Rab14 (RAB14, member RAS oncogene family)

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Gene: Rab14 (RAB14, member RAS oncogene family) Rattus norvegicus

Analyze

Symbol:

Rab14

Name:

RAB14, member RAS oncogene family

RGD ID:

620881

Description:

Predicted to have GTPase activity; myosin V binding activity; and purine ribonucleoside binding activity. Involved in apical protein localization; body fluid secretion; and regulation of protein localization. Localizes to several cellular components, including Golgi stack; apical plasma membrane; and cytoplasmic vesicle. Orthologous to human RAB14 (RAB14, member RAS oncogene family); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

GTPase Rab14; ras-related protein Rab-14

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RAB14 (RAB14, member RAS oncogene family)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Rab14 (RAB14, member RAS oncogene family)	HGNC	Treefam, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Rab14 (RAB14, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RAB14 (RAB14, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RAB14 (RAB14, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rab14 (RAB14, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RAB14 (RAB14, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	RAB14 (RAB14, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rab14 (RAB14, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Rab14 (RAB14, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	RAB14 (RAB14, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	rab14 (RAB14, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|TreeFam)
Caenorhabditis elegans (roundworm):	rab-14	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Rab14	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	18,501,953 - 18,523,253 (-)	NCBI
Rnor_6.0 Ensembl	3	14,373,275 - 14,395,362 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	14,373,270 - 14,395,357 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	19,691,787 - 19,714,201 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	14,245,693 - 14,255,984 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	14,142,071 - 14,152,356 (-)	NCBI
Celera	3	13,223,275 - 13,233,556 (-)	NCBI		Celera
Cytogenetic Map	3	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (EXP)

3H-1,2-dithiole-3-thione (EXP)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

Aroclor 1254 (ISO)

benzene (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chloroprene (EXP)

chlorpyrifos (EXP)

choline (ISO)

cisplatin (ISO)

cocaine (EXP)

coumestrol (ISO)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

dimethylarsinic acid (EXP)

elemental selenium (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

fenvalerate (EXP)

flavonoids (EXP)

flusilazole (ISO)

folic acid (ISO)

gamma-hexachlorocyclohexane (EXP)

genistein (EXP)

gentamycin (EXP)

hexaconazole (ISO)

L-methionine (ISO)

lead diacetate (ISO)

methoxychlor (EXP)

microcystin RR (ISO)

N-ethyl-N-nitrosourea (EXP)

Nonylphenol (EXP)

pentanal (ISO)

phenobarbital (ISO)

phenol red (ISO)

poly(vinylpyrrolidone) (EXP)

propiconazole (ISO)

resveratrol (ISO)

scopolamine (EXP)

selenium atom (ISO)

silicon dioxide (ISO)

silver atom (EXP)

silver(0) (EXP)

sodium arsenate (ISO)

sodium fluoride (ISO)

succimer (ISO)

testosterone enanthate (ISO)

tetrachloromethane (EXP)

tipifarnib (EXP)

triadimefon (ISO)

trichloroethene (EXP)

valproic acid (ISO)

venlafaxine hydrochloride (EXP)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apical protein localization (IDA)

body fluid secretion (IMP)

defense response to bacterium (IEA)

endocytic recycling (IEA,ISO,ISS)

fibroblast growth factor receptor signaling pathway (IEA,ISO,ISS)

Golgi to endosome transport (IBA,IEA,ISO,ISS,TAS)

intracellular protein transport (IBA)

intracellular transport (NAS)

phagolysosome assembly involved in apoptotic cell clearance (IBA)

phagosome maturation (IEA)

regulation of embryonic development (IEA,ISO,ISS)

regulation of protein localization (IDA,IEA,IMP,ISO)

vesicle-mediated transport (NAS)

Cellular Component

alveolar lamellar body (IDA)

anchored component of synaptic vesicle membrane (EXP,IDA,IMP)

apical plasma membrane (IDA)

cilium (ISO)

cytoplasmic vesicle membrane (TAS)

cytosol (IDA,IEA)

early endosome (IBA,IDA)

early endosome membrane (IEA)

endomembrane system (IBA)

Golgi membrane (IEA)

Golgi stack (IDA)

intracellular membrane-bounded organelle (ISO)

late endosome (IDA)

lysosome (IDA)

nuclear outer membrane-endoplasmic reticulum membrane network (IDA)

perinuclear region of cytoplasm (IDA)

phagocytic vesicle (IBA,IEA,ISO,ISS)

plasma membrane (IDA)

recycling endosome (IEA,ISO,ISS)

rough endoplasmic reticulum (IDA)

trans-Golgi network (IEA)

trans-Golgi network transport vesicle (IDA)

transport vesicle (IDA)

Molecular Function

GDP binding (IEA,ISO,ISS)

GTP binding (IEA,ISO,ISS)

GTPase activity (IBA,IEA,ISO,ISS,NAS)

myosin V binding (IEA,ISO)

protein binding (IPI,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

insulin responsive facilitative sugar transporter mediated glucose transport pathway (IMP,ISO)

Rab family mediated signaling pathway (ISO)

References

References - curated


1.	Elferink LA, etal., J Biol Chem 1992 Mar 25;267(9):5768-75.
2.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Gou D, etal., J Biol Chem. 2008 May 9;283(19):13156-64. Epub 2008 Mar 10.
4.	Ishikura S and Klip A, Am J Physiol Cell Physiol. 2008 Oct;295(4):C1016-25. Epub 2008 Aug 13.
5.	Junutula JR, etal., Mol Biol Cell. 2004 May;15(5):2218-29. Epub 2004 Mar 5.
6.	Kaddai V, etal., Acta Physiol (Oxf). 2008 Jan;192(1):75-88.
7.	Kitt KN, etal., Traffic. 2008 Jul;9(7):1218-31. Epub 2008 Apr 21.
8.	Kuijl C, etal., EMBO J. 2013 Mar 6;32(5):713-27. doi: 10.1038/emboj.2013.10. Epub 2013 Feb 5.
9.	Larance M, etal., Mol Endocrinol. 2008 Feb;22(2):226-33. Epub 2007 Aug 23.
10.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
11.	Pavlos NJ, etal., J Neurosci. 2010 Oct 6;30(40):13441-53. doi: 10.1523/JNEUROSCI.0907-10.2010.
12.	RGD automated data pipeline
13.	RGD automated import pipeline for gene-chemical interactions
14.	Topalidou I, etal., PLoS Genet. 2016 May 18;12(5):e1006074. doi: 10.1371/journal.pgen.1006074. eCollection 2016 May.
15.	Watson RT and Pessin JE, Cell Signal. 2007 Nov;19(11):2209-17. Epub 2007 Jun 21.
16.	Zaid H, etal., Biochem J. 2008 Jul 15;413(2):201-15.

Additional References at PubMed

PMID:12477932	PMID:16034420	PMID:16902405	PMID:17562788	PMID:17646400	PMID:17897319	PMID:19056867	PMID:20458337	PMID:21238925	PMID:21255211	PMID:22082260	PMID:22595670
PMID:22871113	PMID:23376485	PMID:24006491	PMID:24625528	PMID:29476059

Genomics

Comparative Map Data

Rab14
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	18,501,953 - 18,523,253 (-)	NCBI
Rnor_6.0 Ensembl	3	14,373,275 - 14,395,362 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	14,373,270 - 14,395,357 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	19,691,787 - 19,714,201 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	14,245,693 - 14,255,984 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	14,142,071 - 14,152,356 (-)	NCBI
Celera	3	13,223,275 - 13,233,556 (-)	NCBI		Celera
Cytogenetic Map	3	p11	NCBI

RAB14
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	9	121,178,133 - 121,223,014 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	9	121,178,133 - 121,201,869 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	9	123,940,411 - 123,964,147 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	122,980,237 - 123,003,913 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	9	121,019,968 - 121,043,640	NCBI
Celera	9	94,588,887 - 94,612,841 (-)	NCBI
Cytogenetic Map	9	q33.2	NCBI
HuRef	9	93,558,160 - 93,582,112 (-)	NCBI		HuRef
CHM1_1	9	124,087,307 - 124,111,257 (-)	NCBI		CHM1_1

Rab14
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	35,070,217 - 35,091,132 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	2	35,070,217 - 35,091,132 (-)	Ensembl
GRCm38	2	35,180,205 - 35,201,120 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	35,180,205 - 35,201,120 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	35,035,725 - 35,056,640 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	35,002,214 - 35,023,129 (-)	NCBI			mm8
Celera	2	34,874,701 - 34,895,616 (-)	NCBI		Celera
Cytogenetic Map	2	B	NCBI

Rab14
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	6,790,707 - 6,812,870 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	6,790,110 - 6,812,870 (+)	NCBI	ChiLan1.0	ChiLan1.0

RAB14
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	9	120,652,075 - 120,674,784 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	120,654,180 - 120,666,170 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	9	92,305,656 - 92,329,419 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

RAB14
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	11	74,159,414 - 74,172,810 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	11	74,157,497 - 74,172,817 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Rab14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936487	9,675,517 - 9,699,469 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAB14
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	261,228,673 - 261,256,791 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	261,228,112 - 261,256,913 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	293,477,523 - 293,506,262 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAB14
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	18,382,118 - 18,406,353 (+)	NCBI
ChlSab1.1 Ensembl	12	18,390,806 - 18,403,185 (+)	Ensembl

Rab14
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624760	14,069,403 - 14,096,684 (+)	NCBI

Position Markers

RH136853

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	14,381,169 - 14,381,363	NCBI	Rnor6.0
Rnor_5.0	3	19,699,686 - 19,699,880	UniSTS	Rnor5.0
RGSC_v3.4	3	14,251,624 - 14,251,818	UniSTS	RGSC3.4
Celera	3	13,229,206 - 13,229,400	UniSTS
RH 3.4 Map	3	163.0	UniSTS
Cytogenetic Map	3	p11	UniSTS

AU048931

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	14,383,530 - 14,383,714	NCBI	Rnor6.0
Rnor_5.0	3	19,702,047 - 19,702,231	UniSTS	Rnor5.0
RGSC_v3.4	3	14,253,985 - 14,254,169	UniSTS	RGSC3.4
Celera	3	13,231,567 - 13,231,741	UniSTS
Cytogenetic Map	3	p11	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	1	25786001	Rat
70202	Alc19	Alcohol consumption QTL 19	2.5		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	3	1	28136884	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	28500807	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	diastolic blood pressure (CMO:0000005)	3	1	28500807	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	1	28500807	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	pulse pressure (CMO:0000292)	3	1	28500807	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	1	32972944	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	1	37891710	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	39773425	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	95176874	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	2631421	33477544	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	2631421	48562146	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	3285929	28136884	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	3285929	28136884	Rat
8693641	Alc30	Alcohol consumption QTL 30	2	0.739	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	3	5654639	25105730	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	6000748	34394365	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	6000748	34394365	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	6000748	34394365	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	3	6000748	51687917	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	3	6000748	51687917	Rat
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	6000866	34394121	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	6000866	34394121	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	0.0000000293	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	6000866	34394121	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10094081	93415837	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	10119318	79772001	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
11528620	Bss113	Bone structure and strength QTL 113	9.75	0.00000000017	femur morphology trait (VT:0000559)	femoral neck width (CMO:0001695)	3	12236221	15217668	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	heart rate (CMO:0000002)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	heart rate (CMO:0000002)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	body weight (CMO:0000012)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	body weight (CMO:0000012)	3	13126914	36600143	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	13126914	41510346	Rat
2325840	Bp345	Blood pressure QTL 345		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14090411	29084626	Rat
731172	Bp151	Blood pressure QTL 151		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14090411	48562146	Rat
12879849	Bw180	Body weight QTL 180		0.037	body mass (VT:0001259)	body weight (CMO:0000012)	3	14090411	48562146	Rat
12879850	Cm91	Cardiac mass QTL 91		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	14090411	48562146	Rat
12879851	Cm92	Cardiac mass QTL 92		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	14090411	48562146	Rat
12879852	Cm93	Cardiac mass QTL 93		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	14090411	48562146	Rat
12879853	Am5	Aortic mass QTL 5		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	14090411	48562146	Rat
12879854	Kidm63	Kidney mass QTL 63		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	14090411	48562146	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	149
Count of miRNA genes:	107
Interacting mature miRNAs:	112
Transcripts:	ENSRNOT00000025649
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC158585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M83680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000025649 ⟹ ENSRNOP00000025649

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	14,373,275 - 14,386,118 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000092787 ⟹ ENSRNOP00000075991

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	14,382,918 - 14,395,362 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000093109

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	14,376,688 - 14,377,762 (-)	Ensembl

RefSeq Acc Id:

NM_053589 ⟹ NP_446041

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	18,503,923 - 18,514,214 (-)	NCBI
Rnor_6.0	3	14,375,238 - 14,385,529 (-)	NCBI
Rnor_5.0	3	19,691,787 - 19,714,201 (-)	NCBI
RGSC_v3.4	3	14,245,693 - 14,255,984 (-)	RGD
Celera	3	13,223,275 - 13,233,556 (-)	RGD

Sequence:

show sequence

GCCACCATGGCAACTACACCGTACAACTACTCTTACATCTTTAAGTATATTATTATCGGGGATA
TGGGAGTAGGAAAATCTTGCTTGCTTCATCAATTTACAGAAAAAAAGTTTATGGCTGATTGTCC
TCACACAATTGGTGTTGAATTTGGTACAAGAATAATTGAAGTTAGTGGCCAAAAAATCAAACTG
CAGATTTGGGATACAGCAGGACAGGAGAGGTTCAGAGCTGTTACACGGAGCTACTATAGAGGAG
CTGCAGGTGCGCTCATGGTGTATGACATCACCAGAAGAAGTACATATAACCACTTAAGCAGCTG
GTTGACAGATGCAAGGAACCTCACCAACCCAAACACTGTAATAATTCTCATAGGAAATAAAGCA
GATTTGGAAGCACAGAGAGATGTTACCTATGAAGAAGCCAAACAGTTTGCTGAAGAAAACGGCT
TATTGTTCCTTGAAGCAAGTGCAAAAACGGGAGAGAATGTAGAAGATGCTTTTCTTGAGGCTGC
CAAGAAAATCTATCAGAACATTCAGGATGGAAGCCTGGATCTGAATGCTGCCGAGTCTGGTGTA
CAACACAAACCCTCAGCCCCGCAGGGAGGACGGCTAACCAGTGAACCCCAACCCCAGAGAGAAG
GCTGTGGCTGCTAGTGACCTCTTTGCTCTGGTCCCTCATTTTGACCTTTCACCTCTTGTCTGTT
GGAAGCAGTACTTTTTACTGCCTTCTTGTCTTCTGTACATCTTACTGGGGTTTAATTAAAAAAA
AAAAAA

hide sequence

RefSeq Acc Id:

XM_006234049 ⟹ XP_006234111

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	18,501,953 - 18,523,253 (-)	NCBI
Rnor_6.0	3	14,373,270 - 14,395,357 (-)	NCBI
Rnor_5.0	3	19,691,787 - 19,714,201 (-)	NCBI

Sequence:

show sequence

CCGCCCCTTCAGGCGTGAGGACCAGTGGGACGGGCTGAGGCCGAGGCGGGTCTACTCCAAAGGG
GCAAACTGAGGAAGGGGCGTGGCCGTCAGGTCGGTCTCCAACACCCTCTTCCGGGCTCCGCTGG
CTGCGCGCGCATCCTCCCCCCTTCTTTTGTGGTCCGGCCCATTGCGAGGGTGACAGGAAACCCT
GTGCAGGGAGCGCCGCCATCTTGGGCCAGCCCGAGGAAGATCCTGAGGGAGCCGCAGGAGCAGC
CGCCGCCACCACCGCGACTACCTCCCGAGTGTCTGCAACCTCAGGCCAGCCCGCCTTCCTGCCA
GTGCCTTGGCCGACGGATTCCGGCCGCCCTCCCGCCGCGTCCGCCCTCCGCTTCCTCGTCCTGA
CGTCCCCCTCCCGTCCGGAAAGCTGCCCAGCCACCAGCAACCCCCCAGTGCCACCATGGCAACT
GCACCGTACAACTACTCTTACATCTTTAAGTATATTATTATTGGGGATATGGGAGTAGGAAAAT
CTTGCTTGCTTCATCAATTTACAGAAAAAAAGTTTATGGCTGATTGTCCTCACACAATTGGTGT
TGAATTTGGTACAAGAATAATTGAAGTTAGTGGCCAAAAAATCAAACTGCAGATTTGGGATACA
GCAGGACAGGAGAGGTTCAGAGCTGTTACACGGAGCTACTATAGAGGAGCTGCAGGTGCGCTCA
TGGTGTATGACATCACCAGAAGAAGTACATATAACCACTTAAGCAGCTGGTTGACAGATGCAAG
GAACCTCACCAACCCAAACACTGTAATAATTCTCATAGGAAATAAAGCAGATTTGGAAGCACAG
AGAGATGTTACCTATGAAGAAGCCAAACAGTTTGCTGAAGAAAACGGCTTATTGTTCCTTGAAG
CAAGTGCAAAAACGGGAGAGAATGTAGAAGATGCTTTTCTTGAGGCTGCCAAGAAAATCTATCA
GAACATTCAGGATGGAAGCCTGGATCTGAATGCTGCCGAGTCTGGTGTACAACACAAACCCTCA
GCCCCGCAGGGAGGACGGCTAACCAGTGAACCCCAACCCCAGAGAGAAGGCTGTGGCTGCTAGT
GACCTCTTTGCTCTGGTCCCTCATTTGACCTTTCACCTCTGTCTGTTGGAAGCAGTACTTTTTA
CTGCCTTCTTGTCTTCTGTACATCTTACTGGGTTTAATTAAAAAAAGAAAAAACAACTCTTGTA
AAAACAGTTTAACAATACTAAACTGCTAAACAACTAGATGTAATCAGGTTATCAAAGGCAAGTA
GAGTAATAAATCTCTCCTGCATGGTAAATCTAGACTTCCCCCTTTGATTGTCCTTGTGATAGGT
TTGTCACCAATCTATGATTTAAACTGAGCACTGATGCTGGACCTGATTTTTACCTTCCCTTTGG
CAAGGCTTTGTCTAACTGTACGGTTTAAATTTGATCTTTTCAGCCTTTCTCCCATCTTTCAACT
GTTGAGTATGTCTGTTGTAGCCAGTAAGTTCACTGCTGTGAAATGACTTCTGATGGTAGAGAAA
AGGGTCTGCAACTGCTTTTGTTTTTGTTGGATAAATTCCCTGTTGTAGGGGTGGCATTTTTCTT
GATGAGGTTTGCTTCTGTCTTAGCCTTGCACAGGGAAAAATACCCATTTATCTTTTCTTGTGCT
TAATAGCTTTATCTTTTTTTTAAATTTTTACACTATCTTATTCTTTTCTCTTTAACAGAAAGTA
AATATGTATAAAATTTGAAGGAACCTAACTAACAATACCTTCTGTGTATATTATTTTAATGAAG
AAAATAAATTGATTACTGGCATTGGAACAGTATAAAATACCAGTTTGTACAGTGTGACCTATAT
GTGACCATGTTACTCTCTTCCATTTCACACAAGGAAATAGACACAGCTGCAGTTCACAAGTAAC
ACTGGCTCCACTCCTTGGTGCTGGCAGTGTTTGGGGACAGACATAATGCTGGAAAGAGCTCCTG
GCATCAGCGGAAACACTAGCGGATTCTATTCCATCTTCCCACTGGGGCTTACCTGCTGATTTCT
TTTTTTTAACTGTTCTTGTGTAATCAACGTGCTCACCTGCTTTTCTTTTTGTAAACATTTTGTG
TTATAGGCTGCATTCTTGCCTTACTGTATAGAAAAAGGAAGAAGGCTGGGTTTAATATTGCACA
TTTTAAGCTTTTATACCTTTATCTTAGAATGGTCAACTTCTGGACCAGATAGCCAGAACCACAG
GTCTGCTGTTAAGGGATTTTAAATTGTGCATTTTTAACACTACAGTGAAATAATTTGGTATTAT
CCTTTGTGTTCATAGTTTGAGGGGCTATTTTATGTCATGTTGGCATAAATTGTTTTGTAAAAGG
GAAGGTGTTTCTAAATGTGTGCACTGAAATAACGTAAGTCACTGCTTTGCACTGGGTGGTCTGG
CCACGGGAAGAACACCACCTTGCAAGAGGAAGCGATCTCGGCAGCACCTGCTTCACTCAGTTCT
TCCCTTCTCTTGGTTTCTAGCAGAGTTTAAAATGGCTGAGAATTGAGAGGTCATTGGAAATGCA
CGTAGGTAAGCCTGAGCACATTATATAAAATGCTCCTAGCTCAATGCTGTGTTTAAAATACACA
TTTTAAATCCCTCTTTACCAGACACTAATGTAAAAGTACATCTTCTGGATTATAAACATGTGGT
TCCAGAGTTTTGTATAGTCAATGTTAAATAAAAGCCAAAACTGGAATGTGCAGAAAATAGGATT
CGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTGGATTCACCGTTTTTGTCCTTGTTTA
ACTTACAGGAATCTTGGCGTAGGCTGGTATGTTCTGTTAAAGACTTAGCGTGATCCATTTGCTT
ATATACTGTTGCATCACAAGGGATTCACCCAGGGACCATGGCCTGCTGGTGTGTGTATATATTT
ACAGAACAAATCACCCATGGGGATATAAGGTGGCAATCACAAAGTAAAGACCCTCGGCCTGTTT
AGGTGCAATACCCCAGTTCCCAAAGTTAGTTACAGTGGGTCTCAATTGTTTTTGTGACAGAAGG
ATTTATTCAGACTGCTGTACTCTTTATTTGATGTAACAAAATGCTATTATCTAAATATTTGTAA
ATAAAGTACCTGTATCTAGATTAAATTGAA

hide sequence

RefSeq Acc Id:

XM_006234050 ⟹ XP_006234112

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	14,373,270 - 14,394,539 (-)	NCBI
Rnor_5.0	3	19,691,787 - 19,714,201 (-)	NCBI

Sequence:

show sequence

CCCCAGCCGTGGCAGTCCCACCTTACAGGGCCTCATCTTACAAAAGGCCCCGCATCGGCATCTC
GGGCTGCCTCCCGTGTCCTTTGCCACCATGGCAACTGCACCGTACAACTACTCTTACATCTTTA
AGTATATTATTATTGGGGATATGGGAGTAGGAAAATCTTGCTTGCTTCATCAATTTACAGAAAA
AAAGTTTATGGCTGATTGTCCTCACACAATTGGTGTTGAATTTGGTACAAGAATAATTGAAGTT
AGTGGCCAAAAAATCAAACTGCAGATTTGGGATACAGCAGGACAGGAGAGGTTCAGAGCTGTTA
CACGGAGCTACTATAGAGGAGCTGCAGGTGCGCTCATGGTGTATGACATCACCAGAAGAAGTAC
ATATAACCACTTAAGCAGCTGGTTGACAGATGCAAGGAACCTCACCAACCCAAACACTGTAATA
ATTCTCATAGGAAATAAAGCAGATTTGGAAGCACAGAGAGATGTTACCTATGAAGAAGCCAAAC
AGTTTGCTGAAGAAAACGGCTTATTGTTCCTTGAAGCAAGTGCAAAAACGGGAGAGAATGTAGA
AGATGCTTTTCTTGAGGCTGCCAAGAAAATCTATCAGAACATTCAGGATGGAAGCCTGGATCTG
AATGCTGCCGAGTCTGGTGTACAACACAAACCCTCAGCCCCGCAGGGAGGACGGCTAACCAGTG
AACCCCAACCCCAGAGAGAAGGCTGTGGCTGCTAGTGACCTCTTTGCTCTGGTCCCTCATTTGA
CCTTTCACCTCTGTCTGTTGGAAGCAGTACTTTTTACTGCCTTCTTGTCTTCTGTACATCTTAC
TGGGTTTAATTAAAAAAAGAAAAAACAACTCTTGTAAAAACAGTTTAACAATACTAAACTGCTA
AACAACTAGATGTAATCAGGTTATCAAAGGCAAGTAGAGTAATAAATCTCTCCTGCATGGTAAA
TCTAGACTTCCCCCTTTGATTGTCCTTGTGATAGGTTTGTCACCAATCTATGATTTAAACTGAG
CACTGATGCTGGACCTGATTTTTACCTTCCCTTTGGCAAGGCTTTGTCTAACTGTACGGTTTAA
ATTTGATCTTTTCAGCCTTTCTCCCATCTTTCAACTGTTGAGTATGTCTGTTGTAGCCAGTAAG
TTCACTGCTGTGAAATGACTTCTGATGGTAGAGAAAAGGGTCTGCAACTGCTTTTGTTTTTGTT
GGATAAATTCCCTGTTGTAGGGGTGGCATTTTTCTTGATGAGGTTTGCTTCTGTCTTAGCCTTG
CACAGGGAAAAATACCCATTTATCTTTTCTTGTGCTTAATAGCTTTATCTTTTTTTTAAATTTT
TACACTATCTTATTCTTTTCTCTTTAACAGAAAGTAAATATGTATAAAATTTGAAGGAACCTAA
CTAACAATACCTTCTGTGTATATTATTTTAATGAAGAAAATAAATTGATTACTGGCATTGGAAC
AGTATAAAATACCAGTTTGTACAGTGTGACCTATATGTGACCATGTTACTCTCTTCCATTTCAC
ACAAGGAAATAGACACAGCTGCAGTTCACAAGTAACACTGGCTCCACTCCTTGGTGCTGGCAGT
GTTTGGGGACAGACATAATGCTGGAAAGAGCTCCTGGCATCAGCGGAAACACTAGCGGATTCTA
TTCCATCTTCCCACTGGGGCTTACCTGCTGATTTCTTTTTTTTAACTGTTCTTGTGTAATCAAC
GTGCTCACCTGCTTTTCTTTTTGTAAACATTTTGTGTTATAGGCTGCATTCTTGCCTTACTGTA
TAGAAAAAGGAAGAAGGCTGGGTTTAATATTGCACATTTTAAGCTTTTATACCTTTATCTTAGA
ATGGTCAACTTCTGGACCAGATAGCCAGAACCACAGGTCTGCTGTTAAGGGATTTTAAATTGTG
CATTTTTAACACTACAGTGAAATAATTTGGTATTATCCTTTGTGTTCATAGTTTGAGGGGCTAT
TTTATGTCATGTTGGCATAAATTGTTTTGTAAAAGGGAAGGTGTTTCTAAATGTGTGCACTGAA
ATAACGTAAGTCACTGCTTTGCACTGGGTGGTCTGGCCACGGGAAGAACACCACCTTGCAAGAG
GAAGCGATCTCGGCAGCACCTGCTTCACTCAGTTCTTCCCTTCTCTTGGTTTCTAGCAGAGTTT
AAAATGGCTGAGAATTGAGAGGTCATTGGAAATGCACGTAGGTAAGCCTGAGCACATTATATAA
AATGCTCCTAGCTCAATGCTGTGTTTAAAATACACATTTTAAATCCCTCTTTACCAGACACTAA
TGTAAAAGTACATCTTCTGGATTATAAACATGTGGTTCCAGAGTTTTGTATAGTCAATGTTAAA
TAAAAGCCAAAACTGGAATGTGCAGAAAATAGGATTCGGGTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTGGGTGGATTCACCGTTTTTGTCCTTGTTTAACTTACAGGAATCTTGGCGTAGGCTGGT
ATGTTCTGTTAAAGACTTAGCGTGATCCATTTGCTTATATACTGTTGCATCACAAGGGATTCAC
CCAGGGACCATGGCCTGCTGGTGTGTGTATATATTTACAGAACAAATCACCCATGGGGATATAA
GGTGGCAATCACAAAGTAAAGACCCTCGGCCTGTTTAGGTGCAATACCCCAGTTCCCAAAGTTA
GTTACAGTGGGTCTCAATTGTTTTTGTGACAGAAGGATTTATTCAGACTGCTGTACTCTTTATT
TGATGTAACAAAATGCTATTATCTAAATATTTGTAAATAAAGTACCTGTATCTAGATTAAATTG
AA

hide sequence

Protein Sequences


Protein RefSeqs	NP_446041	(Get FASTA)	NCBI Sequence Viewer
	XP_006234111	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA41994	(Get FASTA)	NCBI Sequence Viewer
	AAI58586	(Get FASTA)	NCBI Sequence Viewer
	EDL93150	(Get FASTA)	NCBI Sequence Viewer
	P61107	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_446041 ⟸ NM_053589

- Sequence:

show sequence

MATTPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI
WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL
EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQH
KPSAPQGGRLTSEPQPQREGCGC

hide sequence

RefSeq Acc Id:	XP_006234111 ⟸ XM_006234049
- Peptide Label:	isoform X1
- UniProtKB:	B0BMW0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQH KPSAPQGGRLTSEPQPQREGCGC hide sequence

RefSeq Acc Id:

XP_006234112 ⟸ XM_006234050

- Peptide Label:

isoform X1

- Sequence:

show sequence

MATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI
WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL
EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQH
KPSAPQGGRLTSEPQPQREGCGC

hide sequence

RefSeq Acc Id:

ENSRNOP00000075991 ⟸ ENSRNOT00000092787

RefSeq Acc Id:

ENSRNOP00000025649 ⟸ ENSRNOT00000025649

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692016

Promoter ID:

EPDNEW_R2540

Type:

initiation region

Name:

Rab14_1

Description:

RAB14, member RAS oncogene family

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	14,395,143 - 14,395,203	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620881	AgrOrtholog
Ensembl Genes	ENSRNOG00000018901	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000025649	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000075991	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000025649	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000092787	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7446356	IMAGE-MGC_LOAD
InterPro	P-loop_NTPase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Rab14	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Small_GTP-bd_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Small_GTPase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:94197	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:187348	IMAGE-MGC_LOAD
NCBI Gene	94197	ENTREZGENE
Pfam	Ras	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Rab14	PhenoGen
PROSITE	RAB	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs	small_GTP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A1B0GWR3_RAT	UniProtKB/TrEMBL
	B0BMW0	ENTREZGENE, UniProtKB/TrEMBL
	P61107	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	P35287	UniProtKB/Swiss-Prot
	Q969L0	UniProtKB/Swiss-Prot
	Q9UI11	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Rab14	RAB14, member RAS oncogene family		GTPase Rab14	Name updated	1299863	APPROVED
2002-08-07	Rab14	GTPase Rab14			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_product	member of a family of low molecular weight GTP-binding proteins	633184

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

RGD Manual Annotations