Iddm31 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Iddm31 (Insulin dependent diabetes mellitus QTL 31) Rattus norvegicus

Symbol: Iddm31
Name: Insulin dependent diabetes mellitus QTL 31
RGD ID: 2293089
Previously known as: Iddm
Trait: blood glucose amount   (VT:0000188)    
Measurement Type: age at onset/diagnosis of type 1 diabetes mellitus   (CMO:0001140)    
blood glucose level   (CMO:0000046)    
LOD Score: 4.7
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2143,813,074 - 18,274,691RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0144,833,233 - 19,909,932RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0144,830,815 - 19,816,660RGDRnor5.0
RGSC_v3.4144,895,894 - 19,800,418RGDRGSC3.4
Cross Type: intercross
Strains Crossed: ACI.BBDP-(RT1u)(Gimap5)/Sunn 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Polygenic nature of spontaneous diabetes in the rat. Permissive MHC haplotype and presence of the lymphopenic trait of the BB rat are not sufficient to produce susceptibility. Colle E, etal., Diabetes. 1992 Dec;41(12):1617-23.
2. Unpublished observations for Iddm QTL Personal communication with Dr. Wallis
3. TYPE 1 DIABETES IN THE BB RAT: A POLYGENIC DISEASE. Wallis RH, etal., Diabetes. 2009 Apr;58(4):1007-17. Epub 2009 Jan 23

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2525Dsppdentin sialophosphoprotein1455655625571669Rat
71036Mepematrix extracellular phosphoglycoprotein1454206345432186Rat
70069Cxcl2C-X-C motif chemokine ligand 2141718103017183075Rat
3663Mapk10mitogen activated protein kinase 101464976626790109Rat
2065Afpalpha-fetoprotein141757341217591476Rat
70548Ppbppro-platelet basic protein141730232617303130Rat
3305Pf4platelet factor 4141729843817299148Rat
2085Albalbumin141760739717622814Rat
2149Aregamphiregulin141697218516981443Rat
3401Prkg2protein kinase cGMP-dependent 2141055988210668479Rat
61969Hpseheparanase1488965938937011Rat
2855Ibspintegrin-binding sialoprotein1454398255452570Rat
69318Nkx6-1NK6 homeobox 11479697567976689Rat
2119Anxa3annexin A3141272770812781717Rat
2212Bmp3bone morphogenetic protein 3141071248910737153Rat
619926Nup54nucleoporin 54141561763015636029Rat
628798Cxcl9C-X-C motif chemokine ligand 9141572286815727779Rat
620233Sec31aSEC31 homolog A, COPII coat complex component1492143249269281Rat
628614Afmafamin141753102617563868Rat
619869Cxcl1C-X-C motif chemokine ligand 1141719336417195143Rat
628833Art3ADP-ribosyltransferase 3141563723015719442Rat
620209Cxcl10C-X-C motif chemokine ligand 10141570477215706969Rat
620299Eregepiregulin141702728717041062Rat
708342Parm1prostate androgen-regulated mucin-like protein 1141646830916577339Rat
621604Uso1USO1 vesicle transport factor141586663815932185Rat
621185Cds1CDP-diacylglycerol synthase 11478203287882943Rat
620275Btcbetacellulin141670844716746961Rat
2508Dmp1dentin matrix acidic phosphoprotein 11455284415542078Rat
621812Cxcl3C-X-C motif chemokine ligand 3141727014617289458Rat
727800Slc10a6solute carrier family 10 member 61460807166102037Rat
1304685Klhl8kelch-like family member 81458077955853325Rat
620365Hnrnpdheterogeneous nuclear ribonucleoprotein D1496153759638975Rat
1302952Cops4COP9 signalosome subunit 41490785799108788Rat
3752Spp1secreted phosphoprotein 11453088855315120Rat
727827Cxcl11C-X-C motif chemokine ligand 11141568943215692207Rat
1303294Abcg3l1ATP-binding cassette, subfamily G (WHITE), member 3-like 11451245415177265Rat
708540Cxcl6C-X-C motif chemokine ligand 6141731008917312303Rat
620129Fgf5fibroblast growth factor 5141132533411346570Rat
621882Scarb2scavenger receptor class B, member 2141555827115609813Rat
1305002Ccng2cyclin G2141480432114812819Rat
1306722Coq2coenzyme Q2, polyprenyltransferase1489414298961418Rat
1308523Ccdc158coiled-coil domain containing 158141541117815468579Rat
1307405Septin11septin 11141484475914990856Rat
1306585Lrrc8cleucine rich repeat containing 8 VRAC subunit C1442239014315590Rat
1306105Tmem150ctransmembrane protein 150C1494549999525300Rat
2531Sparcl1SPARC like 11456328165663866Rat
1310879Mthfd2lmethylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like141708994717170036Rat
1311994Sowahbsosondowah ankyrin repeat domain family member B141502915515033589Rat
1308102Plac8placenta associated 81490526019074264Rat
1310750Adamts3ADAM metallopeptidase with thrombospondin type 1, motif 3141823105118437773Rat
1310426Paqr3progestin and adipoQ receptor family member 3141246256812484999Rat
1311361Lin54lin-54 DREAM MuvB core complex component1491297759188244Rat
1311628Prdm8PR/SET domain 8141140320211424059Rat
1310470Shroom3shroom family member 3141509941515396832Rat
1309016Enoph1enolase-phosphatase 11495313369557797Rat
1307267NaaaN-acylethanolamine acid amidase141577730615796411Rat
1306516Fras1Fraser extracellular matrix complex subunit 1141279140713200862Rat
1310094Thap6THAP domain containing 6141609291916113528Rat
1307997Mrps18cmitochondrial ribosomal protein S18C1488123018818538Rat
1309209Ccnicyclin I141487969814902510Rat
1306669Arhgap24Rho GTPase activating protein 241468006317184001Rat
1309571G3bp2G3BP stress granule assembly factor 2141593235616020555Rat
1309625Cdkl2cyclin dependent kinase like 2141602738116063257Rat
1307093Ppef2protein phosphatase with EF-hand domain 2141579743515831614Rat
1307097Wdfy3WD repeat and FYVE domain containing 31475782457810491Rat
1309601Lrrc8dleucine rich repeat containing 8 VRAC subunit D1440299714134922Rat
1307940Aff1ALF transcription elongation factor 11458611886024196Rat
1305287Abraxas1abraxas 1, BRCA1 A complex subunit1487962818810625Rat
1309950Hnrnpdlheterogeneous nuclear ribonucleoprotein D-like1495580799563654Rat
1306850Mrpl1mitochondrial ribosomal protein L1141330052213359654Rat
1562220Rasgef1bRasGEF domain family, member 1B14985951210380044Rat
1561929Albfm1albumin superfamily member 1141747815917525047Rat
1561699RGD1561699similar to DNA segment, Chr 5, ERATO Doi 577, expressed141405856014061218Rat
1564256Cxcl13C-X-C motif chemokine ligand 13141360889413613965Rat
1561226RGD1561226similar to DNA segment, Chr 5, ERATO Doi 577, expressed141401319814015825Rat
1560084Epgnepithelial mitogen141707677417084806Rat
1560216Helqhelicase, POLQ-like1488185828862926Rat
1565703Gpat3glycerol-3-phosphate acyltransferase 31487153678768051Rat
1561294Antxr2ANTXR cell adhesion molecule 2141154226611682112Rat
1561977RGD1561977similar to DNA segment, Chr 5, ERATO Doi 577, expressed141416592814168560Rat
1359703Abcg3l2ATP-binding cassette, subfamily G (WHITE), member 3-like 21444932594538264Rat
1565660RGD1565660similar to CDNA sequence BC061212141379059613793232Rat
1562073Rps17-ps12ribosomal protein S17, pseudogene 121497083189708725Rat
1563360Ptpn13protein tyrosine phosphatase, non-receptor type 131461082026282619Rat
1564723Naa11N(alpha)-acetyltransferase 11, NatA catalytic subunit141218365112193687Rat
1309128Cnot6lCCR4-NOT transcription complex, subunit 6-like141341050113502511Rat
1562423Pramef20-ps2PRAME family member 20, pseudogene 2141377142613774085Rat
1559992Pkd2polycystin 2, transient receptor potential cation channel1452371355280455Rat
1560931Pcna-ps3proliferating cell nuclear antigen, pseudogene 31474652537482926Rat
1562348Ankrd17ankyrin repeat domain 17141772323917862625Rat
1559654RGD1559654similar to DNA segment, Chr 5, ERATO Doi 577, expressed141391514913922618Rat
1564828Bmp2kBMP-2 inducible kinase141248119412579411Rat
1564709Abcg3l3ATP-binding cassette, subfamily G (WHITE), member 3-like 31448441614892194Rat
1562932RGD1562932similar to DNA segment, Chr 5, ERATO Doi 577, expressed141445846714461102Rat
1303235Hsd17b11hydroxysteroid (17-beta) dehydrogenase 111456933045743157Rat
1561523Gbp6guanylate binding protein family member 61447302864756508Rat
1311800Stbd1starch binding domain 1141547045215473857Rat
1585864Set-ps15Set nuclear proto-oncogene, pseudogene 151485173018519537Rat
1587357Eef2-ps3eukaryotic translation elongation factor 2, pseudogene 3141002522710030201Rat
1566082Rassf6Ras association domain family member 6141743332817473565Rat
1359112Sdad1SDA1 domain containing 1141574148915768270Rat
1559547Cox18cytochrome c oxidase assembly factor COX18141786458117877483Rat
1564576Aff1-as1AFF1 antisense RNA 11460585816065848Rat
1563429Lrrc8bleucine rich repeat containing 8 VRAC subunit B1443504624416336Rat
1565568Abcg3ATP-binding cassette, subfamily G (WHITE), member 31447635524839061Rat
1359553Hsd17b13hydroxysteroid (17-beta) dehydrogenase 131457516975766809Rat
1591399Pramef8-ps1PRAME family member 8, pseudogene 1141404520614047856Rat
1587144LOC679539similar to ubiquitin-conjugating enzyme E2 variant 11447032434704962Rat
1587867Pramef8-ps2PRAME family member 8, pseudogene 2141412255514131850Rat
1592829Zfp326zinc finger protein 3261439412103980419Rat
1588538Abcg3l4ATP-binding cassette, subfamily G (WHITE), member 3-like 41445452064590223Rat
1589059Pramef12-ps2PRAME family member 12, pseudogene 2141398225713985192Rat
1560413Ndufb4l1NADH:ubiquinone oxidoreductase subunit B4-like 11463658726366282Rat
1359180Rchy1ring finger and CHY zinc finger domain containing 1141611326316129017Rat
1359522Nudt9nudix hydrolase 91456753765693332Rat
1585459Fam47efamily with sequence similarity 47, member E141548553715521599Rat
1583596Thoc2lTHO complex subunit 2-like1451970935234960Rat
1587388Eno1-ps24enolase 1, pseudogene 24141723383917238216Rat
1598022Asf1a-ps1anti-silencing function 1A histone chaperone, pseudogene 11496495209650910Rat
1591320Oog1-ps4oogenesin 1, pseudogene 4141448453514487334Rat
1590186LOC685782similar to PRAME family member 9141385005713852806Rat
1597011pramef20lPRAME family member 20-like141457668614579328Rat
1303263Gk2glycerol kinase 2141210707112108923Rat
1597725Cfap299cilia and flagella associated protein 299141078719111272894Rat
1597130Rpl8-ps4ribosomal protein L8, pseudogene 4141769362617694361Rat
1597133Rpl36-ps1ribosomal protein L36, pseudogene1482570288257342Rat
1597134Tbc1d1-ps1TBC1 domain family member 1, pseudogene 11475237507530777Rat
2301011Zfp951zinc finger protein 9511450324945048775Rat
2320419Pramef6l-ps1PRAME family member 6 like, pseudogene 1141381739513818717Rat
2322973LOC100363472nuclear receptor-binding factor 2-like1489843658986171Rat
2321706Rps3-ps2ribosomal protein S3, pseudogene 2141475597114756630Rat
2323137LOC100359907secretory calcium-binding phosphoprotein proline-glutamine rich 1-like1456640055675252Rat
2323210LOC100363333PRAME family member 12141451052614513196Rat
2324613LOC100366030rCG37858-like1448894864938248Rat
2325094Gbp6-ps1guanylate binding protein 6, pseudogene 11446617844678989Rat
6489816Odaphodontogenesis associated phosphoprotein141607183516084210Rat
6492538LOC100911553uncharacterized LOC1009115531492006749210222Rat
6501942Rrs1-ps6ribosome biogenesis regulator 1 homolog, pseudogene 6141394717013948293Rat
6499239LOC100910292PRAME family member 20/21-like141458906914591723Rat
6502517Oog1-ps2oogenesin 1, pseudogene 2141382541713830446Rat
6499958LOC100910198uncharacterized LOC1009101981454193475435372Rat
6503293LOC100909497putative PRAME family member 24-like141376429913767174Rat
6500970LOC100909936putative PRAME family member 24-like141442043414423091Rat
7528373Rpl38-ps5ribosomal protein L38, pseudogene 51449862884986755Rat
7496786LOC102546535uncharacterized LOC102546535141613716416153244Rat
7646169Gbp6-ps3guanylate binding protein 6, pseudogene 31444740874708888Rat
7632243LOC102549277uncharacterized LOC1025492771472581687268578Rat
7621998LOC102555488zinc finger protein 120-like1451052685108118Rat
7639242LOC102549607putative PRAME family member 24-like141471592214718579Rat
7616489LOC102548714zinc finger protein 709-like1450573195072903Rat
7589278LOC102550272uncharacterized LOC1025502721484437708469404Rat
7618949LOC102549742uncharacterized LOC102549742141729471617295743Rat
7557650LOC102551078uncharacterized LOC1025510781493163059318560Rat
7576947LOC102554768uncharacterized LOC102554768141229429512307954Rat
7693155LOC102550950uncharacterized LOC1025509501491117879129680Rat
7686608LOC102548800zinc finger protein 14-like1450036585026217Rat
7702016LOC102554702uncharacterized LOC102554702141213389912183562Rat
7702897LOC102546534uncharacterized LOC1025465341460747946077095Rat
7709406LOC102557303vesicle-associated membrane protein 724-like1496441099681254Rat
7681103Rps3a-ps3ribosomal protein S3a, pseudogene 3141106594811071780Rat
9201570LOC103693729uncharacterized LOC103693729141319853813202957Rat
9216872LOC103693725ubiquitin-conjugating enzyme E2 variant 2 pseudogene1490448499054618Rat
9371121Ybx1-ps3Y box binding protein 1, pseudogene 3141550470515509832Rat
11368116LOC108352715glyceraldehyde-3-phosphate dehydrogenase pseudogene141124784411248900Rat
11371099LOC108352713uncharacterized LOC108352713141006120910062206Rat
11372248LOC10835270040S ribosomal protein S25 pseudogene1465073606510458Rat
11466948LOC108352696uncharacterized LOC1083526961443239154325615Rat
11467926LOC108352710uncharacterized LOC1083527101488804948888096Rat
11472470LOC108352846uncharacterized LOC108352846141262703812627824Rat
11357449Pramef20-ps1PRAME family member 20, pseudogene 1141375017913752838Rat
11361880LOC108352720uncharacterized LOC108352720141525594615263468Rat
11430399LOC108348123zinc finger protein 431-like1449640044980011Rat
11441489LOC108352708uncharacterized LOC1083527081486494348676819Rat
11416112LOC108352711uncharacterized LOC1083527111493288859338581Rat
11416353LOC108352704uncharacterized LOC1083527041473351757347219Rat
11423237LOC108352697uncharacterized LOC1083526971455469735569298Rat
11423634LOC10835282340S ribosomal protein S19 pseudogene141233474612375603Rat
11375289LOC108352723uncharacterized LOC108352723141730476017307239Rat
11377841LOC10835271960S ribosomal protein L12 pseudogene141521672215217306Rat
11389755LOC108352705uncharacterized LOC1083527051478830857884663Rat
11381376LOC108352839uncharacterized LOC1083528391444397084444361Rat
11391501LOC108352702uncharacterized LOC1083527021468496906856252Rat
11392357LOC108352699uncharacterized LOC1083526991463861326424780Rat
11482723LOC108352706uncharacterized LOC1083527061479388597947343Rat
41378313LOC120096569uncharacterized LOC120096569141021805710223168Rat
41137597LOC120096571uncharacterized LOC120096571141248615312492479Rat
41167547Ndufa3-ps2NADH:ubiquinone oxidoreductase subunit A3, pseudogene 21458234615825293Rat
41202894LOC120096559uncharacterized LOC1200965591445855044587305Rat
41248860Prelid1-ps4PRELI domain containing 1, pseudogene 4141048205110482698Rat
41281688LOC120096803small nucleolar RNA SNORA17141816018618160317Rat
41282244LOC120096741U6 spliceosomal RNA1496989929699096Rat
41323582LOC120096562uncharacterized LOC1200965621458590795862463Rat
41113676LOC120096558uncharacterized LOC1200965581448326074841231Rat
41168294LOC120096565uncharacterized LOC1200965651474268777433641Rat
41284210LOC120096727uncharacterized LOC1200967271474014657408299Rat
41089131LOC120096783small nucleolar RNA SNORA36 family1443119194312050Rat
41115972LOC120093066uncharacterized LOC120093066141733898417370314Rat
41280603Oog1-ps1oogenesin 1, pseudogene 1141419200614194806Rat
41328344LOC120096511PRAME family member 8-like141466067714663400Rat
41362457LOC120096842U2 spliceosomal RNA141267594512676137Rat
41118678LOC120096720NEDD4-binding protein 1-like141455595814557059Rat
41119288LOC120096715PRAME family member 8-like141402964214032337Rat
41363895LOC120096573uncharacterized LOC120096573141326036313281692Rat
41094695LOC120096581oogenesin-3-like141630545616306013Rat
41120328LOC120096794small Cajal body-specific RNA 23141601655616016682Rat
41148703LOC120096561uncharacterized LOC1200965611458266225828757Rat
41097334Cwf19l1-ps1CWF19 like cell cycle control factor 1, pseudogene 1141568179415689181Rat
41366938LOC120096547uncharacterized LOC1200965471455139575516173Rat
41392218Ppid-ps10peptidylprolyl isomerase D, pseudogene 101489161688918133Rat
41393193LOC120096739U6 spliceosomal RNA1446326424632748Rat
41098044LOC120096575uncharacterized LOC120096575141543651015439033Rat
41153909LOC120096556uncharacterized LOC1200965561440160024024309Rat
41192184LOC120096568uncharacterized LOC1200965681498135049816468Rat
41265197LOC120096791small Cajal body-specific RNA 4141562251715622646Rat
41288113LOC120096834U6atac minor spliceosomal RNA141575059415750708Rat
41155602Sec61g-ps2Sec61 translocon subunit gamma, pseudogene 2141604012616042214Rat
41180782Mrpl30-ps1mitochondrial ribosomal protein L30, pseudogene 1141534458915345964Rat
41268253LOC120096815small nucleolar RNA SNORA17141103643411036565Rat
41369409LOC120096868U6 spliceosomal RNA141202668912026795Rat
41102643LOC120096799small nucleolar RNA SNORA48141667595116676080Rat
41126636LOC120096747U6 spliceosomal RNA141742200317422114Rat
41158177LOC120096572uncharacterized LOC120096572141265225512661089Rat
41183035LOC120096510oogenesin-1-like141380317313805847Rat
41193840LOC120096854small nucleolar RNA U31448159744816072Rat
41195182LOC120096864U4 spliceosomal RNA141255384212553982Rat
41070389LOC120096564uncharacterized LOC1200965641465131636530122Rat
41271520LOC120096582uncharacterized LOC120096582141748290017529510Rat
41230670LOC120096853U2 spliceosomal RNA141342550313425629Rat
41375215LOC120096779small nucleolar RNA SNORA70141500957415009708Rat
41199361LOC120096563cytochrome c oxidase assembly protein COX20, mitochondrial-like1465677336568059Rat
41378079LOC120096837small nucleolar RNA U13141596638315966493Rat
41404100LOC120096579uncharacterized LOC120096579141651140116643441Rat
40949163LOC120096576uncharacterized LOC120096576141581014015814669Rat
40974171LOC120096782small nucleolar RNA SNORA57141587592315876063Rat
40980577LOC120096570uncharacterized LOC120096570141022585310229996Rat
40998944LOC120096795U1 spliceosomal RNA1460569876057141Rat
40981411LOC120096760U6 spliceosomal RNA141245608412456190Rat
40982470N4bp1-ps3Nedd4 binding protein 1, pseudogene 3141453412514535345Rat
40933861N4bp1-ps4Nedd4 binding protein 1, pseudogene 4141454139914542619Rat
40959535LOC120096512PRAME family member 8-like141470434014706997Rat
40960387LOC120096557zinc finger protein 239-like1450812435082649Rat
40984079NEWGENE_40938314transfer RNA serine (anticodon AGA)1492754089275482Rat
41008131Lamtor2-ps1late endosomal/lysosomal adaptor, MAPK and MTOR activator 2, pseudogene 1141596783615968234Rat
40942266N4bp1-ps5Nedd4 binding protein 1, pseudogene 5141454870014549920Rat
41025388LOC120096865U6 spliceosomal RNA1483304688330574Rat
41335342LOC120096578uncharacterized LOC120096578141600897916028574Rat
41057597LOC120096580uncharacterized LOC120096580141665340216669293Rat
41335052LOC120096509uncharacterized LOC120096509141205730812060933Rat
41017864LOC120096567uncharacterized LOC1200965671489761308980582Rat
41307086LOC120096745U6 spliceosomal RNA1447980324798138Rat
41240491LOC120096701peptidyl-prolyl cis-trans isomerase FKBP2-like1466792296679870Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10113D14Mit2194141759357517593761Ratregion
10135D14Wox11135141762256217622685Ratregion
11077D14Wox18147141730012517300272Ratregion
11078D14Mgh10235141730006917300296Ratregion
33937D14Mit111431438570383857178Ratregion
33953D14Mit1186141103062211030812Ratregion
34479D14Mgh7112141025455610254668Ratregion
33551D14Mit6191141827449818274691Ratregion
36053D14Rat41341481706688170790Ratregion
37350D14Rat42242141280020012800448Ratregion
37030D14Rat31591490888099088978Ratregion
36536D14Rat11441438130743813216Ratregion
35805D14Rat5160141027701610277166Ratregion
35965D14Rat6174141487516814875342Ratregion
39860D14Rat731941485443128544522Ratregion
39876D14Rat98227141301531113015539Ratregion
40146D14Rat76163141098859410988749Ratregion
39204D14Rat542201440418724042062Ratregion
39568D14Rat74212141026652010266726Ratregion
41984D14Arb12721454404385440710Ratregion
41996D14Arb3277141729924417299529Ratregion
41998D14Arb4246141762249617622741Ratregion
41160D14Rat79202141307741513077619Ratregion
41348D14Rat80154141232686612327004Ratregion
41438D14Rat721731464761076476292Ratregion
43008D14Rat1011621497444899744646Ratregion
43009D14Rat104127141342914713429281Ratregion
43010D14Rat103230141280874912808976Ratregion
43013D14Rat114242141263435112634585Ratregion
42386D14Rat1422461457482455748477Ratregion
42390D14Rat143119141821258418212709Ratregion
40834D14Rat78104141599509915995211Ratregion
41690D14Rat102200141817462718174822Ratregion
45143D14Got72441441463534146597Ratregion
45144D14Got81561444566974456852Ratregion
45146D14Got101721458895485889720Ratregion
45149D14Got12315141261162612611938Ratregion
45151D14Got13236141186828911868525Ratregion
45152D14Got16156141065432710654483Ratregion
45153D14Got152451491148449115089Ratregion
45155D14Got19197141555212315552320Ratregion
45156D14Got22299141542937215429671Ratregion
45158D14Got18171141555998715560158Ratregion
45159D14Got20178141558915315589333Ratregion
45160D14Wox2186141668310216683292Ratregion
45162D14Got23198141749136017491558Ratregion
45163D14Got25175141797429517974470Ratregion
45164D14Got26138141815274618152886Ratregion
60762D14Wox10100141762256117622640Ratregion
60083D14Got92211459921065992327Ratregion
45306D14Got171451475365267536671Ratregion
60056D14Got111171459356435935760Ratregion
60057D14Got141711484858848486055Ratregion
60058D14Got24150141756528517565435Ratregion
66462D14Mco13350141317472713175095Ratregion
738059D14Hmgc3144141773143117731575Ratregion
1630716D14Got134162141740246517402624Ratregion
1631784D14Wox27171141073692810737099Ratregion
1627952D14Got142215141570245515702672Ratregion
1628920D14Got154201141160505211605253Ratregion
1629285D14Got1572441439331113933350Ratregion
1633391D14Got130171141797433417974505Ratregion
1634893D14Got129185141732957717329764Ratregion
1635099D14Got1471001475915087591606Ratregion
1636252D14Got100220141088568010885902Ratregion
1637138D14Ulb1304141562902915629335Ratregion
1637440D14Got1392141493816679381872Ratregion
1634005D14Wox221631456635145663677Ratregion
1634245D14Got132266141515146815151734Ratregion
4145308D14Hmgc11293141592753015927824Ratregion
4145310D14Hmgc10247141588074515880993Ratregion
4145312D14Hmgc12163141594176015941924Ratregion
4145314D14Hmgc9229141587577815876008Ratregion
4145316D14Hmgc13233141599212815992362Ratregion
7193050U27267123141731111917311242Ratregion
7206728stSG6070150141579705515798143Ratregion
7206510UniSTS:546792882141210775512108637Ratregion
5035881PMC275467P5941141757579717576738Ratregion
5036053UniSTS:463464611490695529069613Ratregion
5038934RH1274171941461085306108724Ratregion
5039006RH127459183141786069517860878Ratregion
5039034RH127475150141612868016128830Ratregion
5035625D21S1917471456473455647929Ratregion
5035709SPARCL1961456582285658324Ratregion
5033979RH140889183141586682415867007Ratregion
5028637RH1256892011495623059562506Ratregion
7206154UniSTS:5322818211467848186785639Ratregion
7206204Afp165141757449317575848Ratregion
5026266RH1315541801488126068812870Ratregion
5028855RH1425862121452118805212092Ratregion
5028887RH1427031441463514546351598Ratregion
5034205RH1417642201489356368935856Ratregion
5034221RH1418241801489295338929714Ratregion
5031840AU046980234141029275810292992Ratregion
5034398AA998890205141272965012729855Ratregion
5029231RH144013126141561096515611091Ratregion
5029309RH144308200141564605015646250Ratregion
5034772AI406402208141320275613202964Ratregion
5026780RH1335011811487144688714649Ratregion
5029533AA8596161981478102077810405Ratregion
5032451Fgf5177141132542011325597Ratregion
5035352AW5299131941456509205651114Ratregion
5032705RH1349931931448443744844567Ratregion
5035304AI1032852021461237056123907Ratregion
5025004AA6901791241489354488935572Ratregion
5030323BF4023272471473352347335481Ratregion
5027771RH946781651453090085309173Ratregion
5030499BI288928157141011708210117239Ratregion
5033247RH138130208141026030110260509Ratregion
5030801BE1202001741465388066538980Ratregion
5033653RH139612191141646865216468843Ratregion
5025620RH129019188141563726015637448Ratregion
5030903BF399292192141489982814900020Ratregion
5030919BF399376166141272780912727975Ratregion
5028446U27267125141731069517310820Ratregion
5028448AI3261151771442280294228206Ratregion
5031073BE1157921721476875947687766Ratregion
5051829RH94682196141272965912729855Ratregion
5054923RH1435021611457362065736367Ratregion
5054947RH1435171911452344185234609Ratregion
5051395AW548875104141490937314909477Ratregion
5053835RH142878240141331104413311284Ratregion
5053835RH142878240141331104413311284Ratregion
5051823RH946791891454401365440324Ratregion
5051827RH946812491455305995530848Ratregion
5057424BF4183281291487765108776639Ratregion
5057432BF4184321381443526504352788Ratregion
5059482BI291183150141780692017807070Ratregion
5059510BE0971391951454304815430676Ratregion
5057884BF392886961467892276789323Ratregion
5056057RH144158135141288138612881521Ratregion
5058838BF393702911467107416710832Ratregion
5059648BE097536199141037982510380024Ratregion
5052446RH118291195141646350016463695Ratregion
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5055267RH143703239141335958713360257Ratregion
5055291RH143716108141607185716071965Ratregion
5055503RH1438391531491080229108175Ratregion
5052931RH142357199141490201414902213Ratregion
5059996BI285802182141757344517574505Ratregion
5058266BI277889158141586813815868296Ratregion
505217310.MHAa98e10.seq1671462815576281724Ratregion
5052265M37823198141134564811345846Ratregion
5059104BE1028251651458095795809744Ratregion
5050370RH134017193141508981515090008Ratregion
5059230BF387708162141326043613260598Ratregion
5059314BG377265136141015145210151588Ratregion
5050646RH134177206141257981112580017Ratregion
7193131HNRPDL3001495584679559570Ratregion
5050062RH133840187141163284911633036Ratregion
5052444X53798109141718166117181770Ratregion
5052597RH125852248141601789216018140Ratregion
5052849RH142310181141570642515706606Ratregion
5053017RH142406182141719361617193797Ratregion
5054265RH1431251541446329604633115Ratregion
5054265RH1431251541447976674797821Ratregion
5053419RH1426381061495649919565097Ratregion
5054595RH143314144141154208811542232Ratregion
5041712RH129015203141272888712729090Ratregion
5041868RH129105152141729830817298460Ratregion
5040798RH1284891921457427735742965Ratregion
5043326RH1299621631478015617801723Ratregion
5044308RH130528218141570665415706872Ratregion
5043750RH130205183141168187211682057Ratregion
5045468RH1311951871457429435743130Ratregion
5041440RH128858220141569198815692208Ratregion
5041490RH1288861901489367368936926Ratregion
5044630RH130714197141279140512791604Ratregion
5046504RH131791209141602161116021820Ratregion
5044992RH1309211991458613705861569Ratregion
5047872RH132577182141787728617877468Ratregion
5049180RH1333312041456635205663724Ratregion
5046692RH1319001851467854706785655Ratregion
5049430RH1334761801495632499563429Ratregion
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5039938RH127994183141561208015612263Ratregion
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7192214Pf40141729870017299140Ratregion
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5072524RH136899192141606304416063236Ratregion
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5072592RH1369381831496335599633742Ratregion
5074532RH1380712091439473923947595Ratregion
5074716RH1381771231461027156102838Ratregion
5077010RH1395072191467783286778547Ratregion
5075902RH138863133141071204410712177Ratregion
5074810RH138231121141000906510009186Ratregion
5077148RH1395892171443532854353503Ratregion
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5077416RH139744200141070856510708765Ratregion
5075572RH138671177141490715614907333Ratregion
5076322RH1391081281458530275853155Ratregion
5079648RH1411232121452157395217149Ratregion
5077328RH1396932141468559786856192Ratregion
5076370RH1391362351448665374866773Ratregion
5077406RH1397382191457664745766693Ratregion
5078428RH1403372371467783186778555Ratregion
5079754RH141183197141601871016018907Ratregion
5078608RH1404422491443532534353503Ratregion
5078704RH140501103141248590212486005Ratregion
5079956RH141300203141572941515729825Ratregion
5078278RH1402471811492690689269249Ratregion
5070736RH1346752041492099599210163Ratregion
5072974RH1371611861489440518944237Ratregion
5080268RH141482211141572812715728338Ratregion
5073362RH137392151141729498217295667Ratregion
5080446RH1415831801452372775237457Ratregion
5071212RH134952189141674848316748672Ratregion
5070556RH1345691931468008936801086Ratregion
5073872RH137687155141249224412492399Ratregion
5073984RH1377521781456435065643685Ratregion
5074166RH1378602441458522815852525Ratregion
5071836RH1353132201442660654266285Ratregion
5073646RH1375561241442557094255833Ratregion
5074812RH138232158141709002217090184Ratregion
5063348BE1075791761454206795420855Ratregion
5065078AI044222137141572643615727691Ratregion
5067028AU048008234141027494710275181Ratregion
5067074AU0479812981478319307832228Ratregion
5067090AU0479701431460699166070059Ratregion
5067258AU047865130141648255116482681Ratregion
5067360AU047801278141647008616470364Ratregion
5067752AU047557163141597216215972326Ratregion
5068512AU047101207141729198917292196Ratregion
5070103RH94474100141071252910712629Ratregion
5070205RH94533106141757342917573535Ratregion
5068972AU0468081411485918348591970Ratregion
5069716AU046317118141525666815256786Ratregion
5062022BF397208109141603362816033737Ratregion
5062106BE106202157141037896910379124Ratregion
5065394BE1153231501489250008925150Ratregion
5060846BF3892011241440139614014085Ratregion
5062770AW5343921531444397634439916Ratregion
5065806AI045017171141727039617270567Ratregion
5061904BI294139193141219159012191783Ratregion
5061960BI2944861731452389135239086Ratregion
5063568BF404399222141272197012722192Ratregion
5065470BE1090351651493465939346758Ratregion
5060542BE1103021651452924655292630Ratregion
5063986BE120376189141057189710572086Ratregion
5062528BI2889221581441284024128560Ratregion
5062780AW534411150141488590614886056Ratregion
5061040BF4017021571443981894398346Ratregion
5062966BE113508154141481019014810343Ratregion
5086935AA801220210141646878416468994Ratregion
5087526PMC275467P2208141762278117622989Ratregion
5086494BQ2063301991441228634123062Ratregion
5082813BF390183163141712783117127994Ratregion
5088951AU048866176141747783617478012Ratregion
5089139AU048978240141292232012922560Ratregion
5089153AU048986107141543133715431372Ratregion
5089855AU049403203141336501313365216Ratregion
5089953AU049462150141129079911290949Ratregion
5089301AU049074121141520273615204218Ratregion
5089455AU0491661801440738524074034Ratregion
5083769AI1054321361456895665689702Ratregion
5083861AI2308201801490714119071590Ratregion
5089689AU049304225141545089715451122Ratregion
5084042AA894182203141248126812481471Ratregion
5090247AU0496381441491148379114981Ratregion
5084394AI233864231141726929917269530Ratregion
5087805D5Wsu145e2761495633629563638Ratregion
5082441BI274763218141503260915032827Ratregion
5088399AU0485461851459918775992236Ratregion
5088399AU0485461851459920515992236Ratregion
5081210RH1420282181452538315254049Ratregion
5085463BE0969012011457325285732727Ratregion
5085491BE0969671651442682644268429Ratregion
5090037AU049513209141026650210266711Ratregion
5082651BE1199301581459272185927376Ratregion
5086078AA891207188141561187815612066Ratregion
5080960RH141883188141248128312481471Ratregion
5086094BF3877111611439465613946722Ratregion
5085228AI598408157141775846017758617Ratregion
5085569BM390590214141559784515598059Ratregion
5503198mGk2484141210794712108431Ratregion
5507587Alb1128141762198717622819Ratregion
5503611UniSTS:465369103141761092417611027Ratregion
5503839PRDM8_8072919141140450511405424Ratregion
5507719G392001751464335036433678Ratregion
5504799UniSTS:275850174141757456717575931Ratregion
5504636PMC316977P23451453094245309769Ratregion
5505022Pf484141729849317298715Ratregion
5505322Aff115971459300275931624Ratregion
5505548G394862121499321929932404Ratregion
5505494D16S26254281491803659180793Ratregion
5506171AFM350VD14381477014687702102Ratregion
5506602UniSTS:2804071841453106245312028Ratregion
5507037fa55h08.s10141723926417239510Ratregion
5507037fa55h08.s10141723926417239611Ratregion
5507253AI0609080141563178515633459Ratregion
5499887UniSTS:235223175141491009514910270Ratregion
5502361RH124614257141786153317861790Ratregion
5500895D21S127011601489112698912431Ratregion
5503412G34499109141784556517845674Ratregion
5504734PMC86057P4438141762292017623358Ratregion
5501708HNRPDL14651495596329561097Ratregion
5502012MARC_23646-23647:1029444341:11581496278969628952Ratregion
5502014MARC_23650-23651:1029445581:19531496326219633574Ratregion
Position Markers

Flank 1: (D14Rat1)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,813,074 - 3,813,216 (+)MAPPER
Rnor_6.0144,833,233 - 4,833,374NCBI
Rnor_5.0144,830,815 - 4,830,956UniSTS
RGSC_v3.4144,895,894 - 4,896,036RGD
RGSC_v3.4144,895,895 - 4,896,036UniSTS
RGSC_v3.1144,895,895 - 4,896,036RGD
Celera143,806,493 - 3,806,634UniSTS
RH 3.4 Map1475.7UniSTS
RH 3.4 Map1475.7RGD
RH 2.0 Map1490.7RGD
SHRSP x BN Map142.29RGD
FHH x ACI Map141.33RGD
Peak: (D14Rat1)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,813,074 - 3,813,216 (+)MAPPER
Rnor_6.0144,833,233 - 4,833,374NCBI
Rnor_5.0144,830,815 - 4,830,956UniSTS
RGSC_v3.4144,895,894 - 4,896,036RGD
RGSC_v3.4144,895,895 - 4,896,036UniSTS
RGSC_v3.1144,895,895 - 4,896,036RGD
Celera143,806,493 - 3,806,634UniSTS
RH 3.4 Map1475.7UniSTS
RH 3.4 Map1475.7RGD
RH 2.0 Map1490.7RGD
SHRSP x BN Map142.29RGD
FHH x ACI Map141.33RGD
Flank 2: (D14Mit6)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21418,274,498 - 18,274,691 (+)MAPPER
Rnor_6.01419,909,740 - 19,909,932NCBI
Rnor_5.01419,816,468 - 19,816,660UniSTS
RGSC_v3.41419,800,225 - 19,800,418RGD
RGSC_v3.41419,800,226 - 19,800,418UniSTS
RGSC_v3.11419,800,225 - 19,800,418RGD
Celera1417,640,308 - 17,640,500UniSTS
Cytogenetic Map14p22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14121760611030812Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14121760616960180Rat
724541Niddm53Non-insulin dependent diabetes mellitus QTL 530.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1438130749088978Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)14381307418274691Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14381307418274691Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062228035204Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141103081230320092Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141487516830883947Rat
631528Scl11Serum cholesterol level QTL 114.9blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)141757341219726296Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
61413Eae10Experimental allergic encephalomyelitis QTL 103.5nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)141762268518274498Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general susceptibility allele comes from the BBDP 2293011
qtl_general measurement method: Rats were tested three times a week for the presence of glycosuria and ketonuria. Once the animals became glycosuric, the diagnosis of type 1 diabetes was made on the basis of hyperglycemia (blood glucose: 16.7 mmol/l) for two consecutive days. 2293011
qtl_general software used: R/QTL and QTL Cartographer 2303106
qtl_general number of animals used: 574 animals which were negative for glycosuria until 165 days 2303106