central
RGD
PMID:17192432 GO_REF:0000033 NCBI chr13:46,088,046...46,197,976
Ensembl chr13:46,185,282...46,193,859
JBrowse link
G Syt4 synaptotagmin 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:23,036,973...23,046,380
Ensembl chr18:23,038,378...23,046,332
JBrowse link
G Syt5 synaptotagmin 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:78,320,034...78,327,750
Ensembl chr 1:69,277,351...69,285,067
JBrowse link
G Syt7 synaptotagmin 7 involved_in IBA
ISO
GO_REF:0000033
(PMID:24267651)
GO_Central
RGD
PMID:24267651 GO_REF:0000033 NCBI chr 1:216,456,148...216,518,718
Ensembl chr 1:207,031,592...207,089,026
JBrowse link
G Syt8 synaptotagmin 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:197,588,126...197,593,598
Ensembl chr 1:197,590,149...197,593,504
JBrowse link
G Syt9 synaptotagmin 9 involved_in IEA
ISO
GO_REF:0000107
(PMID:17521570)
Ensembl
RGD
PMID:17521570 GO_REF:0000107 NCBI chr 1:170,687,666...170,868,146
Ensembl chr 1:161,275,734...161,455,007
JBrowse link
COPI coating of Golgi vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfgap2 ARF GTPase activating protein 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:77,236,305...77,248,445
Ensembl chr 3:77,236,322...77,248,455
JBrowse link
G Arfgap3 ARF GTPase activating protein 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:116,312,996...116,359,300
Ensembl chr 7:114,432,873...114,479,208
JBrowse link
G Gbf1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 involved_in ISO (PMID:12047556), (PMID:17956946) RGD PMID:12047556 PMID:17956946 NCBI chr 1:254,959,784...255,088,479
Ensembl chr 1:245,018,568...245,147,042
JBrowse link
G Tmed9 transmembrane p24 trafficking protein 9 involved_in ISO
IBA
IEA
(PMID:18287528)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:18287528 GO_REF:0000033 GO_REF:0000107 NCBI chr17:9,034,797...9,039,311
Ensembl chr17:9,029,646...9,034,176
JBrowse link
COPI-coated vesicle budding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tmed10 transmembrane p24 trafficking protein 10 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:10052452)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:10052452 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:110,722,887...110,757,743
Ensembl chr 6:104,991,838...105,026,753
JBrowse link
COPII vesicle coating term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul3 cullin 3 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:22358839)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:22358839 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:89,040,987...89,118,775
Ensembl chr 9:81,592,641...81,670,462
JBrowse link
G Klhl12 kelch-like family member 12 involved_in ISS
IBA
ISO
IEA
GO_REF:0000024
GO_REF:0000033
(PMID:22358839), (PMID:27716508)
GO_REF:0000107
UniProt
GO_Central
RGD
Ensembl
PMID:22358839 PMID:27716508 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:48,451,920...48,485,638
Ensembl chr13:45,899,928...45,933,643
JBrowse link
G Pdcd6 programmed cell death 6 involved_in ISO
ISS
(PMID:27716508)
GO_REF:0000024
RGD
UniProt
PMID:27716508 GO_REF:0000024 NCBI chr 1:28,966,518...28,982,188
Ensembl chr 1:28,966,518...28,982,189
JBrowse link
G Pef1 penta-EF hand domain containing 1 involved_in ISS
IBA
IEA
ISO
GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:27716508)
UniProt
GO_Central
Ensembl
RGD
PMID:27716508 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:142,451,791...142,475,061
Ensembl chr 5:142,451,778...142,475,067
JBrowse link
G Preb prolactin regulatory element binding involved_in IDA PMID:11422940 UniProt PMID:11422940 RGD:11344947 NCBI chr 6:31,138,757...31,142,544
Ensembl chr 6:25,418,776...25,422,590
JBrowse link
G Sar1a secretion associated, Ras related GTPase 1A involved_in ISO (PMID:23433038), (PMID:32358066) RGD PMID:23433038 PMID:32358066 NCBI chr20:30,166,310...30,178,718
Ensembl chr20:29,623,553...29,635,935
JBrowse link
G Sar1b secretion associated, Ras related GTPase 1B involved_in ISS
ISO
GO_REF:0000024
(PMID:23433038), (PMID:32358066)
UniProt
RGD
PMID:23433038 PMID:32358066 GO_REF:0000024 NCBI chr10:36,525,365...36,555,009
Ensembl chr10:36,024,382...36,054,066
JBrowse link
G Tfg trafficking from ER to golgi regulator involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:43,885,542...43,911,976
Ensembl chr11:43,885,661...43,911,976
JBrowse link
COPII-coated vesicle budding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:148,433,344...148,446,735
Ensembl chr 4:146,875,524...146,891,173
JBrowse link
G Sec13-ps2 SEC13 homolog, nuclear pore and COPII coat complex component, pseudogene 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:967,396...968,674
Ensembl chr18:967,394...968,680
Ensembl chr18:967,394...968,680
JBrowse link
G Vapa VAMP associated protein A involved_in ISO (PMID:18713837) RGD PMID:18713837 NCBI chr 9:112,624,791...112,654,731
Ensembl chr 9:105,177,907...105,207,847
JBrowse link
G Vapb VAMP associated protein B and C involved_in ISO (PMID:18713837) RGD PMID:18713837 NCBI chr 3:182,954,247...182,997,018
Ensembl chr 3:162,535,905...162,573,763
JBrowse link
COPII-coated vesicle cargo loading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cideb cell death-inducing DFFA-like effector b involved_in ISO (PMID:30858281) RGD PMID:30858281 NCBI chr15:33,222,135...33,226,407
Ensembl chr15:29,252,213...29,256,605
JBrowse link
G Mia3 MIA SH3 domain ER export factor 3 involved_in ISO (PMID:27138255) RGD PMID:27138255 NCBI chr13:97,502,040...97,547,155
Ensembl chr13:94,970,424...95,011,972
JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO (PMID:17684057) RGD PMID:17684057 NCBI chr14:98,623,582...98,648,766
Ensembl chr14:94,415,275...94,448,248
JBrowse link
G Sar1a secretion associated, Ras related GTPase 1A involved_in ISO (PMID:17499046), (PMID:18843296), (PMID:23433038) RGD PMID:17499046 PMID:18843296 PMID:23433038 NCBI chr20:30,166,310...30,178,718
Ensembl chr20:29,623,553...29,635,935
JBrowse link
G Sar1b secretion associated, Ras related GTPase 1B involved_in ISO
ISS
(PMID:23433038), (PMID:32358066), (PMID:33186557)
GO_REF:0000024
RGD
UniProt
PMID:23433038 PMID:32358066 PMID:33186557 GO_REF:0000024 NCBI chr10:36,525,365...36,555,009
Ensembl chr10:36,024,382...36,054,066
JBrowse link
G Scap SREBF chaperone involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 8:110,306,026...110,360,677
Ensembl chr 8:110,306,031...110,360,666
JBrowse link
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component involved_in ISO (PMID:17499046), (PMID:18843296) RGD PMID:17499046 PMID:18843296 NCBI chr 4:148,433,344...148,446,735
Ensembl chr 4:146,875,524...146,891,173
JBrowse link
G Sec23a Sec23 homolog A, COPII coat complex component involved_in ISO
IBA
UniProtKB:P15303 (PMID:17499046), (PMID:18843296), (PMID:8898360)
GO_REF:0000033
RGD
GO_Central
PMID:8898360 PMID:17499046 PMID:18843296 GO_REF:0000033 NCBI chr 6:82,393,699...82,442,594
Ensembl chr 6:76,658,427...76,706,035
JBrowse link
G Sec23b Sec23 homolog B, COPII coat complex component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:152,392,340...152,434,813
Ensembl chr 3:131,939,337...131,981,489
JBrowse link
G Sec24a SEC24 homolog A, COPII coat complex component involved_in ISO
IBA
(PMID:17499046), (PMID:18843296)
GO_REF:0000033
RGD
GO_Central
PMID:17499046 PMID:18843296 GO_REF:0000033 NCBI chr10:36,450,043...36,525,303
Ensembl chr10:35,947,031...36,024,353
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component involved_in ISO
IBA
(PMID:17499046), (PMID:18843296)
GO_REF:0000033
RGD
GO_Central
PMID:17499046 PMID:18843296 GO_REF:0000033 NCBI chr 2:221,236,897...221,306,986
Ensembl chr 2:218,562,676...218,632,699
JBrowse link
G Sec24c SEC24 homolog C, COPII coat complex component involved_in ISO
IBA
(PMID:17499046), (PMID:18843296)
GO_REF:0000033
RGD
GO_Central
PMID:17499046 PMID:18843296 GO_REF:0000033 NCBI chr15:3,602,460...3,624,524
Ensembl chr15:3,602,460...3,624,422
JBrowse link
G Sec24d SEC24 homolog D, COPII coat complex component involved_in ISO
IBA
(PMID:17499046), (PMID:18843296)
GO_REF:0000033
RGD
GO_Central
PMID:17499046 PMID:18843296 GO_REF:0000033 NCBI chr 2:214,103,138...214,211,155
Ensembl chr 2:211,418,623...211,526,587
JBrowse link
G Sec31a SEC31 homolog A, COPII coat complex component involved_in ISO
IBA
IEA
(PMID:17499046), (PMID:18843296)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:17499046 PMID:18843296 GO_REF:0000033 GO_REF:0000107 NCBI chr14:9,518,655...9,573,579
Ensembl chr14:9,214,349...9,269,273
JBrowse link
G Sec31b SEC31 homolog B, COPII coat complex component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:243,376,283...243,404,557
Ensembl chr 1:243,378,456...243,404,557
JBrowse link
G Surf4 surfeit 4 involved_in ISO (PMID:33186557) RGD PMID:33186557 NCBI chr 3:30,646,435...30,659,641
Ensembl chr 3:10,241,837...10,263,315
JBrowse link
G Tbc1d20 TBC1 domain family, member 20 involved_in ISO (PMID:17684057) RGD PMID:17684057 NCBI chr 3:161,228,699...161,247,319
Ensembl chr 3:140,768,537...140,785,121
JBrowse link
dense core granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baiap3 BAI1-associated protein 3 involved_in ISO (PMID:28626000) RGD PMID:28626000 NCBI chr10:14,764,768...14,777,516
Ensembl chr10:14,260,269...14,273,019
JBrowse link
G Ptprn protein tyrosine phosphatase, receptor type, N involved_in IEA
ISO
GO_REF:0000107
UniProtKB:Q6P4T1 (PMID:24843546)
Ensembl
RGD
PMID:24843546 GO_REF:0000107 NCBI chr 9:84,189,676...84,205,364
Ensembl chr 9:76,741,016...76,756,190
JBrowse link
G Snx19 sorting nexin 19 involved_in
acts_upstream_of_or_within
ISO UniProtKB:Q6P4T1 (PMID:24843546) RGD PMID:24843546 NCBI chr 8:37,088,142...37,125,317
Ensembl chr 8:28,829,886...28,867,061
JBrowse link
endosomal lumen acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp11 aquaporin 11 acts_upstream_of_or_within ISO MGI:3528447 (PMID:16107722) RGD PMID:16107722 NCBI chr 1:161,457,752...161,467,918
Ensembl chr 1:152,046,517...152,056,725
JBrowse link
G Faslg Fas ligand IDA RGD PMID:18045865 RGD:2315735 NCBI chr13:76,680,885...76,706,042
Ensembl chr13:74,154,954...74,162,215
JBrowse link
G Rnasek ribonuclease K involved_in ISO UniProtKB:Q15904 (PMID:26212330) RGD PMID:26212330 NCBI chr10:55,453,561...55,455,279
Ensembl chr10:54,951,991...54,956,601
JBrowse link
G Tmem9 transmembrane protein 9 involved_in ISO (PMID:30374053) RGD PMID:30374053 NCBI chr13:47,458,486...47,475,832
Ensembl chr13:47,458,498...47,475,832
JBrowse link
endosomal vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankfy1 ankyrin repeat and FYVE domain containing 1 involved_in ISO (PMID:15328530) RGD PMID:15328530 NCBI chr10:57,312,246...57,383,964
Ensembl chr10:57,312,246...57,383,964
JBrowse link
G Rab14 RAB14, member RAS oncogene family involved_in ISO
IEA
(PMID:20534812)
GO_REF:0000107
RGD
Ensembl
PMID:20534812 GO_REF:0000107 NCBI chr 3:38,899,430...38,920,572
Ensembl chr 3:18,501,963...18,523,172
JBrowse link
G Rab4b RAB4B, member RAS oncogene family involved_in ISO
IEA
(PMID:20534812)
GO_REF:0000107
RGD
Ensembl
PMID:20534812 GO_REF:0000107 NCBI chr 1:82,461,396...82,472,784
Ensembl chr 1:82,461,396...82,472,763
JBrowse link
G Rufy1 RUN and FYVE domain containing 1 involved_in ISO (PMID:20534812) RGD PMID:20534812 NCBI chr10:35,206,801...35,251,696
Ensembl chr10:34,705,741...34,750,644
JBrowse link
G Samd9 sterile alpha motif domain containing 9 involved_in ISO (PMID:24029230) RGD PMID:24029230 NCBI chr 4:32,119,318...32,139,008
Ensembl chr 4:31,164,510...31,184,322
JBrowse link
G Samd9l sterile alpha motif domain containing 9 like acts_upstream_of_or_within ISO (PMID:24029230) RGD PMID:24029230 NCBI chr 4:31,362,054...31,376,412
Ensembl chr 4:31,361,669...31,376,415
JBrowse link
G Tgfbrap1 transforming growth factor, beta receptor associated protein 1 involved_in ISO
IBA
(PMID:25266290)
GO_REF:0000033
RGD
GO_Central
PMID:25266290 GO_REF:0000033 NCBI chr 9:45,320,975...45,371,329
Ensembl chr 9:45,320,930...45,371,311
JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:21148287) RGD PMID:21148287 NCBI chr 8:44,684,129...44,698,568
Ensembl chr 8:44,684,127...44,698,568
JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in ISO
IBA
(PMID:23167963)
GO_REF:0000033
RGD
GO_Central
PMID:23167963 GO_REF:0000033 NCBI chr 3:127,721,076...127,758,658
Ensembl chr 3:107,267,310...107,304,975
JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in ISO
IBA
(PMID:23167963)
GO_REF:0000033
RGD
GO_Central
PMID:23167963 GO_REF:0000033 NCBI chr17:50,758,732...50,923,129
Ensembl chr17:46,063,124...46,227,791
JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in IEA
ISO
GO_REF:0000107
(PMID:15075231)
Ensembl
RGD
PMID:15075231 GO_REF:0000107 NCBI chr19:51,838,411...51,858,639
Ensembl chr19:34,934,961...34,948,887
JBrowse link
G Vps8 VPS8 subunit of CORVET complex involved_in ISO
IBA
(PMID:25266290)
GO_REF:0000033
RGD
GO_Central
PMID:25266290 GO_REF:0000033 NCBI chr11:79,402,236...79,634,234
Ensembl chr11:79,402,239...79,634,133
JBrowse link
endosome membrane tubulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coro1c coronin 1C involved_in ISO (PMID:30220460) RGD PMID:30220460 NCBI chr12:48,373,573...48,445,718
Ensembl chr12:42,712,991...42,785,179
JBrowse link
G Tmcc1 transmembrane and coiled-coil domain family 1 involved_in ISO
IBA
(PMID:30220460)
GO_REF:0000033
RGD
GO_Central
PMID:30220460 GO_REF:0000033 NCBI chr 4:149,069,252...149,239,585
Ensembl chr 4:149,069,260...149,239,620
JBrowse link
endosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aktip AKT interacting protein involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:18799622)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:18799622 GO_REF:0000024 GO_REF:0000107 NCBI chr19:15,866,811...15,877,123
Ensembl chr19:15,866,928...15,886,663
JBrowse link
G Anxa8 annexin A8 involved_in ISO
IBA
(PMID:18923148)
GO_REF:0000033
RGD
GO_Central
PMID:18923148 GO_REF:0000033 NCBI chr16:9,403,267...9,418,317
Ensembl chr16:9,397,113...9,412,043
JBrowse link
G Arfgef2 ARF guanine nucleotide exchange factor 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:20360857)
UniProt
RGD
PMID:20360857 GO_REF:0000024 NCBI chr 3:155,547,504...155,633,652
Ensembl chr 3:155,547,538...155,630,856
JBrowse link
G Cc2d1a coiled-coil and C2 domain containing 1A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:6458917 (PMID:26720614)
Ensembl
RGD
PMID:26720614 GO_REF:0000107 NCBI chr19:40,916,587...40,931,702
Ensembl chr19:24,011,938...24,026,936
JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in ISO (PMID:16041373) RGD PMID:16041373 NCBI chr11:16,783,971...16,810,500
Ensembl chr11:3,337,494...3,385,181
JBrowse link
G Dnajc13 DnaJ heat shock protein family (Hsp40) member C13 involved_in ISO (PMID:24643499) RGD PMID:24643499 NCBI chr 8:113,646,573...113,756,104
Ensembl chr 8:104,767,788...104,877,317
JBrowse link
G Dnm1 dynamin 1 involved_in ISO
IEA
(PMID:19706678)
GO_REF:0000107
RGD
Ensembl
PMID:19706678 GO_REF:0000107 NCBI chr 3:15,604,782...15,648,654
Ensembl chr 3:15,604,784...15,648,538
JBrowse link
G Exoc8 exocyst complex component 8 involved_in ISO (PMID:24344185) RGD PMID:24344185 NCBI chr19:69,752,387...69,754,876
Ensembl chr19:52,852,578...52,857,491
JBrowse link
G Fhip1b FHF complex subunit HOOK interacting protein 1B involved_in ISS
IBA
ISO
IEA
GO_REF:0000024
GO_REF:0000033
(PMID:18799622)
GO_REF:0000107
UniProt
GO_Central
RGD
Ensembl
PMID:18799622 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:159,718,679...159,748,449
Ensembl chr 1:159,726,004...159,748,408
JBrowse link
G Hook1 hook microtubule-tethering protein 1 involved_in ISO (PMID:18799622) RGD PMID:18799622 NCBI chr 5:115,940,199...116,003,482
Ensembl chr 5:110,824,501...110,887,787
JBrowse link
G Hook2 hook microtubule-tethering protein 2 involved_in ISO (PMID:18799622) RGD PMID:18799622 NCBI chr19:40,056,732...40,075,027
Ensembl chr19:23,151,870...23,164,181
JBrowse link
G Hook3 hook microtubule-tethering protein 3 involved_in ISO (PMID:18799622) RGD PMID:18799622 NCBI chr16:72,656,929...72,751,696
Ensembl chr16:65,954,350...66,061,338
JBrowse link
G Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 involved_in ISO
ISS
(PMID:19177150)
GO_REF:0000024
RGD
UniProt
PMID:19177150 GO_REF:0000024 NCBI chr 1:165,684,001...165,689,698
Ensembl chr 1:156,272,064...156,291,179
JBrowse link
G Lamtor1l1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 like 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:38,446,140...38,447,189
Ensembl chr  X:34,637,459...34,638,516
JBrowse link
G Laptm4b lysosomal protein transmembrane 4 beta involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:21224396)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21224396 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:65,434,525...65,477,386
Ensembl chr 7:65,434,394...65,477,383
JBrowse link
G Pheta1 PH domain containing endocytic trafficking adaptor 1 involved_in ISO
IBA
(PMID:21233288)
GO_REF:0000033
RGD
GO_Central
PMID:21233288 GO_REF:0000033 NCBI chr12:34,711,831...34,717,601
Ensembl chr12:34,711,810...34,717,081
JBrowse link
G Pheta2 PH domain containing endocytic trafficking adaptor 2 involved_in ISO
IBA
(PMID:21233288)
GO_REF:0000033
RGD
GO_Central
PMID:21233288 GO_REF:0000033 NCBI chr 7:115,735,499...115,741,988
Ensembl chr 7:113,857,249...113,861,871
JBrowse link
G Pi4k2a phosphatidylinositol 4-kinase type 2 alpha involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:240,902,804...240,929,234
Ensembl chr 1:240,902,855...240,929,337
JBrowse link
G Pi4k2b phosphatidylinositol 4-kinase type 2 beta involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:62,434,589...62,461,507
Ensembl chr14:58,220,437...58,248,673
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 IMP RGD PMID:12453151 RGD:2303129 NCBI chr18:22,119,677...22,203,546
Ensembl chr18:21,845,295...21,929,048
JBrowse link
G Plekha3 pleckstrin homology domain containing A3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:61,623,434...61,644,649
Ensembl chr 3:61,623,434...61,645,166
JBrowse link
G Plekhf1 pleckstrin homology and FYVE domain containing 1 involved_in ISO
IBA
(PMID:22115783)
GO_REF:0000033
RGD
GO_Central
PMID:22115783 GO_REF:0000033 NCBI chr 1:100,045,340...100,046,817
Ensembl chr 1:90,904,742...90,915,820
JBrowse link
G Plekhf2 pleckstrin homology and FYVE domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:28,888,358...28,905,350
Ensembl chr 5:24,090,688...24,106,601
JBrowse link
G Rab22a RAB22A, member RAS oncogene family involved_in ISO (PMID:11870209) RGD PMID:11870209 NCBI chr 3:162,459,727...162,506,129
Ensembl chr 3:162,459,726...162,506,137
JBrowse link
G Rab5a RAB5A, member RAS oncogene family involved_in IMP PMID:8043272 ParkinsonsUK-UCL PMID:8043272 RGD:2306269 NCBI chr 9:6,720,057...6,749,456
Ensembl chr 9:6,484,469...6,512,873
JBrowse link
G Rab5al1 Rab5a, member RAS oncogene family-like 1 involved_in IMP PMID:8043272 ParkinsonsUK-UCL PMID:8043272 RGD:2306269 NCBI chr14:68,332,360...68,334,470
Ensembl chr14:68,332,558...68,333,205
JBrowse link
G Rab5b RAB5B, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:7789520) RGD PMID:7789520 NCBI chr 7:1,693,971...1,712,936
Ensembl chr 7:1,109,454...1,128,268
JBrowse link
G Rab5c RAB5C, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:7789520) RGD PMID:7789520 NCBI chr10:86,142,872...86,166,449
Ensembl chr10:85,642,809...85,666,103
JBrowse link
G Rnf26 ring finger protein 26 involved_in ISO (PMID:27368102) RGD PMID:27368102 NCBI chr 8:53,351,388...53,353,586
Ensembl chr 8:44,454,292...44,457,331
JBrowse link
G Snx10 sorting nexin 10 involved_in ISO (PMID:17012226) RGD PMID:17012226 NCBI chr 4:81,943,262...82,007,667
Ensembl chr 4:80,612,669...80,676,996
JBrowse link
G Snx33 sorting nexin 33 involved_in ISO (PMID:21048941) RGD PMID:21048941 NCBI chr 8:66,213,133...66,224,926
Ensembl chr 8:57,317,161...57,327,538
JBrowse link
G Sqstm1 sequestosome 1 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:27368102)
UniProt
GO_Central
RGD
PMID:27368102 GO_REF:0000024 GO_REF:0000033 NCBI chr10:35,026,598...35,037,750
Ensembl chr10:34,525,519...34,536,673
JBrowse link
G Stx6 syntaxin 6 acts_upstream_of_or_within ISO (PMID:14668490) RGD PMID:14668490 NCBI chr13:69,882,647...69,928,895
Ensembl chr13:67,332,314...67,378,576
JBrowse link
G Tmem127 transmembrane protein 127 acts_upstream_of_or_within ISO MGI:5581337 (PMID:24334765) RGD PMID:24334765 NCBI chr 3:114,466,095...114,478,894
Ensembl chr 3:114,466,171...114,477,519
JBrowse link
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:30111582)
UniProt
Ensembl
RGD
PMID:30111582 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:151,635,825...151,743,931
Ensembl chr 5:151,635,868...151,743,784
JBrowse link
G Usp50 ubiquitin specific peptidase 50 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:134,465,469...134,488,859
Ensembl chr 3:114,011,702...114,035,476
JBrowse link
G Usp8 ubiquitin specific peptidase 8 involved_in ISO
IBA
(PMID:16771824)
GO_REF:0000033
RGD
GO_Central
PMID:16771824 GO_REF:0000033 NCBI chr 3:113,962,136...114,009,683
Ensembl chr 3:113,962,164...114,009,666
JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:44,684,129...44,698,568
Ensembl chr 8:44,684,127...44,698,568
JBrowse link
G Vps18 VPS18 core subunit of CORVET and HOPS complexes involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:18799622)
GO_REF:0000033
(PMID:14668490)
RGD
GO_Central
PMID:14668490 PMID:18799622 GO_REF:0000033 NCBI chr 3:126,733,276...126,744,130
Ensembl chr 3:106,279,425...106,291,964
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated involved_in ISO (PMID:23918659) RGD PMID:23918659 NCBI chr 1:143,633,167...143,656,228
Ensembl chr 1:134,223,949...134,246,970
JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A acts_upstream_of_or_within ISO MGI:1100499 (PMID:26720614) RGD PMID:26720614 NCBI chr19:51,838,411...51,858,639
Ensembl chr19:34,934,961...34,948,887
JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B acts_upstream_of_or_within ISO MGI:1890520 (PMID:10637304), (PMID:26720614) RGD PMID:10637304 PMID:26720614 NCBI chr13:23,421,758...23,446,848
Ensembl chr13:22,907,109...22,932,229
JBrowse link
G Washc1 WASH complex subunit 1 involved_in
acts_upstream_of_or_within
ISO (PMID:20175130)
(PMID:26965651)
RGD PMID:20175130 PMID:26965651 NCBI chr 9:113,169,730...113,179,829
Ensembl chr 9:105,722,899...105,733,009
JBrowse link
G Washc4 WASH complex subunit 4 involved_in ISO
IBA
(PMID:23676666)
GO_REF:0000033
RGD
GO_Central
PMID:23676666 GO_REF:0000033 NCBI chr 7:22,075,546...22,127,847
Ensembl chr 7:20,187,922...20,240,226
JBrowse link
G Washc5 WASH complex subunit 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:90,884,192...90,936,096
Ensembl chr 7:90,884,197...90,936,103
JBrowse link
extracellular exosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd34 CD34 molecule involved_in ISO
ISS
(PMID:21835908)
GO_REF:0000024
RGD
UniProt
PMID:21835908 GO_REF:0000024 NCBI chr13:109,008,786...109,029,317
Ensembl chr13:106,480,043...106,499,832
JBrowse link
Golgi vesicle budding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Golph3 golgi phosphoprotein 3 involved_in ISS
IBA
ISO
IEA
GO_REF:0000024
GO_REF:0000033
(PMID:19837035)
GO_REF:0000107
UniProt
GO_Central
RGD
Ensembl
PMID:19837035 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:61,348,030...61,376,051
Ensembl chr 2:61,348,030...61,376,049
JBrowse link
G Golph3l golgi phosphoprotein 3-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:183,151,941...183,183,094
Ensembl chr 2:183,153,301...183,183,083
JBrowse link
G Myo18a myosin XVIIIa involved_in IEA
ISO
GO_REF:0000107
(PMID:19837035)
Ensembl
RGD
PMID:19837035 GO_REF:0000107 NCBI chr10:63,152,303...63,253,543
Ensembl chr10:62,654,281...62,755,468
JBrowse link
G Prkci protein kinase C, iota IDA RGD PMID:12871960 RGD:724652 NCBI chr 2:114,250,398...114,310,784
Ensembl chr 2:112,321,929...112,382,352
JBrowse link
Golgi vesicle fusion to target membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkd2 NKD inhibitor of WNT signaling pathway 2 involved_in ISO (PMID:17553928) RGD PMID:17553928 NCBI chr 1:29,442,898...29,470,839
Ensembl chr 1:29,441,328...29,470,821
JBrowse link
G Rab8a RAB8A, member RAS oncogene family involved_in ISO
IEA
(PMID:17574030)
GO_REF:0000107
RGD
Ensembl
PMID:17574030 GO_REF:0000107 NCBI chr16:17,688,049...17,709,412
Ensembl chr16:17,654,034...17,675,678
JBrowse link
intralumenal vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rilp Rab interacting lysosomal protein involved_in ISO (PMID:17959629) RGD PMID:17959629 NCBI chr10:60,853,316...60,857,096
Ensembl chr10:60,355,278...60,358,781
JBrowse link
G Snx3 sorting nexin 3 involved_in ISO (PMID:18767904) RGD PMID:18767904 NCBI chr20:47,574,051...47,607,577
Ensembl chr20:45,992,720...46,025,379
JBrowse link
maintenance of granzyme B location in T cell secretory granule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srgn serglycin involved_in ISS
ISO
GO_REF:0000024
(PMID:16046402)
UniProt
RGD
PMID:16046402 GO_REF:0000024 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406
JBrowse link
maintenance of protease location in mast cell secretory granule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srgn serglycin involved_in ISS
ISO
GO_REF:0000024
(PMID:17010166)
UniProt
RGD
PMID:17010166 GO_REF:0000024 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406
JBrowse link
mast cell secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO MGI:1855968 (PMID:624833) RGD PMID:624833 NCBI chr17:93,225,509...93,427,650
Ensembl chr17:86,241,384...86,443,480
JBrowse link
G Srgn serglycin involved_in ISS
ISO
GO_REF:0000024
(PMID:15231821)
UniProt
RGD
PMID:15231821 GO_REF:0000024 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406
JBrowse link
melanosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 involved_in ISS
ISO
GO_REF:0000024
(PMID:29940187)
UniProt
RGD
PMID:29940187 GO_REF:0000024 NCBI chr 9:84,117,222...84,125,939
Ensembl chr 9:76,668,554...76,676,924
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 involved_in ISO
IBA
(PMID:23084991)
GO_REF:0000033
RGD
GO_Central
PMID:23084991 GO_REF:0000033 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268
JBrowse link
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 involved_in ISO
IBA
(PMID:23084991)
GO_REF:0000033
RGD
GO_Central
PMID:23084991 GO_REF:0000033 NCBI chr12:44,264,037...44,294,791
Ensembl chr12:44,264,037...44,294,632
JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in ISO (PMID:22511774), (PMID:23084991) RGD PMID:22511774 PMID:23084991 NCBI chr 1:4,946,193...4,961,003
Ensembl chr 1:4,945,036...4,960,934
JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in ISO (PMID:22511774), (PMID:23084991) RGD PMID:22511774 PMID:23084991 NCBI chr 1:151,595,153...151,675,492
Ensembl chr 1:142,182,556...142,262,924
JBrowse link
melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1m1 adaptor related protein complex 1 subunit mu 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:19841138)
Ensembl
RGD
PMID:19841138 GO_REF:0000107 NCBI chr16:17,620,910...17,636,431
Ensembl chr16:17,584,730...17,602,403
JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 involved_in
acts_upstream_of_or_within
ISO (PMID:11452004), (PMID:19841138)
(PMID:9931340)
RGD PMID:9931340 PMID:11452004 PMID:19841138 NCBI chr 2:27,331,241...27,535,683
Ensembl chr 2:25,600,040...25,800,935
JBrowse link
G Apoe apolipoprotein E involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:26387950)
Ensembl
UniProt
RGD
PMID:26387950 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:88,481,889...88,485,816
Ensembl chr 1:79,353,916...79,357,932
JBrowse link
G Asip agouti signaling protein involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
MGI:1855937 (PMID:9548375)
GO_REF:0000033
Ensembl
RGD
GO_Central
PMID:9548375 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171
JBrowse link
G Bace2 beta-secretase 2 involved_in ISO (PMID:23754390) RGD PMID:23754390 NCBI chr11:50,176,852...50,258,948
Ensembl chr11:36,707,458...36,789,546
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 acts_upstream_of_or_within ISO MGI:1857021 (PMID:15265785) RGD PMID:15265785 NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505
JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 acts_upstream_of_or_within ISO MGI:2449643 (PMID:11110696) RGD PMID:11110696 NCBI chr14:74,043,025...74,044,325
Ensembl chr14:74,043,015...74,044,531
JBrowse link
G Gpr143 G protein-coupled receptor 143 involved_in ISO
IBA
(PMID:19717472)
GO_REF:0000033
RGD
GO_Central
PMID:19717472 GO_REF:0000033 NCBI chr  X:22,002,914...22,027,720
Ensembl chr  X:22,002,914...22,027,715
JBrowse link
G Kif13a kinesin family member 13A involved_in ISO (PMID:19841138) RGD PMID:19841138 NCBI chr17:17,766,597...17,948,517
Ensembl chr17:17,766,597...17,943,615
JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO MGI:1855968|MGI:3620573 (PMID:16518687), (PMID:4634048) RGD PMID:4634048 PMID:16518687 NCBI chr17:93,225,509...93,427,650
Ensembl chr17:86,241,384...86,443,480
JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO
IBA
(PMID:29584722)
GO_REF:0000033
RGD
GO_Central
PMID:29584722 GO_REF:0000033 NCBI chr 9:66,563,747...66,657,873
Ensembl chr 9:66,563,727...66,657,868
JBrowse link
G Pmel premelanosome protein involved_in ISO
IBA
(PMID:11694580)
GO_REF:0000033
RGD
GO_Central
PMID:11694580 GO_REF:0000033 NCBI chr 7:1,138,202...1,148,735
Ensembl chr 7:1,138,586...1,148,746
JBrowse link
G Rab29 RAB29, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:45,859,930...45,865,468
Ensembl chr13:43,307,775...43,313,417
JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:151,595,153...151,675,492
Ensembl chr 1:142,182,556...142,262,924
JBrowse link
G Shroom2 shroom family member 2 involved_in ISO
ISS
(PMID:16987870)
GO_REF:0000024
RGD
UniProt
PMID:16987870 GO_REF:0000024 NCBI chr  X:21,812,469...21,983,724
Ensembl chr  X:21,812,469...21,984,153
JBrowse link
G Tyrp1 tyrosinase-related protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1855960 (PMID:9548375)
GO_Central
RGD
PMID:9548375 GO_REF:0000033 NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516
JBrowse link
multivesicular body assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab11a RAB11a, member RAS oncogene family involved_in ISO (PMID:15634213) RGD PMID:15634213 NCBI chr 8:65,223,698...65,246,461
Ensembl chr 8:65,222,949...65,246,525
JBrowse link
G Snf8 SNF8 subunit of ESCRT-II involved_in ISS
ISO
GO_REF:0000024
(PMID:38423010)
UniProt
RGD
PMID:38423010 GO_REF:0000024 NCBI chr10:80,984,337...80,996,724
Ensembl chr10:80,984,363...80,996,734
JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in IEA
ISO
GO_REF:0000107
(PMID:21238931)
Ensembl
RGD
PMID:21238931 GO_REF:0000107 NCBI chr19:51,838,411...51,858,639
Ensembl chr19:34,934,961...34,948,887
JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B involved_in ISO (PMID:21238931) RGD PMID:21238931 NCBI chr13:23,421,758...23,446,848
Ensembl chr13:22,907,109...22,932,229
JBrowse link
multivesicular body organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab27a RAB27A, member RAS oncogene family involved_in ISO (PMID:23092844) RGD PMID:23092844 NCBI chr 8:82,663,373...82,717,267
Ensembl chr 8:73,782,694...73,847,829
JBrowse link
multivesicular body-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp3 charged multivesicular body protein 3 involved_in ISO (PMID:16554368) RGD PMID:16554368 NCBI chr 4:105,134,860...105,180,862
Ensembl chr 4:103,576,515...103,623,959
JBrowse link
negative regulation of cargo loading into COPII-coated vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Insig1 insulin induced gene 1 involved_in ISO (PMID:15899885) RGD PMID:15899885 NCBI chr 4:8,049,339...8,057,812
Ensembl chr 4:7,315,495...7,323,952
JBrowse link
G Sar1a secretion associated, Ras related GTPase 1A acts_upstream_of_or_within ISO (PMID:23580231) RGD PMID:23580231 NCBI chr20:30,166,310...30,178,718
Ensembl chr20:29,623,553...29,635,935
JBrowse link
negative regulation of intralumenal vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO
IEA
(PMID:26911690)
GO_REF:0000107
RGD
Ensembl
PMID:26911690 GO_REF:0000107 NCBI chr 1:51,236,410...52,430,242
Ensembl chr 1:48,690,556...49,882,555
JBrowse link
negative regulation of SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd27 ankyrin repeat domain 27 involved_in ISO (PMID:24856514) RGD PMID:24856514 NCBI chr 1:88,251,216...88,303,615
Ensembl chr 1:88,251,226...88,303,615
JBrowse link
G Prrt2 proline-rich transmembrane protein 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:29056747)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:29056747 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:181,625,243...181,628,833
Ensembl chr 1:181,604,545...181,628,850
JBrowse link
G Stxbp1 syntaxin binding protein 1 involved_in TAS PMID:12093152 ParkinsonsUK-UCL PMID:12093152 RGD:730238 NCBI chr 3:36,474,428...36,536,120
Ensembl chr 3:16,076,391...16,138,369
JBrowse link
G Trim9 tripartite motif-containing 9 IDA RGD PMID:11524423 RGD:631246 NCBI chr 6:88,756,824...88,856,588
Ensembl chr 6:88,757,303...88,856,542
JBrowse link
negative regulation of vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coro1a coronin 1A acts_upstream_of_or_within ISO MGI:3778894 (PMID:24270184) RGD PMID:24270184 NCBI chr 1:190,726,129...190,731,133
Ensembl chr 1:181,295,562...181,300,534
JBrowse link
G Syt4 synaptotagmin 4 involved_in IDA PMID:20688915 RGD
ParkinsonsUK-UCL
PMID:18508778 PMID:20688915 RGD:7241021, RGD:11535104 NCBI chr18:23,036,973...23,046,380
Ensembl chr18:23,038,378...23,046,332
JBrowse link
G Tbc1d4 TBC1 domain family, member 4 IMP RGD PMID:21454690 RGD:7247577 NCBI chr15:84,670,756...84,848,876
Ensembl chr15:78,257,121...78,434,265
JBrowse link
phagolysosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coro1a coronin 1A involved_in ISO (PMID:12132654) RGD PMID:12132654 NCBI chr 1:190,726,129...190,731,133
Ensembl chr 1:181,295,562...181,300,534
JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:2155422 (PMID:12743369) RGD PMID:12743369 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G P2rx7 purinergic receptor P2X 7 acts_upstream_of_or_within ISO MGI:3606250 (PMID:11544318) RGD PMID:11544318 NCBI chr12:39,550,531...39,594,984
Ensembl chr12:33,879,745...33,934,619
JBrowse link
G Rab14 RAB14, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:38,899,430...38,920,572
Ensembl chr 3:18,501,963...18,523,172
JBrowse link
G Srpx sushi-repeat-containing protein, X-linked involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:3706175 (PMID:19368996)
GO_Central
RGD
PMID:19368996 GO_REF:0000033 NCBI chr  X:12,676,984...12,751,296
Ensembl chr  X:12,566,645...12,747,882
JBrowse link
phagosome-lysosome docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:26450516) RGD PMID:26450516 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
JBrowse link
phagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ARF like GTPase 8B involved_in ISS
ISO
GO_REF:0000024
(PMID:21802320)
UniProt
RGD
PMID:21802320 GO_REF:0000024 NCBI chr 4:143,304,597...143,348,580
Ensembl chr 4:141,748,587...141,792,596
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:26450516) RGD PMID:26450516 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO
IBA
(PMID:28779020)
GO_REF:0000033
RGD
GO_Central
PMID:28779020 GO_REF:0000033 NCBI chr 9:66,563,747...66,657,873
Ensembl chr 9:66,563,727...66,657,868
JBrowse link
G Pla2g5 phospholipase A2, group V involved_in ISS
ISO
GO_REF:0000024
(PMID:19342668)
UniProt
RGD
PMID:19342668 GO_REF:0000024 NCBI chr 5:156,324,628...156,393,065
Ensembl chr 5:151,041,340...151,062,658
JBrowse link
G Rab20 RAB20, member RAS oncogene family involved_in ISO (PMID:21255211) RGD PMID:21255211 NCBI chr16:84,721,427...84,745,610
Ensembl chr16:78,019,337...78,043,529
JBrowse link
G Rab34 RAB34, member RAS oncogene family involved_in ISO
IBA
IEA
ISS
(PMID:23197834)
GO_REF:0000033
(PMID:21255211)
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:21255211 PMID:23197834 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:63,581,542...63,585,608
Ensembl chr10:63,083,338...63,087,538
JBrowse link
G Rab39a RAB39A, member RAS oncogene family involved_in ISO
IBA
(PMID:21255211)
GO_REF:0000033
RGD
GO_Central
PMID:21255211 GO_REF:0000033 NCBI chr 8:54,088,246...54,105,867
Ensembl chr 8:54,088,129...54,106,483
JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO
IBA
ISS
(PMID:21255211)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:21255211 GO_REF:0000024 GO_REF:0000033 NCBI chr 4:122,019,281...122,068,067
Ensembl chr 4:120,461,963...120,506,889
JBrowse link
G Rab7b Rab7b, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:45,673,396...45,699,798
Ensembl chr13:43,121,226...43,147,581
JBrowse link
G Syt7 synaptotagmin 7 involved_in ISS
ISO
GO_REF:0000024
(PMID:16982801)
UniProt
RGD
PMID:16982801 GO_REF:0000024 NCBI chr 1:216,456,148...216,518,718
Ensembl chr 1:207,031,592...207,089,026
JBrowse link
G Tmem175 transmembrane protein 175 involved_in ISS
ISO
GO_REF:0000024
(PMID:26317472)
UniProt
RGD
PMID:26317472 GO_REF:0000024 NCBI chr14:1,073,410...1,089,764
Ensembl chr14:1,073,523...1,089,819
JBrowse link
phagosome-lysosome fusion involved in apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO MGI:4377985 (PMID:26284655) RGD PMID:26284655 NCBI chr 3:129,453,118...129,526,469
Ensembl chr 3:109,008,135...109,072,911
JBrowse link
pigment granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2158305 (PMID:8758925)
Ensembl
RGD
PMID:8758925 GO_REF:0000107 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO MGI:1855968 (PMID:1278263) RGD PMID:1278263 NCBI chr17:93,225,509...93,427,650
Ensembl chr17:86,241,384...86,443,480
JBrowse link
platelet alpha granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nbeal2 neurobeachin-like 2 acts_upstream_of_or_within ISO MGI:4461705|MGI:5007262 (PMID:23861251), (PMID:23863626), (PMID:25258341) RGD PMID:23861251 PMID:23863626 PMID:25258341 NCBI chr 8:119,481,608...119,511,997
Ensembl chr 8:110,599,389...110,633,707
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated involved_in ISO (PMID:16123220)
(PMID:25947942)
RGD PMID:16123220 PMID:25947942 NCBI chr 1:143,633,167...143,656,228
Ensembl chr 1:134,223,949...134,246,970
JBrowse link
G Zfp385a zinc finger protein 385A acts_upstream_of_or_within ISO MGI:3510440 (PMID:11927637) RGD PMID:11927637 NCBI chr 7:134,448,914...134,475,548
Ensembl chr 7:134,448,921...134,475,548
JBrowse link
platelet dense granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 involved_in ISO (PMID:15163665) RGD PMID:15163665 NCBI chr 5:72,473,676...72,596,563
Ensembl chr 5:67,681,297...67,801,170
JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO (PMID:9931340) RGD PMID:9931340 NCBI chr 2:27,331,241...27,535,683
Ensembl chr 2:25,600,040...25,800,935
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 acts_upstream_of_or_within ISO MGI:1857021 (PMID:15265785) RGD PMID:15265785 NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505
JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1856628 (PMID:1936982)
GO_Central
RGD
PMID:1936982 GO_REF:0000033 NCBI chr17:19,685,218...19,776,668
Ensembl chr17:19,685,215...19,776,661
JBrowse link
G Rab38 RAB38, member RAS oncogene family IMP RGD PMID:18983523 RGD:2324691 NCBI chr 1:151,595,153...151,675,492
Ensembl chr 1:142,182,556...142,262,924
JBrowse link
G Slc35d3 solute carrier family 35, member D3 involved_in ISO (PMID:17062724), (PMID:22611153) RGD PMID:17062724 PMID:22611153 NCBI chr 1:16,389,308...16,392,780
Ensembl chr 1:14,569,687...14,573,159
JBrowse link
positive regulation of autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Znrf1 zinc and ring finger 1 involved_in ISO FB:FBgn0029911 (PMID:38360932) RGD PMID:38360932 NCBI chr19:56,403,816...56,490,901
Ensembl chr19:39,496,527...39,580,969
JBrowse link
G Znrf2 zinc and ring finger 2 involved_in ISO FB:FBgn0029911 (PMID:38360932) RGD PMID:38360932 NCBI chr 4:85,274,626...85,358,083
Ensembl chr 4:83,949,309...84,027,818
JBrowse link
positive regulation of endosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Synj1 synaptojanin 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:22511594)
Ensembl
RGD
PMID:22511594 GO_REF:0000107 NCBI chr11:43,678,709...43,755,526
Ensembl chr11:30,192,629...30,269,220
JBrowse link
positive regulation of extracellular exosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdcd6ip programmed cell death 6 interacting protein involved_in ISO (PMID:22660413) RGD PMID:22660413 NCBI chr 8:122,469,223...122,524,993
Ensembl chr 8:113,590,998...113,646,773
JBrowse link
G Sdc1 syndecan 1 involved_in ISO (PMID:22660413) RGD PMID:22660413 NCBI chr 6:37,282,041...37,304,503
Ensembl chr 6:31,562,739...31,585,264
JBrowse link
G Sdc4 syndecan 4 involved_in ISO (PMID:22660413) RGD PMID:22660413 NCBI chr 3:173,574,239...173,592,923
Ensembl chr 3:153,154,896...153,173,580
JBrowse link
G Sdcbp syndecan binding protein involved_in ISO (PMID:22660413) RGD PMID:22660413 NCBI chr 5:24,245,279...24,314,712
Ensembl chr 5:19,489,961...19,527,572
JBrowse link
positive regulation of secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcg1 ATP binding cassette subfamily G member 1 IMP RGD PMID:29540530 RGD:41404656 NCBI chr20:9,128,056...9,184,312
Ensembl chr20:9,126,687...9,182,948
JBrowse link
G Osbp oxysterol binding protein IMP RGD PMID:29540530 RGD:41404656 NCBI chr 1:218,313,455...218,343,263
Ensembl chr 1:208,887,895...208,918,506
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 IMP RGD PMID:15039777 RGD:10045958 NCBI chr 7:10,493,199...10,502,957
Ensembl chr 7:9,842,574...9,852,397
JBrowse link
positive regulation of SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snca synuclein alpha involved_in IEA
ISO
GO_REF:0000107
(PMID:20798282)
Ensembl
RGD
PMID:20798282 GO_REF:0000107 NCBI chr 4:91,026,474...91,127,444
Ensembl chr 4:89,696,420...89,796,262
JBrowse link
positive regulation of synaptic vesicle fusion to presynaptic active zone membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rims1 regulating synaptic membrane exocytosis 1 involved_in NAS PMID:9252191 UniProt PMID:9252191 RGD:633897 NCBI chr 9:24,696,959...25,196,404
Ensembl chr 9:24,698,854...25,196,631
JBrowse link
positive regulation of vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 involved_in IEA
ISO
GO_REF:0000107
(PMID:2138016)
Ensembl
RGD
PMID:2138016 GO_REF:0000107 NCBI chr 1:227,287,713...227,306,739
Ensembl chr 1:217,861,175...217,877,343
JBrowse link
G Anxa2 annexin A2 involved_in ISO (PMID:2138016) RGD PMID:2138016 NCBI chr 8:78,986,252...79,022,638
Ensembl chr 8:70,105,253...70,141,658
JBrowse link
G C2cd5 C2 calcium-dependent domain containing 5 involved_in ISO
IBA
(PMID:21907143)
GO_REF:0000033
RGD
GO_Central
PMID:21907143 GO_REF:0000033 NCBI chr 4:177,700,515...177,790,576
Ensembl chr 4:175,969,545...176,055,558
JBrowse link
G Doc2b double C2 domain beta involved_in IDA PMID:18596155 UniProt PMID:18596155 RGD:8554556 NCBI chr10:61,126,295...61,151,533
Ensembl chr10:60,628,029...60,653,267
JBrowse link
G Kif5b kinesin family member 5B IMP RGD PMID:24203699 RGD:11059541 NCBI chr17:56,185,386...56,222,990
Ensembl chr17:51,489,944...51,527,508
JBrowse link
G Pla2g4a phospholipase A2 group 4A IMP RGD PMID:17148545 RGD:1642447 NCBI chr13:64,427,921...64,572,352
Ensembl chr13:61,877,813...62,022,266
JBrowse link
G Syt1 synaptotagmin 1 involved_in IDA PMID:20688915 RGD
ParkinsonsUK-UCL
PMID:18508778 PMID:20688915 RGD:7241021, RGD:11535104 NCBI chr 7:45,699,649...46,244,460
Ensembl chr 7:43,815,785...44,357,803
JBrowse link
G Syt3 synaptotagmin 3 involved_in IDA
IBA
GO_REF:0000033 GO_Central
RGD
PMID:18508778 GO_REF:0000033, RGD:7241021 NCBI chr 1:94,880,835...94,895,518
Ensembl chr 1:94,881,247...94,895,246
JBrowse link
G Syt9 synaptotagmin 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:170,687,666...170,868,146
Ensembl chr 1:161,275,734...161,455,007
JBrowse link
proacrosomal vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kiaa0319l KIAA0319 like acts_upstream_of_or_within ISO MGI:6111779 (PMID:29991750) RGD PMID:29991750 NCBI chr 5:144,332,242...144,425,182
Ensembl chr 5:139,046,143...139,140,715
JBrowse link
G Sox30 SRY-box transcription factor 30 involved_in ISO (PMID:29866902) RGD PMID:29866902 NCBI chr10:30,918,707...30,948,415
Ensembl chr10:30,418,473...30,446,453
JBrowse link
regulation of calcium-dependent activation of synaptic vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1b calcium voltage-gated channel subunit alpha1 B involved_in EXP
IDA
PMID:7832825 SynGO PMID:7832825 PMID:7832825 RGD:13792530, RGD:13792530 NCBI chr 3:27,779,133...27,944,292
Ensembl chr 3:7,380,922...7,546,091
JBrowse link
G Erc1 ELKS/RAB6-interacting/CAST family member 1 involved_in ISO (PMID:25209271) RGD PMID:25209271 NCBI chr 4:152,763,664...153,055,724
Ensembl chr 4:152,767,419...153,055,639
JBrowse link
G Erc2 ELKS/RAB6-interacting/CAST family member 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:25209271)
Ensembl
RGD
PMID:25209271 GO_REF:0000107 NCBI chr16:2,819,399...3,680,258
Ensembl chr16:2,848,620...3,670,776
JBrowse link
G Prrt2 proline-rich transmembrane protein 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:27052163)
Ensembl
RGD
PMID:27052163 GO_REF:0000107 NCBI chr 1:181,625,243...181,628,833
Ensembl chr 1:181,604,545...181,628,850
JBrowse link
G Rimbp2 RIMS binding protein 2 involved_in ISO (PMID:27671655) RGD PMID:27671655 NCBI chr12:33,383,646...33,582,259
Ensembl chr12:27,747,980...27,956,763
JBrowse link
G Rims1 regulating synaptic membrane exocytosis 1 involved_in ISO (PMID:21241895) RGD PMID:21241895 NCBI chr 9:24,696,959...25,196,404
Ensembl chr 9:24,698,854...25,196,631
JBrowse link
G Rims2 regulating synaptic membrane exocytosis 2 involved_in ISO (PMID:21241895) RGD PMID:21241895 NCBI chr 7:70,248,104...70,759,134
Ensembl chr 7:70,243,872...70,757,491
JBrowse link
regulation of cargo loading into COPII-coated vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sar1a secretion associated, Ras related GTPase 1A acts_upstream_of_or_within ISO (PMID:19966784) RGD PMID:19966784 NCBI chr20:30,166,310...30,178,718
Ensembl chr20:29,623,553...29,635,935
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:4440619|MGI:4440621 (PMID:19966784) RGD PMID:19966784 NCBI chr 2:221,236,897...221,306,986
Ensembl chr 2:218,562,676...218,632,699
JBrowse link
regulation of COPII vesicle coating term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mapk15 mitogen-activated protein kinase 15 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:24618899)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:24618899 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:109,575,619...109,595,339
Ensembl chr 7:107,694,964...107,714,645
JBrowse link
G Preb prolactin regulatory element binding involved_in IEA
ISO
IBA
GO_REF:0000104
(PMID:32358066)
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:32358066 GO_REF:0000033 GO_REF:0000104 NCBI chr 6:31,138,757...31,142,544
Ensembl chr 6:25,418,776...25,422,590
JBrowse link
G Sar1b secretion associated, Ras related GTPase 1B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:36,525,365...36,555,009
Ensembl chr10:36,024,382...36,054,066
JBrowse link
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor involved_in ISO (PMID:17005010) RGD PMID:17005010 NCBI chr 3:29,627,779...29,662,925
Ensembl chr 3:9,229,687...9,264,273
JBrowse link
regulation of endosomal vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sphk1 sphingosine kinase 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:27806293)
UniProt
RGD
PMID:27806293 GO_REF:0000024 NCBI chr10:102,257,413...102,263,086
Ensembl chr10:101,758,711...101,764,240
JBrowse link
regulation of endosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:25588840) RGD PMID:25588840 NCBI chr19:13,411,227...13,446,129
Ensembl chr19:13,405,501...13,440,384
JBrowse link
regulation of extracellular exosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdcd6ip programmed cell death 6 interacting protein involved_in ISO (PMID:24105262) RGD PMID:24105262 NCBI chr 8:122,469,223...122,524,993
Ensembl chr 8:113,590,998...113,646,773
JBrowse link
G Stam signal transducing adaptor molecule involved_in ISO (PMID:24105262) RGD PMID:24105262 NCBI chr17:77,120,235...77,166,173
Ensembl chr17:77,120,158...77,166,467
JBrowse link
G Tsg101 tumor susceptibility 101 involved_in IEA
ISO
GO_REF:0000107
(PMID:24105262)
Ensembl
RGD
PMID:24105262 GO_REF:0000107 NCBI chr 1:106,549,035...106,578,859
Ensembl chr 1:97,410,848...97,442,554
JBrowse link
regulation of melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in ISO (PMID:18697795) RGD PMID:18697795 NCBI chr  X:22,002,914...22,027,720
Ensembl chr  X:22,002,914...22,027,715
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (PMID:24769727) RGD PMID:24769727 NCBI chr 3:49,624,028...49,754,323
Ensembl chr 3:29,218,301...29,345,157
JBrowse link
regulation of SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Septin8 septin 8 involved_in IDA PMID:19196426 UniProt PMID:19196426 RGD:13702278 NCBI chr10:38,185,454...38,214,502
Ensembl chr10:37,684,639...37,713,174
JBrowse link
G Stxbp6 syntaxin binding protein 6 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:61,920,756...62,157,405
Ensembl chr 6:61,920,756...62,158,024
JBrowse link
regulation of synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc2a4 solute carrier family 2 member 4 involved_in IDA
IMP
PMID:28111082 SynGO PMID:28111082 PMID:28111082 RGD:13702195, RGD:13702195 NCBI chr10:55,164,721...55,170,289
Ensembl chr10:54,666,015...54,671,565
JBrowse link
regulation of synaptic vesicle fusion to presynaptic active zone membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cplx1 complexin 1 involved_in IBA
ISO
GO_REF:0000033
(PMID:11163241)
GO_Central
RGD
PMID:11163241 GO_REF:0000033 NCBI chr14:1,329,073...1,360,781 JBrowse link
G Cplx2 complexin 2 involved_in IBA
ISO
GO_REF:0000033
(PMID:11163241)
GO_Central
RGD
PMID:11163241 GO_REF:0000033 NCBI chr17:10,224,673...10,297,974
Ensembl chr17:10,222,347...10,293,855
JBrowse link
G Cplx3 complexin 3 involved_in IBA
ISO
GO_REF:0000033
(PMID:27239031)
GO_Central
RGD
PMID:27239031 GO_REF:0000033 NCBI chr 8:66,899,438...66,906,200
Ensembl chr 8:58,003,535...58,010,297
JBrowse link
G Cplx4 complexin 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:59,481,360...59,504,716
Ensembl chr18:59,481,986...59,497,778
JBrowse link
G Grik5 glutamate ionotropic receptor kainate type subunit 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2668206 (PMID:12533602)
Ensembl
RGD
PMID:12533602 GO_REF:0000107 NCBI chr 1:89,733,736...89,795,769
Ensembl chr 1:80,605,892...80,667,125
JBrowse link
G Rab3a RAB3A, member RAS oncogene family involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
GO_REF:0000024
MGI:3762127 (PMID:11359932)
(PMID:9194562)
GO_REF:0000107
ParkinsonsUK-UCL
RGD
Ensembl
PMID:9194562 PMID:11359932 GO_REF:0000024 GO_REF:0000107 NCBI chr16:18,684,185...18,688,297
Ensembl chr16:18,684,188...18,688,336
JBrowse link
G Vamp1 vesicle-associated membrane protein 1 involved_in ISO (PMID:21282288) RGD PMID:21282288 NCBI chr 4:159,698,894...159,705,582
Ensembl chr 4:158,012,663...158,019,349
JBrowse link
regulation of synaptic vesicle lumen acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc9a6 solute carrier family 9 member A6 involved_in IEP
IDA
IMP
PMID:33372133 SynGO PMID:33372133 PMID:33372133 PMID:33372133 RGD:405650253, RGD:405650253, RGD:405650253 NCBI chr  X:134,430,677...134,486,747
Ensembl chr  X:134,420,756...134,485,375
JBrowse link
regulation of vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slamf1 signaling lymphocytic activation molecule family member 1 acts_upstream_of_or_within ISO MGI:3044919 (PMID:22493499) RGD PMID:22493499 NCBI chr13:86,802,708...86,837,890
Ensembl chr13:84,270,316...84,305,497
JBrowse link
G Stxbp1 syntaxin binding protein 1 IDA RGD PMID:24532794 RGD:12903988 NCBI chr 3:36,474,428...36,536,120
Ensembl chr 3:16,076,391...16,138,369
JBrowse link
G Syt1 synaptotagmin 1 involved_in IMP PMID:24001110 DisProt PMID:24001110 RGD:407429997 NCBI chr 7:45,699,649...46,244,460
Ensembl chr 7:43,815,785...44,357,803
JBrowse link
G Syt4 synaptotagmin 4 involved_in IMP
ISO
PMID:20303854
(PMID:19136969)
RGD PMID:19136969 PMID:20303854 RGD:11541109 NCBI chr18:23,036,973...23,046,380
Ensembl chr18:23,038,378...23,046,332
JBrowse link
secretory granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Syt4 synaptotagmin 4 involved_in IMP PMID:16618809 ParkinsonsUK-UCL PMID:16618809 RGD:11535113 NCBI chr18:23,036,973...23,046,380
Ensembl chr18:23,038,378...23,046,332
JBrowse link
secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 acts_upstream_of_or_within ISO (PMID:18511498) RGD PMID:18511498 NCBI chr 4:85,812,784...85,824,964
Ensembl chr 4:84,482,512...84,494,690
JBrowse link
G Creb1 cAMP responsive element binding protein 1 acts_upstream_of_or_within ISO MGI:4999627 (PMID:21408140) RGD PMID:21408140 NCBI chr 9:73,397,333...73,466,339
Ensembl chr 9:65,903,547...65,970,816
JBrowse link
G Kcne1 potassium voltage-gated channel subfamily E regulatory subunit 1 involved_in ISO MGI:1857442 (PMID:11889581) RGD PMID:11889581 NCBI chr11:45,066,875...45,080,024
Ensembl chr11:31,580,742...31,593,901
JBrowse link
G Mta1 metastasis associated 1 involved_in IDA PMID:10933808 UniProt PMID:10933808 RGD:8554658 NCBI chr 6:137,999,845...138,038,696
Ensembl chr 6:132,178,853...132,217,641
JBrowse link
G Serpine2 serpin family E member 2 acts_upstream_of_or_within
involved_in
IDA
ISO
IEA
(PMID:16319172)
GO_REF:0000107
RGD
Ensembl
PMID:16319172 PMID:16319172 GO_REF:0000107, RGD:2317924 NCBI chr 9:88,573,138...88,637,252
Ensembl chr 9:81,124,804...81,188,826
JBrowse link
G Srgn serglycin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406
JBrowse link
SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cltrn collectrin, amino acid transport regulator involved_in ISO
IEA
(PMID:16330323)
GO_REF:0000107
RGD
Ensembl
PMID:16330323 GO_REF:0000107 NCBI chr  X:33,993,825...34,027,124
Ensembl chr  X:30,361,967...30,395,349
JBrowse link
G Snap25 synaptosome associated protein 25 involved_in IMP PMID:12680753
PMID:9671503
CAFA PMID:12680753 PMID:9671503 RGD:12793015, RGD:12793053 NCBI chr 3:144,494,579...144,576,449
Ensembl chr 3:124,041,898...124,123,760
JBrowse link
G Snca synuclein alpha involved_in IEA
ISO
GO_REF:0000107
(PMID:25246573)
(PMID:20798282)
Ensembl
RGD
PMID:20798282 PMID:25246573 GO_REF:0000107 NCBI chr 4:91,026,474...91,127,444
Ensembl chr 4:89,696,420...89,796,262
JBrowse link
G Stx1a syntaxin 1A involved_in IMP PMID:12680753
PMID:9671503
CAFA PMID:12680753 PMID:9671503 RGD:12793015, RGD:12793053 NCBI chr12:27,278,517...27,306,547
Ensembl chr12:21,641,969...21,669,930
JBrowse link
G Stx4 syntaxin 4 involved_in ISO (PMID:21151919) RGD PMID:21151919 NCBI chr 1:191,880,549...191,890,333
Ensembl chr 1:182,451,117...182,459,979
JBrowse link
G Stxbp1 syntaxin binding protein 1 involved_in ISO (PMID:23091057) RGD PMID:23091057 NCBI chr 3:36,474,428...36,536,120
Ensembl chr 3:16,076,391...16,138,369
JBrowse link
G Stxbp6 syntaxin binding protein 6 acts_upstream_of ISO
ISS
(PMID:12145319)
GO_REF:0000024
RGD
ParkinsonsUK-UCL
PMID:12145319 GO_REF:0000024 NCBI chr 6:61,920,756...62,157,405
Ensembl chr 6:61,920,756...62,158,024
JBrowse link
G Uvrag UV radiation resistance associated involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:24550300)
GO_Central
RGD
PMID:24550300 GO_REF:0000033 NCBI chr 1:162,596,514...162,854,348
Ensembl chr 1:153,185,395...153,442,136
JBrowse link
G Vamp1 vesicle-associated membrane protein 1 involved_in ISO
IBA
(PMID:21151919)
GO_REF:0000033
RGD
GO_Central
PMID:21151919 GO_REF:0000033 NCBI chr 4:159,698,894...159,705,582
Ensembl chr 4:158,012,663...158,019,349
JBrowse link
G Vamp2 vesicle-associated membrane protein 2 involved_in IMP
IBA
PMID:9671503
GO_REF:0000033
PMID:12680753
GO_Central PMID:9671503 PMID:12680753 GO_REF:0000033, RGD:12793053, RGD:12793015 NCBI chr10:54,292,423...54,296,657
Ensembl chr10:53,793,923...53,797,809
JBrowse link
G Vamp3 vesicle-associated membrane protein 3 involved_in ISO
IBA
(PMID:21151919)
GO_REF:0000033
RGD
GO_Central
PMID:21151919 GO_REF:0000033 NCBI chr 5:166,780,927...166,791,522
Ensembl chr 5:161,498,109...161,508,751
JBrowse link
G Vamp4 vesicle-associated membrane protein 4 involved_in ISO
IBA
(PMID:21151919)
GO_REF:0000033
RGD
GO_Central
PMID:21151919 GO_REF:0000033 NCBI chr13:77,453,135...77,475,909
Ensembl chr13:74,919,880...74,933,686
JBrowse link
G Vamp7 vesicle-associated membrane protein 7 involved_in ISO (PMID:21151919) RGD PMID:21151919 NCBI chr12:21,842,206...21,958,556
Ensembl chr12:16,728,524...16,764,097
JBrowse link
G Vamp8 vesicle-associated membrane protein 8 involved_in ISO
IBA
(PMID:21151919)
GO_REF:0000033
RGD
GO_Central
PMID:21151919 GO_REF:0000033 NCBI chr 4:106,000,570...106,011,081
Ensembl chr 4:104,442,393...104,452,897
JBrowse link
synaptic vesicle budding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arf1 ARF GTPase 1 IMP RGD PMID:9590176 RGD:9684955 NCBI chr10:43,997,983...44,014,461
Ensembl chr10:43,997,986...44,014,434
JBrowse link
synaptic vesicle budding from endosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 involved_in IMP
IDA
PMID:22539861 SynGO PMID:22539861 PMID:22539861 RGD:12050120, RGD:12050120 NCBI chr19:54,654,101...54,740,586
Ensembl chr19:37,744,633...37,829,167
JBrowse link
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 involved_in ISO (PMID:20203623) RGD PMID:20203623 NCBI chr  X:30,572,746...30,598,961
Ensembl chr  X:30,572,751...30,597,262
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in IDA
ISO
IBA
IMP
PMID:22539861
(PMID:11588176)
GO_REF:0000033
RGD
GO_Central
PMID:11588176 PMID:22539861 PMID:22539861 GO_REF:0000033, RGD:12050120, RGD:12050120 NCBI chr 7:9,620,909...9,656,350
Ensembl chr 7:8,970,291...9,005,643
JBrowse link
G Btbd8 BTB domain containing 8 involved_in ISO (PMID:29262337) RGD PMID:29262337 NCBI chr14:2,265,187...2,338,426
Ensembl chr14:2,266,454...2,334,393
JBrowse link
synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnm1 dynamin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:15,604,782...15,648,654
Ensembl chr 3:15,604,784...15,648,538
JBrowse link
G Dnm2 dynamin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:28,254,344...28,336,297
Ensembl chr 8:19,978,400...20,060,157
JBrowse link
G Dnm3 dynamin 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:76,892,381...77,371,346
Ensembl chr13:74,359,213...74,838,108
JBrowse link
G Mx1 MX dynamin like GTPase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:50,269,056...50,294,699
Ensembl chr11:36,799,660...36,823,507
JBrowse link
G Mx2 MX dynamin like GTPase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:50,375,101...50,399,373
Ensembl chr11:36,906,111...36,930,342
JBrowse link
synaptic vesicle coating term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cltb clathrin, light chain B involved_in NAS PMID:3563513 UniProt PMID:3563513 RGD:70686 NCBI chr17:10,006,416...10,024,278
Ensembl chr17:10,001,513...10,019,169
JBrowse link
synaptic vesicle fusion to presynaptic active zone membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prrt2 proline-rich transmembrane protein 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:27052163)
UniProt
Ensembl
RGD
PMID:27052163 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:181,625,243...181,628,833
Ensembl chr 1:181,604,545...181,628,850
JBrowse link
G Snap23 synaptosome associated protein 23 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:127,966,184...127,999,929
Ensembl chr 3:107,514,131...107,544,320
JBrowse link
G Snap25 synaptosome associated protein 25 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:144,494,579...144,576,449
Ensembl chr 3:124,041,898...124,123,760
JBrowse link
G Snap29 synaptosome associated protein 29 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:97,082,721...97,113,195
Ensembl chr11:83,578,489...83,608,958
JBrowse link
G Snap47 synaptosome associated protein 47 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:44,192,886...44,234,435
Ensembl chr10:44,191,218...44,234,424
JBrowse link
G Snapin SNAP-associated protein acts_upstream_of_or_within ISO MGI:3608768 (PMID:19217378) RGD PMID:19217378 NCBI chr 2:175,971,575...175,974,164
Ensembl chr 2:175,971,257...175,974,231
JBrowse link
G Stx11 syntaxin 11 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:9,111,216...9,140,227
Ensembl chr 1:7,289,976...7,320,164
JBrowse link
G Stx1b syntaxin 1B involved_in ISO
IBA
IEA
(PMID:24587181)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:24587181 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:182,415,544...182,434,385
Ensembl chr 1:182,415,546...182,441,280
JBrowse link
G Stx2 syntaxin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:33,315,447...33,350,788
Ensembl chr12:27,689,819...27,714,751
JBrowse link
synaptic vesicle lumen acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap1 ATPase H+ transporting accessory protein 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:28793259)
Ensembl
RGD
PMID:28793259 GO_REF:0000107 NCBI chr  X:157,231,243...157,238,323
Ensembl chr  X:152,079,865...152,087,034
JBrowse link
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:28793259)
Ensembl
RGD
PMID:28793259 GO_REF:0000107 NCBI chr  X:12,856,708...12,883,670
Ensembl chr  X:10,183,068...10,210,918
JBrowse link
G Atp6v0a1 ATPase H+ transporting V0 subunit a1 involved_in IEA
ISO
GO_REF:0000107
(PMID:28793259)
Ensembl
RGD
PMID:28793259 GO_REF:0000107 NCBI chr10:86,436,089...86,490,185
Ensembl chr10:85,935,854...85,989,895
JBrowse link
G Atp6v0a4 ATPase H+ transporting V0 subunit a4 involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr 4:66,760,163...66,842,126
Ensembl chr 4:66,760,159...66,842,110
JBrowse link
G Atp6v0c ATPase H+ transporting V0 subunit C involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr10:13,700,764...13,707,147
Ensembl chr10:13,196,204...13,201,500
JBrowse link
G Atp6v0d1 ATPase H+ transporting V0 subunit D1 involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr19:50,313,268...50,357,248
Ensembl chr19:33,403,355...33,447,450
JBrowse link
G Atp6v0e2 ATPase, H+ transporting V0 subunit e2 involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr 4:78,815,771...78,818,919
Ensembl chr 4:77,482,226...77,488,777
JBrowse link
G Atp6v1a ATPase H+ transporting V1 subunit A involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr11:56,561,444...56,614,694
Ensembl chr11:56,560,974...56,614,694
JBrowse link
G Atp6v1b1 ATPase H+ transporting V1 subunit B1 involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr 4:116,223,799...116,242,475
Ensembl chr 4:116,223,799...116,242,475
JBrowse link
G Atp6v1b2 ATPase H+ transporting V1 subunit B2 involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr16:25,384,254...25,408,388
Ensembl chr16:20,617,518...20,641,745
JBrowse link
G Atp6v1c1 ATPase H+ transporting V1 subunit C1 involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr 7:71,719,326...71,757,191
Ensembl chr 7:69,834,463...69,872,278
JBrowse link
G Atp6v1d ATPase H+ transporting V1 subunit D involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr 6:103,389,778...103,405,346
Ensembl chr 6:97,656,576...97,672,303
JBrowse link
G Atp6v1e1 ATPase H+ transporting V1 subunit E1 involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr 4:154,022,358...154,044,486
Ensembl chr 4:154,022,358...154,044,584
JBrowse link
G Atp6v1f ATPase H+ transporting V1 subunit F involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr 4:59,033,020...59,035,980 JBrowse link
G Atp6v1g1 ATPase H+ transporting V1 subunit G1 involved_in IBA
ISO
GO_REF:0000033
(PMID:28793259)
GO_Central
RGD
PMID:28793259 GO_REF:0000033 NCBI chr 5:76,961,462...76,967,642
Ensembl chr 5:76,961,499...76,969,463
JBrowse link
G Atp6v1g1l1 ATPase H+ transporting V1 subunit G1 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:28,663,974...28,664,273
Ensembl chr10:28,663,974...28,664,273
JBrowse link
G Atp6v1g2 ATPase H+ transporting V1 subunit G2 involved_in ISO
IBA
(PMID:28793259)
GO_REF:0000033
RGD
GO_Central
PMID:28793259 GO_REF:0000033 NCBI chr20:3,592,374...3,595,986
Ensembl chr20:3,587,686...3,590,481
JBrowse link
G Atp6v1g3 ATPase H+ transporting V1 subunit G3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:49,800,256...49,825,247
Ensembl chr13:49,794,222...49,825,247
JBrowse link
G Atp6v1h ATPase H+ transporting V1 subunit H involved_in ISO (PMID:28793259) RGD PMID:28793259 NCBI chr 5:14,379,029...14,484,703
Ensembl chr 5:14,378,257...14,537,962
JBrowse link
G Clcn3 chloride voltage-gated channel 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:11182090)
MGI:2447864 (PMID:21378974)
Ensembl
RGD
PMID:11182090 PMID:21378974 GO_REF:0000107 NCBI chr16:34,138,004...34,210,984
Ensembl chr16:29,127,419...29,200,119
JBrowse link
G Slc17a7 solute carrier family 17 member 7 acts_upstream_of_or_within ISO MGI:3051945 (PMID:19169251) RGD PMID:19169251 NCBI chr 1:104,786,172...104,798,049
Ensembl chr 1:95,649,745...95,661,588
JBrowse link
synaptic vesicle maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlg4 discs large MAGUK scaffold protein 4 involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
GO_REF:0000024
MGI:1915336 (PMID:15603741)
GO_REF:0000107
BHF-UCL
RGD
Ensembl
PMID:15603741 GO_REF:0000024 GO_REF:0000107 NCBI chr10:55,239,397...55,267,780
Ensembl chr10:54,739,470...54,767,153
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein involved_in ISO
ISS
IEA
(PMID:22851330)
GO_REF:0000024
GO_REF:0000107
RGD
Alzheimers_University_of_Toronto
Ensembl
PMID:22851330 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:144,056,415...144,138,045
Ensembl chr 1:144,056,721...144,137,557
JBrowse link
G Rab3a RAB3A, member RAS oncogene family involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3762127 (PMID:11359932)
Ensembl
RGD
PMID:11359932 GO_REF:0000107 NCBI chr16:18,684,185...18,688,297
Ensembl chr16:18,684,188...18,688,336
JBrowse link
G Snapin SNAP-associated protein acts_upstream_of_or_within ISO MGI:3608768 (PMID:19217378) RGD PMID:19217378 NCBI chr 2:175,971,575...175,974,164
Ensembl chr 2:175,971,257...175,974,231
JBrowse link
G Stxbp1 syntaxin binding protein 1 acts_upstream_of_or_within ISO MGI:2183278 (PMID:15145078) RGD PMID:15145078 NCBI chr 3:36,474,428...36,536,120
Ensembl chr 3:16,076,391...16,138,369
JBrowse link
G Unc13a unc-13 homolog A acts_upstream_of_or_within ISO MGI:2449468 (PMID:10440375) RGD PMID:10440375 NCBI chr16:18,367,891...18,415,808
Ensembl chr16:18,336,229...18,381,872
JBrowse link
G Zdhhc15 zinc finger DHHC-type palmitoyltransferase 15 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1277959 (PMID:15603741)
GO_Central
RGD
PMID:15603741 GO_REF:0000033 NCBI chr  X:69,568,086...69,701,756
Ensembl chr  X:69,574,124...69,701,756
JBrowse link
G Zdhhc2 zinc finger DHHC-type palmitoyltransferase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:58,511,931...58,581,530
Ensembl chr16:51,808,468...51,878,060
JBrowse link
G Zdhhc20 zinc finger DHHC-type palmitoyltransferase 20 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:31,980,057...32,039,006
Ensembl chr15:31,983,155...32,038,989
JBrowse link
synaptic vesicle to endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stx12 syntaxin 12 involved_in IDA
IMP
PMID:17004320 SynGO PMID:17004320 PMID:17004320 RGD:12050136, RGD:12050136 NCBI chr 5:150,347,554...150,376,426
Ensembl chr 5:145,063,587...145,092,377
JBrowse link
G Stx6 syntaxin 6 involved_in IDA
IMP
PMID:17004320 SynGO PMID:17004320 PMID:17004320 RGD:12050136, RGD:12050136 NCBI chr13:69,882,647...69,928,895
Ensembl chr13:67,332,314...67,378,576
JBrowse link
G Stx7 syntaxin 7 involved_in ISO (PMID:34408265) RGD PMID:34408265 NCBI chr 1:23,016,330...23,056,579
Ensembl chr 1:21,197,075...21,237,279
JBrowse link
G Vamp4 vesicle-associated membrane protein 4 involved_in IDA
IEP
IMP
PMID:17004320
PMID:26607000
SynGO PMID:17004320 PMID:26607000 PMID:17004320 PMID:26607000 PMID:26607000 RGD:12050136, RGD:11058152, RGD:12050136, RGD:11058152, RGD:11058152 NCBI chr13:77,453,135...77,475,909
Ensembl chr13:74,919,880...74,933,686
JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A involved_in IDA
IMP
PMID:17004320 SynGO PMID:17004320 PMID:17004320 RGD:12050136, RGD:12050136 NCBI chr 1:264,361,538...264,667,171
Ensembl chr 1:254,356,429...254,661,852
JBrowse link
T cell secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srgn serglycin involved_in ISS
ISO
GO_REF:0000024
(PMID:16046402)
UniProt
RGD
PMID:16046402 GO_REF:0000024 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406
JBrowse link
vesicle budding from membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 involved_in ISO (PMID:23861394) RGD PMID:23861394 NCBI chr 8:78,986,252...79,022,638
Ensembl chr 8:70,105,253...70,141,658
JBrowse link
G Ap2m1 adaptor related protein complex 2 subunit mu 1 involved_in ISO (PMID:25898166) RGD PMID:25898166 NCBI chr11:93,859,690...93,868,600
Ensembl chr11:80,328,041...80,364,140
JBrowse link
G Chmp4bl1 chromatin modifying protein 4B-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:68,049,742...68,050,791
Ensembl chr 4:68,049,705...68,050,676
JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:93,299,152...93,336,075
Ensembl chr 2:91,388,530...91,428,668
JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:60,877,369...60,894,512
Ensembl chr 5:56,081,343...56,098,529
JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:105,690,400...105,696,070
Ensembl chr10:105,191,950...105,197,640
JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:51,200,759...51,215,992
Ensembl chr15:44,790,996...44,806,216
JBrowse link
G Fnbp1l formin binding protein 1-like involved_in ISO (PMID:20730103) RGD PMID:20730103 NCBI chr 2:213,331,871...213,432,821
Ensembl chr 2:210,647,246...210,738,455
JBrowse link
G Fsip1 fibrous sheath interacting protein 1 acts_upstream_of_or_within ISO (PMID:33901807) RGD PMID:33901807 NCBI chr 3:105,074,584...105,217,180
Ensembl chr 3:105,068,543...105,217,167
JBrowse link
G Hint1-ps1 histidine triad nucleotide binding protein 1, pseudogene 1 TAS RGD PMID:12871960 RGD:724652 NCBI chr 4:92,100,994...92,101,568 JBrowse link
G Mob4 MOB family member 4, phocein involved_in TAS PMID:11872741 UniProt PMID:11872741 RGD:727348 NCBI chr 9:64,111,170...64,135,740
Ensembl chr 9:56,617,368...56,641,329
JBrowse link
G P2rx7 purinergic receptor P2X 7 acts_upstream_of_or_within ISO (PMID:15905573) RGD PMID:15905573 NCBI chr12:39,550,531...39,594,984
Ensembl chr12:33,879,745...33,934,619
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein involved_in IEA
IBA
ISO
GO_REF:0000107
GO_REF:0000033
(PMID:25898166)
Ensembl
GO_Central
RGD
PMID:25898166 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:144,056,415...144,138,045
Ensembl chr 1:144,056,721...144,137,557
JBrowse link
G S100a10 S100 calcium binding protein A10 involved_in IEA
ISO
GO_REF:0000107
(PMID:23861394)
Ensembl
RGD
PMID:23861394 GO_REF:0000107 NCBI chr 2:181,904,454...181,913,101
Ensembl chr 2:179,220,887...179,229,661
JBrowse link
G Snap91 synaptosome associated protein 91 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:87,738,056...87,852,690
Ensembl chr 8:87,738,824...87,852,367
JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in IEA
ISO
GO_REF:0000107
(PMID:15075231)
Ensembl
RGD
PMID:15075231 GO_REF:0000107 NCBI chr19:51,838,411...51,858,639
Ensembl chr19:34,934,961...34,948,887
JBrowse link
G Wasl WASP like actin nucleation promoting factor involved_in IDA PMID:20730103 BHF-UCL PMID:20730103 RGD:8554834 NCBI chr 4:54,049,081...54,097,653
Ensembl chr 4:53,083,536...53,132,022
JBrowse link
vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C2cd5 C2 calcium-dependent domain containing 5 acts_upstream_of_or_within ISO (PMID:21907143) RGD PMID:21907143 NCBI chr 4:177,700,515...177,790,576
Ensembl chr 4:175,969,545...176,055,558
JBrowse link
G Cav2 caveolin 2 involved_in ISS
ISO
IEA
PMID:12743374
(PMID:12743374)
GO_REF:0000107
RGD
Ensembl
PMID:12743374 PMID:12743374 GO_REF:0000107, RGD:8554755 NCBI chr 4:46,582,681...46,590,058
Ensembl chr 4:45,616,712...45,624,244
JBrowse link
G Chp1 calcineurin-like EF-hand protein 1 IDA RGD PMID:8626580 RGD:724726 NCBI chr 3:126,989,800...127,025,071
Ensembl chr 3:106,536,004...106,571,251
JBrowse link
G Coro1a coronin 1A acts_upstream_of ISO MGI:3778894 (PMID:24270184) RGD PMID:24270184 NCBI chr 1:190,726,129...190,731,133
Ensembl chr 1:181,295,562...181,300,534
JBrowse link
G Dysf dysferlin involved_in ISO (PMID:12736685) RGD PMID:12736685 NCBI chr 4:118,048,460...118,248,273
Ensembl chr 4:116,490,616...116,690,709
JBrowse link
G Eea1 early endosome antigen 1 involved_in ISO (PMID:9697774) RGD PMID:9697774 NCBI chr 7:32,441,281...32,608,808
Ensembl chr 7:30,554,552...30,718,487
JBrowse link
G Gnai3 G protein subunit alpha i3 IDA RGD PMID:12038977 RGD:728690 NCBI chr 2:198,430,920...198,468,874
Ensembl chr 2:195,742,642...195,780,742
JBrowse link
G Gosr1 golgi SNAP receptor complex member 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:61,570,499...61,607,287
Ensembl chr10:61,450,494...61,607,177
Ensembl chr10:61,450,494...61,607,177
JBrowse link
G Gosr2 golgi SNAP receptor complex member 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:89,085,323...89,105,665
Ensembl chr10:88,586,299...88,605,625
JBrowse link
G LOC103690878 syntaxin-3-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:73,695,215...73,696,108
Ensembl chr  X:73,695,215...73,696,108
JBrowse link
G Stx12 syntaxin 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:150,347,554...150,376,426
Ensembl chr 5:145,063,587...145,092,377
JBrowse link
G Stx16 syntaxin 16 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:183,271,417...183,300,746
Ensembl chr 3:162,853,782...162,882,489
JBrowse link
G Stx17 syntaxin 17 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:67,241,673...67,302,228
Ensembl chr 5:62,446,187...62,504,451
JBrowse link
G Stx1a syntaxin 1A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:27,278,517...27,306,547
Ensembl chr12:21,641,969...21,669,930
JBrowse link
G Stx2 syntaxin 2 TAS RGD PMID:8938452 PMID:10564647 RGD:728629, RGD:1298910 NCBI chr12:33,315,447...33,350,788
Ensembl chr12:27,689,819...27,714,751
JBrowse link
G Stx3 syntaxin 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:217,940,697...218,114,865
Ensembl chr 1:208,639,115...208,685,805
JBrowse link
G Stx4 syntaxin 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:191,880,549...191,890,333
Ensembl chr 1:182,451,117...182,459,979
JBrowse link
G Stx5 syntaxin 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:215,066,532...215,082,685
Ensembl chr 1:205,637,413...205,653,563
JBrowse link
G Stx6 syntaxin 6 involved_in ISO
IBA
UniProtKB:Q15075 (PMID:10506127)
GO_REF:0000033
RGD
GO_Central
PMID:10506127 GO_REF:0000033 NCBI chr13:69,882,647...69,928,895
Ensembl chr13:67,332,314...67,378,576
JBrowse link
G Stx7 syntaxin 7 involved_in IDA
IBA
GO_REF:0000033 GO_Central
RGD
PMID:15133481 GO_REF:0000033, RGD:4892614 NCBI chr 1:23,016,330...23,056,579
Ensembl chr 1:21,197,075...21,237,279
JBrowse link
G Stx8 syntaxin 8 involved_in IDA
IBA
GO_REF:0000033 GO_Central
RGD
PMID:15133481 GO_REF:0000033, RGD:4892614 NCBI chr10:53,154,572...53,393,912
Ensembl chr10:52,654,990...52,894,993
JBrowse link
G Syt1 synaptotagmin 1 involved_in IMP
IDA
PMID:24001110 DisProt PMID:24001110 PMID:24001110 RGD:407429997, RGD:407429997 NCBI chr 7:45,699,649...46,244,460
Ensembl chr 7:43,815,785...44,357,803
JBrowse link
G Syt11 synaptotagmin 11 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:176,503,845...176,530,354
Ensembl chr 2:174,206,191...174,231,964
JBrowse link
G Syt4 synaptotagmin 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:23,036,973...23,046,380
Ensembl chr18:23,038,378...23,046,332
JBrowse link
G Syt7 synaptotagmin 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:216,456,148...216,518,718
Ensembl chr 1:207,031,592...207,089,026
JBrowse link
G Vamp1 vesicle-associated membrane protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:159,698,894...159,705,582
Ensembl chr 4:158,012,663...158,019,349
JBrowse link
G Vamp2 vesicle-associated membrane protein 2 involved_in IEA
IBA
ISO
ISS
GO_REF:0000107
GO_REF:0000033
(PMID:30929742)
GO_REF:0000024
Ensembl
GO_Central
RGD
UniProt
PMID:30929742 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:54,292,423...54,296,657
Ensembl chr10:53,793,923...53,797,809
JBrowse link
G Vamp3 vesicle-associated membrane protein 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:166,780,927...166,791,522
Ensembl chr 5:161,498,109...161,508,751
JBrowse link
G Vamp7 vesicle-associated membrane protein 7 involved_in IDA
IBA
ISO
GO_REF:0000033
(PMID:10888671)
PMID:15133481
GO_Central
RGD
PMID:10888671 PMID:15133481 PMID:15133481 GO_REF:0000033, RGD:4892614, RGD:4892614 NCBI chr12:21,842,206...21,958,556
Ensembl chr12:16,728,524...16,764,097
JBrowse link
G Vamp8 vesicle-associated membrane protein 8 acts_upstream_of_or_within
involved_in
IDA
ISO
IBA
MGI:3056083 (PMID:18535671)
GO_REF:0000033
RGD
GO_Central
PMID:18535671 PMID:15133481 GO_REF:0000033, RGD:4892614 NCBI chr 4:106,000,570...106,011,081
Ensembl chr 4:104,442,393...104,452,897
JBrowse link
G Vamp9 vesicle-associated membrane protein 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:9,644,109...9,681,254
Ensembl chr14:9,644,582...9,681,205
JBrowse link
G Vav3 vav guanine nucleotide exchange factor 3 acts_upstream_of_or_within ISO MGI:98923 (PMID:15249579) RGD PMID:15249579 NCBI chr 2:199,699,861...200,042,344
Ensembl chr 2:197,011,831...197,354,321
JBrowse link
vesicle fusion to plasma membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trarg1 trafficking regulator of GLUT4 (SLC2A4) 1 acts_upstream_of_or_within ISO (PMID:26629404) RGD PMID:26629404 NCBI chr10:61,521,107...61,541,494
Ensembl chr10:61,521,107...61,541,494
JBrowse link
vesicle fusion with Golgi apparatus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bet1 Bet1 golgi vesicular membrane trafficking protein involved_in IDA
IBA
GO_REF:0000033 GO_Central
RGD
PMID:16735505 GO_REF:0000033, RGD:4892613 NCBI chr 4:33,070,892...33,081,162
Ensembl chr 4:32,116,235...32,126,617
JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:188,188,783...188,209,565
Ensembl chr 2:185,500,004...185,522,026
JBrowse link
G Stx5 syntaxin 5 IDA RGD PMID:16735505 RGD:4892613 NCBI chr 1:215,066,532...215,082,685
Ensembl chr 1:205,637,413...205,653,563
JBrowse link
G Uso1 USO1 vesicle transport factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:16,150,921...16,216,389
Ensembl chr14:15,866,638...15,932,171
JBrowse link
G Vamp7 vesicle-associated membrane protein 7 IDA RGD PMID:16735505 RGD:4892613 NCBI chr12:21,842,206...21,958,556
Ensembl chr12:16,728,524...16,764,097
JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A involved_in IDA
IBA
GO_REF:0000033 GO_Central
RGD
PMID:16735505 GO_REF:0000033, RGD:4892613 NCBI chr 1:264,361,538...264,667,171
Ensembl chr 1:254,356,429...254,661,852
JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:97,957,700...97,976,491
Ensembl chr 6:97,961,346...97,976,465
JBrowse link
G Yipf4 Yip1 domain family, member 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:26,702,647...26,714,066
Ensembl chr 6:20,950,501...20,962,229
JBrowse link
G Yipf5 Yip1 domain family, member 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:32,374,913...32,388,046
Ensembl chr18:32,123,842...32,157,642
JBrowse link
G Yipf7 Yip1 domain family, member 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:38,571,045...38,599,070
Ensembl chr14:38,571,066...38,599,055
JBrowse link
vesicle fusion with vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Syt4 synaptotagmin 4 involved_in IMP PMID:16618809 ParkinsonsUK-UCL PMID:16618809 RGD:11535113 NCBI chr18:23,036,973...23,046,380
Ensembl chr18:23,038,378...23,046,332
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      cellular component organization or biogenesis 7188
        cellular component organization 6904
          organelle organization 3691
            vesicle organization 366
              Cvt vesicle assembly 0
              ciliary vesicle assembly 0
              contractile vacuole organization 0
              endosome organization + 63
              extracellular exosome assembly + 7
              gut granule assembly + 0
              phagolysosome assembly + 17
              pigment granule organization + 22
              secretory granule organization + 67
              synaptic vesicle maturation + 31
              vesicle budding from membrane + 70
              vesicle coating + 15
              vesicle fusion + 125
paths to the root