Synj1 (synaptojanin 1) - Rat Genome Database

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Gene: Synj1 (synaptojanin 1) Rattus norvegicus
Analyze
Symbol: Synj1
Name: synaptojanin 1
RGD ID: 69434
Description: Enables phosphatase activity and protein domain specific binding activity. Involved in several processes, including positive regulation of gliogenesis; positive regulation of receptor-mediated endocytosis; and response to retinoic acid. Located in microtubule and synaptic membrane. Part of clathrin coat of coated pit. Is active in parallel fiber to Purkinje cell synapse and presynapse. Human ortholog(s) of this gene implicated in Parkinson's disease; Parkinson's disease 20; and developmental and epileptic encephalopathy 53. Orthologous to human SYNJ1 (synaptojanin 1); PARTICIPATES IN altered clathrin-dependent synaptic vesicle endocytosis; clathrin-dependent synaptic vesicle endocytosis; ephrin - ephrin receptor bidirectional signaling axis; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; synaptic inositol-1,4,5-trisphosphate 5-phosphatase 1; synaptojanin-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81143,678,709 - 43,755,526 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1143,678,709 - 43,755,526 (-)EnsemblGRCr8
mRatBN7.21130,192,629 - 30,269,447 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1130,192,629 - 30,269,220 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1138,879,383 - 38,956,048 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01131,550,808 - 31,627,473 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01130,725,282 - 30,801,896 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01131,105,784 - 31,181,573 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1131,104,787 - 31,180,642 (-)Ensemblrn6Rnor6.0
Rnor_5.01134,717,258 - 34,792,366 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41130,921,834 - 30,998,609 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1129,860,879 - 29,935,097 (-)NCBICelera
RGSC_v3.11130,921,975 - 30,966,053 (-)NCBI
Cytogenetic Map11q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. MNB/DYRK1A phosphorylation regulates the interactions of synaptojanin 1 with endocytic accessory proteins. Adayev T, etal., Biochem Biophys Res Commun. 2006 Dec 29;351(4):1060-5. doi: 10.1016/j.bbrc.2006.10.169. Epub 2006 Nov 7.
2. The Abl/Arg substrate ArgBP2/nArgBP2 coordinates the function of multiple regulatory mechanisms converging on the actin cytoskeleton. Cestra G, etal., Proc Natl Acad Sci U S A. 2005 Feb 1;102(5):1731-6. Epub 2005 Jan 19.
3. Identification of the major synaptojanin-binding proteins in brain. de Heuvel E, etal., J Biol Chem. 1997 Mar 28;272(13):8710-6.
4. Synaptojanin 1 mutation in Parkinson's disease brings further insight into the neuropathological mechanisms. Drouet V and Lesage S, Biomed Res Int. 2014;2014:289728. doi: 10.1155/2014/289728. Epub 2014 Sep 16.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. Synaptojanin 1: localization on coated endocytic intermediates in nerve terminals and interaction of its 170 kDa isoform with Eps15. Haffner C, etal., FEBS Lett. 1997 Dec 15;419(2-3):175-80.
8. Synaptojanin-1 plays a key role in astrogliogenesis: possible relevance for Down's syndrome. Herrera F, etal., Cell Death Differ. 2009 Jun;16(6):910-20. Epub 2009 Mar 13.
9. Impaired intracellular trafficking defines early Parkinson's disease. Hunn BH, etal., Trends Neurosci. 2015 Mar;38(3):178-88. doi: 10.1016/j.tins.2014.12.009. Epub 2015 Jan 29.
10. EphrinB-EphB signalling regulates clathrin-mediated endocytosis through tyrosine phosphorylation of synaptojanin 1. Irie F, etal., Nat Cell Biol. 2005 May;7(5):501-9. Epub 2005 Apr 10.
11. Myosin 1E interacts with synaptojanin-1 and dynamin and is involved in endocytosis. Krendel M, etal., FEBS Lett. 2007 Feb 20;581(4):644-50. Epub 2007 Jan 18.
12. Localization of mRNAs for synaptojanin isoforms in the brain of developing and mature rats. Kudo M, etal., Brain Res Mol Brain Res. 1999 Feb 5;64(2):179-85.
13. Regulation of synaptojanin 1 by cyclin-dependent kinase 5 at synapses. Lee SY, etal., Proc Natl Acad Sci U S A. 2004 Jan 13;101(2):546-51. Epub 2004 Jan 2.
14. p145, a major Grb2-binding protein in brain, is co-localized with dynamin in nerve terminals where it undergoes activity-dependent dephosphorylation. McPherson PS, etal., J Biol Chem. 1994 Dec 2;269(48):30132-9.
15. A presynaptic inositol-5-phosphatase. McPherson PS, etal., Nature 1996 Jan 25;379(6563):353-7.
16. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
17. Synaptojanin forms two separate complexes in the nerve terminal. Interactions with endophilin and amphiphysin. Micheva KD, etal., J Biol Chem. 1997 Oct 24;272(43):27239-45. doi: 10.1074/jbc.272.43.27239.
18. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
19. Identification and characterization of a synaptojanin 2 splice isoform predominantly expressed in nerve terminals. Nemoto Y, etal., J Biol Chem 2001 Nov 2;276(44):41133-42.
20. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
21. SNX18 shares a redundant role with SNX9 and modulates endocytic trafficking at the plasma membrane. Park J, etal., J Cell Sci. 2010 May 15;123(Pt 10):1742-50. doi: 10.1242/jcs.064170. Epub 2010 Apr 27.
22. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
23. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
24. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
25. Syndapin I, a synaptic dynamin-binding protein that associates with the neural Wiskott-Aldrich syndrome protein. Qualmann B, etal., Mol Biol Cell 1999 Feb;10(2):501-13.
26. Tissue-specific alternative splicing generates two synaptojanin isoforms with differential membrane binding properties. Ramjaun AR and McPherson PS, J Biol Chem. 1996 Oct 4;271(40):24856-61. doi: 10.1074/jbc.271.40.24856.
27. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
28. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
29. Differential expression of endophilin 1 and 2 dimers at central nervous system synapses. Ringstad N, etal., J Biol Chem. 2001 Nov 2;276(44):40424-30. doi: 10.1074/jbc.M106338200. Epub 2001 Aug 22.
30. The SH3p4/Sh3p8/SH3p13 protein family: binding partners for synaptojanin and dynamin via a Grb2-like Src homology 3 domain. Ringstad N, etal., Proc Natl Acad Sci U S A 1997 Aug 5;94(16):8569-74.
31. Synaptic vesicle endocytosis. Saheki Y and De Camilli P, Cold Spring Harb Perspect Biol. 2012 Sep 1;4(9):a005645. doi: 10.1101/cshperspect.a005645.
32. The interaction between EEN and Abi-1, two MLL fusion partners, and synaptojanin and dynamin: implications for leukaemogenesis. So CW, etal., Leukemia. 2000 Apr;14(4):594-601.
33. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
34. Characterization and purification of phosphatidylinositol trisphosphate 5-phosphatase from rat brain tissues. Woscholski R Methods Enzymol 2002;345:335-45.
35. Identification and characterisation of a novel splice variant of synaptojanin1. Woscholski R, etal., FEBS Lett 1998 Jul 31;432(1-2):5-8.
Additional References at PubMed
PMID:9195986   PMID:9694653   PMID:9813051   PMID:10535736   PMID:11879655   PMID:12481038   PMID:12606338   PMID:17762867   PMID:18093523   PMID:18591654   PMID:18987319   PMID:20448150  
PMID:22099461   PMID:22511594   PMID:22871113   PMID:28131823   PMID:29476059   PMID:30053369   PMID:32357304  


Genomics

Comparative Map Data
Synj1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81143,678,709 - 43,755,526 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1143,678,709 - 43,755,526 (-)EnsemblGRCr8
mRatBN7.21130,192,629 - 30,269,447 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1130,192,629 - 30,269,220 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1138,879,383 - 38,956,048 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01131,550,808 - 31,627,473 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01130,725,282 - 30,801,896 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01131,105,784 - 31,181,573 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1131,104,787 - 31,180,642 (-)Ensemblrn6Rnor6.0
Rnor_5.01134,717,258 - 34,792,366 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41130,921,834 - 30,998,609 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1129,860,879 - 29,935,097 (-)NCBICelera
RGSC_v3.11130,921,975 - 30,966,053 (-)NCBI
Cytogenetic Map11q11NCBI
SYNJ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382132,628,759 - 32,728,394 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2132,628,759 - 32,728,040 (-)Ensemblhg38GRCh38
GRCh372134,001,073 - 34,100,705 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362132,922,944 - 33,022,148 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342132,922,943 - 33,022,105NCBI
Celera2119,184,699 - 19,284,009 (-)NCBICelera
Cytogenetic Map21q22.11NCBI
HuRef2119,410,440 - 19,509,720 (-)NCBIHuRef
CHM1_12133,562,725 - 33,661,992 (-)NCBICHM1_1
T2T-CHM13v2.02130,994,760 - 31,094,413 (-)NCBIT2T-CHM13v2.0
Synj1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391690,732,980 - 90,810,543 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1690,732,980 - 90,808,196 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381690,936,092 - 91,013,727 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1690,936,092 - 91,011,308 (-)Ensemblmm10GRCm38
MGSCv371690,936,342 - 91,011,553 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361690,824,951 - 90,900,361 (-)NCBIMGSCv36mm8
Celera1692,017,943 - 92,093,156 (-)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1652.18NCBI
Synj1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540732,093,479 - 32,175,795 (-)Ensembl
ChiLan1.0NW_00495540732,094,076 - 32,175,676 (-)NCBIChiLan1.0ChiLan1.0
SYNJ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22228,740,967 - 28,840,743 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12123,600,937 - 23,700,710 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02118,990,526 - 19,088,839 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12132,368,949 - 32,466,994 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2132,368,949 - 32,466,994 (-)EnsemblpanPan2panpan1.1
SYNJ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13127,308,169 - 27,399,226 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3127,308,169 - 27,399,197 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3127,301,124 - 27,392,150 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03127,428,088 - 27,497,209 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3127,428,088 - 27,596,918 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13127,372,989 - 27,463,773 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03127,384,757 - 27,475,496 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03127,892,120 - 27,983,140 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Synj1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497127,901,843 - 27,983,289 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365009,484,586 - 9,566,100 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365009,484,571 - 9,565,980 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYNJ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13196,230,104 - 196,330,384 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113196,230,101 - 196,330,512 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213206,240,582 - 206,342,113 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYNJ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1259,421,561 - 59,523,076 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl259,422,110 - 59,523,176 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660711,959,498 - 2,063,300 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Synj1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474520,881,317 - 20,984,184 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474520,881,312 - 20,984,242 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Synj1
262 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:559
Count of miRNA genes:206
Interacting mature miRNAs:256
Transcripts:ENSRNOT00000002812, ENSRNOT00000052033, ENSRNOT00000065535
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)113330600878306008Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11381815448818154Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113330600878306008Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)111080612555806125Rat
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)113532319955805892Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)112995899657754989Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)113191546976915469Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)112631803155806125Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)113642841681428416Rat
1600394Edcs1Endometrial carcinoma susceptibility QTL12.90.04uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)111282315257823152Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)113461876079618760Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)113674945981749459Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)113674945981749459Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
631510Spl2Serum phospholipid level QTL 24.1blood phospholipid amount (VT:0006084)serum phospholipid level (CMO:0001171)112755668572556685Rat

Markers in Region
D11Rat98  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,223,187 - 30,223,321 (+)MAPPERmRatBN7.2
Rnor_6.01131,135,608 - 31,135,741NCBIRnor6.0
Rnor_5.01134,746,400 - 34,746,533UniSTSRnor5.0
RGSC_v3.41130,952,088 - 30,952,222RGDRGSC3.4
RGSC_v3.41130,952,089 - 30,952,222UniSTSRGSC3.4
Celera1129,890,048 - 29,890,179UniSTS
RGSC_v3.11130,951,995 - 30,952,129RGD
SHRSP x BN Map118.2299RGD
SHRSP x BN Map118.2299UniSTS
Cytogenetic Map11q11UniSTS
RH127638  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,192,908 - 30,193,103 (+)MAPPERmRatBN7.2
Rnor_6.01131,105,092 - 31,105,286NCBIRnor6.0
Rnor_5.01134,716,566 - 34,716,760UniSTSRnor5.0
RGSC_v3.41130,921,142 - 30,921,336UniSTSRGSC3.4
Celera1129,860,187 - 29,860,381UniSTS
RH 3.4 Map11181.4UniSTS
Cytogenetic Map11q11UniSTS
RH143404  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21130,193,171 - 30,193,366 (+)MAPPERmRatBN7.2
Rnor_6.01131,105,355 - 31,105,549NCBIRnor6.0
Rnor_5.01134,716,829 - 34,717,023UniSTSRnor5.0
RGSC_v3.41130,921,405 - 30,921,599UniSTSRGSC3.4
Celera1129,860,450 - 29,860,644UniSTS
RH 3.4 Map11182.7UniSTS
Cytogenetic Map11q11UniSTS
REN82086  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81143,731,545 - 43,731,769 (+)Marker Load Pipeline
mRatBN7.21130,245,465 - 30,245,690 (+)MAPPERmRatBN7.2
Rnor_6.01131,157,885 - 31,158,109NCBIRnor6.0
Rnor_5.01134,768,677 - 34,768,901UniSTSRnor5.0
RGSC_v3.41130,974,366 - 30,974,590UniSTSRGSC3.4
Celera1129,912,321 - 29,912,545UniSTS
Cytogenetic Map11q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001415050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC094784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC120732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ006855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U45479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U91836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000002812   ⟹   ENSRNOP00000002812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1143,686,482 - 43,755,526 (-)Ensembl
mRatBN7.2 Ensembl1130,200,402 - 30,269,206 (-)Ensembl
Rnor_6.0 Ensembl1131,105,799 - 31,180,642 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000052033   ⟹   ENSRNOP00000045019
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1143,678,709 - 43,755,161 (-)Ensembl
mRatBN7.2 Ensembl1130,192,629 - 30,269,206 (-)Ensembl
Rnor_6.0 Ensembl1131,104,787 - 31,180,636 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000065535   ⟹   ENSRNOP00000060346
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1130,194,610 - 30,269,220 (-)Ensembl
Rnor_6.0 Ensembl1131,106,934 - 31,180,616 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096546   ⟹   ENSRNOP00000092411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1143,679,827 - 43,755,526 (-)Ensembl
mRatBN7.2 Ensembl1130,194,610 - 30,269,206 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110151   ⟹   ENSRNOP00000087611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1143,679,827 - 43,755,526 (-)Ensembl
mRatBN7.2 Ensembl1130,194,610 - 30,269,206 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113478   ⟹   ENSRNOP00000092530
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1143,679,827 - 43,755,526 (-)Ensembl
mRatBN7.2 Ensembl1130,194,610 - 30,269,206 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114591   ⟹   ENSRNOP00000086242
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1143,679,827 - 43,755,526 (-)Ensembl
mRatBN7.2 Ensembl1130,194,610 - 30,269,206 (-)Ensembl
RefSeq Acc Id: NM_001415050   ⟹   NP_001401979
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,161 (-)NCBI
mRatBN7.21130,192,629 - 30,269,082 (-)NCBI
RefSeq Acc Id: NM_053476   ⟹   NP_445928
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,526 (-)NCBI
mRatBN7.21130,192,629 - 30,269,447 (-)NCBI
Rnor_6.01131,105,784 - 31,181,573 (-)NCBI
Rnor_5.01134,717,258 - 34,792,366 (-)NCBI
RGSC_v3.41130,921,834 - 30,998,609 (-)RGD
Celera1129,860,879 - 29,935,097 (-)RGD
Sequence:
RefSeq Acc Id: XM_039088690   ⟹   XP_038944618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,359 (-)NCBI
mRatBN7.21130,192,629 - 30,269,277 (-)NCBI
RefSeq Acc Id: XM_039088691   ⟹   XP_038944619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,359 (-)NCBI
mRatBN7.21130,192,629 - 30,269,277 (-)NCBI
RefSeq Acc Id: XM_039088692   ⟹   XP_038944620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,359 (-)NCBI
mRatBN7.21130,192,629 - 30,269,277 (-)NCBI
RefSeq Acc Id: XM_039088693   ⟹   XP_038944621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,359 (-)NCBI
mRatBN7.21130,192,629 - 30,269,277 (-)NCBI
RefSeq Acc Id: XM_039088694   ⟹   XP_038944622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,359 (-)NCBI
mRatBN7.21130,192,629 - 30,269,277 (-)NCBI
RefSeq Acc Id: XM_039088695   ⟹   XP_038944623
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,359 (-)NCBI
mRatBN7.21130,192,629 - 30,269,277 (-)NCBI
RefSeq Acc Id: XM_039088696   ⟹   XP_038944624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,359 (-)NCBI
mRatBN7.21130,192,629 - 30,269,276 (-)NCBI
RefSeq Acc Id: XM_039088697   ⟹   XP_038944625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,359 (-)NCBI
mRatBN7.21130,192,629 - 30,269,276 (-)NCBI
RefSeq Acc Id: XM_039088699   ⟹   XP_038944627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,681,485 - 43,755,359 (-)NCBI
mRatBN7.21130,195,405 - 30,269,277 (-)NCBI
RefSeq Acc Id: XM_039088700   ⟹   XP_038944628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,682,229 - 43,755,359 (-)NCBI
mRatBN7.21130,196,149 - 30,269,277 (-)NCBI
RefSeq Acc Id: XM_039088702   ⟹   XP_038944630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,683,058 - 43,755,359 (-)NCBI
mRatBN7.21130,196,978 - 30,269,277 (-)NCBI
RefSeq Acc Id: XM_039088706   ⟹   XP_038944634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,720,852 (-)NCBI
mRatBN7.21130,192,629 - 30,234,785 (-)NCBI
RefSeq Acc Id: XM_063270805   ⟹   XP_063126875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,359 (-)NCBI
RefSeq Acc Id: XM_063270806   ⟹   XP_063126876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,359 (-)NCBI
RefSeq Acc Id: XM_063270807   ⟹   XP_063126877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,359 (-)NCBI
RefSeq Acc Id: XM_063270809   ⟹   XP_063126879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,359 (-)NCBI
RefSeq Acc Id: XM_063270810   ⟹   XP_063126880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,187 (-)NCBI
RefSeq Acc Id: XM_063270811   ⟹   XP_063126881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,359 (-)NCBI
RefSeq Acc Id: XM_063270812   ⟹   XP_063126882
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,187 (-)NCBI
RefSeq Acc Id: XM_063270813   ⟹   XP_063126883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,359 (-)NCBI
RefSeq Acc Id: XM_063270814   ⟹   XP_063126884
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,187 (-)NCBI
RefSeq Acc Id: XM_063270815   ⟹   XP_063126885
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,187 (-)NCBI
RefSeq Acc Id: XM_063270816   ⟹   XP_063126886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,204 (-)NCBI
RefSeq Acc Id: XM_063270817   ⟹   XP_063126887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,678,709 - 43,755,187 (-)NCBI
RefSeq Acc Id: XM_063270818   ⟹   XP_063126888
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,683,058 - 43,755,359 (-)NCBI
RefSeq Acc Id: XM_063270819   ⟹   XP_063126889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,681,485 - 43,755,359 (-)NCBI
RefSeq Acc Id: XM_063270820   ⟹   XP_063126890
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,683,061 - 43,755,359 (-)NCBI
RefSeq Acc Id: XM_063270821   ⟹   XP_063126891
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,681,485 - 43,755,359 (-)NCBI
RefSeq Acc Id: XM_063270822   ⟹   XP_063126892
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,681,485 - 43,755,359 (-)NCBI
RefSeq Acc Id: XM_063270823   ⟹   XP_063126893
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,681,485 - 43,755,359 (-)NCBI
RefSeq Acc Id: XM_063270824   ⟹   XP_063126894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,683,061 - 43,755,359 (-)NCBI
RefSeq Acc Id: XM_063270825   ⟹   XP_063126895
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,681,485 - 43,755,359 (-)NCBI
RefSeq Acc Id: XM_063270826   ⟹   XP_063126896
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,681,485 - 43,755,359 (-)NCBI
RefSeq Acc Id: XM_063270827   ⟹   XP_063126897
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,681,485 - 43,755,359 (-)NCBI
RefSeq Acc Id: XM_063270828   ⟹   XP_063126898
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81143,683,061 - 43,755,359 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001401979 (Get FASTA)   NCBI Sequence Viewer  
  NP_445928 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944618 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944619 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944620 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944621 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944622 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944623 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944624 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944625 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944627 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944628 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944630 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944634 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126875 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126876 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126877 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126879 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126880 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126881 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126882 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126883 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126884 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126885 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126886 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126887 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126888 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126889 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126890 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126891 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126892 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126893 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126894 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126895 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126896 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126897 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126898 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB60525 (Get FASTA)   NCBI Sequence Viewer  
  AAO24807 (Get FASTA)   NCBI Sequence Viewer  
  CAA07267 (Get FASTA)   NCBI Sequence Viewer  
  EDM10700 (Get FASTA)   NCBI Sequence Viewer  
  EDM10701 (Get FASTA)   NCBI Sequence Viewer  
  EDM10702 (Get FASTA)   NCBI Sequence Viewer  
  EDM10703 (Get FASTA)   NCBI Sequence Viewer  
  EDM10704 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000002812
  ENSRNOP00000045019
  ENSRNOP00000045019.6
  ENSRNOP00000086242
  ENSRNOP00000092411
  ENSRNOP00000092530
GenBank Protein Q62910 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_445928   ⟸   NM_053476
- Peptide Label: isoform 1
- UniProtKB: A6JLD7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002812   ⟸   ENSRNOT00000002812
Ensembl Acc Id: ENSRNOP00000060346   ⟸   ENSRNOT00000065535
Ensembl Acc Id: ENSRNOP00000045019   ⟸   ENSRNOT00000052033
RefSeq Acc Id: XP_038944619   ⟸   XM_039088691
- Peptide Label: isoform X2
- UniProtKB: Q810Z8 (UniProtKB/Swiss-Prot),   Q62911 (UniProtKB/Swiss-Prot),   Q62910 (UniProtKB/Swiss-Prot),   O89092 (UniProtKB/Swiss-Prot),   A0A8L2QTB1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944620   ⟸   XM_039088692
- Peptide Label: isoform X3
- UniProtKB: Q810Z8 (UniProtKB/Swiss-Prot),   Q62911 (UniProtKB/Swiss-Prot),   Q62910 (UniProtKB/Swiss-Prot),   O89092 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038944623   ⟸   XM_039088695
- Peptide Label: isoform X9
- UniProtKB: A0A8I6AFG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944621   ⟸   XM_039088693
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AFG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944622   ⟸   XM_039088694
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AFG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944618   ⟸   XM_039088690
- Peptide Label: isoform X1
- UniProtKB: Q810Z8 (UniProtKB/Swiss-Prot),   Q62911 (UniProtKB/Swiss-Prot),   Q62910 (UniProtKB/Swiss-Prot),   O89092 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038944625   ⟸   XM_039088697
- Peptide Label: isoform X15
- UniProtKB: A0A8I6AHP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944624   ⟸   XM_039088696
- Peptide Label: isoform X12
- UniProtKB: A0A8I6AHP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944634   ⟸   XM_039088706
- Peptide Label: isoform X33
- UniProtKB: A6JLD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944627   ⟸   XM_039088699
- Peptide Label: isoform X21
- UniProtKB: D4ABN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944628   ⟸   XM_039088700
- Peptide Label: isoform X21
- UniProtKB: D4ABN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944630   ⟸   XM_039088702
- Peptide Label: isoform X22
- UniProtKB: D4ABN3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000092530   ⟸   ENSRNOT00000113478
Ensembl Acc Id: ENSRNOP00000087611   ⟸   ENSRNOT00000110151
Ensembl Acc Id: ENSRNOP00000086242   ⟸   ENSRNOT00000114591
Ensembl Acc Id: ENSRNOP00000092411   ⟸   ENSRNOT00000096546
RefSeq Acc Id: NP_001401979   ⟸   NM_001415050
- Peptide Label: isoform 2
- UniProtKB: D4ABN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126883   ⟸   XM_063270813
- Peptide Label: isoform X16
- UniProtKB: A0A8I6AHP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126875   ⟸   XM_063270805
- Peptide Label: isoform X4
- UniProtKB: Q810Z8 (UniProtKB/Swiss-Prot),   Q62911 (UniProtKB/Swiss-Prot),   Q62910 (UniProtKB/Swiss-Prot),   O89092 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063126881   ⟸   XM_063270811
- Peptide Label: isoform X13
- UniProtKB: A0A8I6AHP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126876   ⟸   XM_063270806
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AFG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126877   ⟸   XM_063270807
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AFG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126879   ⟸   XM_063270809
- Peptide Label: isoform X10
- UniProtKB: A6JLD5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126886   ⟸   XM_063270816
- Peptide Label: isoform X19
- UniProtKB: A0A8I6AHP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126887   ⟸   XM_063270817
- Peptide Label: isoform X20
- UniProtKB: A0A8I6AHP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126884   ⟸   XM_063270814
- Peptide Label: isoform X17
- UniProtKB: A0A8I6A4X9 (UniProtKB/TrEMBL),   A6JLD5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126885   ⟸   XM_063270815
- Peptide Label: isoform X18
- UniProtKB: A6JLD5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126882   ⟸   XM_063270812
- Peptide Label: isoform X14
- UniProtKB: Q810Z8 (UniProtKB/Swiss-Prot),   Q62911 (UniProtKB/Swiss-Prot),   Q62910 (UniProtKB/Swiss-Prot),   O89092 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063126880   ⟸   XM_063270810
- Peptide Label: isoform X11
- UniProtKB: Q810Z8 (UniProtKB/Swiss-Prot),   Q62911 (UniProtKB/Swiss-Prot),   Q62910 (UniProtKB/Swiss-Prot),   O89092 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063126897   ⟸   XM_063270827
- Peptide Label: isoform X31
- UniProtKB: A6JLD7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126891   ⟸   XM_063270821
- Peptide Label: isoform X25
- UniProtKB: D4ABN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126895   ⟸   XM_063270825
- Peptide Label: isoform X29
- UniProtKB: A6JLD7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126892   ⟸   XM_063270822
- Peptide Label: isoform X26
- UniProtKB: A6JLD7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126893   ⟸   XM_063270823
- Peptide Label: isoform X27
- UniProtKB: A6JLD7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126889   ⟸   XM_063270819
- Peptide Label: isoform X23
- UniProtKB: D4ABN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126896   ⟸   XM_063270826
- Peptide Label: isoform X30
- UniProtKB: A6JLD7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126888   ⟸   XM_063270818
- Peptide Label: isoform X21
- UniProtKB: D4ABN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126898   ⟸   XM_063270828
- Peptide Label: isoform X32
- UniProtKB: A6JLD7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126894   ⟸   XM_063270824
- Peptide Label: isoform X28
- UniProtKB: A6JLD7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126890   ⟸   XM_063270820
- Peptide Label: isoform X24
- UniProtKB: D4ABN3 (UniProtKB/TrEMBL)
Protein Domains
RRM   SAC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62910-F1-model_v2 AlphaFold Q62910 1-1574 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69434 AgrOrtholog
BIND 129614
  130419
  130567
  130570
  134435
BioCyc Gene G2FUF-21927 BioCyc
Ensembl Genes ENSRNOG00000002051 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000002812 ENTREZGENE
  ENSRNOT00000052033 ENTREZGENE
  ENSRNOT00000052033.7 UniProtKB/Swiss-Prot
  ENSRNOT00000096546 ENTREZGENE
  ENSRNOT00000113478 ENTREZGENE
  ENSRNOT00000114591 ENTREZGENE
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot
  3.60.10.10 UniProtKB/Swiss-Prot
InterPro DUF1866 UniProtKB/Swiss-Prot
  Endo/exonu/phosph_ase_sf UniProtKB/Swiss-Prot
  IP5 UniProtKB/Swiss-Prot
  IPPc UniProtKB/Swiss-Prot
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
  SAC_dom UniProtKB/Swiss-Prot
  SYNJ1_RRM UniProtKB/Swiss-Prot
KEGG Report rno:85238 UniProtKB/Swiss-Prot
NCBI Gene 85238 ENTREZGENE
PANTHER INOSITOL 5-PHOSPHATASE UniProtKB/Swiss-Prot
  PTHR11200:SF158 UniProtKB/Swiss-Prot
Pfam DUF1866 UniProtKB/Swiss-Prot
  Exo_endo_phos2 UniProtKB/Swiss-Prot
  Syja_N UniProtKB/Swiss-Prot
PhenoGen Synj1 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot
  SAC UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000002051 RatGTEx
SMART DUF1866 UniProtKB/Swiss-Prot
  IPPc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
  SSF56219 UniProtKB/Swiss-Prot
TIGR TC228838
UniProt A0A8I6A4X9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A7J7_RAT UniProtKB/TrEMBL
  A0A8I6AFG5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AHP8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q1A0_RAT UniProtKB/TrEMBL
  A0A8L2QTB1 ENTREZGENE, UniProtKB/TrEMBL
  A6JLD5 ENTREZGENE, UniProtKB/TrEMBL
  A6JLD6 ENTREZGENE, UniProtKB/TrEMBL
  A6JLD7 ENTREZGENE, UniProtKB/TrEMBL
  A6JLD8_RAT UniProtKB/TrEMBL
  A6JLD9_RAT UniProtKB/TrEMBL
  D4ABN3 ENTREZGENE, UniProtKB/TrEMBL
  O89092 ENTREZGENE
  Q62910 ENTREZGENE
  Q62911 ENTREZGENE
  Q810Z8 ENTREZGENE
  SYNJ1_RAT UniProtKB/Swiss-Prot
UniProt Secondary O89092 UniProtKB/Swiss-Prot
  Q62911 UniProtKB/Swiss-Prot
  Q810Z8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Synj1  synaptojanin 1      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_homology amino-terminal domain has homology with yeast Sac1, which plays a role in phospholipid metabolism and in actin cytoskeleton function 69388
gene_physical_interaction binds the SH3 domain of the presynaptic protein amphiphysin 69388