Sec31a (SEC31 homolog A, COPII coat complex component) - Rat Genome Database

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Gene: Sec31a (SEC31 homolog A, COPII coat complex component) Rattus norvegicus
Analyze
Symbol: Sec31a
Name: SEC31 homolog A, COPII coat complex component
RGD ID: 620233
Description: Predicted to enable calcium-dependent protein binding activity and structural molecule activity. Predicted to be involved in COPII-coated vesicle cargo loading; endoplasmic reticulum organization; and response to calcium ion. Located in endosome. Human ortholog(s) of this gene implicated in Halperin-Birk syndrome. Orthologous to human SEC31A (SEC31 homolog A, COPII coat complex component); PARTICIPATES IN Endoplasmic Reticulum-associated degradation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC93320; protein transport protein Sec31A; SEC31 homolog A; SEC31 homolog A (S. cerevisiae); SEC31 homolog A, COPII coating complex component; SEC31-like 1; SEC31-like 1 (S. cerevisiae); SEC31-like protein 1; SEC31-related protein A; Sec31l1; VAP1; vesicle associated protein; vesicle-associated protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,518,655 - 9,573,579 (+)NCBIGRCr8
mRatBN7.2149,214,324 - 9,269,281 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl149,214,349 - 9,269,273 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx149,186,187 - 9,240,986 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01410,486,059 - 10,540,858 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0149,182,662 - 9,237,463 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01410,854,713 - 10,909,579 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1410,854,682 - 10,909,612 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01410,801,850 - 10,856,889 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41410,466,582 - 10,522,655 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11410,466,581 - 10,522,655 (+)NCBI
Celera149,321,723 - 9,376,348 (+)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dimethoxyphenol  (ISO)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
clozapine  (ISO)
cobalt dichloride  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
ethyl methanesulfonate  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furfural  (ISO)
gamma-hexachlorocyclohexane  (EXP)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
inulin  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
Mesaconitine  (EXP)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
mitoxantrone  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-acetyl-L-cysteine  (ISO)
Nutlin-3  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (EXP)
phenylmercury acetate  (ISO)
piroxicam  (ISO)
propiconazole  (EXP)
Propiverine  (EXP)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
tamibarotene  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
thapsigargin  (EXP,ISO)
thiram  (ISO)
tolcapone  (EXP)
triphenyl phosphate  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Antibodies to an epitope on synapsin I detect a protein associated with the endocytic compartment in non-neuronal cells. Matovcik LM, etal., Eur J Cell Biol 1994 Dec;65(2):327-40.
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16957052   PMID:17196169   PMID:17499046   PMID:18843296   PMID:19401338   PMID:21640725   PMID:22358839   PMID:22792322   PMID:22802641   PMID:24239381   PMID:25002582  
PMID:25201882   PMID:26514267   PMID:27716508   PMID:28442536   PMID:28627649   PMID:29716612   PMID:30053369   PMID:30361391   PMID:35659652  


Genomics

Comparative Map Data
Sec31a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,518,655 - 9,573,579 (+)NCBIGRCr8
mRatBN7.2149,214,324 - 9,269,281 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl149,214,349 - 9,269,273 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx149,186,187 - 9,240,986 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01410,486,059 - 10,540,858 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0149,182,662 - 9,237,463 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01410,854,713 - 10,909,579 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1410,854,682 - 10,909,612 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01410,801,850 - 10,856,889 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41410,466,582 - 10,522,655 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11410,466,581 - 10,522,655 (+)NCBI
Celera149,321,723 - 9,376,348 (+)NCBICelera
Cytogenetic Map14p22NCBI
SEC31A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38482,818,509 - 82,900,569 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl482,818,509 - 82,901,166 (-)EnsemblGRCh38hg38GRCh38
GRCh37483,739,662 - 83,821,722 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36483,958,838 - 84,031,424 (-)NCBINCBI36Build 36hg18NCBI36
Build 34484,096,993 - 84,169,579NCBI
Celera481,030,957 - 81,102,991 (-)NCBICelera
Cytogenetic Map4q21.22NCBI
HuRef479,479,736 - 79,553,039 (-)NCBIHuRef
CHM1_1483,716,332 - 83,788,863 (-)NCBICHM1_1
T2T-CHM13v2.0486,147,772 - 86,229,788 (-)NCBIT2T-CHM13v2.0
Sec31a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395100,509,508 - 100,564,132 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5100,509,508 - 100,564,093 (-)EnsemblGRCm39 Ensembl
GRCm385100,361,649 - 100,416,273 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5100,361,649 - 100,416,234 (-)EnsemblGRCm38mm10GRCm38
MGSCv375100,790,668 - 100,845,253 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365100,601,947 - 100,662,097 (-)NCBIMGSCv36mm8
Celera597,687,421 - 97,742,015 (-)NCBICelera
Cytogenetic Map5E4NCBI
cM Map548.48NCBI
Sec31a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554336,830,540 - 6,891,258 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554336,830,732 - 6,891,259 (-)NCBIChiLan1.0ChiLan1.0
SEC31A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2347,179,928 - 47,252,488 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1447,369,105 - 47,447,681 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0441,312,389 - 41,384,924 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1447,164,207 - 47,236,223 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl447,173,348 - 47,235,812 (+)Ensemblpanpan1.1panPan2
SEC31A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1326,761,018 - 6,840,802 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl326,761,289 - 6,840,709 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3235,044,306 - 35,123,841 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0326,782,111 - 6,862,117 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl326,782,111 - 6,862,121 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1326,852,892 - 6,933,085 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0326,722,105 - 6,801,751 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03233,164,400 - 33,244,629 (+)NCBIUU_Cfam_GSD_1.0
Sec31a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052855,503,050 - 5,580,731 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367381,676,436 - 1,744,896 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367381,664,916 - 1,741,739 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC31A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8135,426,403 - 135,495,121 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18135,431,965 - 135,495,124 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28144,727,204 - 144,774,058 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEC31A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1731,207,349 - 31,288,484 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl731,207,089 - 31,288,574 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660379,776,537 - 9,857,889 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sec31a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247578,040,894 - 8,122,785 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sec31a
460 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:337
Count of miRNA genes:180
Interacting mature miRNAs:205
Transcripts:ENSRNOT00000003072, ENSRNOT00000033489
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14381307418274691Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14121760611030812Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14121760616960180Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat

Markers in Region
RH140247  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2149,269,068 - 9,269,249 (+)MAPPERmRatBN7.2
Rnor_6.01410,909,372 - 10,909,552NCBIRnor6.0
Rnor_5.01410,856,682 - 10,856,862UniSTSRnor5.0
RGSC_v3.41410,522,451 - 10,522,631UniSTSRGSC3.4
Celera149,376,144 - 9,376,324UniSTS
Cytogenetic Map14p22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_033021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC099384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF034582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000003072   ⟹   ENSRNOP00000003072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl149,214,422 - 9,269,273 (+)Ensembl
Rnor_6.0 Ensembl1410,854,737 - 10,909,576 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000033489   ⟹   ENSRNOP00000038196
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl149,214,349 - 9,269,271 (+)Ensembl
Rnor_6.0 Ensembl1410,854,752 - 10,909,571 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091367   ⟹   ENSRNOP00000071621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl149,214,385 - 9,269,273 (+)Ensembl
Rnor_6.0 Ensembl1410,854,682 - 10,909,612 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097169   ⟹   ENSRNOP00000079808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl149,214,415 - 9,269,266 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116260   ⟹   ENSRNOP00000085826
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl149,214,385 - 9,269,273 (+)Ensembl
RefSeq Acc Id: NM_033021   ⟹   NP_148981
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,737 - 9,573,578 (+)NCBI
mRatBN7.2149,214,422 - 9,269,273 (+)NCBI
Rnor_6.01410,854,737 - 10,909,576 (+)NCBI
Rnor_5.01410,801,850 - 10,856,889 (+)NCBI
RGSC_v3.41410,466,582 - 10,522,655 (+)RGD
Celera149,321,723 - 9,376,348 (+)RGD
Sequence:
RefSeq Acc Id: XM_006250677   ⟹   XP_006250739
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,662 - 9,573,579 (+)NCBI
mRatBN7.2149,214,325 - 9,269,281 (+)NCBI
Rnor_6.01410,854,713 - 10,909,579 (+)NCBI
Rnor_5.01410,801,850 - 10,856,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250678   ⟹   XP_006250740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
mRatBN7.2149,214,324 - 9,269,281 (+)NCBI
Rnor_6.01410,854,907 - 10,909,579 (+)NCBI
Rnor_5.01410,801,850 - 10,856,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250679   ⟹   XP_006250741
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
mRatBN7.2149,214,324 - 9,269,281 (+)NCBI
Rnor_6.01410,854,907 - 10,909,579 (+)NCBI
Rnor_5.01410,801,850 - 10,856,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250680   ⟹   XP_006250742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
mRatBN7.2149,214,324 - 9,269,281 (+)NCBI
Rnor_6.01410,854,907 - 10,909,579 (+)NCBI
Rnor_5.01410,801,850 - 10,856,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250681   ⟹   XP_006250743
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
mRatBN7.2149,214,325 - 9,269,281 (+)NCBI
Rnor_6.01410,854,907 - 10,909,579 (+)NCBI
Rnor_5.01410,801,850 - 10,856,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250682   ⟹   XP_006250744
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
mRatBN7.2149,214,324 - 9,269,281 (+)NCBI
Rnor_6.01410,854,907 - 10,909,579 (+)NCBI
Rnor_5.01410,801,850 - 10,856,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250683   ⟹   XP_006250745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
mRatBN7.2149,214,325 - 9,269,281 (+)NCBI
Rnor_6.01410,854,907 - 10,909,579 (+)NCBI
Rnor_5.01410,801,850 - 10,856,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250684   ⟹   XP_006250746
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
mRatBN7.2149,214,325 - 9,269,281 (+)NCBI
Rnor_6.01410,854,907 - 10,909,579 (+)NCBI
Rnor_5.01410,801,850 - 10,856,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250685   ⟹   XP_006250747
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
mRatBN7.2149,214,325 - 9,269,281 (+)NCBI
Rnor_6.01410,854,907 - 10,909,579 (+)NCBI
Rnor_5.01410,801,850 - 10,856,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250686   ⟹   XP_006250748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
mRatBN7.2149,214,325 - 9,269,281 (+)NCBI
Rnor_6.01410,854,907 - 10,909,579 (+)NCBI
Rnor_5.01410,801,850 - 10,856,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250687   ⟹   XP_006250749
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
mRatBN7.2149,214,325 - 9,269,281 (+)NCBI
Rnor_6.01410,854,907 - 10,909,579 (+)NCBI
Rnor_5.01410,801,850 - 10,856,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250688   ⟹   XP_006250750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
mRatBN7.2149,214,326 - 9,269,281 (+)NCBI
Rnor_6.01410,854,907 - 10,909,579 (+)NCBI
Rnor_5.01410,801,850 - 10,856,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250689   ⟹   XP_006250751
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
mRatBN7.2149,214,326 - 9,269,281 (+)NCBI
Rnor_6.01410,854,907 - 10,909,579 (+)NCBI
Rnor_5.01410,801,850 - 10,856,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250690   ⟹   XP_006250752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,662 - 9,573,579 (+)NCBI
mRatBN7.2149,214,326 - 9,269,281 (+)NCBI
Rnor_6.01410,854,713 - 10,909,579 (+)NCBI
Rnor_5.01410,801,850 - 10,856,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039092523   ⟹   XP_038948451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
mRatBN7.2149,214,326 - 9,269,281 (+)NCBI
RefSeq Acc Id: XM_063273696   ⟹   XP_063129766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,662 - 9,573,579 (+)NCBI
RefSeq Acc Id: XM_063273697   ⟹   XP_063129767
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
RefSeq Acc Id: XM_063273698   ⟹   XP_063129768
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,662 - 9,573,579 (+)NCBI
RefSeq Acc Id: XM_063273699   ⟹   XP_063129769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
RefSeq Acc Id: XM_063273700   ⟹   XP_063129770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
RefSeq Acc Id: XM_063273701   ⟹   XP_063129771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
RefSeq Acc Id: XM_063273702   ⟹   XP_063129772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
RefSeq Acc Id: XM_063273703   ⟹   XP_063129773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,662 - 9,573,579 (+)NCBI
RefSeq Acc Id: XM_063273704   ⟹   XP_063129774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,662 - 9,573,579 (+)NCBI
RefSeq Acc Id: XM_063273705   ⟹   XP_063129775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,655 - 9,573,579 (+)NCBI
RefSeq Acc Id: XM_063273706   ⟹   XP_063129776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
RefSeq Acc Id: XM_063273707   ⟹   XP_063129777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,662 - 9,573,579 (+)NCBI
RefSeq Acc Id: XM_063273708   ⟹   XP_063129778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
RefSeq Acc Id: XM_063273709   ⟹   XP_063129779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
RefSeq Acc Id: XM_063273710   ⟹   XP_063129780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,655 - 9,573,579 (+)NCBI
RefSeq Acc Id: XM_063273711   ⟹   XP_063129781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,662 - 9,573,579 (+)NCBI
RefSeq Acc Id: XM_063273712   ⟹   XP_063129782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
RefSeq Acc Id: XM_063273713   ⟹   XP_063129783
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,662 - 9,573,579 (+)NCBI
RefSeq Acc Id: XM_063273714   ⟹   XP_063129784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,662 - 9,573,579 (+)NCBI
RefSeq Acc Id: XM_063273715   ⟹   XP_063129785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,518,856 - 9,573,579 (+)NCBI
Protein Sequences
Protein RefSeqs NP_148981 (Get FASTA)   NCBI Sequence Viewer  
  XP_006250739 (Get FASTA)   NCBI Sequence Viewer  
  XP_006250740 (Get FASTA)   NCBI Sequence Viewer  
  XP_006250741 (Get FASTA)   NCBI Sequence Viewer  
  XP_006250742 (Get FASTA)   NCBI Sequence Viewer  
  XP_006250743 (Get FASTA)   NCBI Sequence Viewer  
  XP_006250744 (Get FASTA)   NCBI Sequence Viewer  
  XP_006250745 (Get FASTA)   NCBI Sequence Viewer  
  XP_006250746 (Get FASTA)   NCBI Sequence Viewer  
  XP_006250747 (Get FASTA)   NCBI Sequence Viewer  
  XP_006250748 (Get FASTA)   NCBI Sequence Viewer  
  XP_006250749 (Get FASTA)   NCBI Sequence Viewer  
  XP_006250750 (Get FASTA)   NCBI Sequence Viewer  
  XP_006250751 (Get FASTA)   NCBI Sequence Viewer  
  XP_006250752 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948451 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129766 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129767 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129768 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129769 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129770 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129771 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129772 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129773 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129774 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129775 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129776 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129777 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129778 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129779 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129780 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129781 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129782 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129783 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129784 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129785 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD01990 (Get FASTA)   NCBI Sequence Viewer  
  AAH85722 (Get FASTA)   NCBI Sequence Viewer  
  EDL99572 (Get FASTA)   NCBI Sequence Viewer  
  EDL99573 (Get FASTA)   NCBI Sequence Viewer  
  EDL99574 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000003072.3
  ENSRNOP00000038196.5
  ENSRNOP00000071621.2
  ENSRNOP00000079808.1
  ENSRNOP00000085826.1
GenBank Protein Q9Z2Q1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_148981   ⟸   NM_033021
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot),   G3V699 (UniProtKB/TrEMBL),   A6K602 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250740   ⟸   XM_006250678
- Peptide Label: isoform X2
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006250742   ⟸   XM_006250680
- Peptide Label: isoform X4
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006250749   ⟸   XM_006250687
- Peptide Label: isoform X22
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006250743   ⟸   XM_006250681
- Peptide Label: isoform X5
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot),   A0A0G2K0X9 (UniProtKB/TrEMBL),   A6K603 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250745   ⟸   XM_006250683
- Peptide Label: isoform X8
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006250746   ⟸   XM_006250684
- Peptide Label: isoform X13
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006250750   ⟸   XM_006250688
- Peptide Label: isoform X23
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot),   A0A8L2QIX3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250741   ⟸   XM_006250679
- Peptide Label: isoform X3
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006250744   ⟸   XM_006250682
- Peptide Label: isoform X7
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006250747   ⟸   XM_006250685
- Peptide Label: isoform X19
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006250748   ⟸   XM_006250686
- Peptide Label: isoform X21
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006250751   ⟸   XM_006250689
- Peptide Label: isoform X26
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006250752   ⟸   XM_006250690
- Peptide Label: isoform X26
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006250739   ⟸   XM_006250677
- Peptide Label: isoform X1
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000038196   ⟸   ENSRNOT00000033489
Ensembl Acc Id: ENSRNOP00000071621   ⟸   ENSRNOT00000091367
Ensembl Acc Id: ENSRNOP00000003072   ⟸   ENSRNOT00000003072
RefSeq Acc Id: XP_038948451   ⟸   XM_039092523
- Peptide Label: isoform X25
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSRNOP00000079808   ⟸   ENSRNOT00000097169
Ensembl Acc Id: ENSRNOP00000085826   ⟸   ENSRNOT00000116260
RefSeq Acc Id: XP_063129775   ⟸   XM_063273705
- Peptide Label: isoform X14
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063129780   ⟸   XM_063273710
- Peptide Label: isoform X18
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063129766   ⟸   XM_063273696
- Peptide Label: isoform X5
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot),   A0A0G2K0X9 (UniProtKB/TrEMBL),   A6K603 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129768   ⟸   XM_063273698
- Peptide Label: isoform X8
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063129774   ⟸   XM_063273704
- Peptide Label: isoform X13
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063129784   ⟸   XM_063273714
- Peptide Label: isoform X23
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot),   A0A8L2QIX3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129773   ⟸   XM_063273703
- Peptide Label: isoform X12
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063129777   ⟸   XM_063273707
- Peptide Label: isoform X15
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot),   A0A8I5ZP55 (UniProtKB/TrEMBL),   A6K604 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129781   ⟸   XM_063273711
- Peptide Label: isoform X19
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063129783   ⟸   XM_063273713
- Peptide Label: isoform X21
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063129770   ⟸   XM_063273700
- Peptide Label: isoform X10
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063129769   ⟸   XM_063273699
- Peptide Label: isoform X9
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063129767   ⟸   XM_063273697
- Peptide Label: isoform X6
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063129772   ⟸   XM_063273702
- Peptide Label: isoform X12
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063129776   ⟸   XM_063273706
- Peptide Label: isoform X15
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot),   A0A8I5ZP55 (UniProtKB/TrEMBL),   A6K604 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129779   ⟸   XM_063273709
- Peptide Label: isoform X17
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063129782   ⟸   XM_063273712
- Peptide Label: isoform X20
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063129771   ⟸   XM_063273701
- Peptide Label: isoform X11
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063129785   ⟸   XM_063273715
- Peptide Label: isoform X24
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063129778   ⟸   XM_063273708
- Peptide Label: isoform X16
- UniProtKB: Q9Z2Q1 (UniProtKB/Swiss-Prot),   Q5RKK4 (UniProtKB/Swiss-Prot),   A0A8I6GED0 (UniProtKB/TrEMBL)
Protein Domains
Ancestral coatomer element 1 Sec16/Sec31

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z2Q1-F1-model_v2 AlphaFold Q9Z2Q1 1-1249 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699196
Promoter ID:EPDNEW_R9720
Type:initiation region
Name:Sec31a_1
Description:SEC31 homolog A, COPII coat complex component
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01410,854,747 - 10,854,807EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620233 AgrOrtholog
BioCyc Gene G2FUF-16398 BioCyc
Ensembl Genes ENSRNOG00000002251 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003072.6 UniProtKB/TrEMBL
  ENSRNOT00000033489.6 UniProtKB/TrEMBL
  ENSRNOT00000091367.2 UniProtKB/TrEMBL
  ENSRNOT00000097169.1 UniProtKB/TrEMBL
  ENSRNOT00000116260.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.1030 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Functional domain of the splicing factor Prp18 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7107486 IMAGE-MGC_LOAD
InterPro ACE1_Sec16_Sec31 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SEC31-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:93646 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93320 IMAGE-MGC_LOAD
NCBI Gene 93646 ENTREZGENE
PANTHER PROTEIN TRANSPORT PROTEIN SEC31A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13923 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sec16_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PhenoGen Sec31a PhenoGen
PROSITE WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000002251 RatGTEx
SMART WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K0X9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZP55 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GED0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QIX3 ENTREZGENE, UniProtKB/TrEMBL
  A6K602 ENTREZGENE, UniProtKB/TrEMBL
  A6K603 ENTREZGENE, UniProtKB/TrEMBL
  A6K604 ENTREZGENE, UniProtKB/TrEMBL
  G3V699 ENTREZGENE, UniProtKB/TrEMBL
  Q5RKK4 ENTREZGENE
  Q9Z2Q1 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q5RKK4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-13 Sec31a  SEC31 homolog A, COPII coat complex component  Sec31a  SEC31 homolog A, COPII coating complex component  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-30 Sec31a  SEC31 homolog A, COPII coating complex component  Sec31a  SEC31 homolog A (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-22 Sec31a  SEC31 homolog A (S. cerevisiae)  Sec31l1  SEC31-like 1 (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Sec31l1  SEC31-like 1 (S. cerevisiae)  VAP1  vesicle associated protein  Symbol and Name updated 1299863 APPROVED
2002-08-07 VAP1  vesicle associated protein      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in liver, intestinal enterocytes 634465