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Gene: Sdc4 (syndecan 4) Rattus norvegicus
Symbol: Sdc4
Name: syndecan 4
RGD ID: 3650
Description: Exhibits fibronectin binding activity; identical protein binding activity; and protein kinase C binding activity. Involved in positive regulation of cellular component biogenesis; positive regulation of protein kinase activity; and ureteric bud development. Localizes to several cellular components, including costamere; focal adhesion; and membrane raft. Used to study bacterial infectious disease. Orthologous to human SDC4 (syndecan 4); PARTICIPATES IN syndecan signaling pathway; cell-extracellular matrix signaling pathway; malaria pathway; INTERACTS WITH 1,3-dinitrobenzene; 17alpha-ethynylestradiol; 2-amino-2-deoxy-D-glucopyranose.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: RATRYUDOCA; RYUDOCA; ryudocan core protein; Ryudocan/syndecan 4; SYND4; syndecan-4
Homo sapiens (human) : SDC4 (syndecan 4)  HGNC  Alliance
Mus musculus (house mouse) : Sdc4 (syndecan 4)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sdc4 (syndecan 4)
Pan paniscus (bonobo/pygmy chimpanzee) : SDC4 (syndecan 4)
Canis lupus familiaris (dog) : SDC4 (syndecan 4)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sdc4 (syndecan 4)
Sus scrofa (pig) : SDC4 (syndecan 4)
Chlorocebus sabaeus (African green monkey) : SDC4 (syndecan 4)
Heterocephalus glaber (naked mole-rat) : Sdc4 (syndecan 4)
more info ...
Is Marker For: Strains:   SD  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.03160,872,503 - 160,891,190 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3160,872,503 - 160,891,190 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03167,052,789 - 167,071,476 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43155,446,138 - 155,464,825 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13155,352,182 - 155,370,861 (-)NCBI
Celera3151,766,226 - 151,784,912 (-)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Related Rat Strains
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
More on Sdc4
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 3650
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.