Sec31a (SEC31 homolog A, COPII coat complex component) - Rat Genome Database

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Gene: Sec31a (SEC31 homolog A, COPII coat complex component) Chinchilla lanigera
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Symbol: Sec31a
Name: SEC31 homolog A, COPII coat complex component
RGD ID: 8728162
Description: ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); INVOLVED IN COPII-coated vesicle cargo loading (ortholog); response to calcium ion (ortholog); ASSOCIATED WITH chromosome 4q21 deletion syndrome (ortholog); diffuse large B-cell lymphoma (ortholog); NEURODEVELOPMENTAL DISORDER WITH SPASTIC QUADRIPLEGIA, OPTIC ATROPHY, SEIZURES, AND STRUCTURAL BRAIN ANOMALIES (ortholog); FOUND IN COPII vesicle coat (ortholog); COPII-coated ER to Golgi transport vesicle (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: SEC31 homolog A
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554336,830,540 - 6,891,258 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554336,830,732 - 6,891,259 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References


Genomics

Comparative Map Data
Sec31a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554336,830,540 - 6,891,258 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554336,830,732 - 6,891,259 (-)NCBIChiLan1.0ChiLan1.0
SEC31A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl482,818,509 - 82,901,166 (-)EnsemblGRCh38hg38GRCh38
GRCh38482,818,509 - 82,900,569 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37483,739,662 - 83,821,722 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36483,958,838 - 84,031,424 (-)NCBINCBI36hg18NCBI36
Build 34484,096,993 - 84,169,579NCBI
Celera481,030,957 - 81,102,991 (-)NCBI
Cytogenetic Map4q21.22NCBI
HuRef479,479,736 - 79,553,039 (-)NCBIHuRef
CHM1_1483,716,332 - 83,788,863 (-)NCBICHM1_1
Sec31a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395100,509,508 - 100,564,132 (-)NCBIGRCm39mm39
GRCm39 Ensembl5100,509,508 - 100,564,093 (-)Ensembl
GRCm385100,361,649 - 100,416,273 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5100,361,649 - 100,416,234 (-)EnsemblGRCm38mm10GRCm38
MGSCv375100,790,668 - 100,845,253 (-)NCBIGRCm37mm9NCBIm37
MGSCv365100,601,947 - 100,662,097 (-)NCBImm8
Celera597,687,421 - 97,742,015 (-)NCBICelera
Cytogenetic Map5E4NCBI
Sec31a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2149,214,324 - 9,269,281 (+)NCBI
Rnor_6.0 Ensembl1410,854,682 - 10,909,612 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01410,854,713 - 10,909,579 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01410,801,850 - 10,856,889 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41410,466,582 - 10,522,655 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11410,466,581 - 10,522,655 (+)NCBI
Celera149,321,723 - 9,376,348 (+)NCBICelera
Cytogenetic Map14p22NCBI
SEC31A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1447,164,207 - 47,236,223 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl447,173,348 - 47,235,812 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0441,312,389 - 41,384,924 (+)NCBIMhudiblu_PPA_v0panPan3
SEC31A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1326,761,018 - 6,840,802 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl326,761,289 - 6,840,709 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3235,044,306 - 35,123,841 (+)NCBI
ROS_Cfam_1.0326,782,111 - 6,862,117 (-)NCBI
UMICH_Zoey_3.1326,852,892 - 6,933,085 (-)NCBI
UNSW_CanFamBas_1.0326,722,105 - 6,801,751 (-)NCBI
UU_Cfam_GSD_1.03233,164,400 - 33,244,629 (+)NCBI
Sec31a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052855,503,050 - 5,580,731 (+)NCBI
SpeTri2.0NW_0049367381,664,916 - 1,741,739 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC31A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8135,420,884 - 135,495,121 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18135,431,965 - 135,495,124 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28144,727,204 - 144,774,058 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEC31A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1731,207,349 - 31,288,484 (-)NCBI
ChlSab1.1 Ensembl731,207,089 - 31,288,574 (-)Ensembl
Vero_WHO_p1.0NW_0236660379,776,537 - 9,857,889 (-)NCBI
Sec31a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247578,040,894 - 8,122,785 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005388248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005388249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005388250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005388251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005388252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005388253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005388256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01031549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01031550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01031551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01031552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBCQ01007447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000016650   ⟹   ENSCLAP00000016486
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554336,830,540 - 6,891,258 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000016651   ⟹   ENSCLAP00000016487
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554336,830,540 - 6,885,084 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000016652   ⟹   ENSCLAP00000016488
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554336,830,540 - 6,885,084 (-)Ensembl
RefSeq Acc Id: XM_005388248   ⟹   XP_005388305
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554336,830,732 - 6,891,259 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005388249   ⟹   XP_005388306
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554336,830,732 - 6,891,259 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005388250   ⟹   XP_005388307
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554336,830,732 - 6,891,051 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005388251   ⟹   XP_005388308
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554336,830,732 - 6,891,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005388252   ⟹   XP_005388309
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554336,830,732 - 6,891,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005388253   ⟹   XP_005388310
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554336,830,732 - 6,891,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005388256   ⟹   XP_005388313
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554336,830,732 - 6,891,257 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516167   ⟹   XP_013371621
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554336,830,732 - 6,891,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516168   ⟹   XP_013371622
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554336,830,732 - 6,891,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516169   ⟹   XP_013371623
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554336,830,732 - 6,891,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516170   ⟹   XP_013371624
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554336,830,732 - 6,891,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516171   ⟹   XP_013371625
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554336,830,732 - 6,891,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516172   ⟹   XP_013371626
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554336,830,732 - 6,891,258 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005388306   ⟸   XM_005388249
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005388308   ⟸   XM_005388251
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005388305   ⟸   XM_005388248
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005388313   ⟸   XM_005388256
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_005388310   ⟸   XM_005388253
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_005388309   ⟸   XM_005388252
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_005388307   ⟸   XM_005388250
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013371624   ⟸   XM_013516170
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_013371622   ⟸   XM_013516168
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013371625   ⟸   XM_013516171
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_013371626   ⟸   XM_013516172
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_013371623   ⟸   XM_013516169
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013371621   ⟸   XM_013516167
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000016487   ⟸   ENSCLAT00000016651
RefSeq Acc Id: ENSCLAP00000016486   ⟸   ENSCLAT00000016650
RefSeq Acc Id: ENSCLAP00000016488   ⟸   ENSCLAT00000016652


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011336 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000016487 ENTREZGENE
  ENSCLAP00000016488 ENTREZGENE
Ensembl Transcript ENSCLAT00000016651 ENTREZGENE
  ENSCLAT00000016652 ENTREZGENE
NCBI Gene Sec31a ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Sec31a  SEC31 homolog A, COPII coat complex component    SEC31 homolog A (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED