Pia20 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL: Pia20 (Pristane induced arthritis QTL 20) Rattus norvegicus

Symbol: Pia20
Name: Pristane induced arthritis QTL 20
RGD ID: 731183
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: joint inflammation composite score   (CMO:0000919)    
LOD Score: 3.55
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01410,729,268 - 61,873,323RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01410,676,655 - 61,976,011RGDRnor5.0
RGSC_v3.41410,340,377 - 41,608,939RGDRGSC3.4
RGSC_v3.11410,340,272 - 41,611,330RGD
Cross Type: backcross
Strains Crossed: DA.E3-(D14Wox8-D14Rat64)/Rhd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition
pristane  (IDA)

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
1. Wester L, etal., J Autoimmun 2003 Dec;21(4):305-13.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
69432Ugt2a1UDP glucuronosyltransferase family 2 member A1142219297022217094Rat
70069Cxcl2C-X-C motif chemokine ligand 2141873134618733391Rat
2065Afpalpha-fetoprotein141914175519159919Rat
70548Ppbppro-platelet basic protein141885243318853237Rat
3305Pf4platelet factor 4141884854918849258Rat
2085Albalbumin141917627519191793Rat
2149Aregamphiregulin141852192118531179Rat
61856Gabra2gamma-aminobutyric acid type A receptor subunit alpha 2143966241139801082Rat
3401Prkg2protein kinase cGMP-dependent 2141221712112313616Rat
3284Pdgfraplatelet derived growth factor receptor alpha143552792635581130Rat
61981Csn2casein beta142197227421979511Rat
2101Ambnameloblastin142123988721252534Rat
2119Anxa3annexin A3141437192114426503Rat
2212Bmp3bone morphogenetic protein 3141236291212387572Rat
3937Ugt2b37UDP-glucuronosyltransferase 2 family, member 37142249508422534865Rat
620066Paicsphosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase143356388433580944Rat
70513Gnrhrgonadotropin releasing hormone receptor142348046223498450Rat
619926Nup54nucleoporin 54141712343417141832Rat
2965Kdrkinase insert domain receptor143472767734787127Rat
3953Smr3bsubmaxillary gland androgen regulated protein 3B142149021621709077Rat
68388Nmuneuromedin U143435368334381968Rat
62049Rpl9ribosomal protein L9144452441944527613Rat
3733Sod3superoxide dismutase 3146095858360971143Rat
61990Csn3casein kappa142180373821810291Rat
628798Cxcl9C-X-C motif chemokine ligand 9141722883217233743Rat
620233Sec31aSEC31 homolog A, COPII coat complex component141085471310909579Rat
2649Gabrb1gamma-aminobutyric acid type A receptor subunit beta1143863119239112598Rat
628614Afmafamin141907867819132212Rat
620667Dckdeoxycytidine kinase142093544220952939Rat
619869Cxcl1C-X-C motif chemokine ligand 1141874367818745457Rat
628833Art3ADP-ribosyltransferase 3141714303717225389Rat
620831Epha5EPH receptor A5142558931225958258Rat
620209Cxcl10C-X-C motif chemokine ligand 10141721073317212930Rat
620299Eregepiregulin141857762018591395Rat
2667GcGC, vitamin D binding protein142026702320302577Rat
708342Parm1prostate androgen-regulated mucin-like protein 1141797291418076870Rat
708417Ugt2b7UDP glucuronosyltransferase family 2 member B7142259710322619968Rat
620168Npffr2neuropeptide FF receptor 2142014848520193577Rat
620973Tectec protein tyrosine kinase143791888438027953Rat
620568KitKIT proto-oncogene receptor tyrosine kinase143507213135149638Rat
621604Uso1USO1 vesicle transport factor141737145117436948Rat
621706Ythdc1YTH domain containing 1142297183423002326Rat
621670Gabra4gamma-aminobutyric acid type A receptor subunit alpha 4143915407239230994Rat
620889Slc34a2solute carrier family 34 member 2146025721160276516Rat
621732Gabrg1gamma-aminobutyric acid type A receptor subunit gamma 1143996450240051306Rat
708534Sult1b1sulfotransferase family 1B member 1142214241222155246Rat
620983Oprpnopiorphin prepropeptide142133846421353533Rat
621152Csn1s2acasein alpha s2-like A142193085821944921Rat
620491Sult1d1sulfotransferase family 1D, member 1142210741822126011Rat
621069RestRE1-silencing transcription factor143313198533152019Rat
620271Clockclock circadian regulator143441822634502218Rat
620275Btcbetacellulin141823185418270621Rat
68936Slc4a4solute carrier family 4 member 4142047625820817042Rat
621534Chrna9cholinergic receptor nicotinic alpha 9 subunit144388345043890171Rat
621812Cxcl3C-X-C motif chemokine ligand 3141882016818839659Rat
2289Cckarcholecystokinin A receptor145961093959619786Rat
620237Ppatphosphoribosyl pyrophosphate amidotransferase143358054133614919Rat
3954Vcsa2variable coding sequence A2142155848921564115Rat
620365Hnrnpdheterogeneous nuclear ribonucleoprotein D141125616311274684Rat
1304939Exoc1exocyst complex component 1143413221034192296Rat
621841HopxHOP homeobox143335480333362547Rat
620619Rfc1replication factor C subunit 1144462752844702205Rat
1304562Tbc1d1TBC1 domain family member 1144559875345797650Rat
1302952Cops4COP9 signalosome subunit 4141071886310749134Rat
1302967Tmprss11ctransmembrane protease, serine 11C142340571723461384Rat
1304958Tbc1d19TBC1 domain family, member 19145940393059516854Rat
1303337Arl9ADP-ribosylation factor like GTPase 9143343680333447516Rat
621815Cnga1cyclic nucleotide gated channel subunit alpha 1143815577138171107Rat
3586Rn45s45S pre-ribosomal RNA144664322246655563Rat
1304608Tecrltrans-2,3-enoyl-CoA reductase-like142666285126735878Rat
727827Cxcl11C-X-C motif chemokine ligand 11141719539517198170Rat
628623Ugt2b15UDP glucuronosyltransferase family 2 member B15142237542822486291Rat
3928Uchl1ubiquitin C-terminal hydrolase L1144313322443143942Rat
708540Cxcl6C-X-C motif chemokine ligand 6141886020118920839Rat
1303278Tmprss11btransmembrane serine protease 11B142410376824125260Rat
620895Ugt2b35UDP glucuronosyltransferase 2 family, polypeptide B35142255363322591461Rat
620836Adgrl3adhesion G protein-coupled receptor L3142836217629226085Rat
620129Fgf5fibroblast growth factor 5141297492112996046Rat
621882Scarb2scavenger receptor class B, member 2141706417317115620Rat
620592Cabs1calcium binding protein, spermatid associated 1142174629421748356Rat
1304641Stim2stromal interaction molecule 2145919818059323947Rat
1305002Ccng2cyclin G2141626757216276068Rat
708541Ugt2b17UDP glucuronosyltransferase family 2 member B17142272439922736148Rat
1305114Mob1bMOB kinase activator 1B142096005220992753Rat
727972Zar1zygote arrest 1143775757937764389Rat
735208Spata18spermatogenesis associated 18143708152937108245Rat
2430Csn1s1casein alpha s1142199345022009308Rat
1307468Rell1RELT-like 1144598224446041907Rat
1308540Utp3UTP3, small subunit processome component142115399821155652Rat
1303099Rasl11bRAS-like family 11 member B143655035336554574Rat
1306997Wdr19WD repeat domain 19144470501244767120Rat
1306446Tmprss11gtransmembrane protease, serine 11G142316663323207327Rat
1309975Tlr1toll-like receptor 1144506266245065014Rat
1306452Arap2ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2144872603348922809Rat
1308523Ccdc158coiled-coil domain containing 158141691713816976240Rat
1307405Septin11septin 11141636954416405645Rat
1306105Tmem150ctransmembrane protein 150C141109465511166323Rat
1307623Rhohras homolog family member H144396175643992587Rat
1306572Anapc4anaphase promoting complex subunit 4146047196260503803Rat
3776Sult1e1sulfotransferase family 1E member 1142207086122089264Rat
1306094Lrrc66leucine rich repeat containing 66143712871537153890Rat
1308324Uba6ubiquitin-like modifier activating enzyme 6142350762823571446Rat
1307270Liaslipoic acid synthetase144450721744524287Rat
1309278Chic2cysteine-rich hydrophobic domain 2143568365735718005Rat
1310879Mthfd2lmethylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like141864027418721298Rat
1311994Sowahbsosondowah ankyrin repeat domain family member B141649102316495764Rat
1308828Srd5a3steroid 5 alpha-reductase 3143455476934570423Rat
1308444Ugt2a3UDP glucuronosyltransferase family 2 member A3142225150722267899Rat
1308159Lnx1ligand of numb-protein X 1143604713636149740Rat
1310750Adamts3ADAM metallopeptidase with thrombospondin type 1, motif 3141986627820072896Rat
1311593Slain2SLAIN motif family, member 2143780234737880571Rat
1310422Dcun1d4defective in cullin neddylation 1 domain containing 4143721072137294517Rat
1310426Paqr3progestin and adipoQ receptor family member 3141410751314129780Rat
1560582Phox2bpaired-like homeobox 2b144271116942718707Rat
1310858Grsf1G-rich RNA sequence binding factor 1142103999021056413Rat
1333995Olr1604-psolfactory receptor pseudogene 1604143883815738839029Rat
1311361Lin54lin-54 DREAM MuvB core complex component141077007210828115Rat
1311135Aasdhaminoadipate-semialdehyde dehydrogenase143361999033647268Rat
1311628Prdm8PR/SET domain 8141305277613073583Rat
1310726Cep135centrosomal protein 135143405216834115763Rat
621879UgdhUDP-glucose 6-dehydrogenase144447961444502845Rat
1311569Tlr10toll-like receptor 10144507365245082242Rat
1311575Cracdcapping protein inhibiting regulator of actin dynamics143364998933783794Rat
1311584Stap1signal transducing adaptor family member 1142357540023604984Rat
1310470Shroom3shroom family member 3141662276716903265Rat
1309016Enoph1enolase-phosphatase 1141117235911198799Rat
1307267NaaaN-acylethanolamine acid amidase141728326217302364Rat
1306516Fras1Fraser extracellular matrix complex subunit 1141443839214853016Rat
1306201Igfbp7insulin-like growth factor binding protein 7143301030033070193Rat
1311414Zcchc4zinc finger CCHC-type containing 4146051149460553167Rat
1309477Polr2bRNA polymerase II subunit B143307010433107792Rat
1306481TxkTXK tyrosine kinase143802980938085822Rat
1311309FrylFRY like transcription coactivator143755110937757511Rat
1310092Nipal1NIPA-like domain containing 1143810402738128038Rat
1310094Thap6THAP domain containing 6141759586517616192Rat
1310958Cwh43cell wall biogenesis 43 C-terminal homolog143731547937361728Rat
1309209Ccnicyclin I141634151016364326Rat
1309571G3bp2G3BP stress granule assembly factor 2141743714517523254Rat
1309536Slc10a4solute carrier family 10, member 4143776483937770059Rat
1310155Jchainjoining chain of multimeric IgA and IgM142117684121183731Rat
1309619Atp8a1ATPase phospholipid transporting 8A1144197239842210555Rat
1309625Cdkl2cyclin dependent kinase like 2141753017017565950Rat
1306796Enamenamelin142119463521219529Rat
1311626Ube2kubiquitin-conjugating enzyme E2K144428924744348691Rat
1307093Ppef2protein phosphatase with EF-hand domain 2141730682517333588Rat
1307094Pds5aPDS5 cohesin associated factor A144418544544282308Rat
1308047Gsx2GS homeobox 2143565098535652709Rat
1309336Fip1l1factor interacting with PAPOLA and CPSF1143615038136208395Rat
1306061Pgm2phosphoglucomutase 2144582944045863883Rat
1305402Commd8COMM domain containing 8143861240838622586Rat
1309563Slc25a52solute carrier family 25, member 52144720152147203301Rat
1309989Ugt2b10UDP glucuronosyltransferase 2 family, polypeptide B10142280613222826890Rat
1305269Limch1LIM and calponin homology domains 1144276036343072976Rat
1308227Klbklotho beta144452952344614093Rat
1309661Klhl5kelch-like family member 5144480521344867075Rat
1308072Dhx15DEAH-box helicase 15146113674061174880Rat
1309950Hnrnpdlheterogeneous nuclear ribonucleoprotein D-like141119911411204670Rat
1306983Tmem165transmembrane protein 165143450303734528262Rat
1310137Nsun7NOP2/Sun RNA methyltransferase family member 7144352553043584621Rat
1310384Prr27proline rich 27142188245421898651Rat
1310391Lgi2leucine-rich repeat LGI family, member 2146076432560791809Rat
1306850Mrpl1mitochondrial ribosomal protein L1141495150715008136Rat
620654Tmprss11dtransmembrane serine protease 11D142333093323392993Rat
1562220Rasgef1bRasGEF domain family, member 1B141149969212028513Rat
1562860Sel1l3SEL1L family member 3146012296860229565Rat
1561381RGD1561381similar to microsomal glutathione S-transferase 3142116379121164435Rat
1565738N4bp2NEDD4 binding protein 2144396335344092844Rat
1359713Rbm47RNA binding motif protein 47144370194443839803Rat
1564635Grxcr1glutaredoxin and cysteine rich domain containing 1144166368841787331Rat
1561929LOC360919similar to alpha-fetoprotein141902881019072734Rat
1565933LOC360933similar to Ac1591144138093941433918Rat
1564808Usp46ubiquitin specific peptidase 46143668713436755360Rat
1564787Srp72signal recognition particle 72143344758333453788Rat
1561612LOC498368similar to RIKEN cDNA 0610040J01144605075246134770Rat
1561698Tmprss11etransmembrane serine protease 11E142306100523114471Rat
1561699RGD1561699similar to DNA segment, Chr 5, ERATO Doi 577, expressed141542402515426702Rat
1562438Apbb2amyloid beta precursor protein binding family B member 2144320504743526968Rat
1564256Cxcl13C-X-C motif chemokine ligand 13141525314615258221Rat
1563299Smr3asubmaxillary gland androgen regulated protein 3A142170333621709074Rat
1562708Scfd2sec1 family domain containing 2143621600236543661Rat
1561226RGD1561226similar to DNA segment, Chr 5, ERATO Doi 577, expressed141572296715725594Rat
1560084Epgnepithelial mitogen141862710318635135Rat
1560201Fam114a1family with sequence similarity 114, member A1144494170545012299Rat
1561294Antxr2ANTXR cell adhesion molecule 2141319171613331286Rat
1561589RGD1561589similar to RIKEN cDNA 5730434I03 gene143225776832258666Rat
1565664RGD1565664similar to UDP-glucuronosyltransferase 2B1 precursor, microsomal (UDPGTR-2)142276811822777917Rat
1565660RGD1565660similar to CDNA sequence BC061212141544836315451121Rat
1562073RGD1562073similar to ribosomal protein S17141134692411347331Rat
1563725RGD1563725similar to C1GALT1-specific chaperone 1145365954253660752Rat
1566292RGD1566292similar to Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9145315981253160338Rat
1565048RGD1565048similar to 60S ribosomal protein L9142558461125585237Rat
1564723Naa11N(alpha)-acetyltransferase 11, NatA catalytic subunit141382761513838642Rat
1561883Odamodontogenic, ameloblast associated142184299021852216Rat
1309128Cnot6lCCR4-NOT transcription complex, subunit 6-like141505910115148255Rat
1559459RGD1559459similar to Expressed sequence AI788959142293245422955663Rat
1303061Cenpccentromere protein C142361190923670314Rat
1302956Spink2serine peptidase inhibitor, Kazal type 2143324727833253913Rat
1359201Nfxl1nuclear transcription factor, X-box binding-like 1143819246238233852Rat
708371Tmem33transmembrane protein 33144253735242559580Rat
1359468Fdcspfollicular dendritic cell secreted protein142181899921823687Rat
1563065Nwd2NACHT and WD repeat domain containing 2144613678046153320Rat
1562348Ankrd17ankyrin repeat domain 17141929102519431521Rat
628794Csn1s2bcasein alpha s2-like B142189995421916068Rat
1559654RGD1559654similar to DNA segment, Chr 5, ERATO Doi 577, expressed141583029415833049Rat
1303030Tlr6toll-like receptor 6144502435145041188Rat
1309071Dzip1-ps1DAZ interacting protein 1, pseudogene 1142187693121878989Rat
1564828Bmp2kBMP-2 inducible kinase141412608614226823Rat
1311122Smim14small integral membrane protein 14144441363644460044Rat
1562394RGD1562394similar to ribosomal protein L30142203157622031980Rat
1559999RGD1559999similar to DNA segment, Chr 5, ERATO Doi 577, expressed141570691315932011Rat
1562424Tmem156transmembrane protein 156144488890244918377Rat
727887Corincorin, serine peptidase143824737938474931Rat
1311800Stbd1starch binding domain 1141697635516979760Rat
1359549Ociad1OCIA domain containing 1143745802337475485Rat
1587622LOC688557similar to 60S ribosomal protein L7145247834152479098Rat
1582968Ccdc149coiled-coil domain containing 149146085792460953504Rat
1584735Bend4BEN domain containing 4144240166542437957Rat
1584735Bend4BEN domain containing 4144239935942401643Rat
1583841Amd1-ps2adenosylmethionine decarboxylase 1, pseudogene 2145148343451486474Rat
1587357LOC305181similar to Elongation factor 2 (EF-2)141167221511677113Rat
1587596LOC688583similar to High mobility group protein 4 (HMG-4) (High mobility group protein 2a) (HMG-2a)145145843651462755Rat
1563570RGD1563570similar to ribosomal protein S23144368589943694618Rat
1303209Pcdh7protocadherin 7145464905455081632Rat
1566082Rassf6Ras association domain family member 6141898385219023921Rat
1561787RGD1561787similar to Ab2-076146177514361776906Rat
1562571Thegltheg spermatid protein-like143338951133431862Rat
1565710Shisa3shisa family member 3144221665342221225Rat
1565192Smim20small integral membrane protein 20146005749360069870Rat
1566409RGD1566409similar to 60S ribosomal protein L29 (P23)144537569745376142Rat
1560675Tmprss11ftransmembrane serine protease 11F142398241524080477Rat
1359515Pi4k2bphosphatidylinositol 4-kinase type 2 beta146056796860594821Rat
1359112Sdad1SDA1 domain containing 1141724738117274228Rat
1559547Cox18cytochrome c oxidase assembly factor COX18141943472819446379Rat
1584389LOC684970similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP)144479011344791513Rat
1565119RGD1565119similar to Mitochondrial carrier triple repeat 1144606918246071135Rat
1562755RGD1562755similar to 60S ribosomal protein L23a145887780658883654Rat
1565242Rufy3RUN and FYVE domain containing 3142105857521144775Rat
1565243LOC498339LRRGT00190142045609920474728Rat
1359460Noa1nitric oxide associated 1143310786833124172Rat
1592952LOC680377similar to Acidic leucine-rich nuclear phosphoprotein 32 family member A (Leucine-rich acidic nuclear protein)143835946438364082Rat
1592953Gpx4-ps3glutathione peroxidase 4, pseudogene 3143790445337905104Rat
1589974Stathstatherin142195701321960871Rat
1590581LOC680579similar to ribosomal protein L14144422456744226209Rat
1589992Cox7a2l2cytochrome c oxidase subunit VIIa polypeptide 2-like 2145266193352662375Rat
1591346LOC685667similar to PRAME family member DJ1198H6.2141546018915462858Rat
1593096Rbpjrecombination signal binding protein for immunoglobulin kappa J region145965773859865427Rat
1587839LOC685935similar to splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)144861177148613129Rat
1588541Atp10dATPase phospholipid transporting 10D (putative)143847595638575937Rat
1589059LOC685827similar to PRAME family member DJ1198H6.2141576445615767625Rat
1559712Pdcl2phosducin-like 2143438433834404920Rat
1587531LOC689849similar to heat shock protein 1, alpha142280207922804253Rat
1585182LOC690029similar to Phosphoglycerate kinase 1142506706725068269Rat
1586201LOC289651Dnmt3a-ps3 pseudogene145699151256994088Rat
1586202LOC289647similar to Sumo1/sentrin/Smt3 specific protease 17145195951351961478Rat
1586204Hspd1-ps2heat shock protein 1, pseudogene 2144159293641595154Rat
1359180Rchy1ring finger and CHY zinc finger domain containing 1141761596817631715Rat
1588879LOC688409similar to microfibrillar-associated protein 1145405408154055214Rat
1585459Fam47efamily with sequence similarity 47, member E141699149617027563Rat
1587539LOC689841similar to Rho GTPase activating protein 11A142278632922795349Rat
1584043LOC690125similar to Ferritin light chain 1 (Ferritin L subunit 1)142806988028075658Rat
1587649LOC688530similar to esterase D/formylglutathione hydrolase145578294655783833Rat
1587481LOC689899similar to 60S ribosomal protein L23a142412959824130134Rat
1587388LOC289517similar to Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1)141878327318788167Rat
1593290Klf3Kruppel like factor 3144514276945173753Rat
1595834LOC364228similar to T-cell activation kelch repeat protein142229380122303486Rat
1589491SepsecsSep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase146065773060687950Rat
1598022LOC681250similar to ASF1 anti-silencing function 1 homolog A141129056511291784Rat
1593180Slc30a9solute carrier family 30 member 9144246481442519760Rat
1596919LOC678765similar to CG17293-PA144816680848170721Rat
1595096LOC685352similar to CG17293-PA144773101347733257Rat
1591303Exoc1lexocyst complex component 1 like143419215534219497Rat
1592356Amtnamelotin142128248821301966Rat
1588690LOC689798similar to UDP-glucuronosyltransferase142264749822654974Rat
1593179LOC498369similar to neighbor of Brca1 gene 1144628616846287954Rat
1590200LOC685768similar to preferentially expressed antigen in melanoma141591912715924081Rat
1591320LOC685693similar to PRAME family member 3141548808215489731Rat
1597019LOC501910similar to Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7)143170458131708019Rat
1597020LOC501901similar to PRAME family member 8141600546516008317Rat
1590186LOC685782similar to PRAME family member 9141589676515899917Rat
1597011pramef20lPRAME family member 20-like141568055415683393Rat
1595055LOC685393similar to lin-9 homolog144826906448271775Rat
1595890LOC301861similar to ARP2 actin-related protein 2 homolog (yeast)144950736749509301Rat
1303263Gk2glycerol kinase 2141375128413753136Rat
1598162LOC679908similar to CG1249-PA143516123535161612Rat
1598004LOC681268similar to RIKEN cDNA 2410004L22144394403143944396Rat
1597725Cfap299cilia and flagella associated protein 299141243735012921997Rat
1597127LOC364146similar to 60S ribosomal protein L7a143985592639856757Rat
1597128LOC364143similar to WW domain binding protein 11143685051736852507Rat
1597129LOC364127similar to peptidylprolyl isomerase D142174026621741405Rat
1597130LOC364125similar to 60S ribosomal protein L8141926250219263247Rat
1597718LOC685165similar to serine/threonine/tyrosine interacting protein144595098645951673Rat
1594202Sgcbsarcoglycan, beta143711319437128623Rat
1596322Tmprss11atransmembrane serine protease 11A142322673523284515Rat
2316380Vom1r-ps103vomeronasal 1 receptor pseudogene 103145386875853869457Rat
2319120Cox7b2cytochrome c oxidase subunit 7B2143925668539368886Rat
2320419LOC100364744hypothetical LOC100364744141562253615623858Rat
2318302LOC100362385sperm motility kinase-like142433431624518000Rat
2319541Ociad2OCIA domain containing 2143743299937449425Rat
2320358LOC100361307hypothetical LOC100361307146039474460439383Rat
2322187LOC100363869ribosomal protein L32-like144460657744606984Rat
2322951LOC100363494ubiquitin B-like143686577136866058Rat
2321603LOC100364155hypothetical LOC100364155142232599922346301Rat
2321706LOC100360651ribosomal protein S3-like141621954916220216Rat
2323176Dthd1death domain containing 1144861289348677023Rat
2323210LOC100363333PRAME family member 12141594917415951844Rat
2321083Ppial4dpeptidylprolyl isomerase A (cyclophilin A)-like 4D142270690622707648Rat
2321178LOC100364381hypothetical LOC100364381142404760524048475Rat
2320504LOC10036125960S ribosomal protein L13-like145997990559980631Rat
2324284LOC100362674phytoceramidase, alkaline-like142775903827767250Rat
2324321LOC100362637myelin-associated oligodendrocytic basic protein-like142544543625445909Rat
4888551Mir328bmicroRNA 328b144533114645331263Rat
2323837LOC100359456eukaryotic translation initiation factor 5-like143736847937370778Rat
2324510LOC100362544dihydrouridine synthase 4-like142513587725136638Rat
2324107LOC100362751ribosomal protein P2-like144437542844375880Rat
2325120LOC100359605hypothetical LOC100359605145707065157079084Rat
5687329Rn28s28S ribosomal RNA144664709546655563Rat
5687330Rn18s18S ribosomal RNA144664322246645093Rat
5687331Rn5-8s5.8S ribosomal RNA144664616546646320Rat
6486870LOC100912410ribosome biogenesis protein NSA2 homolog145079040850800023Rat
6487121LOC100912459MKL/myocardin-like protein 2-like143037363230385366Rat
6489816Odaphodontogenesis associated phosphoprotein141757529517583214Rat
6489076Dancrdifferentiation antagonizing non-protein coding RNA143666403636665016Rat
6492244LOC100911506uncharacterized LOC100911506144597899945982123Rat
6492538LOC100911553uncharacterized LOC100911553141083987710850538Rat
6495044LOC100911104lymphocyte antigen 6B-like142286851822872403Rat
6486918LOC100912428uncharacterized LOC100912428143036893230374219Rat
6486723LOC10091250240S ribosomal protein SA-like145143902051440011Rat
6485535LOC100912798putative PRAME family member 25-like141546414315481192Rat
6490913LOC100911765pre-mRNA-splicing factor CWC22 homolog144642956646430380Rat
6498588LOC100910415glutaredoxin domain-containing cysteine-rich protein 1-like144164153541651568Rat
6501805LOC100909780nucleolin-like143347426533475567Rat
6498799LOC100910340putative PRAME family member 25-like141608655916087956Rat
6501942LOC100909727ribosome biogenesis regulatory protein homolog141564660715647730Rat
6502012LOC100909747signal recognition particle 72 kDa protein-like143344758333453766Rat
6499239LOC100910292PRAME family member 20/21-like141601579216018566Rat
6502517LOC100909703PRAME family member 12-like141563055415635583Rat
6499293LOC100910308multifunctional protein ADE2-like143396825833977367Rat
6496349LOC100910864mitochondrial carrier triple repeat protein 1-like144480246244805014Rat
6503112LOC100909585chitinase-3-like protein 1-like145377740553783863Rat
6503293LOC100909497putative PRAME family member 24-like141529443115420044Rat
6496885LOC100910703heterogeneous nuclear ribonucleoprotein A3-like142266279722665103Rat
6500262LOC100910138serine protease inhibitor Kazal-type 2-like143390683633913448Rat
6497185LOC100910750putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like146165094361668505Rat
6500970LOC100909936putative PRAME family member 24-like141613723316138744Rat
6501650LOC10090981960S ribosomal protein L27a-like145744963757449980Rat
7498730LOC102551532uncharacterized LOC102551532143317220433176276Rat
7501116LOC102556465histone-binding protein RBBP4-like143567951735682608Rat
7489037Mir6321microRNA 6321142109733821097478Rat
7526663LOC102554948uncharacterized LOC102554948142118794721275520Rat
7540659LOC102554412uncharacterized LOC102554412143656070036592187Rat
7504244LOC102547308uncharacterized LOC102547308144200303842005984Rat
7501046LOC102552460uncharacterized LOC102552460141165251111657559Rat
7521974LOC102550091uncharacterized LOC102550091144476744744770351Rat
7496786LOC102546535uncharacterized LOC102546535141763958317657381Rat
7534892LOC102554740uncharacterized LOC102554740144663242446633442Rat
7513863LOC102546751uncharacterized LOC102546751142804557328046534Rat
7519425LOC102546869uncharacterized LOC102546869144316649543171922Rat
7520032LOC102556008uncharacterized LOC102556008143427328634338251Rat
7646389LOC102548839uncharacterized LOC102548839141875277918783025Rat
7662865LOC102551686uncharacterized LOC102551686143330773233314320Rat
7632687LOC102552854uncharacterized LOC102552854143361390033617629Rat
7621128LOC102547499uncharacterized LOC102547499144226792942278344Rat
7650474LOC102553031zinc finger and SCAN domain-containing protein 20-like143358451333598874Rat
7666596LOC10255137660S ribosomal protein L19-like142285407622854782Rat
7635956LOC102550139CWF19-like protein 1-like141719210417194684Rat
7574976LOC102554235uncharacterized LOC102554235143586183635875438Rat
7623930LOC102549397zinc finger protein 120-like142772760127731053Rat
7624519LOC102553643uncharacterized LOC102553643143496015834968038Rat
7624541LOC102554132uncharacterized LOC102554132141919927019211671Rat
7639012LOC102551742uncharacterized LOC102551742143331921233329749Rat
7639242LOC102549607putative PRAME family member 24-like141617989616182578Rat
7627395LOC102552822uncharacterized LOC102552822146070691060714096Rat
7641928LOC102548364uncharacterized LOC102548364145074292150745738Rat
7659508LOC102546417uncharacterized LOC102546417145303400253049541Rat
7645018LOC102549643uncharacterized LOC102549643145511122355112849Rat
7568792LOC102554979uncharacterized LOC102554979143698373836987853Rat
7569636LOC102552631uncharacterized LOC102552631146033744760342417Rat
7618949LOC102549742uncharacterized LOC102549742141884487218845853Rat
7573251LOC102554024platelet-derived growth factor receptor alpha-like143555601635557391Rat
7543920LOC102552214uncharacterized LOC102552214145964088359645555Rat
7556651LOC102556376uncharacterized LOC102556376143788065937889996Rat
7573734LOC102556353uncharacterized LOC102556353143441432034452769Rat
7574419LOC102547286uncharacterized LOC102547286143032334030332728Rat
7557650LOC102551078uncharacterized LOC102551078141095612010958582Rat
7576947LOC102554768uncharacterized LOC102554768141393846213952228Rat
7560581LOC102555251vomeronasal type-2 receptor 26-like144841849148419358Rat
7546956LOC102553856uncharacterized LOC102553856143518188635204762Rat
7560981LOC102554098uncharacterized LOC102554098143572113535722843Rat
7561511LOC102556650uncharacterized LOC102556650144484966544858224Rat
7564466LOC102554514uncharacterized LOC102554514143670056436707901Rat
7551502LOC102552211uncharacterized LOC102552211141181674411818335Rat
7553273LOC102549966kelch repeat and BTB domain-containing protein 8-like142239726422399534Rat
7553859LOC102554165uncharacterized LOC102554165143584830135855944Rat
7554931LOC10255672860S ribosomal protein L36-like146126621961266585Rat
7693155LOC102550950uncharacterized LOC102550950141075207510769973Rat
7693237LOC102551561lymphocyte antigen 6B-like142288739122888008Rat
7678464LOC102549744uncharacterized LOC102549744145511288755114790Rat
7684935LOC102551595uncharacterized LOC102551595143329331333302631Rat
7690127LOC102551339uncharacterized LOC102551339143285545832897232Rat
7731088LOC102552147uncharacterized LOC102552147145930052059303511Rat
7738064LOC102552280uncharacterized LOC102552280141179902211813457Rat
7714547LOC102550273synaptonemal complex central element protein 2-like143836426838366000Rat
7715714LOC102551173uncharacterized LOC102551173141100951711017641Rat
7696931LOC102554353uncharacterized LOC102554353143601218736014139Rat
7668188LOC102552762uncharacterized LOC102552762144539521545399591Rat
7702016LOC102554702uncharacterized LOC102554702141381557813827528Rat
7709406LOC102557303vesicle-associated membrane protein 724-like141128374111321988Rat
7681103LOC10254811440S ribosomal protein S3a-like141272050212721581Rat
9088827LOC103693736uncharacterized LOC103693736142377144823777451Rat
9173188LOC103690248uncharacterized LOC103690248143697162236996251Rat
9104949LOC103692659signal recognition particle 19 kDa protein pseudogene142039969620403283Rat
9104957LOC103692863uncharacterized LOC103692863144532687845328495Rat
9152474LOC103692788exocyst complex component 1-like143413221034144229Rat
9191322LOC103693752uncharacterized LOC103693752144662999646632868Rat
9193396LOC103692662uncharacterized LOC103692662142055432020559618Rat
9195730LOC103690383UDP-glucuronosyltransferase 2B4-like142273863022743161Rat
9198670LOC103692836uncharacterized LOC103692836144140641141418292Rat
9201561LOC10369278560S ribosomal protein L39143303095033031322Rat
9201570LOC103693729uncharacterized LOC103693729141485042214851859Rat
9203318LOC103692772UDP-glucuronosyltransferase 2B7 pseudogene142264350822646316Rat
9071312LOC103693755leucine-rich repeat-containing protein 66-like143716119037162827Rat
9124068LOC103693749uncharacterized LOC103693749144611435146116899Rat
9208189LOC103693728extracellular matrix protein FRAS1-like141448746414489607Rat
9216278LOC10369259340S ribosomal protein SA pseudogene141162495611626903Rat
9220563LOC103692786ran guanine nucleotide release factor pseudogene143301354833029379Rat
9266848LOC103692657uncharacterized LOC103692657141773899217743735Rat
9307241LOC103692589transcription factor BTF3 homolog 1-like141128688411290126Rat
9223107LOC103693751uncharacterized LOC103693751144656490946566152Rat
9312075LOC103692861uncharacterized LOC103692861144393542643946371Rat
9312114LOC103693756myosin IC heavy chain-like144652144946523261Rat
9231553LOC103693743uncharacterized LOC103693743143394901733949353Rat
9274697LOC103693727uncharacterized LOC103693727141243735412453223Rat
9233689LOC103693753uncharacterized LOC103693753144666629446673385Rat
9279922LOC10369304540S ribosomal protein SA pseudogene146081461160815277Rat
9376224LOC103693742homeodomain-only protein pseudogene143394284433943180Rat
9288425LOC103693027uncharacterized LOC103693027145490215454922905Rat
9388429LOC103692658uncharacterized LOC103692658141886224018864474Rat
9333881LOC103692775uncharacterized LOC103692775142337864323404386Rat
9250639LOC103692794NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 pseudogene143547271235473331Rat
9368689LOC103692841uncharacterized LOC103692841144281803742832985Rat
9382410LOC103692580uncharacterized LOC103692580141082636810831625Rat
9371121LOC103692672nuclease-sensitive element-binding protein 1 pseudogene141701061317014156Rat
9364872LOC103693733uncharacterized LOC103693733142151515621534241Rat
9423304LOC103692806uncharacterized LOC103692806143642327736426078Rat
9462724LOC103693759uncharacterized LOC103693759145820445458262254Rat
9425438LOC103692594uncharacterized LOC103692594141390531613910579Rat
9465688LOC103692656uncharacterized LOC103692656141648853716491014Rat
9466193LOC103693757collagen alpha-1(I) chain-like144652365846528336Rat
9329768LOC103693735uncharacterized LOC103693735142272026322738093Rat
9471149LOC103693760uncharacterized LOC103693760145929301759297466Rat
9434882LOC103692839uncharacterized LOC103692839144266032542666180Rat
9434891LOC103693732uncharacterized LOC103693732141918907019189886Rat
9473682LOC103693731uncharacterized LOC103693731141663967316640359Rat
9398395LOC103693739uncharacterized LOC103693739141519736415240051Rat
9399075LOC103692776uncharacterized LOC103692776142343353423480728Rat
9399890LOC103693734uncharacterized LOC103693734142234644422365795Rat
9437172LOC103693738uncharacterized LOC103693738142676938926776335Rat
9438180LOC103692822uncharacterized LOC103692822143711001537112949Rat
9477837LOC103692809uncharacterized LOC103692809143637756736383032Rat
9444074LOC103692660gem-associated protein 8 pseudogene142058734220591163Rat
9450390LOC103692879uncharacterized LOC103692879144720567347212265Rat
9450963LOC103692866uncharacterized LOC103692866144558749045588718Rat
9454671LOC103693750uncharacterized LOC103693750144656610546580478Rat
9417080LOC103692860uncharacterized LOC103692860144362769043635135Rat
9458089LOC103690257ribosome biogenesis regulatory protein homolog141579145015801120Rat
9217819LOC10369375460S ribosomal protein L32 pseudogene144460755244609277Rat
9685090Mir193bmicroRNA 193b143033104930331131Rat
11368116LOC108352715glyceraldehyde-3-phosphate dehydrogenase pseudogene141289610612897798Rat
11368666LOC108352725uncharacterized LOC108352725142089278120899767Rat
11368675LOC108352757uncharacterized LOC108352757146113377761136625Rat
11371099LOC108352713uncharacterized LOC108352713141170332611709419Rat
11373177LOC10835282840S ribosomal protein S13 pseudogene144461540444615974Rat
11355448LOC108352740uncharacterized LOC108352740143448134034485413Rat
11433873LOC108352750toll-like receptor 6144502520145026102Rat
11434380LOC108352824SMR1 protein-like142160791921612401Rat
11464221LOC10835282760S ribosomal protein L7a-like143426291934264964Rat
11469569LOC108352724uncharacterized LOC108352724142088967120921710Rat
11472470LOC108352846uncharacterized LOC108352846141427055514271358Rat
11473620LOC108352753uncharacterized LOC108352753144719906547209927Rat
11474964LOC108352752uncharacterized LOC108352752144658050946581100Rat
11357190LOC108352731uncharacterized LOC108352731142553317425552366Rat
11357449LOC108348100PRAME family member 20-like141543399015435382Rat
11358099LOC108352733uncharacterized LOC108352733142823447328243759Rat
11443889LOC108348204high mobility group protein B3 pseudogene145117132251172375Rat
11456987LOC108352849small nuclear ribonucleoprotein G pseudogene142975474029755232Rat
11457267LOC108352741uncharacterized LOC108352741143587903435889777Rat
11444872LOC108352826coronin-1B pseudogene143385482233855419Rat
11362928LOC108352851uncharacterized LOC108352851143688608136890512Rat
11446409LOC108352727uncharacterized LOC108352727142184717421858737Rat
11459947LOC108352756uncharacterized LOC108352756146034888660359612Rat
11368474LOC108352726uncharacterized LOC108352726142159232221605787Rat
11438225LOC108352732uncharacterized LOC108352732142824378828246479Rat
11438234Trnac-gca38transfer RNA cysteine (anticodon GCA) 38143303159633031667Rat
11446996LOC108348046signal recognition particle subunit SRP72-like143353612333561140Rat
11447236LOC10835283260S ribosomal protein L7a pseudogene145438930754390131Rat
11361880LOC108352720uncharacterized LOC108352720141678018616785750Rat
11361894LOC108352853glyceraldehyde-3-phosphate dehydrogenase pseudogene144684884446849909Rat
11439749LOC108352749uncharacterized LOC108352749144497829644994095Rat
11440419LOC108352745uncharacterized LOC108352745144236630442401574Rat
11372249LOC108352738uncharacterized LOC108352738143371372733720816Rat
11432042LOC108352735uncharacterized LOC108352735143325969133281301Rat
11441155LOC108352746uncharacterized LOC108352746144359196643607023Rat
11432687LOC108352729uncharacterized LOC108352729142300241523025061Rat
11405419LOC108352841uncharacterized LOC108352841142850129428514261Rat
11405651LOC108352730zinc finger protein 605-like142365594523659246Rat
11405956LOC108348180signal recognition particle subunit SRP72-like143395849533960973Rat
11412959LOC108352755uncharacterized LOC108352755146009136760124543Rat
11416112LOC108352711uncharacterized LOC108352711141096908310979182Rat
11416121LOC108352716uncharacterized LOC108352716141344171613448882Rat
11419576LOC108352845uncharacterized LOC108352845141294175812953236Rat
11423634LOC10835282340S ribosomal protein S19 pseudogene141397908413980071Rat
11424981LOC108352737uncharacterized LOC108352737143364748133650937Rat
11355194LOC108352847actin, alpha skeletal muscle-like142377102623771741Rat
11384332LOC108352721ragulator complex protein LAMTOR2 pseudogene141747137017473244Rat
11384594LOC108352712uncharacterized LOC108352712141109028811096772Rat
11385906LOC108352722protein transport protein Sec61 subunit gamma-like141754281617543352Rat
11375289LOC108352723uncharacterized LOC108352723141885481618856469Rat
11375302LOC108352734uncharacterized LOC108352734143266382332675292Rat
11409134LOC108352844uncharacterized LOC108352844141105111011052050Rat
11398312LOC108352739uncharacterized LOC108352739143361002133611560Rat
11387368LOC108352742uncharacterized LOC108352742143696945636973302Rat
11377510LOC10835283160S ribosomal protein L7a-like145372724253727999Rat
11377841LOC10835271960S ribosomal protein L12 pseudogene141673972016740432Rat
11378147LOC108352744glyceraldehyde-3-phosphate dehydrogenase pseudogene144228267542283714Rat
11389570LOC108352754uncharacterized LOC108352754145977774359780035Rat
11401058LOC108352850uncharacterized LOC108352850143258575732595630Rat
11380862LOC108352728uncharacterized LOC108352728142204751022056580Rat
11382179LOC108352717uncharacterized LOC108352717141394290013959439Rat
11503027LOC108352825protein transport protein Sec61 subunit gamma pseudogene142765255227685704Rat
11478268LOC108352854dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4-like145311196053112240Rat
11478825LOC108352714uncharacterized LOC108352714141206926012084086Rat
11478834LOC108352748uncharacterized LOC108352748144456000644562103Rat
11481719LOC108352747uncharacterized LOC108352747144399838344005019Rat
11508820LOC10835274340S ribosomal protein S2 pseudogene143849864838499529Rat
11497443LOC108352848actin, alpha skeletal muscle-like142380475523805462Rat
11510655Trnat-cgu2transfer RNA threonine (anticodon CGU) 2143034170630341777Rat
11512407LOC108352852glyceraldehyde-3-phosphate dehydrogenase pseudogene144245770142458803Rat
11494825LOC108352718uncharacterized LOC108352718141398205513988030Rat
11518818LOC108352736uncharacterized LOC108352736143344400633444492Rat
11491550LOC108352751S-antigen protein-like144656490946580804Rat
11492415LOC108352829serine/arginine repetitive matrix protein 1-like144668091446686390Rat
11493526LOC108352830endogenous retrovirus group K member 8 Pol protein-like144721089147217154Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10113D14Mit2194141916170519161893Ratregion
10135D14Wox11135141919154219191664Ratregion
10413D14Wox14126142200984922009966Ratregion
10622D14Mgh3120142026622320266347Ratregion
10623D14Wox12194142027892120279109Ratregion
11030D14Mit4139144395750343957628Ratregion
11077D14Wox18147141885023518850381Ratregion
11078D14Mgh10235141885017918850405Ratregion
33818D14Mit9249144352179143522032Ratregion
33953D14Mit1186141268042412680613Ratregion
33989D14Mit13147144985470349854849Ratregion
34045D14Mit8137145494290154943045Ratregion
34102D14Mgh5150144351936443519537Ratregion
34214D14Mgh6145144330585943305995Ratregion
34479D14Mgh7112141190334411903455Ratregion
11482D14Wox13194142156522721565427Ratregion
11482D14Wox13194142155507621555306Ratregion
11483D14Wox17142156520821565418Ratregion
33551D14Mit6191141990974019909932Ratregion
33692D14Mit12140144031561040315747Ratregion
33772D14Mit3100143586752535867619Ratregion
36287D14Rat12153146178304761783215Ratregion
37350D14Rat42242141444499414445241Ratregion
35202D14Rat24125144408862244088723Ratregion
35319D14Rat16190144391076143910929Ratregion
35342D14Rat8132143259392632594049Ratregion
35465D14Rat13125143510791335108019Ratregion
36998D14Rat17161145714059257140755Ratregion
37030D14Rat3159141072909810729268Ratregion
37044D14Rat86294145248311852483415Ratregion
37124D14Rat14200143343274533432941Ratregion
37136D14Rat105237143547662635476841Ratregion
37624D14Rat68246144268926642689507Ratregion
37638D14Rat46204144873835348738560Ratregion
37638D14Rat46204144771605647716251Ratregion
37798D14Rat48241144544888545449135Ratregion
37822D14Rat33220142938484529385065Ratregion
36520D14Rat7168142466885424669027Ratregion
34890D14Rat9130143015505730155192Ratregion
34965D14Rat10176143316331633163485Ratregion
35713D14Rat11172146187332361873489Ratregion
35723D14Rat25168144244257942442731Ratregion
35723D14Rat25168144244253242442731Ratregion
35805D14Rat5160141192602811926177Ratregion
35939D14Rat15144144292414242924285Ratregion
35965D14Rat6174141633698816337161Ratregion
39598D14Rat81202142298589022986118Ratregion
39646D14Rat75249141241465512414917Ratregion
39826D14Rat85229144730403547304255Ratregion
39826D14Rat85229144699590646996126Ratregion
39876D14Rat98227141467320614673433Ratregion
38232D14Rat56181144327260343272789Ratregion
38238D14Rat58160146164323161643396Ratregion
38238D14Rat58160146032588960326054Ratregion
40392D14Rat107145145974329159743429Ratregion
40712D14Rat83228143335142033351654Ratregion
38408D14Rat65129143658503436585142Ratregion
38486D14Rat41140142861022328610358Ratregion
38616D14Rat44202144212255742122758Ratregion
40104D14Rat99237142646600226466248Ratregion
40146D14Rat76163141263840812638562Ratregion
38932D14Rat36145143303991233040042Ratregion
38984D14Rat31223144213195042132170Ratregion
39042D14Rat52135143738286937383013Ratregion
39064D14Rat35207144882762848827830Ratregion
39088D14Rat63104144345422543454319Ratregion
39138D14Rat50232142742047927420736Ratregion
39174D14Rat55219142768634227686562Ratregion
39426D14Rat77240141883381818834102Ratregion
39568D14Rat74212141191553411915739Ratregion
41990D14Arb16120142300390323004027Ratregion
41992D14Arb17190142027889020279110Ratregion
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5068032AU047388145144489946144899605Ratregion
5068064AU047369187145619376456193950Ratregion
5068144AU047322140143147373231473871Ratregion
5068204AU047286264143413749434137727Ratregion
5068426AU047152168144511690145117039Ratregion
5068512AU047101207141884210118842307Ratregion
5068594AU047051192143289794132898132Ratregion
5068612AU047039231143082853630828766Ratregion
5068690AU046992289145128830651288594Ratregion
5068754AU046952108142772576427725871Ratregion
5068768AU04694491145023204450232129Ratregion
5068852AU046886238142978954029789777Ratregion
5068886AU046864229143602032036020547Ratregion
5070103RH94474100141236295312363052Ratregion
5070205RH94533106141914177319141878Ratregion
5068976AU046806196145903676459036959Ratregion
5068996AU046793201143419676634196966Ratregion
5069658AU046356127146094286060942986Ratregion
5069716AU046317118141678129916781416Ratregion
5069748AU029143134142302691423027042Ratregion
5070496Gsh2282143565244035652721Ratregion
5060098BF388492135142298937922989513Ratregion
5060272AW531051184143368086833681051Ratregion
5060344AW531504177142588607825886254Ratregion
5062002AI454088144143450189134502034Ratregion
5062022BF397208109141753632817536436Ratregion
5062106BE106202157141202743512027589Ratregion
5063652BE107907170143754642937546598Ratregion
5065148BE121006160145471396354714122Ratregion
5065316BE121426203143965849039658692Ratregion
5060436BE110064167142595646925956635Ratregion
5060674BE098844183143414177934141965Ratregion
5062428BF403257156144447989144480046Ratregion
5063820AW535324176143449846334498638Ratregion
5065640BF406102197144515208345152279Ratregion
5064370BF399140209144314056843140776Ratregion
5065806AI045017171141882041918820589Ratregion
5060204AI072690192143728188737282078Ratregion
5061904BI294139193141383557613835768Ratregion
5062074BF397398134142860781828607951Ratregion
5063528BF404311215143343702533437239Ratregion
5063562BI289920104143647875036478853Ratregion
5063568BF404399222141436618414366405Ratregion
5063608BE107836151142859934828599498Ratregion
5065470BE109035165141098692410987088Ratregion
5062318BE106508190142115401821154207Ratregion
5063986BE120376189141221856112218749Ratregion
5062780AW534411150141634772616347875Ratregion
5064422BI302173206142160916921609375Ratregion
5062824BI295036136142112667121126806Ratregion
5062966BE113508154141627344016273592Ratregion
5064532BF399306173143416027134160443Ratregion
5061240BE111373150143655292536553074Ratregion
5064708BE108365173143313376433133936Ratregion
5061502BE105338153142838918528389337Ratregion
5063244BI301572198144300582843006025Ratregion
5063246BI301575193143256113232561324Ratregion
5066510AU048314174145684833756848523Ratregion
5066546AU048293120142477710224777221Ratregion
5061610AA875648157143336234733362503Ratregion
5086873BM387514163145925378159254049Ratregion
5086873BM387514163145925378159253943Ratregion
5086935AA801220210141796956517969774Ratregion
5087052BM389183198143390956633909763Ratregion
5087052BM389183198143325003133250228Ratregion
5087526PMC275467P2208141919176119191968Ratregion
5082323BE119187173144220732942207501Ratregion
5086425AW529895205142106264421062848Ratregion
5087552PMC312758P2177143358098433581160Ratregion
5082813BF390183163141867815618678318Ratregion
5088951AU048866176141902821019028385Ratregion
5089139AU048978240141457692614577165Ratregion
5089855AU049403203141501360515013807Ratregion
5089937AU049453267143693593136936197Ratregion
5089953AU049462150141294020812940357Ratregion
5089301AU049074121141672590216727383Ratregion
5089313AU049082185143390650733906691Ratregion
5089313AU049082185143324697233247156Ratregion
5089429AU049151253144867813848678390Ratregion
5089515AU049201251146107266661072914Ratregion
5083705AI009635205143675294336753147Ratregion
5089689AU049304225141695680616957030Ratregion
5090351AU049699245145422374154223985Ratregion
5090365AU049708279144361457543614852Ratregion
5084042AA894182203141412610314126305Ratregion
5090247AU049638144141075512610755269Ratregion
5084394AI233864231141881932418819554Ratregion
5087805D5Wsu145e276141120438411204659Ratregion
5082441BI274763218141649478816495005Ratregion
5090713AU049919211143255337632553586Ratregion
5088395AU048544264143474387234744135Ratregion
5080778RH141776191144429441644294606Ratregion
5088665AU048704222144446419944464420Ratregion
5088797AU048779236144213195542132190Ratregion
5090037AU049513209141191551611915724Ratregion
5090193AU049606154144437098844371141Ratregion
5088989AU048888125143806182338061947Ratregion
5082669BE119975196143412788234128077Ratregion
5085850AI231703161142095125720951417Ratregion
5086078AA891207188141711768617117873Ratregion
5080818RH141800185146056813560568319Ratregion
5080948RH141876180144396180043961979Ratregion
5080960RH141883188141412611814126305Ratregion
5084462AI013730180144276303142763210Ratregion
5084530AI176955135142047971320479847Ratregion
5081074RH141950199144211533542115533Ratregion
5085228AI598408157141932736919327525Ratregion
5085274AI176044198142093408720934281Ratregion
5085569BM390590214141710365317103866Ratregion
5083621BI276488217143449832034498536Ratregion
5503198mGk2484141375216113752644Ratregion
5507587Alb1128141919096719191798Ratregion
5503611UniSTS:465369103141917980319179905Ratregion
5503650UniSTS:465469545145966203459662578Ratregion
5503839PRDM8_8072919141305407713054995Ratregion
5504072px-63c9212144150930741509518Ratregion
5507632D5Buc331172143916821139169382Ratregion
5507634UniSTS:1426321417143630715736308573Ratregion
5504799UniSTS:275850174141914291019144273Ratregion
5504853ha25651283144552035045521632Ratregion
5504885ha3026130142524139325241522Ratregion
5504885ha3026130142499289624993025Ratregion
5505030Gpx40143790448537904986Ratregion
5505048Dnmt3a127145699271256992838Ratregion
5505022Pf484141884860518848825Ratregion
5505118Cckar990145961959859620587Ratregion
5505548G39486212141157110311571314Ratregion
5505835UniSTS:495883239142558982325590061Ratregion
5505494D16S2625428141082068110821108Ratregion
5506047UniSTS:498239426143507272635073151Ratregion
5506889G47279138144664494946645086Ratregion
5506869G46840210142069759320697802Ratregion
5507037fa55h08.s10141878929018789636Ratregion
5507037fa55h08.s10141878929018789535Ratregion
5506931G54151167143449953834499704Ratregion
5507253AI0609080141713758917139262Ratregion
5499889UniSTS:235209266142115409021154355Ratregion
5499507stSG6026120144348283343484040Ratregion
5499507stSG6026120144348278143484040Ratregion
5499527stSG609548100144597858045979419Ratregion
5499883UniSTS:235187232144441799644418227Ratregion
5499885UniSTS:235197252143847601038476261Ratregion
5499887UniSTS:235223175141637191116372085Ratregion
5499693Stim1347145919821959198565Ratregion
5499881UniSTS:235180233145919850659198738Ratregion
5502361RH124614257141943043019430686Ratregion
5503412G34499109141941446619414574Ratregion
5503424AFMA286ZG11517144540627745407793Ratregion
5501169PMC151834P1403144388386043884262Ratregion
5501053PMC129753P2132145961242859612559Ratregion
5504734PMC86057P4438141919190019192337Ratregion
5501508D14S2921064143448694134488004Ratregion
5501708HNRPDL1465141120065411202118Ratregion
5501679UniSTS:265677293142270713022707422Ratregion
5501720UniSTS:266988152142594511425945265Ratregion
5501938MARC_17835-17836:1025010330:1490144271393442714423Ratregion
5502012MARC_23646-23647:1029444341:1158141126868511269742Ratregion
5502014MARC_23650-23651:1029445581:1953141127341211274364Ratregion
5502627RH125924233142040254520402776Ratregion
5502709DHX15175146117434061174514Ratregion
5502713PCDH7194145508214955082342Ratregion
5502847Arhgap11a0142278750722788240Ratregion
5502881Gabrb1693143864342838644120Ratregion
6484684D14Uwm13214143025014530250358Ratregion
6484686D14Uwm14262143413484634135107Ratregion
6480636D14Uwm1140143422810934228298Ratregion
6480638D14Uwm2220143621053036210739Ratregion
6480641D14Uwm3298143608142036081717Ratregion
6480643D14Uwm4240143499732534997547Ratregion
6484235D14Uwm5190143604730836047474Ratregion
6484237D14Uwm6389143608281436083192Ratregion
6484239D14Uwm7240143446720834467458Ratregion
6484241D14Uwm8300143490010334900394Ratregion
6484241D14Uwm8300143489979434900394Ratregion
6484243D14Uwm9210143528089535281100Ratregion
6484245D14Uwm10220143545741835457629Ratregion
6484247D14Uwm11190143562412935624308Ratregion
Position Markers

Flank 1: (D14Rat11)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01461,873,323 - 61,873,489NCBI
Rnor_5.01461,976,011 - 61,976,177UniSTS
RGSC_v3.41441,608,939 - 41,609,106RGD
RGSC_v3.41441,608,940 - 41,609,106UniSTS
RGSC_v3.11441,611,330 - 41,611,497RGD
Celera1438,251,934 - 38,252,100UniSTS
RH 2.0 Map14498.2RGD
SHRSP x BN Map1427.1799RGD
Peak: (D14Mit6)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01419,909,740 - 19,909,932NCBI
Rnor_5.01419,816,468 - 19,816,660UniSTS
RGSC_v3.41419,800,225 - 19,800,418RGD
RGSC_v3.41419,800,226 - 19,800,418UniSTS
RGSC_v3.11419,800,225 - 19,800,418RGD
Celera1417,640,308 - 17,640,500UniSTS
Cytogenetic Map14p22UniSTS
Flank 2: (D14Rat3)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01410,729,098 - 10,729,268NCBI
Rnor_5.01410,676,485 - 10,676,655UniSTS
RGSC_v3.41410,340,102 - 10,340,272UniSTS
RGSC_v3.41410,339,971 - 10,340,377RGD
RGSC_v3.11410,340,102 - 10,340,272RGD
Celera149,197,754 - 9,197,924UniSTS
Cytogenetic Map14p22UniSTS
RH 3.4 Map14152.08RGD
RH 3.4 Map14152.08UniSTS
RH 2.0 Map14162.0RGD
SHRSP x BN Map144.62RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14127597761Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14127597761Rat
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14134403399Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14141333960Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14141333960Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14142766285Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14222782512680613Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14222782519230541Rat
724541Niddm53Non-insulin dependent diabetes mellitus QTL 530.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14483323310729268Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)14483323319909932Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14483323319909932Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14483323323004027Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14483323326466248Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14483323333040042Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14975643572854397Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin141053997755539977Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)141053997755539977Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)141072926861873323Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141268042430155192Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1412680424106641756Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141268061332593926Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141633698833163485Rat
631528Scl11Serum cholesterol level QTL 114.9blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)141915991938289187Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141916189343957503Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141919154143957628Rat
61413Eae10Experimental allergic encephalomyelitis QTL 103.5nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)141919166419909740Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)142018938665189386Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)142026622343957628Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)142145756566457565Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143259392686191589Rat
2324617Coatc2Coat color QTL 20.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)143303991261783215Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143316331673391571Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)144031561085315610Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)144031561085315610Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)144031561085315610Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)144031561085315610Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)144163756980841518Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1442442731108833671Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1443910761105074364Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1451818462105074364Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1460980905105980905Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1460980905105980905Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)146187332388870994Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Pia20

RGD Curation Notes
Note Type Note Reference
qtl_cross_type backcross  
qtl_disease E3 allele containing Pia fragment reduces development of chronic arthritis, measured by secretion of cartilage oligomeric matrix protein (COMP) 730280